Citrus Sinensis ID: 020747
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | 2.2.26 [Sep-21-2011] | |||||||
| Q500U8 | 326 | Tetraketide alpha-pyrone | no | no | 0.965 | 0.953 | 0.468 | 2e-71 | |
| Q9S9N9 | 344 | Cinnamoyl-CoA reductase 1 | no | no | 0.956 | 0.895 | 0.435 | 4e-65 | |
| Q9SAH9 | 332 | Cinnamoyl-CoA reductase 2 | no | no | 0.953 | 0.924 | 0.421 | 2e-61 | |
| P51104 | 360 | Dihydroflavonol-4-reducta | N/A | no | 0.956 | 0.855 | 0.406 | 2e-56 | |
| P51110 | 337 | Dihydroflavonol-4-reducta | no | no | 0.972 | 0.928 | 0.392 | 8e-56 | |
| Q9XES5 | 348 | Bifunctional dihydroflavo | N/A | no | 0.962 | 0.890 | 0.391 | 9e-56 | |
| Q9CA28 | 321 | Tetraketide alpha-pyrone | no | no | 0.950 | 0.953 | 0.416 | 2e-55 | |
| Q84KP0 | 347 | Bifunctional dihydroflavo | N/A | no | 0.962 | 0.893 | 0.388 | 3e-55 | |
| P51102 | 382 | Dihydroflavonol-4-reducta | no | no | 0.968 | 0.816 | 0.390 | 8e-54 | |
| P14720 | 380 | Dihydroflavonol-4-reducta | N/A | no | 0.956 | 0.810 | 0.383 | 1e-52 |
| >sp|Q500U8|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 269 bits (688), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/316 (46%), Positives = 202/316 (63%), Gaps = 5/316 (1%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
VCVTGASGF+ASWLVK LL GY V TVRDP N K HL +L+GA ERL L KA+L+E
Sbjct: 8 VCVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVKADLME 67
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
EGSFD+A+ GC GVFHTASPV+ + NP+ +I+ PA+ GTLNVLRSC K S+KRVVLTS
Sbjct: 68 EGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKRVVLTS 127
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
S + + + P + +DE+ +++ LCK + WY+L+KTLAE+AAWKF++ENGIDLV
Sbjct: 128 SSSTVRIRDD-FDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENGIDLVT 186
Query: 190 IHPGTVIGPFFQPILNFGAEVILNLINGD-QSFAF--PYIFVEIRDVVYAHIRALEVPKA 246
+ P ++GP P L A +L L+ G+ + F + +V I DV HI E A
Sbjct: 187 VLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVFEHEAA 246
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINFTPWEV 306
GRY+ + +V +++ FL YP+L + E+ + + +SLG+ F E
Sbjct: 247 QGRYICSSNVISLEELVSFLSARYPSLPIPKRFEKLNRLHYDFDTSKIQSLGLKFKSLEE 306
Query: 307 GVRGCIESLMEKGFLS 322
CI SL+E+G+LS
Sbjct: 307 MFDDCIASLVEQGYLS 322
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Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Is essential for pollen wall development. Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 205/319 (64%), Gaps = 11/319 (3%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K VCVTGA G++ASW+VK+LL+RGYTVK TVR+P+ PK HLREL+G ERL L KA+L
Sbjct: 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQ 70
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + +A+DGCDGVFHTASPV +D+P+ +V+PAV G V+ + A+ +KRVV+T
Sbjct: 71 DYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAEA-KVKRVVIT 125
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SSIGA+ ++ P+ V+DE+ +S+ CK K WY K +AE+AAW+ AKE G+DLV
Sbjct: 126 SSIGAVYMDPN-RDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLV 184
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPKA 246
++P V+GP QP +N +L + G +++A +V++RDV AH+ E P A
Sbjct: 185 VLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSA 244
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPT---IKVSQERAKSLGINFTP 303
SGRYLLA S ++++ L + +P K +++ P K + ++ K LG+ FT
Sbjct: 245 SGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFTS 304
Query: 304 WEVGVRGCIESLMEKGFLS 322
+ + ++SL EKG L+
Sbjct: 305 TKQSLYDTVKSLQEKGHLA 323
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Involved in the latter stages of lignin biosynthesis. Catalyzes one of the last steps of monolignol biosynthesis, the conversion of cinnamoyl-CoAs into their corresponding cinnamaldehydes. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9SAH9|CCR2_ARATH Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 197/318 (61%), Gaps = 11/318 (3%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K+VCVTGA G++ASW+VKLLL+RGYTV+ TVR+P PK HLREL GA ERL L A+LL
Sbjct: 6 KLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKNNHLRELQGAKERLTLHSADLL 65
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + + +DGCDGVFHTASP ++D+P+ +++PAV G V+ + AK +KRVV T
Sbjct: 66 DYEALCATIDGCDGVFHTASP---MTDDPET-MLEPAVNGAKFVIDAAAKA-KVKRVVFT 120
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SSIGA+ +N T ++DE +S+ CK K WY K LAE++AW+ AK G+DLV
Sbjct: 121 SSIGAVYMNPNRDT-QAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGVDLV 179
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPKA 246
++P V+GP Q +N IL + G +++A ++V++RDV H+ E P A
Sbjct: 180 VLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEAPSA 239
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPT---IKVSQERAKSLGINFTP 303
SGRY+LA + ++++ L + +P K ++ P K + ++ K LG+ F P
Sbjct: 240 SGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLGLEFKP 299
Query: 304 WEVGVRGCIESLMEKGFL 321
+ + ++SL EKG L
Sbjct: 300 IKQSLYESVKSLQEKGHL 317
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Cinnamoyl-CoA reductase probably involved in the formation of phenolic compounds associated with the hypersensitive response. Seems not to be involved in lignin biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 192/330 (58%), Gaps = 22/330 (6%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFK 64
G+ + VCVTGASGF+ SWL+ LL+RGYTV+ATVRDP N+ K +HL +L A L L+K
Sbjct: 20 GQGETVCVTGASGFIGSWLIMRLLERGYTVRATVRDPDNTKKVQHLLDLPNAKTNLTLWK 79
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
A+L EEGSFD+AVDGC GVFH A+P+ F S +P+ +++ P + G L++L+SC K ++R
Sbjct: 80 ADLHEEGSFDAAVDGCTGVFHIATPMDFESKDPENEMIKPTINGMLDILKSCVKA-KLRR 138
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE--W-YSLAKTLAEEAAWKFAK 181
VV TSS G + T V DET +S + K W Y ++K LAE+AAWK+A
Sbjct: 139 VVFTSSGGTV---NVEATQKPVYDETCWSALDFIRSVKMTGWMYFVSKILAEQAAWKYAA 195
Query: 182 ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI----FVEIRDVVYAH 237
EN ++ ++I P V+GPF P + L+ I +S + I FV + D+ +H
Sbjct: 196 ENNLEFISIIPPLVVGPFIMPSMPPSLITALSPITRTESH-YTIIKQGQFVHLDDLCMSH 254
Query: 238 IRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQP--TIKVSQERAK 295
I E PKA+GRY+ + A DI K LRE YP K ++ + ++ S ++
Sbjct: 255 IFLYENPKANGRYIASACAATIYDIAKMLREEYPEYNVPTKFKDYKEDMGQVQFSSKKLT 314
Query: 296 SLGINFTPWEVGVR----GCIESLMEKGFL 321
LG F + G++ +ES KG L
Sbjct: 315 DLGFEF---KYGLKDMYTAAVESCRAKGLL 341
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Dianthus caryophyllus (taxid: 3570) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 186/326 (57%), Gaps = 13/326 (3%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFK 64
+ + VCVTGASGF+ SWLV LL+R TV+ATVRDP N K +HL +L A L L+K
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTLWK 62
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
A+L +EGSFD A+ GC GVFH A+P+ F S +P+ +++ P + G L +++SCA +++R
Sbjct: 63 ADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK--EW-YSLAKTLAEEAAWKFAK 181
+V TSS G + + E + V DE+ +S+ C+ K W Y ++KTLAE+AAWK+AK
Sbjct: 123 LVFTSSAGTVNIQEHQLP---VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK 179
Query: 182 ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ---SFAFPYIFVEIRDVVYAHI 238
EN ID + I P V+GPF + L+ I G++ S FV + D+ AHI
Sbjct: 180 ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHI 239
Query: 239 RALEVPKASGRYLLAGSVAQHSDILKFLREHYP--TLLRSGKLEEKYQPTIKVSQERAKS 296
E PKA GRY+ + D+ K LRE YP + K ++ ++ S ++
Sbjct: 240 YLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTD 299
Query: 297 LGINFT-PWEVGVRGCIESLMEKGFL 321
LG F E G +++ KG L
Sbjct: 300 LGFEFKYSLEDMFTGAVDTCRAKGLL 325
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Vitis vinifera (taxid: 29760) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 193/327 (59%), Gaps = 17/327 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKA 65
E + VCVTGASGF+ SWLV LL+ GYTV+ATVRDP N K +HL +L A L L+KA
Sbjct: 4 ESESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKA 63
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+L +EGSFD A+ GC GVFH A+P+ F S +P+ +++ P + G L++L++C K +++++
Sbjct: 64 DLADEGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTVRKL 123
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE--W-YSLAKTLAEEAAWKFAKE 182
V TSS G + + E V DE+ +S+ C+ K W Y ++KTLAE+AAWK+AKE
Sbjct: 124 VFTSSAGTVNVEEHQKP---VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKE 180
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI----FVEIRDVVYAHI 238
N ID + I P VIGPF P + L+ I ++S + I +V + D+ +HI
Sbjct: 181 NNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESH-YGIIKQGQYVHLDDLCLSHI 239
Query: 239 RALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGK---LEEKYQPTIKVSQERAK 295
E PKA GRY+ + A +++K LRE YP K +++ +P + S ++ +
Sbjct: 240 YLYEHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEP-VHFSSKKLR 298
Query: 296 SLGINFT-PWEVGVRGCIESLMEKGFL 321
+G F E G +++ KG +
Sbjct: 299 EIGFEFKYSLEDMFVGAVDACRAKGLI 325
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Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, dihydrokaempferol, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), naringenin to a low extent (10%), but not 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Malus domestica (taxid: 3750) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|Q9CA28|TKPR2_ARATH Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana GN=TKPR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 184/319 (57%), Gaps = 13/319 (4%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLEEG 71
VTG +GF+AS+++K LL+ G+TV+ TVR+P + K L E GA +RL + +A+L EG
Sbjct: 6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEG 65
Query: 72 SFDSAVDGCDGVFHTASPVIFLSD-NPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTS 129
SFD AV+G DGVFHTASPV+ D N Q +VDP + GT NV+ SCAK ++KR+VLTS
Sbjct: 66 SFDEAVNGVDGVFHTASPVLVPQDHNIQETLVDPIIKGTTNVMSSCAKSKATLKRIVLTS 125
Query: 130 SIGAM--LLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
S ++ + T +P ++E+ +S+P CK WY AKTL E AW+ A+E G+DL
Sbjct: 126 SCSSIRYRFDATEASP---LNESHWSDPEYCKRFNLWYGYAKTLGEREAWRIAEEKGLDL 182
Query: 188 VAIHPGTVIGPFFQPILNFGAEVILNLING--DQSFAFPYIFVEIRDVVYAHIRALEVPK 245
V ++P V+GP P +IL + G + F FV I DVV AH+ A+E PK
Sbjct: 183 VVVNPSFVVGPLLGPKPTSTLLMILAIAKGLAGEYPNFTVGFVHIDDVVAAHVLAMEEPK 242
Query: 246 ASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAK--SLGI-NFT 302
ASGR + + SVA S+I++ +R YP K K S + K LG +F
Sbjct: 243 ASGRIICSSSVAHWSEIIELMRNKYPNYPFENKCSNKEGDNSPHSMDTRKIHELGFGSFK 302
Query: 303 PWEVGVRGCIESLMEKGFL 321
CI S +KG L
Sbjct: 303 SLPEMFDDCIISFQKKGLL 321
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May be involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 193/327 (59%), Gaps = 17/327 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKA 65
E + VCVTGASGF+ SWLV LL+ GYTV+ATVRDP N K +HL +L A L L+KA
Sbjct: 4 ESESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTLWKA 63
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+L +EGSFD A+ GC GVFH A+P+ F S +P+ +++ P + G L++L++C K +++++
Sbjct: 64 DLADEGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTVRKL 123
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE--W-YSLAKTLAEEAAWKFAKE 182
V TSS G + + E V DE+ +S+ C+ K W Y ++KTLAE+AAWK+AKE
Sbjct: 124 VFTSSAGTVNVEEHQKP---VYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKE 180
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI----FVEIRDVVYAHI 238
N ID + I P VIGPF P + L+ I ++S + I +V + D+ +HI
Sbjct: 181 NNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESH-YGIIKQGQYVHLDDLCLSHI 239
Query: 239 RALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGK---LEEKYQPTIKVSQERAK 295
+ PKA GRY+ + A +++K LRE YP K +++ +P + S ++ +
Sbjct: 240 YLYKHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEP-VHFSSKKLR 298
Query: 296 SLGINFT-PWEVGVRGCIESLMEKGFL 321
+G F E G +++ KG +
Sbjct: 299 EIGFEFKYSLEDMFVGAVDACRAKGLI 325
|
Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), dihydrokaempferol to a low extent (5%), but not naringenin, 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate. Pyrus communis (taxid: 23211) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 4 |
| >sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 187/325 (57%), Gaps = 13/325 (4%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKA 65
+++ VCVTGASGF+ SWLV LL+RGY V+ATVRDP N K +HL +L A L L+KA
Sbjct: 4 QKETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTLWKA 63
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+L EEGS+D A++GCDGVFH A+P+ F S +P+ +++ P V G L ++++C K +++R
Sbjct: 64 DLSEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACVKAKTVRRF 123
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNP--VLCKENKEW-YSLAKTLAEEAAWKFAKE 182
V TSS G + + E V DE +S+ ++ K+ W Y ++KTLAE+AAW FA+E
Sbjct: 124 VFTSSAGTVNVEEHQKN---VYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEE 180
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ---SFAFPYIFVEIRDVVYAHIR 239
G+D ++I P V+GPF + L+ I ++ S +V + D+ AHI
Sbjct: 181 KGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNAHIF 240
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSL 297
E A GRY+ + A I KFLR YP E ++ +I+ S ++ +
Sbjct: 241 LYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVDENLKSIEFSSKKLTDM 300
Query: 298 GINFT-PWEVGVRGCIESLMEKGFL 321
G NF E IE+ +KGFL
Sbjct: 301 GFNFKYSLEEMFIESIETCRQKGFL 325
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
| >sp|P14720|DFRA_PETHY Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 185/323 (57%), Gaps = 15/323 (4%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLL 68
VCVTGA+GF+ SWLV LL+RGY V ATVRDP N K +HL EL A L L+KA+L
Sbjct: 17 TVCVTGAAGFIGSWLVMRLLERGYNVHATVRDPENKKKVKHLLELPKADTNLTLWKADLT 76
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
EGSFD A+ GC GVFH A+P+ F S +P+ +++ P V G L+++ SCAK +++KR+V T
Sbjct: 77 VEGSFDEAIQGCQGVFHVATPMDFESKDPENEVIKPTVRGMLSIIESCAKANTVKRLVFT 136
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNP--VLCKENKEW-YSLAKTLAEEAAWKFAKENGI 185
SS G + + E + D+T +S+ + K+ W Y +K LAE+AA + AK+ I
Sbjct: 137 SSAGTLDVQE---QQKLFYDQTSWSDLDFIYAKKMTGWMYFASKILAEKAAMEEAKKKNI 193
Query: 186 DLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI----FVEIRDVVYAHIRAL 241
D ++I P V+GPF P L+LI G+++ + I +V + D+ AHI
Sbjct: 194 DFISIIPPLVVGPFITPTFPPSLITALSLITGNEAH-YCIIKQGQYVHLDDLCEAHIFLY 252
Query: 242 EVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSLGI 299
E PKA GR++ + A D+ K +RE +P + + +K P + S ++ +G
Sbjct: 253 EHPKADGRFICSSHHAIIYDVAKMVREKWPEYYVPTEFKGIDKDLPVVSFSSKKLTDMGF 312
Query: 300 NFT-PWEVGVRGCIESLMEKGFL 321
F E +G I++ +K L
Sbjct: 313 QFKYTLEDMYKGAIDTCRQKQLL 335
|
Petunia hybrida (taxid: 4102) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | ||||||
| 225470855 | 326 | PREDICTED: bifunctional dihydroflavonol | 0.993 | 0.981 | 0.629 | 1e-113 | |
| 224106117 | 341 | cinnamoyl CoA reductase-like protein [Po | 0.993 | 0.938 | 0.628 | 1e-113 | |
| 225470851 | 326 | PREDICTED: bifunctional dihydroflavonol | 0.993 | 0.981 | 0.629 | 1e-113 | |
| 255553494 | 324 | cinnamoyl-CoA reductase, putative [Ricin | 0.990 | 0.984 | 0.624 | 1e-113 | |
| 359487096 | 323 | PREDICTED: bifunctional dihydroflavonol | 0.987 | 0.984 | 0.619 | 1e-113 | |
| 359487083 | 323 | PREDICTED: bifunctional dihydroflavonol | 0.990 | 0.987 | 0.623 | 1e-113 | |
| 225465329 | 323 | PREDICTED: bifunctional dihydroflavonol | 0.987 | 0.984 | 0.623 | 1e-112 | |
| 297736314 | 326 | unnamed protein product [Vitis vinifera] | 0.984 | 0.972 | 0.633 | 1e-112 | |
| 225455496 | 324 | PREDICTED: dihydroflavonol-4-reductase [ | 0.984 | 0.978 | 0.638 | 1e-112 | |
| 359486990 | 323 | PREDICTED: LOW QUALITY PROTEIN: bifuncti | 0.978 | 0.975 | 0.631 | 1e-111 |
| >gi|225470855|ref|XP_002268322.1| PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Vitis vinifera] gi|298205076|emb|CBI40597.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/327 (62%), Positives = 253/327 (77%), Gaps = 7/327 (2%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATER 59
M +GEG KVVCVTGA+GFVASWLVKLLLQRGYTV+ATVRDPN PK TEHL LDGA ER
Sbjct: 1 MSTGEG--KVVCVTGAAGFVASWLVKLLLQRGYTVRATVRDPNDPKKTEHLLSLDGAKER 58
Query: 60 LHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
L LFKA+LLEEGSFD VDGCDGVFHTASPV+ +PQ +++DPA+ GT+NVLRSC+KV
Sbjct: 59 LRLFKADLLEEGSFDPVVDGCDGVFHTASPVVMQVTDPQTELIDPALKGTINVLRSCSKV 118
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
S+KRVV+TSS+ A+ N P+TP+V+IDE+WFS+ VLCKE+K WY L+KTLAEEAAWKF
Sbjct: 119 PSVKRVVVTSSMSAVEQNGKPLTPEVIIDESWFSDAVLCKESKLWYKLSKTLAEEAAWKF 178
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF--AFPYIFVEIRDVVYAH 237
+KENGID+V I+PG V+GP QP LN E IL L+NG Q+F Y +V+ RDV AH
Sbjct: 179 SKENGIDMVMINPGWVLGPLLQPTLNLSVEEILKLLNGVQTFPKTTSYTWVDARDVANAH 238
Query: 238 IRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQ--PTIKVSQERAK 295
I+A E+P+ASGRY L G+V+ S+ L L + YP + K E+ PT +VSQE+AK
Sbjct: 239 IQAFELPEASGRYCLVGTVSHRSETLNILHKLYPAIHIPEKWEDGQTCVPTFRVSQEKAK 298
Query: 296 SLGINFTPWEVGVRGCIESLMEKGFLS 322
SLGI+FTP EV ++ +ESL EK F+S
Sbjct: 299 SLGIHFTPLEVSIKDTVESLKEKNFIS 325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106117|ref|XP_002314050.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] gi|222850458|gb|EEE88005.1| cinnamoyl CoA reductase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/323 (62%), Positives = 247/323 (76%), Gaps = 3/323 (0%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERL 60
MS G+ KVVCVTG SG++ASWLVKLLLQRGYTVK TVRDPN PK TEHL L+GA ERL
Sbjct: 17 MSRGGDGKVVCVTGGSGYIASWLVKLLLQRGYTVKTTVRDPNDPKKTEHLLALEGAKERL 76
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFL-SDNPQADIVDPAVMGTLNVLRSCAKV 119
HLFKANLLEEG+FD VDGC+GVFHTASPV F +D+PQ D++DPA+ GTLNVLRSCAKV
Sbjct: 77 HLFKANLLEEGAFDPIVDGCEGVFHTASPVSFSPTDDPQVDLIDPALKGTLNVLRSCAKV 136
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
HSI+RVVLTSS A + + P+ DVVIDETW+S+P +CKE K WY+L+KTLAEEAAW F
Sbjct: 137 HSIRRVVLTSSAAACIYSGKPLNHDVVIDETWYSDPAICKELKAWYALSKTLAEEAAWNF 196
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI-FVEIRDVVYAHI 238
AKEN DLV +HP VIGP QP LN E+IL+L+NG +++ Y +++RDV AHI
Sbjct: 197 AKENATDLVTVHPSFVIGPLLQPTLNLSVEMILDLVNGAETYPNGYYRCIDVRDVANAHI 256
Query: 239 RALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLG 298
+A E+P ASGRY+L V S++LK +RE+YPTL K E +VS+E+AK+LG
Sbjct: 257 QAFEIPSASGRYVLTAYVTTFSEVLKIIRENYPTLRLPEKSTESMFKPYQVSKEKAKTLG 316
Query: 299 INFTPWEVGVRGCIESLMEKGFL 321
INFTP ++ + IESL EKGFL
Sbjct: 317 INFTPLDLSLVDTIESLKEKGFL 339
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470851|ref|XP_002268122.1| PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Vitis vinifera] gi|298205080|emb|CBI40601.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/327 (62%), Positives = 253/327 (77%), Gaps = 7/327 (2%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATER 59
M +GEG KVVCVTGA+GFVASWLVKLLLQRGYTV+ATVRDPN PK TEHL LDGA ER
Sbjct: 1 MSTGEG--KVVCVTGAAGFVASWLVKLLLQRGYTVRATVRDPNDPKKTEHLLSLDGAKER 58
Query: 60 LHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
L LFKA+LLEEGSFD VDGCDGVFHTASPV+ +PQ +++DPA+ GT+NVLRSC+KV
Sbjct: 59 LRLFKADLLEEGSFDPVVDGCDGVFHTASPVVMQVTDPQTELIDPALKGTINVLRSCSKV 118
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
S+KRVV+TSS+ A+ N P+TP+V+IDE+WFS+ VLCKE+K WY L+KTLAEEAAWKF
Sbjct: 119 PSVKRVVVTSSMSAVEQNGKPLTPEVIIDESWFSDAVLCKESKLWYKLSKTLAEEAAWKF 178
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF--AFPYIFVEIRDVVYAH 237
+KENGID+V I+PG V+GP QP LN E IL L+NG Q+F Y +V+ RDV AH
Sbjct: 179 SKENGIDMVMINPGWVLGPLLQPTLNLSVEEILKLLNGVQTFPKTTSYTWVDARDVANAH 238
Query: 238 IRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQ--PTIKVSQERAK 295
I+A E+P+ASGRY L G+V+ S+ L L + YP + K E+ PT +VSQE+AK
Sbjct: 239 IQAFELPEASGRYCLVGTVSHRSETLNILHKLYPAIHIPEKWEDGQTCVPTFRVSQEKAK 298
Query: 296 SLGINFTPWEVGVRGCIESLMEKGFLS 322
SLGI+FTP EV ++ +ESL EK F+S
Sbjct: 299 SLGIHFTPLEVSMKDTVESLKEKNFIS 325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553494|ref|XP_002517788.1| cinnamoyl-CoA reductase, putative [Ricinus communis] gi|223543060|gb|EEF44595.1| cinnamoyl-CoA reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/325 (62%), Positives = 253/325 (77%), Gaps = 6/325 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERL 60
MSGEG KVVCVTG SG++ SWL+K LLQ+GYTVKATVRDP +S KT+HL LDGA ERL
Sbjct: 1 MSGEG--KVVCVTGGSGYIGSWLIKHLLQKGYTVKATVRDPSDSKKTDHLLALDGAKERL 58
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
HLFKA+LL EGSFDS VDGCDGVFH+ASPV+F + +PQ +++DPA+ GTLNVL+SCAKV
Sbjct: 59 HLFKADLLAEGSFDSVVDGCDGVFHSASPVLFSATDPQTELIDPAIKGTLNVLKSCAKVK 118
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRVV+TSS+ A+L + P+T DVV+DETW+S+P +CKE K WY+L+KTLAEEAAW FA
Sbjct: 119 SVKRVVITSSMAAVLRSRRPLTADVVVDETWYSDPEVCKELKVWYALSKTLAEEAAWNFA 178
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI-FVEIRDVVYAHIR 239
KEN IDLV I+P VIGP QP LN E+ILNLI G +++ Y +IRDVV HI+
Sbjct: 179 KENAIDLVTINPTYVIGPMLQPTLNSSVEMILNLIKGAETYPNAYYSSADIRDVVDVHIQ 238
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEK--YQPTIKVSQERAKSL 297
A EVP ASGRY + +V +S+++K + EHYPTL K +E P+ KVS E+AKSL
Sbjct: 239 AFEVPSASGRYCVVPNVLHYSEVVKIIHEHYPTLHLPEKCDETQLLSPSFKVSNEKAKSL 298
Query: 298 GINFTPWEVGVRGCIESLMEKGFLS 322
GIN+ P+EV ++G IESL EKGFL+
Sbjct: 299 GINYIPFEVTLKGTIESLKEKGFLT 323
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487096|ref|XP_003633516.1| PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Vitis vinifera] gi|296085371|emb|CBI29103.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 249/321 (77%), Gaps = 3/321 (0%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLF 63
+G+ KVVCVTGASG++ASWLVKLLLQRGYTVKATVRDPN PK TEHL L+GA ERLHLF
Sbjct: 2 DGQGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALEGAKERLHLF 61
Query: 64 KANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
KANLLEEGSFDS VDGCDGVFHTASPV+ + D+PQA ++DPA+ GT++VL SCAKV S+K
Sbjct: 62 KANLLEEGSFDSVVDGCDGVFHTASPVVLIVDDPQAQLIDPALKGTMSVLGSCAKVPSVK 121
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
RVV+TSS+ ++ N P+ PDV++DE+WFS+PV C+++K WY L+KTLAEEAAWKFAKEN
Sbjct: 122 RVVVTSSMASVAFNGKPLAPDVLVDESWFSDPVFCEKSKLWYMLSKTLAEEAAWKFAKEN 181
Query: 184 GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV 243
GID+V I+PG VIGP QP LN E +L L+ GD + +V++RDV AHI+A E+
Sbjct: 182 GIDMVTINPGWVIGPLLQPTLNLSVEEVLKLLKGDTFPNKTHRWVDVRDVAMAHIQAYEL 241
Query: 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLGINF 301
P A GRY L GS+ S+ +K LR+ YP L K ++ Y+P VSQE+ KSLGI+F
Sbjct: 242 PTARGRYCLVGSILHCSETMKILRKLYPALNLPEKCADDKPYEPAYMVSQEKTKSLGIDF 301
Query: 302 TPWEVGVRGCIESLMEKGFLS 322
TP EV ++ +ESL EK F+S
Sbjct: 302 TPLEVSLKDTVESLREKNFVS 322
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487083|ref|XP_003633515.1| PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Vitis vinifera] gi|296085368|emb|CBI29100.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/324 (62%), Positives = 251/324 (77%), Gaps = 5/324 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERL 60
MSG+G KVVCVTGASG++ASWLVKLLLQRGYTVKATVRDPN PK TEHL L+GA ERL
Sbjct: 1 MSGQG--KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALEGAKERL 58
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
HLF+ANLLEEGSFDS VDGCDGVFHTASPV+ + D+PQA ++DPA+ GT+NVL SCAKV
Sbjct: 59 HLFEANLLEEGSFDSVVDGCDGVFHTASPVVMIVDDPQAQLIDPALKGTMNVLGSCAKVP 118
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRVV+TSS+ ++ N + PDV++DE+WFS+PV C+++K WY L+KTLAEEAAWKFA
Sbjct: 119 SVKRVVVTSSMASVAFNGKHLAPDVLVDESWFSDPVFCEKSKLWYMLSKTLAEEAAWKFA 178
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRA 240
KENGID+V I+PG VIGP QP LN E +L L+ GD + +V++RDV AHI+A
Sbjct: 179 KENGIDMVTINPGWVIGPLLQPTLNLSVEEVLKLLKGDTFPNKTHRWVDVRDVAMAHIQA 238
Query: 241 LEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLG 298
E+P A GRY L GS+ S+ +K LR+ YP L K ++ Y+PT VSQE+ KSLG
Sbjct: 239 YELPTARGRYCLVGSILHCSETMKILRKLYPALNLPEKCADDKPYEPTYMVSQEKTKSLG 298
Query: 299 INFTPWEVGVRGCIESLMEKGFLS 322
I+FTP EV ++ +ESL EK F+S
Sbjct: 299 IDFTPLEVSMKDTVESLREKNFVS 322
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465329|ref|XP_002274632.1| PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 [Vitis vinifera] gi|296085398|emb|CBI29130.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/321 (62%), Positives = 249/321 (77%), Gaps = 3/321 (0%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLF 63
+G+ KVVCVTGASG++ASWLVKLLLQRGYTVKATVRDPN PK TEHL L+GA ERLHLF
Sbjct: 2 DGQGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALEGAKERLHLF 61
Query: 64 KANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
KANLLEEGSFDS VDGCDGVFHTASPV+ + D+PQA ++DPA+ GT++VL SCAKV S+K
Sbjct: 62 KANLLEEGSFDSVVDGCDGVFHTASPVVLIVDDPQAQLIDPALKGTMSVLGSCAKVPSVK 121
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
RVV+TSS+ ++ N P+ PDV++DE+WFS+PV C+++K WY L+KTLAEEAAWKFAKEN
Sbjct: 122 RVVVTSSMASVAFNGKPLAPDVLVDESWFSDPVFCEKSKLWYMLSKTLAEEAAWKFAKEN 181
Query: 184 GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV 243
GID+V I+PG VIGP QP LN E +L L+ GD + +V++RDV AHI+A E+
Sbjct: 182 GIDMVTINPGWVIGPLLQPTLNLSVEEVLKLLKGDIFPNKTHRWVDVRDVAMAHIQAYEL 241
Query: 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLGINF 301
A GRY L GS+ S+ +K LR+ YP L K +E Y+PT VSQE+ KSLGI+F
Sbjct: 242 STARGRYCLVGSILHCSETMKILRKLYPALNLPEKCADDEPYEPTYMVSQEKTKSLGIDF 301
Query: 302 TPWEVGVRGCIESLMEKGFLS 322
TP EV ++ +ESL EK F+S
Sbjct: 302 TPLEVSMKDTVESLREKNFVS 322
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736314|emb|CBI24952.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/322 (63%), Positives = 247/322 (76%), Gaps = 5/322 (1%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLFK 64
GE KVVCVTGASGF+ASWLVKLLLQ YTVKATVRDPN PK T+HL LDGA ERLHLFK
Sbjct: 4 GEGKVVCVTGASGFIASWLVKLLLQHDYTVKATVRDPNDPKKTQHLLSLDGAKERLHLFK 63
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
A+LLEEGSFDS VDGCDGVFHTASPV NPQA+++DPA+ GT+NVLRSCAK S+KR
Sbjct: 64 ADLLEEGSFDSVVDGCDGVFHTASPVAMDVVNPQAELIDPALKGTINVLRSCAKFPSVKR 123
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
VV+TSS+ A++ P+T +V+IDE+WFS+PVLCKE+K WY L+KTLAEEAAWKF+KENG
Sbjct: 124 VVVTSSMAAVVFTGKPLTSEVLIDESWFSDPVLCKESKLWYVLSKTLAEEAAWKFSKENG 183
Query: 185 IDLVAIHPGTVIGPFFQPILNFGAEVILNLING--DQSFAFPYIFVEIRDVVYAHIRALE 242
ID+V I+P VIGP QP LN AEV+LNLIN Q Y V++RDV AHI+A E
Sbjct: 184 IDMVTINPAWVIGPLIQPTLNLSAEVVLNLINDTLQQLMKISYRLVDVRDVANAHIQAYE 243
Query: 243 VPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLGIN 300
+P+ASGRY L +S+ +K LR+ YP L K ++ Y P+ +VSQE+ KSLGI+
Sbjct: 244 IPEASGRYCLVEKDLHYSETVKILRKLYPELPLPEKCADDKPYAPSSRVSQEKVKSLGIH 303
Query: 301 FTPWEVGVRGCIESLMEKGFLS 322
FTP EV ++ +ESL EK F+S
Sbjct: 304 FTPLEVSLKDTVESLKEKNFVS 325
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455496|ref|XP_002263014.1| PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera] gi|296086795|emb|CBI32944.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/321 (63%), Positives = 243/321 (75%), Gaps = 4/321 (1%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLHLFK 64
G EKVVCVTGASG++ASWLVKLLLQRGYTV A+VRDP+ P KTEHL LDGA ERLHLFK
Sbjct: 3 GAEKVVCVTGASGYIASWLVKLLLQRGYTVNASVRDPDDPTKTEHLLALDGAKERLHLFK 62
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
ANLLEEG+FDS VDGC+GVFHTASP NPQ +++DPAV GTLNVLRSCAKV SI+R
Sbjct: 63 ANLLEEGAFDSMVDGCEGVFHTASPFYHTVSNPQVELIDPAVKGTLNVLRSCAKVPSIRR 122
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
VV+TSS+ A+ +TPDVV+DETWFS+P +C++ K WY L+KTLAEEAAWKFAKEN
Sbjct: 123 VVVTSSMAAVAFTGQTLTPDVVVDETWFSDPAVCEKLKLWYMLSKTLAEEAAWKFAKENK 182
Query: 185 IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRALEV 243
IDLVAI+PG VIGP QP LN E +L LING Q+F Y +V++RDV AHI+A EV
Sbjct: 183 IDLVAINPGLVIGPLLQPTLNTSVEPVLKLINGTQTFPNITYRWVDVRDVANAHIQAFEV 242
Query: 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLGINF 301
P A+GRY L V S+++K L E YPT K ++ ++PT +VSQERA+SLGINF
Sbjct: 243 PSANGRYCLVSRVTHCSEVVKILHELYPTSNLPDKCADDKPFEPTYQVSQERARSLGINF 302
Query: 302 TPWEVGVRGCIESLMEKGFLS 322
P EV +ESL EK F S
Sbjct: 303 IPVEVSFNDTVESLKEKKFFS 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486990|ref|XP_003633502.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/328 (63%), Positives = 258/328 (78%), Gaps = 13/328 (3%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERL 60
MSGEG KVV VTGASGF+ASWLVKLLLQ YTVKATVRDPN PK T+HL LDGA ERL
Sbjct: 1 MSGEG--KVVSVTGASGFIASWLVKLLLQHRYTVKATVRDPNDPKKTQHLLSLDGAQERL 58
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
HLFKA+LLEEGSFDS VDGCDGV HTASPV + NPQ +++DPA+ GT+NVLRSC+KV
Sbjct: 59 HLFKADLLEEGSFDSVVDGCDGV-HTASPVALEAINPQTELIDPALKGTINVLRSCSKVP 117
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRVV+TSS+ ++L P+TP+V+IDE+WFS+PVLCKE+K+WY L+K +AEEAAW F+
Sbjct: 118 SVKRVVVTSSLASVLFTGEPVTPEVLIDESWFSDPVLCKESKQWYVLSK-IAEEAAWNFS 176
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI---FVEIRDVVYAH 237
KENGID+V I+PG VIGP QP LN AE +LNLING Q+ FP I +V++RDV AH
Sbjct: 177 KENGIDMVTINPGWVIGPLLQPTLNLSAEQVLNLINGAQT--FPNISSWWVDVRDVANAH 234
Query: 238 IRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLL---RSGKLEEKYQPTIKVSQERA 294
I+A E+P+ASGRY L + +S+ILK LR+ YP L R ++++ Y P+ + SQE+A
Sbjct: 235 IQAYEIPEASGRYCLVEGIXHNSEILKILRKLYPGLPLPERXMRIDKPYAPSSRASQEKA 294
Query: 295 KSLGINFTPWEVGVRGCIESLMEKGFLS 322
KSLGI+FTP EV ++ +ESL EK F+S
Sbjct: 295 KSLGIHFTPLEVSLKDTVESLKEKNFVS 322
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | ||||||
| TAIR|locus:2150315 | 326 | AT5G19440 [Arabidopsis thalian | 0.990 | 0.978 | 0.594 | 3.1e-99 | |
| TAIR|locus:2033904 | 325 | AT1G51410 [Arabidopsis thalian | 0.990 | 0.981 | 0.586 | 1.8e-96 | |
| TAIR|locus:2012250 | 369 | AT1G09480 [Arabidopsis thalian | 0.990 | 0.864 | 0.538 | 1.2e-88 | |
| TAIR|locus:2012265 | 322 | AT1G09490 [Arabidopsis thalian | 0.972 | 0.972 | 0.542 | 3.2e-88 | |
| TAIR|locus:2012315 | 322 | AT1G09510 [Arabidopsis thalian | 0.962 | 0.962 | 0.560 | 5.3e-88 | |
| TAIR|locus:2033394 | 319 | AT1G66800 [Arabidopsis thalian | 0.975 | 0.984 | 0.558 | 7.7e-87 | |
| TAIR|locus:2012280 | 325 | AT1G09500 [Arabidopsis thalian | 0.962 | 0.953 | 0.545 | 1.3e-86 | |
| TAIR|locus:2122093 | 326 | DRL1 "dihydroflavonol 4-reduct | 0.965 | 0.953 | 0.468 | 9.2e-68 | |
| TAIR|locus:2200427 | 344 | CCR1 "cinnamoyl coa reductase | 0.956 | 0.895 | 0.435 | 1.1e-66 | |
| TAIR|locus:2025832 | 332 | CCR2 "cinnamoyl coa reductase" | 0.953 | 0.924 | 0.421 | 1.2e-63 |
| TAIR|locus:2150315 AT5G19440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 192/323 (59%), Positives = 243/323 (75%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERL 60
M+ GE KVVCVTGASG++ASWLVK LL RGYTVKA+VRDP+ PK T+HL L+GA ERL
Sbjct: 1 MANSGEGKVVCVTGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERL 60
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
HLFKA+LLE+GSFDSA+DGC GVFHTASP + +PQA+++DPAV GTLNVL SCAK
Sbjct: 61 HLFKADLLEQGSFDSAIDGCHGVFHTASPFFNDAKDPQAELIDPAVKGTLNVLNSCAKAS 120
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRVV+TSS+ A+ N P TPDV +DETWFS+P LC+ +K WY L+KTLAE+AAWK A
Sbjct: 121 SVKRVVVTSSMAAVGYNGKPRTPDVTVDETWFSDPELCEASKMWYVLSKTLAEDAAWKLA 180
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIR 239
KE G+D+V I+P VIGP QP LN A ILNLING ++F + +V ++DV AHI+
Sbjct: 181 KEKGLDIVTINPAMVIGPLLQPTLNTSAAAILNLINGAKTFPNLSFGWVNVKDVANAHIQ 240
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTL-LRSGKLEEK-YQPTIKVSQERAKSL 297
A EVP A+GRY L V HS+I+ LRE YP L L ++E Y PT +VS+++ +SL
Sbjct: 241 AFEVPSANGRYCLVERVVHHSEIVNILRELYPNLPLPERCVDENPYVPTYQVSKDKTRSL 300
Query: 298 GINFTPWEVGVRGCIESLMEKGF 320
GI++ P +V ++ +ESL EKGF
Sbjct: 301 GIDYIPLKVSIKETVESLKEKGF 323
|
|
| TAIR|locus:2033904 AT1G51410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 190/324 (58%), Positives = 238/324 (73%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERL 60
MS E EEK VCVTGASG++ASW+VKLLL RGYTVKA+VRDPN P KTEHL L+GA ERL
Sbjct: 1 MSSE-EEKTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERL 59
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
LFKANLLEEGSFDSA+DGC+GVFHTASP +PQA+++DPAV GT+NVL SC K
Sbjct: 60 KLFKANLLEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLKTS 119
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRVVLTSSI A+ N P TP+ ++DETWF++P C+ +K WY L+KTLAE AAWKFA
Sbjct: 120 SVKRVVLTSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKLWYVLSKTLAENAAWKFA 179
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIR 239
KEN + LV+I+P VIGP QP LN A +L+LI G Q+F + +V ++DV AHI+
Sbjct: 180 KENNLQLVSINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTFPNATFGWVNVKDVANAHIQ 239
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL-EEK-YQPTIKVSQERAKSL 297
A E P A GRY L VA +S+++ L + YP K +EK Y PT KVS+E+A+SL
Sbjct: 240 AFENPDADGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKVSKEKAESL 299
Query: 298 GINFTPWEVGVRGCIESLMEKGFL 321
G+ F P EV ++ +ESL +KGF+
Sbjct: 300 GVEFVPLEVSIKETVESLRDKGFI 323
|
|
| TAIR|locus:2012250 AT1G09480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 175/325 (53%), Positives = 229/325 (70%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD-PNSPKTEHLRELDGATER 59
+M+G G K+VCVTGASG++ASW+VKLLL RGYTVKATVRD + KTEHL LDGA ER
Sbjct: 47 IMNGGG--KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKER 104
Query: 60 LHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
L LFKA+LLEE SF+ A++GCD VFHTASPV F +PQ +++DPA+ GT+NVL +C +
Sbjct: 105 LKLFKADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTMNVLNTCKET 164
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
S++RV+LTSS A+L + P+ V+DET+FS+P LC+E K WY L+K LAE AAW+F
Sbjct: 165 PSVRRVILTSSTAAVLFRQPPVEASDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEF 224
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP-YIFVEIRDVVYAHI 238
AK+NGID+V ++PG + GP QP LNF E+I++ ING F Y FV++RDV AHI
Sbjct: 225 AKDNGIDMVVLNPGFIFGPLLQPTLNFSVELIVDFINGKNPFNSRFYRFVDVRDVALAHI 284
Query: 239 RALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTI--KVSQERAKS 296
+ALE P A+GRY++ G + SDI+ LRE P L + EE + KV E+ K+
Sbjct: 285 KALETPSANGRYIIDGPIMSVSDIIDILRELLPDLCIADTNEESVMNEMLCKVCVEKVKN 344
Query: 297 LGINFTPWEVGVRGCIESLMEKGFL 321
LG+ FTP + +R I SL EK L
Sbjct: 345 LGVEFTPMKSSLRDTIVSLKEKCLL 369
|
|
| TAIR|locus:2012265 AT1G09490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
Identities = 172/317 (54%), Positives = 226/317 (71%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANL 67
KVVCVTGASG++ASW+VKLLL RGYTV ATVRDP + KTEHL LDGA ERL LFKA+L
Sbjct: 6 KVVCVTGASGYIASWIVKLLLLRGYTVNATVRDPKDKKKTEHLLALDGAKERLKLFKADL 65
Query: 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
LEE SFD A+DGCD VFHTASPV+F +PQ +++DPA+ GT+NVL +C +V S+KRV+L
Sbjct: 66 LEESSFDQAIDGCDAVFHTASPVLFTVTDPQTELIDPALKGTINVLNTCKQVSSVKRVIL 125
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
TSS A+L + P+ P+ ++DET+FS+P LC+E K WYSL+K LAE AAW+FAK+NGID+
Sbjct: 126 TSSTAAVLSRQPPIGPNDLVDETFFSDPSLCRETKNWYSLSKILAENAAWQFAKDNGIDM 185
Query: 188 VAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI-FVEIRDVVYAHIRALEVPKA 246
V ++PG + GP QP LN E+I++ ING F Y F ++RDV HI+ALE P A
Sbjct: 186 VVLNPGFICGPLLQPTLNMSVELIVDFINGKNPFNKRYYRFSDVRDVALVHIKALETPSA 245
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTI--KVSQERAKSLGINFTPW 304
+GRY++ G +DI+ LR+ +P L + EE + +V E+ K+LG+ FTP
Sbjct: 246 NGRYIIDGPNMSVNDIIDILRKLFPDLSIADTNEESEMNEMICQVCVEKVKNLGVEFTPM 305
Query: 305 EVGVRGCIESLMEKGFL 321
+ +R I SL EK L
Sbjct: 306 KSSLRDTIVSLKEKCLL 322
|
|
| TAIR|locus:2012315 AT1G09510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 176/314 (56%), Positives = 226/314 (71%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLFKANL 67
K+VCVTGASG+VASW+VKLLL RGYTV+ATVRDP+ K TEHL LDGA E+L LFKA+L
Sbjct: 6 KMVCVTGASGYVASWIVKLLLLRGYTVRATVRDPSDEKKTEHLLALDGAKEKLKLFKADL 65
Query: 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
LEEGSF+ A++GCD VFHTASPV +PQ +++DPAV GTLNVL++CAKV S+KRV++
Sbjct: 66 LEEGSFEQAIEGCDAVFHTASPVSLTVTDPQIELIDPAVKGTLNVLKTCAKVSSVKRVIV 125
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
TSS+ A+L E + P+ ++DE+ FS+P C E K WY+L+KTLAE+ AW+FAKE G+DL
Sbjct: 126 TSSMAAVLFREPTLGPNDLVDESCFSDPNFCTEKKLWYALSKTLAEDEAWRFAKEKGLDL 185
Query: 188 VAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP-YIFVEIRDVVYAHIRALEVPKA 246
V I+PG V+GP +P L F VI+ LI G +F + V++RDV AHI+A E P A
Sbjct: 186 VVINPGLVLGPLLKPSLTFSVNVIVELITGKDNFINKDFRLVDVRDVALAHIKAFETPSA 245
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE-EKYQPTI-KVSQERAKSLGINFTPW 304
+GRY++ G V +DI K LRE +P L K E + P I K+ E+ KSLGI FTP
Sbjct: 246 NGRYIIEGPVVTINDIEKILREFFPDLNLGNKGEASEIIPVIYKLCVEKVKSLGIEFTPT 305
Query: 305 EVGVRGCIESLMEK 318
E +R I SL EK
Sbjct: 306 EATLRDTILSLKEK 319
|
|
| TAIR|locus:2033394 AT1G66800 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 181/324 (55%), Positives = 232/324 (71%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERL 60
M+GEG KVVCVTGASG++ASW+VKLLL RGYTV+ATVR+P ++ KT HL L+GA+ERL
Sbjct: 1 MNGEG--KVVCVTGASGYIASWIVKLLLLRGYTVRATVRNPMDTKKTNHLLTLEGASERL 58
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
LFK++LLEEGSFD A++GCDGVFHTASPV +PQ +++DPAV GTLNVLR+CAKV
Sbjct: 59 KLFKSDLLEEGSFDQAIEGCDGVFHTASPVSLTVTDPQTEMIDPAVNGTLNVLRTCAKVS 118
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRV++TSS A L + P+ V+DET F++ + K WY +KTLAEE AW+FA
Sbjct: 119 SVKRVIVTSSTAATL----SINPNDVVDETVFTDLSVYLAMKAWYGYSKTLAEETAWRFA 174
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLING-DQSFAFPYIFVEIRDVVYAHIR 239
KENGIDLV ++PG VIGP QP LN+ EVI++LING + S +F Y F+++RDV AHI+
Sbjct: 175 KENGIDLVVMNPGNVIGPVLQPTLNYSVEVIVDLINGKNPSNSFYYRFMDVRDVSLAHIK 234
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKY--QPTIKVSQERAKSL 297
A EVP ASGRY+LA DI K L E +P L R K E + KV ++ KSL
Sbjct: 235 AFEVPSASGRYILADPDVTMKDIQKLLHELFPDLCRVDKDNENEVGEMAYKVCVDKLKSL 294
Query: 298 GINFTPWEVGVRGCIESLMEKGFL 321
GI FTP + ++ + SL E+ L
Sbjct: 295 GIEFTPIKESLKDTVVSLKERCLL 318
|
|
| TAIR|locus:2012280 AT1G09500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 173/317 (54%), Positives = 226/317 (71%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS-PKTEHLRELDGATERLHLFKANL 67
KVVCVTGASG++ASW+VKLLL RGYT+ ATVRDP KT+HL LDGA ERL LFKA+L
Sbjct: 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADL 65
Query: 68 LEEGSFDSAVDGCDGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L+EGSF+ A+DGC+ VFHTASPV I + +PQ ++++PAV GT+NVLR+C KV S+KRV+
Sbjct: 66 LDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVI 125
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
LTSS+ A+L ET + P+ V+DET+F+NP +E K+WY L+KTLAE+AAW+FAK+N ID
Sbjct: 126 LTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDNEID 185
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF-AFPYIFVEIRDVVYAHIRALEVPK 245
L+ ++PG V GP QP LNF VI+ L+ G F + FV++RDV AH++ALE P
Sbjct: 186 LIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETPS 245
Query: 246 ASGRYLLAGSVAQHSDILKFLREHYPTLL---RSGKLEEKYQPTIKVSQERAKSLGI-NF 301
A+GRY++ G V DI LRE +P L R+ + E T V ++ KSLGI F
Sbjct: 246 ANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEF 305
Query: 302 TPWEVGVRGCIESLMEK 318
TP E +R + SL EK
Sbjct: 306 TPTETSLRDTVLSLKEK 322
|
|
| TAIR|locus:2122093 DRL1 "dihydroflavonol 4-reductase-like1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 148/316 (46%), Positives = 202/316 (63%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
VCVTGASGF+ASWLVK LL GY V TVRDP N K HL +L+GA ERL L KA+L+E
Sbjct: 8 VCVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVKADLME 67
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
EGSFD+A+ GC GVFHTASPV+ + NP+ +I+ PA+ GTLNVLRSC K S+KRVVLTS
Sbjct: 68 EGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKRVVLTS 127
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
S + + + P + +DE+ +++ LCK + WY+L+KTLAE+AAWKF++ENGIDLV
Sbjct: 128 SSSTVRIRDD-FDPKIPLDESIWTSVELCKRFQVWYALSKTLAEQAAWKFSEENGIDLVT 186
Query: 190 IHPGTVIGPFFQPILNFGAEVILNLINGD-QSFAF--PYIFVEIRDVVYAHIRALEVPKA 246
+ P ++GP P L A +L L+ G+ + F + +V I DV HI E A
Sbjct: 187 VLPSFLVGPSLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVVFEHEAA 246
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINFTPWEV 306
GRY+ + +V +++ FL YP+L + E+ + + +SLG+ F E
Sbjct: 247 QGRYICSSNVISLEELVSFLSARYPSLPIPKRFEKLNRLHYDFDTSKIQSLGLKFKSLEE 306
Query: 307 GVRGCIESLMEKGFLS 322
CI SL+E+G+LS
Sbjct: 307 MFDDCIASLVEQGYLS 322
|
|
| TAIR|locus:2200427 CCR1 "cinnamoyl coa reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 139/319 (43%), Positives = 205/319 (64%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K VCVTGA G++ASW+VK+LL+RGYTVK TVR+P+ PK HLREL+G ERL L KA+L
Sbjct: 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQ 70
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + +A+DGCDGVFHTASPV +D+P+ +V+PAV G V+ + A+ +KRVV+T
Sbjct: 71 DYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAEA-KVKRVVIT 125
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SSIGA+ ++ P+ V+DE+ +S+ CK K WY K +AE+AAW+ AKE G+DLV
Sbjct: 126 SSIGAVYMDPN-RDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLV 184
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPKA 246
++P V+GP QP +N +L + G +++A +V++RDV AH+ E P A
Sbjct: 185 VLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSA 244
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIK---VSQERAKSLGINFTP 303
SGRYLLA S ++++ L + +P K +++ P K + ++ K LG+ FT
Sbjct: 245 SGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFTS 304
Query: 304 WEVGVRGCIESLMEKGFLS 322
+ + ++SL EKG L+
Sbjct: 305 TKQSLYDTVKSLQEKGHLA 323
|
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| TAIR|locus:2025832 CCR2 "cinnamoyl coa reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 134/318 (42%), Positives = 197/318 (61%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K+VCVTGA G++ASW+VKLLL+RGYTV+ TVR+P PK HLREL GA ERL L A+LL
Sbjct: 6 KLVCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKNNHLRELQGAKERLTLHSADLL 65
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + + +DGCDGVFHTASP ++D+P+ +++PAV G V+ + AK +KRVV T
Sbjct: 66 DYEALCATIDGCDGVFHTASP---MTDDPET-MLEPAVNGAKFVIDAAAKA-KVKRVVFT 120
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SSIGA+ +N T ++DE +S+ CK K WY K LAE++AW+ AK G+DLV
Sbjct: 121 SSIGAVYMNPNRDT-QAIVDENCWSDLDFCKNTKNWYCYGKMLAEQSAWETAKAKGVDLV 179
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPKA 246
++P V+GP Q +N IL + G +++A ++V++RDV H+ E P A
Sbjct: 180 VLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQVYVDVRDVALGHVLVYEAPSA 239
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIK---VSQERAKSLGINFTP 303
SGRY+LA + ++++ L + +P K ++ P K + ++ K LG+ F P
Sbjct: 240 SGRYILAETALHRGEVVEILAKFFPEYPLPTKCSDEKNPRAKPYKFTTQKIKDLGLEFKP 299
Query: 304 WEVGVRGCIESLMEKGFL 321
+ + ++SL EKG L
Sbjct: 300 IKQSLYESVKSLQEKGHL 317
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UT59 | YKJ7_SCHPO | 1, ., 1, ., 1, ., - | 0.3323 | 0.8975 | 0.8601 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00008931001 | SubName- Full=Chromosome undetermined scaffold_212, whole genome shotgun sequence; (326 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 322 | |||
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 0.0 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 1e-137 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 1e-127 | |
| PLN02989 | 325 | PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase | 1e-120 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 2e-84 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 4e-81 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 8e-81 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 7e-80 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 6e-78 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 2e-68 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 6e-50 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 7e-43 | |
| PLN02686 | 367 | PLN02686, PLN02686, cinnamoyl-CoA reductase | 2e-36 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-34 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 7e-31 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 8e-26 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 1e-24 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 3e-22 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 4e-17 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 8e-17 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 2e-16 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-16 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 6e-16 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 7e-16 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 3e-13 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 4e-13 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-12 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 1e-12 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 5e-12 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 2e-11 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-11 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 6e-10 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 7e-10 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 1e-09 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 1e-09 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-09 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 2e-09 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 4e-09 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 4e-09 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 5e-09 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 5e-09 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 5e-09 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 1e-08 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 3e-08 | |
| cd05231 | 259 | cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript | 5e-08 | |
| cd05280 | 325 | cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ | 8e-08 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 1e-07 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 2e-07 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 4e-07 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 6e-07 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 6e-07 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 6e-07 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 9e-07 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 9e-07 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 1e-06 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 1e-06 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 5e-06 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 5e-06 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 6e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 9e-06 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 1e-05 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-05 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-05 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 2e-05 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 2e-05 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 2e-05 | |
| TIGR02823 | 323 | TIGR02823, oxido_YhdH, putative quinone oxidoreduc | 2e-05 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 7e-05 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-04 | |
| PLN00141 | 251 | PLN00141, PLN00141, Tic62-NAD(P)-related group II | 1e-04 | |
| PLN02657 | 390 | PLN02657, PLN02657, 3,8-divinyl protochlorophyllid | 2e-04 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 2e-04 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 2e-04 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 2e-04 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 2e-04 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 3e-04 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 3e-04 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 3e-04 | |
| cd08288 | 324 | cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu | 4e-04 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 4e-04 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 4e-04 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 4e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 6e-04 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 7e-04 | |
| COG2910 | 211 | COG2910, COG2910, Putative NADH-flavin reductase [ | 9e-04 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 0.002 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 0.002 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 0.002 | |
| cd08289 | 326 | cd08289, MDR_yhfp_like, Yhfp putative quinone oxid | 0.002 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 0.004 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 537 bits (1385), Expect = 0.0
Identities = 217/325 (66%), Positives = 253/325 (77%), Gaps = 12/325 (3%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLHLFK 64
GE KVVCVTGASG++ASWLVKLLLQRGYTVKATVRDPN P KTEHL LDGA ERLHLFK
Sbjct: 2 GEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFK 61
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
ANLLEEGSFDS VDGC+GVFHTASP +PQA+++DPAV GTLNVLRSCAKV S+KR
Sbjct: 62 ANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKR 121
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
VV+TSS+ A+ N P+TPDVV+DETWFS+P C+E+K WY L+KTLAEEAAWKFAKENG
Sbjct: 122 VVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKENG 181
Query: 185 IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRALEV 243
ID+V I+P VIGP QP LN AE ILNLING Q+F Y +V++RDV AHI+A E+
Sbjct: 182 IDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEI 241
Query: 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEK------YQPTIKVSQERAKSL 297
P ASGRY L V +S+++K L E YPTL +L EK Y PT +VS+E+AKSL
Sbjct: 242 PSASGRYCLVERVVHYSEVVKILHELYPTL----QLPEKCADDKPYVPTYQVSKEKAKSL 297
Query: 298 GINFTPWEVGVRGCIESLMEKGFLS 322
GI F P EV ++ +ESL EKGFLS
Sbjct: 298 GIEFIPLEVSLKDTVESLKEKGFLS 322
|
Length = 322 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-137
Identities = 150/295 (50%), Positives = 203/295 (68%), Gaps = 10/295 (3%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
VCVTGASGF+ SWLVK LLQRGYTV+ATVRDP + K HL EL+GA ERL LFKA+LL+
Sbjct: 1 VCVTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
GSFD+A+DGCDGVFH ASPV F S++P+ ++++PAV GTLNVL +CAK S+KRVV TS
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFTS 120
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
S+ A++ N V+DE+ +S+ CK+ K WY+L+KTLAE+AAW+FA+ENG+DLV
Sbjct: 121 SVAAVVWNPNR-GEGKVVDESCWSDLDFCKKTKLWYALSKTLAEKAAWEFAEENGLDLVT 179
Query: 190 IHPGTVIGPFFQPILNFGAEVILNLINGD----QSFAFPYIFVEIRDVVYAHIRALEVPK 245
++P V+GPF QP LN +++IL+L+ G+ Q+ + V + DV AHI E P
Sbjct: 180 VNPSLVVGPFLQPSLNSSSQLILSLLKGNAEMYQNGSLAL--VHVDDVADAHILLYEKPS 237
Query: 246 ASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQ--PTIKVSQERAKSLG 298
ASGRY+ + V ++ L + YP K E+ +K+S ++ K LG
Sbjct: 238 ASGRYICSSHVVTRPELAALLAKKYPQYNIPTKFEDDQPGVARVKLSSKKLKDLG 292
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 365 bits (937), Expect = e-127
Identities = 175/324 (54%), Positives = 230/324 (70%), Gaps = 6/324 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERL 60
M+G G K+VCVTGASG++ASW+VKLLL RGYTVKATVRD + KTEHL LDGA ERL
Sbjct: 1 MNGGG--KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERL 58
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
LFKA+LLEE SF+ A++GCD VFHTASPV F +PQ +++DPA+ GT+NVL +C +
Sbjct: 59 KLFKADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETP 118
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
S+KRV+LTSS A+L + P+ + V+DET+FS+P LC+E K WY L+K LAE AAW+FA
Sbjct: 119 SVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFA 178
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF-AFPYIFVEIRDVVYAHIR 239
K+NGID+V ++PG + GP QP LNF E+I++ ING F Y FV++RDV AHI+
Sbjct: 179 KDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIK 238
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTI--KVSQERAKSL 297
ALE P A+GRY++ G + +DI+ LRE +P L + EE + KV E+ K+L
Sbjct: 239 ALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNL 298
Query: 298 GINFTPWEVGVRGCIESLMEKGFL 321
G+ FTP + +R I SL EK L
Sbjct: 299 GVEFTPMKSSLRDTILSLKEKCLL 322
|
Length = 322 |
| >gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 348 bits (893), Expect = e-120
Identities = 173/317 (54%), Positives = 226/317 (71%), Gaps = 7/317 (2%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS-PKTEHLRELDGATERLHLFKANL 67
KVVCVTGASG++ASW+VKLLL RGYT+ ATVRDP KT+HL LDGA ERL LFKA+L
Sbjct: 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADL 65
Query: 68 LEEGSFDSAVDGCDGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L+EGSF+ A+DGC+ VFHTASPV I + +PQ ++++PAV GT+NVLR+C KV S+KRV+
Sbjct: 66 LDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVI 125
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
LTSS+ A+L ET + P+ V+DET+F+NP +E K+WY L+KTLAE+AAW+FAK+N ID
Sbjct: 126 LTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDNEID 185
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF-AFPYIFVEIRDVVYAHIRALEVPK 245
L+ ++PG V GP QP LNF VI+ L+ G F + FV++RDV AH++ALE P
Sbjct: 186 LIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETPS 245
Query: 246 ASGRYLLAGSVAQHSDILKFLREHYPTLL---RSGKLEEKYQPTIKVSQERAKSLGI-NF 301
A+GRY++ G V DI LRE +P L R+ + E T V ++ KSLGI F
Sbjct: 246 ANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEF 305
Query: 302 TPWEVGVRGCIESLMEK 318
TP E +R + SL EK
Sbjct: 306 TPTETSLRDTVLSLKEK 322
|
Length = 325 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 258 bits (659), Expect = 2e-84
Identities = 139/319 (43%), Positives = 205/319 (64%), Gaps = 11/319 (3%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K VCVTGA G++ASW+VK+LL+RGYTVK TVR+P+ PK HLREL+G ERL L KA+L
Sbjct: 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQ 70
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + +A+DGCDGVFHTASPV +D+P+ +V+PAV G V+ + A+ +KRVV+T
Sbjct: 71 DYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAEA-KVKRVVIT 125
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SSIGA+ ++ P+ V+DE+ +S+ CK K WY K +AE+AAW+ AKE G+DLV
Sbjct: 126 SSIGAVYMDPN-RDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLV 184
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPKA 246
++P V+GP QP +N +L + G +++A +V++RDV AH+ E P A
Sbjct: 185 VLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPSA 244
Query: 247 SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQP---TIKVSQERAKSLGINFTP 303
SGRYLLA S ++++ L + +P K +++ P K + ++ K LG+ FT
Sbjct: 245 SGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFTS 304
Query: 304 WEVGVRGCIESLMEKGFLS 322
+ + ++SL EKG L+
Sbjct: 305 TKQSLYDTVKSLQEKGHLA 323
|
Length = 342 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 4e-81
Identities = 137/329 (41%), Positives = 195/329 (59%), Gaps = 15/329 (4%)
Query: 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHL 62
+++ VCVTGASGF+ SWLV LL+RGYTV+ATVRDP N K +HL +L GAT RL L
Sbjct: 1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTL 60
Query: 63 FKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
+KA+L EGSFD A+ GC GVFH A+P+ F S +P+ +++ P V G L+++++CAK ++
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTV 120
Query: 123 KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK--EW-YSLAKTLAEEAAWKF 179
+R+V TSS G + + E V DE +S+ C+ K W Y ++KTLAE+AAWK+
Sbjct: 121 RRIVFTSSAGTVNVEEHQKP---VYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKY 177
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ---SFAFPYIFVEIRDVVYA 236
A ENG+D ++I P V+GPF + L+LI G++ S FV + D+ A
Sbjct: 178 AAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNA 237
Query: 237 HIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTL---LRSGKLEEKYQPTIKVSQER 293
HI E P A GRY+ + A D+ K LRE YP R ++E + ++ S ++
Sbjct: 238 HIFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKS-VEFSSKK 296
Query: 294 AKSLGINFT-PWEVGVRGCIESLMEKGFL 321
LG F E G IE+ EKG +
Sbjct: 297 LTDLGFTFKYSLEDMFDGAIETCREKGLI 325
|
Length = 351 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 8e-81
Identities = 113/297 (38%), Positives = 165/297 (55%), Gaps = 11/297 (3%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLL 68
+V VTGA+GF+AS +V+ LL+ GY V+ TVR S K + L + G +RL + L
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60
Query: 69 -EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
++D A+ G D V H ASP F + + D++DPAV GTLNVL + S+KRVVL
Sbjct: 61 TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSVKRVVL 120
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW-YSLAKTLAEEAAWKFAKEN--G 184
TSS+ A + + T P V E +++ + K N Y +KTLAE+AAW+F KEN
Sbjct: 121 TSSVAA-VGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFVKENKPK 179
Query: 185 IDLVAIHPGTVIGP-FFQPILNFGAEVILNLINGDQSFA---FPYIFVEIRDVVYAHIRA 240
+L+ I+PG V+GP LN E+I L++G P+ +V++RDV AH+RA
Sbjct: 180 FELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDVRDVADAHVRA 239
Query: 241 LEVPKASG-RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKS 296
LE P+A+G R++++ +I LRE +P L +I V + KS
Sbjct: 240 LESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAPFPAPNPLMLSILVKFDNRKS 296
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 7e-80
Identities = 136/336 (40%), Positives = 187/336 (55%), Gaps = 48/336 (14%)
Query: 2 MSGEGEEK---VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE 58
M EG E CVTGA+G++ SWLVKLLLQRGYTV AT+RDP K+ HL +
Sbjct: 1 MELEGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA--KSLHLLSKWKEGD 58
Query: 59 RLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIF--------LSDNPQADIVDPAVMGTL 110
RL LF+A+L EEGSFD AV GCDGVFH A+ + F + + Q+ ++DPA+ GTL
Sbjct: 59 RLRLFRADLQEEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTL 118
Query: 111 NVLRSCAKVHSIKRVVLTSSIGAM-----------LLNETPMTPDVVIDETWFSNPVLCK 159
NVL+SC K ++KRVV TSSI + +++ET TP ID W +
Sbjct: 119 NVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTP---IDHVWNTKAS--- 172
Query: 160 ENKEW-YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218
W Y L+K L EEAA+K+AKENGIDLV++ TV GPF P + +V+L+ I GD
Sbjct: 173 ---GWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGD 229
Query: 219 QSFAFPYI-----------FVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLR 267
F + V I D+ AHI +E KA GRY+ S+++ L
Sbjct: 230 SKL-FSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLS 288
Query: 268 EHYPTLLRSGKLEEKYQPTIK--VSQERAKSLGINF 301
+ YP +L+E+ + +I +S ++ + LG +
Sbjct: 289 KEYPCSNIQVRLDEEKRGSIPSEISSKKLRDLGFEY 324
|
Length = 353 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 6e-78
Identities = 119/273 (43%), Positives = 165/273 (60%), Gaps = 12/273 (4%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
V VTGASGFVAS +V+ LL+RGY V+ATVRDP K HL +LD RL L A+L +
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVADLTD 60
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
E SFD + GC GVFH A+PV F S +P +++ PA+ GTLN L++ A S+KR VLTS
Sbjct: 61 EQSFDEVIKGCAGVFHVATPVSFSSKDPN-EVIKPAIGGTLNALKAAAAAKSVKRFVLTS 119
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE--W-YSLAKTLAEEAAWKFAKENGID 186
S G++L+ + P +V+DE ++ + K+ W Y+ +KTLAE+AAWKFA EN ID
Sbjct: 120 SAGSVLIPK-PNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNID 178
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFAFPYI----FVEIRDVVYAHIRA 240
L+ + P IG F + ++LI G++ S A I +V + D+ AHI
Sbjct: 179 LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVHVVDICLAHIGC 238
Query: 241 LEVPKASGRYLLAGSVAQHSDILKFLREHYPTL 273
LE+P A GRY+ + +LK LR+ YP+
Sbjct: 239 LELPIARGRYICTAGNFDWNTLLKTLRKKYPSY 271
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 2e-68
Identities = 115/276 (41%), Positives = 159/276 (57%), Gaps = 14/276 (5%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANL 67
K CV G +GF+AS L+KLLLQ+GY V TVRDP N K HLR L + L +F A+L
Sbjct: 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGD-LKIFGADL 68
Query: 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+E SF++ + GCD VFH A+PV F S++P+ D++ PA+ G NVL++CAK S+KRV+L
Sbjct: 69 TDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVIL 128
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAWKFAKENGI 185
TSS A+ +N+ T V+ ++ W L E W Y +KTLAE+AAWKFA+EN I
Sbjct: 129 TSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEENNI 188
Query: 186 DLVAIHPGTVIGPFFQP----------ILNFGAEVILNLINGDQSFAFPYIFVEIRDVVY 235
DL+ + P + GP L G E ++N + G Q + + DV
Sbjct: 189 DLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCR 248
Query: 236 AHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 271
AHI E ASGRY+ + ++ KFL + YP
Sbjct: 249 AHIFLAEKESASGRYICCAANTSVPELAKFLIKRYP 284
|
Length = 338 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-50
Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 22/298 (7%)
Query: 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE-HLRELDGATERLH 61
S + K VCV ASG+V WLVK LL RGYTV A V+ + E +R L ERL
Sbjct: 1 SFDESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLK 60
Query: 62 LFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQAD--IVDPAVMGTLNVLRSCAKV 119
+F + L+ S A+ GC G+F P SD P D +VD V NVL +CA+
Sbjct: 61 VFDVDPLDYHSILDALKGCSGLFCCFDPP---SDYPSYDEKMVDVEVRAAHNVLEACAQT 117
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
+I++VV TSS+ A++ + ++ +DE +S+ C++ K W++LAKTL+E+ AW
Sbjct: 118 DTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWAL 177
Query: 180 AKENGIDLVAIHPGTVIGPFF---QPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYA 236
A + G+++V+I+ G ++GP P L A++ N + + V++ +V A
Sbjct: 178 AMDRGVNMVSINAGLLMGPSLTQHNPYLKGAAQMYENGV---------LVTVDVNFLVDA 228
Query: 237 HIRALEVPKASGRYL-LAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQER 293
HIRA E + GRYL V D +K + P + E Q + +V Q+R
Sbjct: 229 HIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE--MQGS-EVYQQR 283
|
Length = 297 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 7e-43
Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 27/247 (10%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
VTGA+GF+ S LV+ LL +GY V+A VR LDG + + + +L + S
Sbjct: 3 VTGATGFLGSNLVRALLAQGYRVRALVRS-----GSDAVLLDG--LPVEVVEGDLTDAAS 55
Query: 73 FDSAVDGCDGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131
+A+ GCD VFH A+ ++ D + + V GT NVL + + ++RVV TSSI
Sbjct: 56 LAAAMKGCDRVFHLAAFTSLWAKDRKELYRTN--VEGTRNVLDAALE-AGVRRVVHTSSI 112
Query: 132 GAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIH 191
A+ PD IDET N + Y +K LAE + A E G+D+V ++
Sbjct: 113 AAL-----GGPPDGRIDETTPWNE---RPFPNDYYRSKLLAELEVLEAAAE-GLDVVIVN 163
Query: 192 PGTVIGPFFQPILNFGA--EVILNLINGDQSFAFP--YIFVEIRDVVYAHIRALEVPKAS 247
P V GP + +L+ +NG P FV++RDV HI A+E +
Sbjct: 164 PSAVFGP---GDEGPTSTGLDVLDYLNGKLPAYPPGGTSFVDVRDVAEGHIAAMEKGRRG 220
Query: 248 GRYLLAG 254
RY+L G
Sbjct: 221 ERYILGG 227
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-36
Identities = 76/215 (35%), Positives = 105/215 (48%), Gaps = 34/215 (15%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL--DGATERLH-- 61
E ++VCVTG F+ +V LL+ GY+V+ V E LRE+ G R +
Sbjct: 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQED--KEKLREMEMFGEMGRSNDG 108
Query: 62 --LFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA-------VMGTL-- 110
ANL E S A DGC GVFHT++ VDPA M L
Sbjct: 109 IWTVMANLTEPESLHEAFDGCAGVFHTSA------------FVDPAGLSGYTKSMAELEA 156
Query: 111 ----NVLRSCAKVHSIKRVVLTSSIGAMLLNET-PMTPDVVIDETWFSNPVLCKENKEWY 165
NV+ +C + S+++ V TSS+ A + + P VIDE +S+ C++NK WY
Sbjct: 157 KASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLWY 216
Query: 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF 200
+L K AE+AAW+ A+ G+ L I P V GP F
Sbjct: 217 ALGKLKAEKAAWRAARGKGLKLATICPALVTGPGF 251
|
Length = 367 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-34
Identities = 79/330 (23%), Positives = 132/330 (40%), Gaps = 45/330 (13%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
VTG +GF+ S LV+ LL G+ V+ R + LD + +L +
Sbjct: 5 VTGGAGFIGSHLVERLLAAGHDVRGLDRLRDG--------LDPLLSGVEFVVLDLTDRDL 56
Query: 73 FDSAVDGC-DGVFHTA--SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
D G D V H A S V + + A+ +D V GTLN+L + +KR V S
Sbjct: 57 VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFAS 115
Query: 130 SIGAMLLNETPMTPDVVIDETWF-SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
S+ + P + IDE P+ Y ++K AE+ +A+ G+ +V
Sbjct: 116 SVSVVY----GDPPPLPIDEDLGPPRPL------NPYGVSKLAAEQLLRAYARLYGLPVV 165
Query: 189 AIHPGTVIGPFFQPILNFGAEVILN----------LINGDQSFAFPYIFVEIRDVVYAHI 238
+ P V GP +P L+ G +I GD S +++V DV A +
Sbjct: 166 ILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYV--DDVADALL 223
Query: 239 RALEVPKASGRYLLAGSVAQHS--DILKFLREHYPTLLRSGKLEEK-----YQPTIKVSQ 291
ALE P G + + A+ + ++ + + E + + +
Sbjct: 224 LALENPDG-GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDI 282
Query: 292 ERAK-SLGIN-FTPWEVGVRGCIESLMEKG 319
+A+ +LG E G+ +E L++K
Sbjct: 283 SKARAALGWEPKVSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 7e-31
Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 27/266 (10%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
V VTGA+GFV S +V+LLL++G V+ VR P S + +L LD + + +L
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVR-PTSDR-RNLEGLDV-----EIVEGDLR 53
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ S AV GC +FH A+ + +P+ + V GT N+LR+ + ++RVV T
Sbjct: 54 DPASLRKAVAGCRALFHVAADYRLWAPDPEE-MYAANVEGTRNLLRAALEA-GVERVVYT 111
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SS+ + + DET P + Y +K LAE+AA + A E G+ +V
Sbjct: 112 SSVATLGVRGDG----TPADET---TPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVV 164
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP-YI-----FVEIRDVVYAHIRALE 242
++P T IGP G +I++ +NG P Y+ V + DV H+ ALE
Sbjct: 165 IVNPSTPIGPRDIKPTPTG-RIIVDFLNGK----MPAYVDTGLNLVHVDDVAEGHLLALE 219
Query: 243 VPKASGRYLLAGSVAQHSDILKFLRE 268
+ RY+L G IL L E
Sbjct: 220 RGRIGERYILGGENLTLKQILDKLAE 245
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-26
Identities = 67/259 (25%), Positives = 100/259 (38%), Gaps = 42/259 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV+ LLQ GY V R S T R+ + +L +
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSE--------SLNTGRIRFHEGDLTDP 52
Query: 71 GSFDSAVDGC--DGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ + + D V H A+ + S AD + V+GTL +L + + +KR V
Sbjct: 53 DALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARR-AGVKRFVF 111
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
SS + D I E P+ Y+ AK AE +A+ G+
Sbjct: 112 ASS-SEVY----GDVADPPITEDTPLGPL------SPYAAAKLAAERLVEAYARAYGLRA 160
Query: 188 VAIHPGTVIGPFFQPILNFGAEVILNLI-------------NGDQSFAFPYIFVEIRDVV 234
V + V GP F VI LI +G Q +++V+ DV
Sbjct: 161 VILRLFNVYGPG--NPDPFVTHVIPALIRRILEGKPILLLGDGTQR--RDFLYVD--DVA 214
Query: 235 YAHIRALEVPKASGRYLLA 253
A + ALE P Y +
Sbjct: 215 RAILLALEHPDGGEIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-24
Identities = 58/247 (23%), Positives = 87/247 (35%), Gaps = 60/247 (24%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV+ LL+RG+ V R
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 71 GSFDSAVDGCDGVFHTASP--VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
D V H A+ V DNP D + V+GTLN+L + K +KR V
Sbjct: 32 ----------DVVVHLAALVGVPASWDNPDEDF-ETNVVGTLNLLEAARK-AGVKRFVYA 79
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SS + +E P+ Y ++K AE + + G+ +V
Sbjct: 80 SSASV-----YGSPEGLPEEEETPPRPLSP------YGVSKLAAEHLLRSYGESYGLPVV 128
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI------FVEIRDVVYAHIRALE 242
+ V GP +P L+ + + F+ + DVV A + ALE
Sbjct: 129 ILRLANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALE 188
Query: 243 VPKASGR 249
P G
Sbjct: 189 NPLEGGG 195
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-22
Identities = 75/257 (29%), Positives = 112/257 (43%), Gaps = 29/257 (11%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V VTGA GF+ S L + LL+ G+ V+A NS + L + +R H ++ +
Sbjct: 2 VLVTGADGFIGSHLTERLLREGHEVRALD-IYNSFNSWGLLDNAV-HDRFHFISGDVRDA 59
Query: 71 GSFDSAVDGCDGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
+ V CD VFH A+ + I S V+ V GTLNVL + A V KRVV TS
Sbjct: 60 SEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEA-ACVLYRKRVVHTS 118
Query: 130 SIGAMLLNET-PMTPDVVIDETWFSNPVLCKENKEW-YSLAKTLAEEAAWKFAKENGIDL 187
+ +E DV IDE +P+L YS +K A+ A+ + + G+ +
Sbjct: 119 T------SEVYGTAQDVPIDE---DHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPV 169
Query: 188 VAIHPGTVIGPFFQPILNFGAEVI---------LNLINGDQSFAFPYIFVEIRDVVYAHI 238
I P GP Q +I +NL +G + F + ++D I
Sbjct: 170 TIIRPFNTYGP-RQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNF----VKDTARGFI 224
Query: 239 RALEVPKASGRYLLAGS 255
L+ +A G + GS
Sbjct: 225 DILDAIEAVGEIINNGS 241
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 4e-17
Identities = 66/251 (26%), Positives = 98/251 (39%), Gaps = 35/251 (13%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVR--DPNSPKTEHLRELDGATERLHLFKANLL 68
V VTG SGF LVK LL+RG VR D P + K ++
Sbjct: 2 VLVTGGSGFFGERLVKQLLERG---GTYVRSFDIAPPGEALSAW---QHPNIEFLKGDIT 55
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + A+ G D VFHTA+ V V+ V GT NVL +C + +++ V T
Sbjct: 56 DRNDVEQALSGADCVFHTAAIVPLAGPRDLYWEVN--VGGTQNVLDACQRC-GVQKFVYT 112
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SS + + DET P + + Y+ K +AE + + +
Sbjct: 113 SSSSVIFGGQNIHNG----DETL---PYP-PLDSDMYAETKAIAEIIVLEANGRDDLLTC 164
Query: 189 AIHPGTVIGP---FFQPILNFGAEVILN----LINGDQSFAFPYIFVEIRDVVYAHI--- 238
A+ P + GP PIL E + G + + +V ++ +AHI
Sbjct: 165 ALRPAGIFGPGDQGLVPILF---EWAEKGLVKFVFGRGNNLVDFTYVH--NLAHAHILAA 219
Query: 239 RALEVPK-ASG 248
AL K SG
Sbjct: 220 AALVKGKTISG 230
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 8e-17
Identities = 72/258 (27%), Positives = 110/258 (42%), Gaps = 43/258 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V VTG +GF+ S LV+ LL+RG+ V V D S T L + + ++ ++
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEV--IVLDNLS--TGKKENLPEVKPNVKFIEGDIRDD 57
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSCAKVHSIKR 124
+ A +G D VFH A+ + P++ I DP V+GTLN+L + K +KR
Sbjct: 58 ELVEFAFEGVDYVFHQAA----QASVPRS-IEDPIKDHEVNVLGTLNLLEAARKAG-VKR 111
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
V SS ++ + + P DE NP+ Y+++K E FA+ G
Sbjct: 112 FVYASS-SSVYGDPPYL-P---KDEDHPPNPL------SPYAVSKYAGELYCQVFARLYG 160
Query: 185 IDLVAIHPGTVIGPFFQP-------ILNFGAEVILNL---INGD--QSFAFPYIFVEIRD 232
+ V++ V GP P I F + I GD Q+ F Y + D
Sbjct: 161 LPTVSLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTY----VED 216
Query: 233 VVYAHIRALEVPKASGRY 250
VV A++ A Y
Sbjct: 217 VVEANLLAATAGAGGEVY 234
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 72/281 (25%), Positives = 109/281 (38%), Gaps = 50/281 (17%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
V VTGA+GF+ LV LL RG V+ VR+ N+ + L EL
Sbjct: 2 VLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLAELPDID------------ 49
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSD---NPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
SF G D V H A+ V ++D +P +D T + R+ A +KR V
Sbjct: 50 --SFTDLFLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARA-AARQGVKRFV 106
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
SS+ T P DET P + Y +K AE A + +G++
Sbjct: 107 FLSSVKVN-GEGTVGAP---FDETDPPAPQ------DAYGRSKLEAERALLELGASDGME 156
Query: 187 LVAIHPGTVIGPFFQPILNF---------GAEVILNLINGDQSFAFPYIFVEIRDVVYAH 237
+V + P V GP + NF G + + +S V + ++V A
Sbjct: 157 VVILRPPMVYGPGVRG--NFARLMRLIDRGLPLPPGAVKNRRS------LVSLDNLVDAI 208
Query: 238 IRALEVPKASGRYLLAGSVAQHS--DILKFLRE--HYPTLL 274
+ +PKA+ L S +++ +R PT L
Sbjct: 209 YLCISLPKAANGTFLVSDGPPVSTAELVDEIRRALGKPTRL 249
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-16
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANL---- 67
VTG +GF+ LVK LL+ G+ V VR + + E G +R+ + + +L
Sbjct: 3 VTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQPN 62
Query: 68 --LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
L + D V H A+ F + N A + GT +VL A++ I+R
Sbjct: 63 LGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRT--NIDGTEHVLELAARLD-IQRF 119
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
S+ + I ET + + K Y +K AE+ A + I
Sbjct: 120 HYVSTAY------VAGNREGNIRETELNPG---QNFKNPYEQSKAEAEQLVRAAATQ--I 168
Query: 186 DLVAIHPGTVIGP 198
L P V+G
Sbjct: 169 PLTVYRPSIVVGD 181
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 6e-16
Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 40/258 (15%)
Query: 13 VTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
VTG GF+ +V+LLL+ G V+ + E +L T + ++ ++
Sbjct: 2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVIT----YIEGDVTDK 57
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
A+ G D V HTA+ + + I+ V GT NVL +C K ++ +V TSS
Sbjct: 58 QDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVK-AGVRVLVYTSS 116
Query: 131 IGAMLLNETPMTPDVVI--DETW--FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+ + N ++ DET S Y +K LAE+ K NG
Sbjct: 117 MEVVGPN---SYGQPIVNGDETTPYESTHQDP------YPESKALAEKLV---LKANGST 164
Query: 187 L--------VAIHPGTVIGPFFQPILNFGAEVILN----LINGDQSFAFPYIFVEIRDVV 234
L A+ P + G + F ++ N GD++ ++V +V
Sbjct: 165 LKNGGRLYTCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVG--NVA 222
Query: 235 YAHI---RALEVPKASGR 249
+AHI RAL+ PK +
Sbjct: 223 WAHILAARALQDPKKASS 240
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 7e-16
Identities = 66/239 (27%), Positives = 96/239 (40%), Gaps = 45/239 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V V GA+G V +V+ LL RGY V+A VRDP +L+ A + +L +
Sbjct: 2 VLVVGATGKVGRHVVRELLDRGYQVRALVRDP-----SQAEKLEAAG--AEVVVGDLTDA 54
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
S +A++G D V A P+ + VD G +N++ AK +KR VL SS
Sbjct: 55 ESLAAALEGIDAVISAAG--SGGKGGPRTEAVD--YDGNINLID-AAKKAGVKRFVLVSS 109
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
IGA + P P + Y AK AE+ + + +G+D +
Sbjct: 110 IGA----DKPSHPLEALGP---------------YLDAKRKAED----YLRASGLDYTIV 146
Query: 191 HPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGR 249
P G G V+ GD + I DV AL+ P A G+
Sbjct: 147 RP----GGLTDDPAGTGRVVLG----GDGTRLDGPI--SRADVAEVLAEALDTPAAIGK 195
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 20/196 (10%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ VTGA GF+ S L + L G+ V+ D SP EH+ + E HL +L
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGA--DWKSP--EHMTQPTDDDE-FHL--VDLR 53
Query: 69 EEGSFDSAVDGCDGVFHTASPV---IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
E + A +G D VFH A+ + ++ N A I+ + N+L + A+++ ++R
Sbjct: 54 EMENCLKATEGVDHVFHLAADMGGMGYIQSNH-AVIMYNNTLINFNMLEA-ARINGVERF 111
Query: 126 VLTSS--IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
+ SS + + ++ W + P ++ Y K E + ++
Sbjct: 112 LFASSACVYPEFKQLETTVVRLREEDAWPAEP------QDAYGWEKLATERLCQHYNEDY 165
Query: 184 GIDLVAIHPGTVIGPF 199
GI+ + + GP
Sbjct: 166 GIETRIVRFHNIYGPR 181
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 49/237 (20%), Positives = 79/237 (33%), Gaps = 65/237 (27%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
V GA+G LVK LL RG+ V A R+P+ + + +L +
Sbjct: 3 VIGATGKTGRRLVKELLARGHQVTALSRNPSK----------APAPGVTPVQKDLFDLAD 52
Query: 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG 132
A+ G D V SD G ++L + A+ ++R+V+ S+ G
Sbjct: 53 LAEALAGVDAVVDAFGARPDDSD------------GVKHLLDAAAR-AGVRRIVVVSAAG 99
Query: 133 A-------MLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
L++ P+ P Y+ AK AEE + +G+
Sbjct: 100 LYRDEPGTFRLDDAPLFPP--------------------YARAKAAAEEL----LRASGL 135
Query: 186 DLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 242
D + P G F G + + + DV A + LE
Sbjct: 136 DWTIVRP----GALFDE---EGETYEIGTEGDPAGES----SISRADVAAALLDELE 181
|
Length = 182 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLE 69
V VTGA GF+ S LV+ L+++GY V+A V + L +++ + ++ +
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDKIEVVTGDIRD 60
Query: 70 EGSFDSAVDGCDGVFHTAS----PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
S A+ GCD VFH A+ P +++ P + VD V GTLNVL++ + +++V
Sbjct: 61 PDSVRKAMKGCDVVFHLAALIAIPYSYIA--PDS-YVDTNVTGTLNVLQAARDL-GVEKV 116
Query: 126 VLTSS 130
V TS+
Sbjct: 117 VHTST 121
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-12
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 32/188 (17%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
+ GA+G S +V+ L RG+ V A VRDP EH E+L + + ++L+
Sbjct: 4 IIGATGRTGSAIVREALARGHEVTALVRDPAKLPAEH--------EKLKVVQGDVLDLED 55
Query: 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVM--GTLNVLRSCAKVHSIKRVVLTSS 130
A++G D V + D+ + GT N++ S K +KR+++
Sbjct: 56 VKEALEGQDAVI-----SAL---GTRNDLSPTTLHSEGTRNIV-SAMKAAGVKRLIVVGG 106
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
G + +V+D F +A+ A K +E+G+D A+
Sbjct: 107 AG---SLDDRPKVTLVLDTLLF--------PPALRRVAEDHARML--KVLRESGLDWTAV 153
Query: 191 HPGTVIGP 198
P +
Sbjct: 154 RPPALFDG 161
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 28/240 (11%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V G SGF+ LV+ LL+RG TV + T L ++ R+ +L +
Sbjct: 2 CLVVGGSGFLGRHLVEQLLRRG---NPTVHVFDIRPTFELDP--SSSGRVQFHTGDLTDP 56
Query: 71 GSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ A + G + VFHTASP +D+ V+ V GT NV+ +C K +K++V T
Sbjct: 57 QDLEKAFNEKGPNVVFHTASPDHGSNDDLY-YKVN--VQGTRNVIEACRKC-GVKKLVYT 112
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK--ENGID 186
SS + N + + DE+ P K + Y+ K LAE+ K A E+G+
Sbjct: 113 SSASVV-FNGQDI---INGDESL---PYPDKHQ-DAYNETKALAEKLVLK-ANDPESGLL 163
Query: 187 LVAIHPGTVIGP----FFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 242
A+ P + GP +L GD + F + +VE +V +AHI A +
Sbjct: 164 TCALRPAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVE--NVAHAHILAAD 221
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-11
Identities = 70/269 (26%), Positives = 107/269 (39%), Gaps = 52/269 (19%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKAT-VRD--PNSPKTEHLRELDGATERLHLFKAN 66
V VTG GF+ +++LLL+R +K V D EH + G T + + +
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKT-YVTDIEGD 59
Query: 67 LLEEGSFDSAVDGCDGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+ + A G V HTA+ V +F N + ++ + V GT VL +C + ++KR+
Sbjct: 60 IKDLSFLFRACQGVSVVIHTAAIVDVFGPPNYE-ELEEVNVNGTQAVLEACVQN-NVKRL 117
Query: 126 VLTSSI--------GAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEA-- 175
V TSSI G + N TP ++T Y+ +K LAE
Sbjct: 118 VYTSSIEVAGPNFKGRPIFNGVEDTP---YEDTS----------TPPYASSKLLAENIVL 164
Query: 176 ---AWKFAKENGIDLV--AIHPGTVIG---PFFQPILNFGAEVILNLINGDQSFAFPYIF 227
+ G LV A+ P + G F I +F NG
Sbjct: 165 NANGAPL--KQGGYLVTCALRPMYIYGEGSHFLTEIFDFLL-----TNNGWLFPRIKGSG 217
Query: 228 VEIR----DVVYAHI---RALEVPKASGR 249
V +V +AHI +AL+VP + R
Sbjct: 218 VNPLVYVGNVAWAHILAAKALQVPDKAIR 246
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-11
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ + GA+GF+ L + LL++G+ V VR+ E E + + + +L +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQ-------EPVAVVEGDLRDL 53
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
S AV G D V H A D + D+ GT NVL AK +K + SS
Sbjct: 54 DSLSDAVQGVDVVIHLAGAPRDTRDFCEVDVE-----GTRNVL-EAAKEAGVKHFIFISS 107
Query: 131 IGAM 134
+GA
Sbjct: 108 LGAY 111
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-10
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV LL+ G V V D S E + + K +LL+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEV--VVVDNLSSGRRENIEPEFENKAFRFVKRDLLDT 59
Query: 71 GSFDSAVDGCDGVFHTA--SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ A D VFH A V + +P D+ + V+ T NVL + +KR+V
Sbjct: 60 -ADKVAKKDGDTVFHLAANPDVRLGATDPDIDL-EENVLATYNVLEAMRAN-GVKRIVFA 116
Query: 129 SSIGAMLLNETPMTP 143
SS + + E + P
Sbjct: 117 SS--STVYGEAKVIP 129
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-10
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 13 VTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEG 71
V GA+G +V+ LL+ G+ V+A RDP+SP + L A + + + +L +
Sbjct: 3 VFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKAL-----AAPGVEVVQGDLDDPE 57
Query: 72 SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
S ++A+ G GVF ++D +A D G NV+ + + ++ V +S
Sbjct: 58 SLEAALKGVYGVFL-------VTDFWEAGGEDEIAQGK-NVVDAAKRAG-VQHFVFSS 106
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 64/270 (23%), Positives = 103/270 (38%), Gaps = 68/270 (25%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKA-----TVRDPNSPKTEHLRELDGATERLHLF 63
K + +TG +GF+ S L LL+ G+ V T R N EHL
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRN---IEHLI----GHPNFEFI 53
Query: 64 KANLLE--EGSFDSAVDGCDGVFHTASPV--IFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ ++ E D ++H A P + NP + V+GTLN+L +V
Sbjct: 54 RHDVTEPLYLEVDQ-------IYHLACPASPVHYQYNP-IKTLKTNVLGTLNMLGLAKRV 105
Query: 120 HSIKRVVLTSS---IGAMLLNETPMTPDVVIDETWFS--NPV---LCKENKEWYSLAKTL 171
+ RV+L S+ G ++ P E+++ NP+ C Y K +
Sbjct: 106 GA--RVLLASTSEVYGDPEVHPQP--------ESYWGNVNPIGPRSC------YDEGKRV 149
Query: 172 AEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI-------------NGD 218
AE + +++G+D+ GP P N G V+ N I +G
Sbjct: 150 AETLCMAYHRQHGVDVRIARIFNTYGPRMHP--NDG-RVVSNFIVQALRGEPITVYGDGT 206
Query: 219 QSFAFPYIFVEIRDVVYAHIRALEVPKASG 248
Q+ +F Y + D+V IR + G
Sbjct: 207 QTRSFQY----VSDLVEGLIRLMNSDYFGG 232
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVR---DPNSPKTEHLRELDGATERLHLFKAN 66
+TG +G S+L + LL++GY V VR N+ + +HL R+ L +
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYINKD---RITLHYGD 57
Query: 67 LLEEGSFDSAVDGC--DGVFHTA----SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
L + S A++ D ++H A V F D+P+ + +GTLN+L + +
Sbjct: 58 LTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSF--DDPE-YTAEVNAVGTLNLLEAIRILG 114
Query: 121 SIKRVVLTSS------IGAMLLNET----PMTP 143
R SS + + +ET P +P
Sbjct: 115 LDARFYQASSSEEYGKVQELPQSETTPFRPRSP 147
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 54/216 (25%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V VTG +GF SWL L + G V DP + + ++ + ++
Sbjct: 5 KRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPT-NPNLFELANLD-NKISSTRGDIR 62
Query: 69 EEGSFDSAVDGC--DGVFH-TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+ + A+ + VFH A P++ LS + + VMGT+N+L + + S+K V
Sbjct: 63 DLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSVKAV 122
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW---------------YSLAKT 170
V +S D+ C ENKEW YS +K
Sbjct: 123 VNVTS-----------------DK--------CYENKEWGWGYRENDPLGGHDPYSSSKG 157
Query: 171 LAE--EAAWK---FAKEN----GIDLVAIHPGTVIG 197
AE ++++ F EN GI + + G VIG
Sbjct: 158 CAELIISSYRNSFFNPENYGKHGIAIASARAGNVIG 193
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 59/251 (23%), Positives = 86/251 (34%), Gaps = 35/251 (13%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V VTGA+GF+ S +V+ L+ G+ V R S E GA + + +L +
Sbjct: 3 VFVTGATGFIGSAVVRELVAAGHEVVGLAR---SDAGAAKLEAAGAQ----VHRGDLEDL 55
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADI-VDPAVMGTL-NVLRSCAKVHSIKRVVLT 128
A D V H A DN VD + L LR + K ++ T
Sbjct: 56 DILRKAAAEADAVIHLAF--THDFDNFAQACEVDRRAIEALGEALR-----GTGKPLIYT 108
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
S I + P +E P A+ ++E AA + A+ V
Sbjct: 109 SGIWLL----GPTGGQEEDEEAPDDPPT---------PAARAVSEAAALELAERGVRASV 155
Query: 189 AIHPGTVIGP----FFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244
P V G F ++ E ++ GD +P V D + ALE
Sbjct: 156 VRLPPVVHGRGDHGFVPMLIAIAREKGVSAYVGDGKNRWP--AVHRDDAARLYRLALEKG 213
Query: 245 KASGRYLLAGS 255
KA Y
Sbjct: 214 KAGSVYHAVAE 224
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 44/265 (16%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
VV V GA+GF+ ++V L +RG V R + L D ++ + +L
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCE-AYARRLLVMGDLG--QVLFVEFDLR 57
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
++ S A++G D V + L + D V G + ++ + ++R++
Sbjct: 58 DDESIRKALEGSDVVINLVG---RLYETKNFSFEDVHVEGPERLAKAAKE-AGVERLIHI 113
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
S++GA + + Y +K EEA +E +
Sbjct: 114 SALGA---DANSPSK---------------------YLRSKAEGEEA----VREAFPEAT 145
Query: 189 AIHPGTVIGP---FFQPILNFGAEV-ILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244
+ P V G F A + LI G Q+ P ++V DV A RAL+ P
Sbjct: 146 IVRPSVVFGREDRFLNRFAKLLAFLPFPPLIGGGQTKFQP-VYVG--DVAEAIARALKDP 202
Query: 245 KASGR-YLLAG-SVAQHSDILKFLR 267
+ G+ Y L G V +++++ LR
Sbjct: 203 ETEGKTYELVGPKVYTLAELVELLR 227
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-09
Identities = 60/251 (23%), Positives = 89/251 (35%), Gaps = 49/251 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V + G +GF+ S LV LL+ G V+ R EL K +
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPY------ELPLGGVDYI--KGDYENR 53
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSCAKVHSIKR 124
+SA+ G D V H AS + NP +P V T+ +L +CA I +
Sbjct: 54 ADLESALVGIDTVIHLAS-----TTNPATSNKNPILDIQTNVAPTVQLLEACAAA-GIGK 107
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
++ SS G + P I E+ + P+ Y ++K E+ + G
Sbjct: 108 IIFASSGGTVYGVPEQ-LP---ISESDPTLPI------SSYGISKLAIEKYLRLYQYLYG 157
Query: 185 IDLVAIHPGT-------------VIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231
+D + VI IL E I I GD YI+ I
Sbjct: 158 LDYTVLRISNPYGPGQRPDGKQGVIPIALNKILR--GEPI--EIWGDGESIRDYIY--ID 211
Query: 232 DVVYAHIRALE 242
D+V A + L
Sbjct: 212 DLVEALMALLR 222
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 25/143 (17%)
Query: 9 KVVCVTGAS-GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKAN 66
KVV +TG S G + L L +GY V AT R+P + L L + L + + +
Sbjct: 1 KVVLITGCSSGIGLA-LALALAAQGYRVIATARNP-----DKLESLGELLNDNLEVLELD 54
Query: 67 LLEEGSFDSAVDGC-------DGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLR 114
+ +E S +AV D + + A P+ S ++ + V G L V R
Sbjct: 55 VTDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLRVTR 114
Query: 115 SCAKVHSIK----RVVLTSSIGA 133
+ K R+V SS+
Sbjct: 115 AFLP-LMRKQGSGRIVNVSSVAG 136
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-09
Identities = 70/263 (26%), Positives = 108/263 (41%), Gaps = 49/263 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKA--TVRDPNSPKTEHLR-ELDGATERLHLFKA 65
+ VTGA+GF+ + K LL+RG V + D + + R EL G + K
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 66 N---------LLEEGSFDSAVDGCDGVFHTASP--VIFLSDNPQADIVDPAVMGTLNVLR 114
+ L ++ FD+ V H A+ V + +NP A VD ++G LN+L
Sbjct: 61 DLEDREALRRLFKDHEFDA-------VIHLAAQAGVRYSLENPHA-YVDSNIVGFLNLLE 112
Query: 115 SCAKVHSIKRVVLTSSIGAMLLNET-PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE 173
C + +K +V SS LN P + D +D P+ Y+ K E
Sbjct: 113 LC-RHFGVKHLVYASSSSVYGLNTKMPFSEDDRVDH-----PI------SLYAATKKANE 160
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQP---ILNFGAEVILNLI------NGDQSFAFP 224
A ++ GI + TV GP+ +P + F + IL +G+ S F
Sbjct: 161 LMAHTYSHLYGIPTTGLRFFTVYGPWGRPDMALFLF-TKAILEGKPIDVFNDGNMSRDFT 219
Query: 225 YIFVEIRDVVYAHIRALEVPKAS 247
Y I D+V +RAL+ P
Sbjct: 220 Y----IDDIVEGVVRALDTPAKP 238
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-09
Identities = 53/248 (21%), Positives = 81/248 (32%), Gaps = 49/248 (19%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
VTGA+GFV +V+ LL RG+ V+A VR+P L G L +L + S
Sbjct: 5 VTGATGFVGGAVVRELLARGHEVRAAVRNPE--AAAALA--GGVEVVL----GDLRDPKS 56
Query: 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG 132
+ G DGV + + V + + +K V S +G
Sbjct: 57 LVAGAKGVDGVLLISG-----LLDGSDAFRAVQVTAVVRAAEAAG--AGVKHGVSLSVLG 109
Query: 133 AMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHP 192
A + + + AK E A +GI +
Sbjct: 110 ADAASPSA------------------------LARAKAAVEAALR----SSGIPYTTLRR 141
Query: 193 GTVIGPFFQPILNFG-AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGR-Y 250
+ A + + G + + + DV A AL+ P +GR Y
Sbjct: 142 AAFYLGAGAAFIEAAEAAGLPVIPRGIGRLS----PIAVDDVAEALAAALDAPATAGRTY 197
Query: 251 LLAGSVAQ 258
LAG A
Sbjct: 198 ELAGPEAL 205
|
Length = 275 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V VTGA+G+V LV LLQ G+ V+A VR P + ER+ + + +L +
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPEK-LADRPWS-----ERVTVVRGDLEDP 54
Query: 71 GSFDSAVDGCDGVFHTASPVIFL--SDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
S +A++G D + +L S D + N R+ +KR++
Sbjct: 55 ESLRAALEGIDTAY-------YLVHSMGSGGDFEEADRRAARNFARAARAA-GVKRIIYL 106
Query: 129 SSIGA 133
+
Sbjct: 107 GGLIP 111
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 55/250 (22%), Positives = 89/250 (35%), Gaps = 60/250 (24%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
VTGA+G + + +V+LLL + +V A VR+P K DG + + + + +
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKA---FAADGV----EVRQGDYDDPET 55
Query: 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG 132
+ A +G D + SP Q N + + + +K +V S+ G
Sbjct: 56 LERAFEGVDRLL-LISPSDLEDRIQQH----------KNFIDAAKQAG-VKHIVYLSASG 103
Query: 133 AMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHP 192
A + + D E K+ + +GI + P
Sbjct: 104 ADEDSPFLLARDHGATE----------------------------KYLEASGIPYTILRP 135
Query: 193 GTVIGPFFQPILNFGAEVILN----LINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG 248
G F +L F ++ GD A FV+ RD+ A AL P G
Sbjct: 136 GW----FMDNLLEFLPSILEEGTIYGPAGDGKVA----FVDRRDIAEAAAAALTEPGHEG 187
Query: 249 R-YLLAGSVA 257
+ Y L G A
Sbjct: 188 KVYNLTGPEA 197
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
VTGA+G + S + LL+ G V+A VR + L GA + +L +
Sbjct: 3 VTGATGRIGSKVATTLLEAGRPVRALVRSDE--RAAALAAR-GA----EVVVGDLDDPAV 55
Query: 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG 132
+A+ G D VF A P + + + V A S + +KRVV SS+G
Sbjct: 56 LAAALAGVDAVFFLAPPA--PTADARPGYVQAA-----EAFASALREAGVKRVVNLSSVG 108
Query: 133 AMLLNETP 140
A + +
Sbjct: 109 ADPESPSG 116
|
Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259 |
| >gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 8e-08
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
E+ V VTGA+G V S V +L + GYTV A + ++L+ L GA+E L
Sbjct: 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEE--QADYLKSL-GASEVLDREDLL 202
Query: 67 L-----LEEGSFDSAVD 78
L + + A+D
Sbjct: 203 DESKKPLLKARWAGAID 219
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA 65
E+ +C+TGA GF+AS + + L G+ + A+ + K EH+ E D HL
Sbjct: 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIAS----DWKKNEHMSE-DMFCHEFHLVDL 73
Query: 66 NLLEEGSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
++E G D VF+ A+ + F+ N + I+ M + N+L + +++ +
Sbjct: 74 RVMENCL--KVTKGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMLEAA-RINGV 129
Query: 123 KRVVLTSSIGAMLLNE-TPMTPDVVIDET--WFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
KR SS A + E + +V + E+ W + P ++ Y L K EE +
Sbjct: 130 KRFFYASS--ACIYPEFKQLETNVSLKESDAWPAEP------QDAYGLEKLATEELCKHY 181
Query: 180 AKENGIDLVAIHPGTVIGPF 199
K+ GI+ + GPF
Sbjct: 182 TKDFGIECRIGRFHNIYGPF 201
|
Length = 370 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ V GA+G+ +V+ L+ G+ V+A VRDP S + L+ G L + +L +
Sbjct: 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAA-GVE----LVEGDLDDH 55
Query: 71 GSFDSAVDGCDGVF 84
S A+ G D VF
Sbjct: 56 ESLVEALKGVDVVF 69
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 63/261 (24%), Positives = 96/261 (36%), Gaps = 53/261 (20%)
Query: 11 VCVTGASGFVASWLVKLLLQ--RGYTVKATVR---DPNSPKTEHLRELDGATERLHLFKA 65
+ VTGA+G + L + L R V R + PK E++R LD A
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLDRRRPPGSPPKVEYVR-LDIRDPAA----A 55
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
++ E D V H A + D + ++ V GT NVL +CA + RV
Sbjct: 56 DVFRER-------EADAVVHLAFILDPPRDGAERHRIN--VDGTQNVLDACAA-AGVPRV 105
Query: 126 VLTSSI---GAMLLNETPMTPDV---VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
V+TSS+ GA N P+T D E +S E L E +
Sbjct: 106 VVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQ---------LLAEFRRRH 156
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI------FVEIRDV 233
+++ + P T++GP G + P F+ DV
Sbjct: 157 P---ELNVTVLRPATILGP--------GTRNTTRDFLSPRRLPVPGGFDPPFQFLHEDDV 205
Query: 234 VYAHIRALEVPKASGRYLLAG 254
A + A+ A+G + +AG
Sbjct: 206 ARALVLAVR-AGATGIFNVAG 225
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE--HLREL-DGATERLHLF 63
KV +TG +G S+L +LLL++GY V R +S T HL E RLHL
Sbjct: 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLH 60
Query: 64 KANLLEEGSFDSAVDGC--DGVFHTAS----PVIFLSDNPQ--ADIVDPAVMGTLNVL 113
+L + + ++ D +++ A+ V F + P+ AD+ +GTL +L
Sbjct: 61 YGDLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSF--EQPEYTADVD---AIGTLRLL 113
|
Length = 345 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 6e-07
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 43/262 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V +TG G+ L L + G V + D P+ E E + +A++ +
Sbjct: 2 VLITGGGGYFGFRLGCALAKSG--VHVILFDIRRPQQE-------LPEGIKFIQADVRDL 52
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA-VMGTLNVLRSCAKVHSIKRVVLTS 129
+ AV G D VFH AS + + ++++ V GT N+++ C + + R++ TS
Sbjct: 53 SQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVR-RRVPRLIYTS 111
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVL-CKENKEWYSLAKTLAEEAAWKFAKENGIDL- 187
+ + + I S P L + + YS K++AE+ K N + L
Sbjct: 112 TFNVIFGGQP-------IRNGDESLPYLPLDLHVDHYSRTKSIAEQ---LVLKANNMPLP 161
Query: 188 --------VAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY-------IFVEIRD 232
A+ P + GP Q L ++ + G F F Y FV + +
Sbjct: 162 NNGGVLRTCALRPAGIYGPGEQRHL---PRIVSYIEKG--LFMFVYGDPKSLVEFVHVDN 216
Query: 233 VVYAHIRALEVPKASGRYLLAG 254
+V AHI A E + Y+ +G
Sbjct: 217 LVQAHILAAEALTTAKGYIASG 238
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 6e-07
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVK--ATVR--DPNSPKTEHLRELDG--------ATERL 60
+TGA+GF+ L++ LL+ VK VR D S +EL A ER+
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 61 H-----LFKANL-LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLR 114
L + NL L + F + D + H A+ V F+ V+GT VLR
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDL--RATNVLGTREVLR 118
Query: 115 SCAKVHSIKRVVLTSSIGAMLLNE---TPMTPDVVIDETWFSNPVLCKENKEW---YSLA 168
++ S+ A + E +DE + Y+ +
Sbjct: 119 LAKQMKK-LPFHHVST--AYVNGERGGLLEEKPYKLDEDEPALL------GGLPNGYTQS 169
Query: 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIG 197
K LAE+ + A G+ +V P + G
Sbjct: 170 KWLAEQLVREAAG--GLPVVIYRPSIITG 196
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-07
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 49/224 (21%)
Query: 9 KVVCVTGAS---GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL--DGATERLHLF 63
KV VTGAS G + + L + G V R E L + R
Sbjct: 6 KVALVTGASSGIGRA---IARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAV 62
Query: 64 KANL-LEEGSFDSAVD-------GCD------GVFHTASPVIFLSDNPQADIVDPAVMGT 109
A++ +E S ++ V D G+ +P+ L++ ++D ++G
Sbjct: 63 AADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGA 122
Query: 110 LNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK 169
+ R+ + +R+V SS+ + P Y+ +K
Sbjct: 123 FLLTRAALPLMKKQRIVNISSVAGLGGP--PGQA--------------------AYAASK 160
Query: 170 ----TLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
L + A + A GI + A+ PG + P + + E
Sbjct: 161 AALIGLTKALALELAPR-GIRVNAVAPGYIDTPMTAALESAELE 203
|
Length = 251 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 63/285 (22%), Positives = 106/285 (37%), Gaps = 84/285 (29%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLHLFKANLLE 69
V VTG +G++ S V+ LL+ G+ V V D S L +L ++ +LL+
Sbjct: 3 VLVTGGAGYIGSHTVRQLLKTGHEV--VVLDNLSNGHKIALLKLQF-----KFYEGDLLD 55
Query: 70 EGSFDSAVD--GCDGVFHTAS----------PVIFLSDNPQADIVDPAVMGTLNVLRSCA 117
+ + D V H A+ P+ + +N V+GTLN++ +
Sbjct: 56 RALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNN---------VVGTLNLIEAML 106
Query: 118 KVHSIKRVVLTSSIGAMLLNET---PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEE 174
+ +K+ + +S+ A + E P++ + NP Y +K ++EE
Sbjct: 107 Q-TGVKKFIFSST--AAVYGEPTTSPISETSPLAPI---NP---------YGRSKLMSEE 151
Query: 175 AAWKFAKENGIDLVAI--------HPGTVIGPFFQPILN---FGAEVILNL-----INGD 218
AK N +V + P +G + AE L I GD
Sbjct: 152 ILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGD 211
Query: 219 QSFAFP---------YIFVEIRDVVYAHIRALEVPKASGRYLLAG 254
+ YI V+ D+ AH+ AL+ YL G
Sbjct: 212 D---YDTKDGTCIRDYIHVD--DLADAHVLALK-------YLKEG 244
|
Length = 329 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 48/249 (19%), Positives = 81/249 (32%), Gaps = 48/249 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTV----KATVRDPNSPKTEHLRELDGATERLHLFKAN 66
+ + G + F+ LV+ LL G+ V + + EH+ D +R L
Sbjct: 3 ILIIGGTRFIGKALVEELLAAGHDVTVFNRGRTKPDLPEGVEHIV-GD-RNDRDAL--EE 58
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
LL FD VD + V L+ + +K+ +
Sbjct: 59 LLGGEDFDVVVDTI--AYTPRQ-----------------VERALDAFK-----GRVKQYI 94
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW-YSLAKTLAEEAAWKFAKENGI 185
SS L V+ + T P + W Y K AE+ +
Sbjct: 95 FISSASVYLKP-----GRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVL---IEAAAF 146
Query: 186 DLVAIHPGTVIGPF-FQPILNFGAEVILN----LINGDQSFAFPYIFVEIRDVVYAHIRA 240
+ P + GP + L + + + L+ GD F+ ++D+ A + A
Sbjct: 147 PYTIVRPPYIYGPGDYTGRLAYFFDRLARGRPILVPGDGHS--LVQFIHVKDLARALLGA 204
Query: 241 LEVPKASGR 249
PKA G
Sbjct: 205 AGNPKAIGG 213
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 54/215 (25%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V VTG +GF SWL LL+ G V DP + L+ A + F ++
Sbjct: 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPT-SPNLFELLNLAKKIEDHF-GDIR 62
Query: 69 EEGSFDSAVDGC--DGVFHTAS-PVIFLS-DNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
+ A+ + VFH A+ P++ S +P + + VMGT+N+L + + S+K
Sbjct: 63 DAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADP-LETFETNVMGTVNLLEAIRAIGSVKA 121
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW---------------YSLAK 169
VV +S D+ C N EW YS +K
Sbjct: 122 VVNVTS-----------------DK--------CYRNDEWVWGYRETDPLGGHDPYSSSK 156
Query: 170 TLAE--EAAW-----KFAKENGIDLVAIHPGTVIG 197
AE A++ A +GI + + G VIG
Sbjct: 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIG 191
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 37/220 (16%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKAT--VR--DPNSPKT---EHLRELDGATERL-- 60
V +TGA+GF+ ++L++ LL+R K VR D + ++L+E
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 61 ---------HLFKANL-LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTL 110
L K NL L + + + D + H + V ++ P ++ V+GT
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVY--PYEELKPANVLGTK 118
Query: 111 NVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKT 170
+L+ A +K + S++ E D + + N Y +K
Sbjct: 119 ELLKLAAT-GKLKPLHFVSTLSV-FSAEEYNALDDEESDDMLESQNG-LPNG--YIQSKW 173
Query: 171 LAE----EAAWKFAKENGIDLVAIH-PGTVIGPFFQPILN 205
+AE EAA G+ VAI PG + G I N
Sbjct: 174 VAEKLLREAA-----NRGLP-VAIIRPGNIFGDSETGIGN 207
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 41/213 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYT--VKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ VTG G V S +V++L +RGY V T ++ + L + + A
Sbjct: 2 ILVTGHRGLVGSAIVRVLARRGYENVVFRTSKELD------LTDQE-AVRA-------FF 47
Query: 69 EEGSFDSAVDGCDGVFHTASPV--IFLSDNPQAD-IVDPAVMGTLNVLRSCAKVHSIKRV 125
E+ D V H A+ V I + AD + D ++ NV+ + + K V
Sbjct: 48 EKEKP-------DYVIHLAAKVGGIVANMTYPADFLRDNLLIND-NVIHAAHRFGVKKLV 99
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
L SS + + P P IDE+ + E Y++AK + + K+ G
Sbjct: 100 FLGSS--CIYPDLAPQ-P---IDESDLLTGPP-EPTNEGYAIAKRAGLKLCEAYRKQYGC 152
Query: 186 DLVAIHPGTVIGPFFQPILNF---GAEVILNLI 215
D +++ P + GP NF + VI LI
Sbjct: 153 DYISVMPTNLYGPH----DNFDPENSHVIPALI 181
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 44/206 (21%), Positives = 74/206 (35%), Gaps = 45/206 (21%)
Query: 9 KVVCVTGASGFVASWLV-KLLLQ--------------RGYTVKATVRD-PNSPKTEHLRE 52
K V +TGA+GF+ L+ KLL G + + +R+ + R
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 53 LDG-ATERLHLFKANLLEEGSFDSA------VDGCDGVFHTASPVIFLSDNPQADIVDPA 105
L+ ++ + +L E S ++ + + H A+ V F D + +
Sbjct: 61 LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTF--DERLDEALSIN 118
Query: 106 VMGTLNVLRSCAKVHSIKRVVLTSSIGAM------LLNET----PMTPDVVIDETWF--- 152
V+GTL +L + +K V S+ A L+ E P P+ +ID
Sbjct: 119 VLGTLRLLELAKRCKKLKAFVHVST--AYVNGDRQLIEEKVYPPPADPEKLIDILELMDD 176
Query: 153 --SNPVLCKENKEW---YSLAKTLAE 173
K Y+ K LAE
Sbjct: 177 LELERATPKLLGGHPNTYTFTKALAE 202
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-06
Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 42/214 (19%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTVKATVR-----------DPNSPKTEHLRELDGATE 58
V +TGA+GF+ ++L+ +LL + V VR + H EL +
Sbjct: 3 VLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELS--AD 60
Query: 59 RL-----HLFKANL-LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNV 112
R+ L + +L L E ++ + D + H A+ V + P +++ V+GT V
Sbjct: 61 RVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHV--FPYSELRGANVLGTAEV 118
Query: 113 LRSCAKVHSIKRVVLTSSIGAMLLN--------ETPMTPDVVIDETWFSNPVLCKENKEW 164
LR A K + SSI ++P + + K W
Sbjct: 119 LRLAA-TGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSK----W 173
Query: 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGP 198
A+ L EA + G+ + PG + G
Sbjct: 174 V--AEKLVREAG-----DRGLPVTIFRPGYITGD 200
|
Length = 382 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 25/134 (18%)
Query: 18 GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV 77
G++ L + LL +G+ V T R P L + + +
Sbjct: 7 GYLGQRLARQLLAQGWQVTGTTRSPEK-----------LAADRPAGVTPLAADLTQPGLL 55
Query: 78 DGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI------ 131
D + + P P G +L + A++ +++RV+ SS
Sbjct: 56 ADVDHLVISLPP-------PAGSYRGGYDPGLRALLDALAQLPAVQRVIYLSSTGVYGDQ 108
Query: 132 -GAMLLNETPMTPD 144
G + +P P
Sbjct: 109 QGEWVDETSPPNPS 122
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVK------------ATVRDPNSPKTEHLRELDGATE 58
V +TGA+GF+ ++L++ LL+R K A R + ++ L D A E
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWHEDLARE 61
Query: 59 RL-----HLFKANL-LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNV 112
R+ L + L L + ++ + D + H + V ++ P +++ V+GT V
Sbjct: 62 RIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVY--PYSELRGANVLGTREV 119
Query: 113 LRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
LR A K + S+I V D+ + P Y+ +K +A
Sbjct: 120 LRLAAS-GRAKPLHYVSTISV---GAAIDLSTVTEDDATVTPP---PGLAGGYAQSKWVA 172
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIG 197
E + A + G+ + + PG ++G
Sbjct: 173 ELLVRE-ASDRGLPVTIVRPGRILG 196
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 26/145 (17%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHL-RELDGATERLHLFKANL 67
K VTGAS + + L G V + E L EL A + ++
Sbjct: 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE--AAEALAAELRAAGGEARVLVFDV 63
Query: 68 LEEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADI--------VDPAVMGTLNV 112
+E + + ++ D + + A I D + +D + GT NV
Sbjct: 64 SDEAAVRALIEAAVEAFGALDILVNNAG--IT-RDALLPRMSEEDWDRVIDVNLTGTFNV 120
Query: 113 LRSCAKVHSIK----RVVLTSSIGA 133
+R+ IK R+V SS+
Sbjct: 121 VRAALP-PMIKARYGRIVNISSVSG 144
|
Length = 246 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP---NSPKTEHL-RELDGATER 59
G+ KV +TG +G S+L + LL +GY V +R N+ + +H+ + R
Sbjct: 2 GDPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKAR 61
Query: 60 LHLFKANLLEEGSFDSAVDGC--DGVFHTA--SPVIFLSDNPQ--ADIVDPAVMGTLNVL 113
+ L +L + S +D D V++ A S V + P AD+V + L +
Sbjct: 62 MKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAV 121
Query: 114 RSCAK 118
R +
Sbjct: 122 RLHGQ 126
|
Length = 340 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 46/219 (21%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
VTGAS + + + L + G V R+ L ++ +A++ +E
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEE--ALAELAAIEALGGNAVAVQADVSDE 58
Query: 71 GSFDSAVD-------GCDGVFHTA--SPVIFLSDNPQADI---VDPAVMGTLNVLRSCAK 118
++ V+ D + + A + L + D +D + G + R+
Sbjct: 59 EDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLTRAALP 118
Query: 119 VHSIK----RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK----T 170
H K R+V SS+ P + Y+ +K
Sbjct: 119 -HMKKQGGGRIVNISSVAG-----------------LRPLP-----GQAAYAASKAALEG 155
Query: 171 LAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
L A + A GI + A+ PG V P + AE
Sbjct: 156 LTRSLALELAPY-GIRVNAVAPGLVDTPMLAKLGPEEAE 193
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 32/153 (20%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLE 69
V VTG +G++ S V LL+ GY V V D S H L R+ ++ ++ +
Sbjct: 2 VLVTGGAGYIGSHTVVELLEAGYDV--VVLDNLS--NGHREALPRIEKIRIEFYEGDIRD 57
Query: 70 EGSFDSAVD--GCDGVFHTAS----------PVIFLSDNPQADIVDPAVMGTLNVLRSCA 117
+ D D V H A+ P+ + +N V+GTLN+L +
Sbjct: 58 RAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNN---------VVGTLNLLEAMR 108
Query: 118 KVHSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150
H +K V +SS A + E P I E
Sbjct: 109 A-HGVKNFVFSSS--AAVYGEPETVP---ITEE 135
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDPNSPKTEHLRELDGATERLH---- 61
E+ V VTGA+G V S V +L + GY V A T + + + ++L+EL GA+E +
Sbjct: 145 EDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKEL-GASEVIDREDL 200
Query: 62 LFKANLLEEGSFDSAVD 78
LE+ + AVD
Sbjct: 201 SPPGKPLEKERWAGAVD 217
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 72/322 (22%), Positives = 106/322 (32%), Gaps = 54/322 (16%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
V +TGASGFV L + LL + + D SPK R+ +L
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAP------SGAPRVTQIAGDLAV 55
Query: 70 EGSFDSAVDG-CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
++ +G D VFH A+ V ++ V GT N+L + K R V T
Sbjct: 56 PALIEALANGRPDVVFHLAAIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPRFVFT 115
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SS+ L P+ V D T +P Y K + E +++ +D
Sbjct: 116 SSLAVYGLP----LPNPVTDHTAL-DPASS------YGAQKAMCELLLNDYSRRGFVDGR 164
Query: 189 AIH-PGTVIGP---------FFQPILNF---GAEVILNLINGDQSFAFPYIFVEIRDVVY 235
+ P + P F I+ G E L +Q Y + V
Sbjct: 165 TLRLPTVCVRPGRPNKAASAFASTIIREPLVGEEAGLP--VAEQL---RYWLKSVATAVA 219
Query: 236 AHIRALEVP----KASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL-EEKYQPTIKVS 290
+ A E+P L G + L+ L L + L + IK
Sbjct: 220 NFVHAAELPAEKFGPRRDLTLPGLSVTVGEELRALIP--VAGLPALMLITFEPDEEIKRI 277
Query: 291 QE---------RAKSLGINFTP 303
RA+SLG F
Sbjct: 278 VFGWPTRFDATRAQSLG--FVA 297
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD--PNSPKT--EHLRELDGA-TE 58
+ + VTG +G++ S V LL GY V V D NS + ++EL G +
Sbjct: 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKV--VVIDNLDNSSEEALRRVKELAGDLGD 58
Query: 59 RLHLFKANLLEEGSFDSAVDGC--DGVFH----------TASPVIFLSDNPQADIVDPAV 106
L K +L ++ + + D V H A P+++ +N +
Sbjct: 59 NLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNN---------L 109
Query: 107 MGTLNVLRSCAKVHSIKRVVLTSS 130
+GT+N+L AK H K++V +SS
Sbjct: 110 VGTINLLEVMAK-HGCKKLVFSSS 132
|
Length = 352 |
| >gnl|CDD|215072 PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V V GA+G +V+ LL +G+ VKA VRD + KT ++ L + +A++
Sbjct: 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQD-----PSLQIVRADVT 72
Query: 69 EEGS---FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVM---GTLNVLRSCAKVHSI 122
EGS ++ D D V + D P + GT+N++ +C K +
Sbjct: 73 -EGSDKLVEAIGDDSDAV------ICATGFRRSFDPFAPWKVDNFGTVNLVEACRKA-GV 124
Query: 123 KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE 182
R +L SSI L+N M NP N +L L E K+ ++
Sbjct: 125 TRFILVSSI---LVNGAAMGQ--------ILNPAYIFLNLFGLTLVAKLQAE---KYIRK 170
Query: 183 NGIDLVAIHPG 193
+GI+ + PG
Sbjct: 171 SGINYTIVRPG 181
|
Length = 251 |
| >gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-----KTEHLRELDGAT 57
S E ++ V V GA+G++ ++V+ L++RGY V A R+ + K + +EL GA
Sbjct: 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAE 114
|
Length = 390 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 51/319 (15%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLL 68
+C+ GA GF+ S L + L+ K D + K +HL E D + R+ + N+
Sbjct: 17 ICMIGAGGFIGSHLCEKLMTETPH-KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIK 75
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQA-DIVDPAVMGTLNVLRSCAK-----VHSI 122
+ + + D + A+ N + D + + L V++ C++ +H
Sbjct: 76 HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFS 135
Query: 123 KRVVLTSSIGAMLLNETPMTPD---VVIDETWFSNPVLCK--ENKEW-YSLAKTLAEEAA 176
V +IG+ L + P+ D V+ E +P + E + W Y+ AK L E
Sbjct: 136 TCEVYGKTIGSFLPKDHPLRQDPAFYVLKED--ESPCIFGSIEKQRWSYACAKQLIERLI 193
Query: 177 WKFAKENGIDLVAIHPGTVIGPF--FQPILNFGAEVI----------------LNLINGD 218
+ ENG++ + P IGP F P ++ +E + L L++G
Sbjct: 194 YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGG 253
Query: 219 QSFAFPYIFVEIRDVVYAHIRALEVP-KASGRYLLAG------SVAQHSDILKFLREHYP 271
QS FV I+D + A + +E P +A+G G +V Q ++++ E Y
Sbjct: 254 QS---QRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMT---EVYA 307
Query: 272 TLLRSGKLEEKYQPTIKVS 290
+ LEE PT+ VS
Sbjct: 308 KVSGEPALEE---PTVDVS 323
|
Length = 386 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 60/273 (21%), Positives = 102/273 (37%), Gaps = 55/273 (20%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +G++ S V+ LL+ G+ V + + ++ E L + T + + +L +
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEV-VILDNLSNGSREALPRGERITP-VTFVEGDLRDR 59
Query: 71 GSFDSAVDG--CDGVFH-TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
D + D V H + S V+GTLN+L + + +K+ +
Sbjct: 60 ELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQ-AGVKKFIF 118
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEE---------AAWK 178
+SS A + E P I E P+ Y +K ++E+ W
Sbjct: 119 SSS--AAVYGEPSSIP---ISEDSPLGPI------NPYGRSKLMSEQILRDLQKADPDWS 167
Query: 179 FAKENGIDLVAIHPGTVIGPFFQPILN---FGAEVILNL-----INGDQSFAFP------ 224
+ ++ HP IG I + + +V + I G +P
Sbjct: 168 YVILRYFNVAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTD---YPTPDGTC 224
Query: 225 ---YIFVEIRDVVYAHIRALEVPKASGRYLLAG 254
YI V D+ AH+ ALE YLL G
Sbjct: 225 VRDYIHVM--DLADAHLAALE-------YLLNG 248
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHLRELDGATERLHLFKA 65
++K V VTGA+ + V+ LL G V A VRDP S HL G ++ +
Sbjct: 2 KDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGS--AAHLVAKYGD--KVVPLRL 57
Query: 66 NLLEEGSFDSAVDGCD---------GVFHTASPVIFLSDNPQAD--IVDPAVMGTLNVLR 114
++ + S +A GV A+ +A +D V G L + +
Sbjct: 58 DVTDPESIKAAAAQAKDVDVVINNAGVLKPATL--LEEGALEALKQEMDVNVFGLLRLAQ 115
Query: 115 SCAKVHSIKR-----VVLTSSIGAM 134
+ A V +K +V +S+ ++
Sbjct: 116 AFAPV--LKANGGGAIVNLNSVASL 138
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 56/215 (26%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATER 59
MM +G KVV VTGA+ + V+ LL RG V A RDP S + R
Sbjct: 1 MMDIKG--KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES--------VTDLGPR 50
Query: 60 LHLFKANLLEEGSFDSAVDGCD---------GVFHTASPVIFLSDNPQADI---VDPAVM 107
+ + ++ + S +A + G+F T S L + + + ++
Sbjct: 51 VVPLQLDVTDPASVAAAAEAASDVTILVNNAGIFRTGSL---LLEGDEDALRAEMETNYF 107
Query: 108 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167
G L + R+ A VL ++ G ++N V+ +W + P L YS
Sbjct: 108 GPLAMARAFAP-------VLAANGGGAIVN-------VLSVLSWVNFPNLGT-----YSA 148
Query: 168 AKTLAEEAAWKFA-------KENGIDLVAIHPGTV 195
+K AAW G ++ +HPG +
Sbjct: 149 SKA----AAWSLTQALRAELAPQGTRVLGVHPGPI 179
|
Length = 238 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 60/286 (20%), Positives = 105/286 (36%), Gaps = 58/286 (20%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLR-ELDGATERLHLFKANL 67
K+V +TG +GF+ L + L G+ V R P + DG +
Sbjct: 1 KIV-ITGGTGFIGRALTRRLTAAGHEVVVLSRRPGKAEGLAEVITWDGLSLG-------- 51
Query: 68 LEEGSFDSAVDGCDGVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
+ G D V + A I ++ + +I+ + T ++ + A + +
Sbjct: 52 ------PWELPGADAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAPPK 105
Query: 125 V-VLTSSIGAMLLNET-PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE 182
V + S++G + +T + + + + +C K W E+AA A E
Sbjct: 106 VLISASAVGYYGHSGDEVLTENSPSGKDFLAE--VC---KAW--------EKAAQP-ASE 151
Query: 183 NGIDLVAIHPGTVIG----------PFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232
G +V + G V+G F+ L G L +G Q +I I D
Sbjct: 152 LGTRVVILRTGVVLGPDGGALPKMLLPFR--LGLGGP----LGSGRQ--WMSWI--HIDD 201
Query: 233 VVYAHIRALEVPKASGRY-LLAGSVAQHSDILKFLRE--HYPTLLR 275
+V A+E P SG +A + +++ K L H P L
Sbjct: 202 LVRLIEFAIENPDLSGPVNAVAPNPVTNAEFTKALGRALHRPAGLP 247
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
V GASG + + + L +RG+ V+ R + L G + A+ ++ S
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSGSKLA-----WLPGVE----IVAADAMDASS 54
Query: 73 FDSAVDGCDGVFHTASP 89
+A G D ++H A+P
Sbjct: 55 VIAAARGADVIYHCANP 71
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 49/258 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V +TG +G + S L++ LL+RG+ V + + + + EHL + L + + ++ ++
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQV-VVIDNFATGRREHLPDHPN----LTVVEGSIADK 57
Query: 71 GSFDSAVDGC--DGVFHTASPVIFLSDNPQADIVDPA--VMGTLNVLRSCAKVHSIKRVV 126
D D V HTA+ +P D V+G NV+++ AK +KR++
Sbjct: 58 ALVDKLFGDFKPDAVVHTAAAY----KDPDDWYEDTLTNVVGGANVVQA-AKKAGVKRLI 112
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+ A+ PM + +D + Y+++KT E + + +G+D
Sbjct: 113 YFQT--ALCYGLKPMQQPIRLDHPRAP----PGSS---YAISKTAGEY----YLELSGVD 159
Query: 187 LVAIHPGTVIGP---------FFQPILNFGAEVILNLINGDQSFAFPYI--FVEIRDVVY 235
V V GP F+Q L G + F FV ++D+
Sbjct: 160 FVTFRLANVTGPRNVIGPLPTFYQ-----------RLKAGKKCFVTDTRRDFVFVKDLAR 208
Query: 236 AHIRALEVPKASGRYLLA 253
+AL+ + G Y +
Sbjct: 209 VVDKALDGIRGHGAYHFS 226
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 4e-04
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDPNSPKTEHLRELDGATE---R 59
G+G V VTGA+G V S V LL + GY V A T R + ++LR L GA+E R
Sbjct: 146 GDGP---VLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEA---DYLRSL-GASEIIDR 198
Query: 60 LHLF-KANLLEEGSFDSAVDGCDG 82
L L++ + AVD G
Sbjct: 199 AELSEPGRPLQKERWAGAVDTVGG 222
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLH 61
V +TG +GF+ S L + L++G+ V + N + RE G +
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFG-NLAWLKANREDGG----VR 55
Query: 62 LFKANLLEEGSFDSAVDGCDGVFHTASPVIFLS--DNPQADIVDPAVMGTLNVLRSCAKV 119
++ + + D + HTA+ + +P+ D A+ GTLNVL + +
Sbjct: 56 FVHGDIRNRNDLEDLFEDIDLIIHTAAQPSVTTSASSPRLDFETNAL-GTLNVLEAARQH 114
Query: 120 HSIKRVVLTSSI 131
+ TS+
Sbjct: 115 APNAPFIFTSTN 126
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK---A 65
KV VTGAS + + + L + GY V +R+P E L L + +
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNP-----EDLAALSASGGDVEAVPYDAR 55
Query: 66 NLLEEGSFDSAV----DGCDGVFHTA 87
+ + + A+ D + H A
Sbjct: 56 DPEDARALVDALRDRFGRIDVLVHNA 81
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 9 KVVCVTGA-SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
K V +TG SGF + L K L G+TV A N P + LR + ++RL + ++
Sbjct: 1 KAVLITGCDSGF-GNLLAKKLDSLGFTVLAGCLTKNGPGAKELRRV--CSDRLRTLQLDV 57
Query: 68 LEEGSFDSAV 77
+ A
Sbjct: 58 TKPEQIKRAA 67
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDG--ATERLHLFKA 65
K + VTG +G + S LV+ +L+ G + RD N E +REL ++L
Sbjct: 3 KTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENK-LHELVRELRSRFPHDKLRFIIG 61
Query: 66 NL--LEEGSFDSAVDGCDGVFHTAS--PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
++ E G D VFH A+ V + DNP+ + V+GT NV+ + + +
Sbjct: 62 DVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEE-AIKTNVLGTKNVIDAAIE-NG 119
Query: 122 IKRVVLTSS 130
+++ V S+
Sbjct: 120 VEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 57/211 (27%)
Query: 13 VTGAS---GFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+TGAS G LV+ LL RG TV AT RDP++ L L + RLH+ + ++
Sbjct: 3 ITGASRGIGLE---LVRQLLARGNNTVIATCRDPSA--ATELAALGASHSRLHILELDVT 57
Query: 69 EEGSFDSA--------VDGCDGVFHTASPVIFLSDNPQADIVDPA---------VMGTLN 111
+E + +SA G D + + A L A VD V+G L
Sbjct: 58 DEIA-ESAEAVAERLGDAGLDVLINNAG---ILHSYGPASEVDSEDLLEVFQVNVLGPLL 113
Query: 112 VLRSCA---KVHSIKRVVLTSS-IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167
+ ++ + +++ SS +G++ N W+S Y
Sbjct: 114 LTQAFLPLLLKGARAKIINISSRVGSIGDNT---------SGGWYS-----------YRA 153
Query: 168 AKTLAEEAAWKFAKEN---GIDLVAIHPGTV 195
+K A E GI +V++HPG V
Sbjct: 154 SKAALNMLTKSLAVELKRDGITVVSLHPGWV 184
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 30/188 (15%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ + GASG S ++K L+RG+ V A VR+ + A + + + + ++ +
Sbjct: 3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLA---------ARQGVTILQKDIFDL 53
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
S S + G D V SDN D ++ L K + R+++
Sbjct: 54 TSLASDLAGHDAVISAFGA--GASDN------DELHSKSIEALIEALKGAGVPRLLVVGG 105
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
G++ ++E ++D F E+ A AE E +D +
Sbjct: 106 AGSLEIDEGTR----LVDTPDFP--------AEYKPEALAQAEFLD-SLRAEKSLDWTFV 152
Query: 191 HPGTVIGP 198
P P
Sbjct: 153 SPAAFFEP 160
|
Length = 211 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 13 VTGASGFVASWLVKLLLQ--RGYTVKATVRDPNSPKTEHLRELDGATERLH 61
VTG +GF+ LV LL R TV VR + + E L GA +R+
Sbjct: 5 VTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGA-DRVV 54
|
Length = 657 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 60/266 (22%), Positives = 98/266 (36%), Gaps = 77/266 (28%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK------TEHLRELDGATERLHLFKAN 66
VTG +GF+ S V+ LL + K D K E+L ++ + R K +
Sbjct: 5 VTGGAGFIGSNFVRYLLNKYPDYKIINLD----KLTYAGNLENLEDVSSS-PRYRFVKGD 59
Query: 67 LLEEGSFDSAV--DGCDGVFHTA----------SPVIFLSDNPQADIVDPAVMGTLNVLR 114
+ + D + D V H A P F+ N V+GT +L
Sbjct: 60 ICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTN---------VLGTYTLLE 110
Query: 115 SCAKVHSIKRVVLTS------SIGAMLLN--ETPMTPDVVIDETWFSNPVLCKENKEWYS 166
A+ + +KR V S + +P+ P ++P YS
Sbjct: 111 -AARKYGVKRFVHISTDEVYGDLLDDGEFTETSPLAP---------TSP---------YS 151
Query: 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP---ILNFGAEVILNLINGDQSFAF 223
+K A+ + + G+ +V GP+ P I F ILN ++G
Sbjct: 152 ASKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFPEKLIPLF----ILNALDG-----K 202
Query: 224 PY-IF---VEIRDVVYA--HIRALEV 243
P I+ + +RD +Y H RA+E+
Sbjct: 203 PLPIYGDGLNVRDWLYVEDHARAIEL 228
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 55/260 (21%), Positives = 93/260 (35%), Gaps = 65/260 (25%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
+ +TG +GF+ L + L +RG+ V R P T+ A E
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTILTRSPPPGANTKWEGYKPWAGE----------- 49
Query: 70 EGSFDSAVDGCDGVFHTASPVIFL---SDNPQADIVDPAVMGT---LNVLRSCAKVHSIK 123
+++G D V + A I ++ + +I D + T + + + + K
Sbjct: 50 ---DADSLEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAAEQK--PK 104
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDET-------WFSNPVLCKENKEWYSLAKTLAEEAA 176
+ S++G + D E + + LC ++W EEAA
Sbjct: 105 VFISASAVGYY-----GPSEDREYTEEDSPAGDDFLAE--LC---RDW--------EEAA 146
Query: 177 WKFAKENGIDLVAIHPGTVIGP---FFQPILNF-----GAEVILNLINGDQSFAFPYIFV 228
G +V + G V+GP +L G L +G Q F +I +
Sbjct: 147 QAAEDL-GTRVVLLRTGIVLGPKGGALAKMLLPFRLGLGGP----LGSGRQ--WFSWIHI 199
Query: 229 EIRDVVYAHIRALEVPKASG 248
E D+V + ALE SG
Sbjct: 200 E--DLVQLILFALENASVSG 217
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
E+ V VTGA+G V S V +L + GY V A+ + ++L++L GA E +
Sbjct: 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG--KADAADYLKKL-GAKEVIP 197
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.004
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GFV S LV L+ RG V + + + + E+L L G R L + +++E
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEV-IVIDNFFTGRKENLVHLFG-NPRFELIRHDVVEP 180
Query: 71 GSFDSAVDGCDGVFHTASPV--IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ D ++H A P + NP + VMGTLN+L +V + R +LT
Sbjct: 181 ILLE-----VDQIYHLACPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRVGA--RFLLT 232
Query: 129 SS 130
S+
Sbjct: 233 ST 234
|
Length = 436 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.96 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.95 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.95 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.95 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.94 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.94 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.94 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.94 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.94 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.94 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.94 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.94 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.94 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.93 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.93 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.93 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.93 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.93 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.93 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.93 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.93 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.93 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.92 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.92 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.92 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.92 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.92 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.92 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.92 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.92 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.92 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.92 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.92 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.92 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.92 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.92 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.92 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.91 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.91 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.91 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.91 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.91 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.91 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.91 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.91 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.91 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.91 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.91 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.91 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.9 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.9 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.9 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.9 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.9 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.9 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.9 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.9 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.9 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.9 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.9 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.9 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.89 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.89 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.89 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.89 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.89 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.89 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.89 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.89 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.89 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.89 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.88 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.88 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.88 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.88 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.87 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.87 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.87 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.86 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.86 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.86 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.85 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.84 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.84 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.84 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.84 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.83 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.83 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.83 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.82 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.82 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.82 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.81 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.81 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.81 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.81 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.8 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.8 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.8 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.79 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.79 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.79 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.76 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.76 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.75 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.74 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.72 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.71 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.69 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.68 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.68 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.68 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.67 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.66 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.63 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.63 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.62 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.59 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.56 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.51 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.48 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.48 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.47 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.35 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.33 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.16 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.15 | |
| PLN00106 | 323 | malate dehydrogenase | 99.12 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.11 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 99.02 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.01 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.88 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.84 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.81 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.75 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.68 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.62 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.51 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.49 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.44 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.39 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.37 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.37 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.34 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.32 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.3 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.22 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.22 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.2 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.15 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 98.11 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 98.06 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.03 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.01 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.97 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.97 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.95 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.91 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 97.85 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.84 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.78 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.76 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.76 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.76 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.74 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.7 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.69 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.69 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.67 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.64 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.61 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.61 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.59 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.58 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.58 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.56 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.54 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.54 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.52 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.52 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.51 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.47 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.46 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.44 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.44 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.44 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.44 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.43 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.42 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.41 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.38 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.38 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.33 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.29 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.28 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.24 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.18 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.17 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.14 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.1 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.09 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.09 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.07 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.06 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.03 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.02 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.0 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.98 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.92 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 96.92 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.9 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.89 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.87 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.82 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.81 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.79 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.79 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.78 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.77 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.76 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.76 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 96.74 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.74 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.68 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.67 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.65 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.64 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.61 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.6 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.6 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.59 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.59 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.58 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.58 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.55 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.51 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.5 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.49 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.48 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.46 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.44 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.42 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.42 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.4 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.39 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.37 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.35 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.33 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.33 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.32 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 96.29 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.28 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.24 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.23 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.22 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.21 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.19 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.19 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.18 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.16 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.14 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.13 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.13 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.12 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 96.12 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.1 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.1 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.07 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.06 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.05 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.05 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.03 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.03 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.03 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.03 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.02 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.02 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.01 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.01 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.99 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.98 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.97 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.94 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.93 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.92 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.92 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.85 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.84 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.83 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.8 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.8 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 95.79 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.78 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 95.78 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 95.77 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.76 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.76 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.76 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 95.76 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.75 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.75 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 95.74 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.73 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.72 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.7 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.7 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 95.68 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 95.68 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.66 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.62 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.61 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.61 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.57 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 95.56 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.56 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.54 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.52 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 95.52 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 95.47 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.44 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 95.44 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.44 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 95.43 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.42 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.38 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.36 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.35 |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=363.44 Aligned_cols=316 Identities=54% Similarity=0.879 Sum_probs=276.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+++|+||||+||||++|+++|+++||.|.+++|++++... +++..+.....+...+.+|++|++++++++++||+|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 56899999999999999999999999999999999987544 46777777777899999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
.|.++.....++..+..+..+.||+|++++|++...++|||++||.+++.........+..++|+.+.++.+......+|
T Consensus 85 ~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y 164 (327)
T KOG1502|consen 85 TASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWY 164 (327)
T ss_pred eCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHHH
Confidence 99988664444545899999999999999999985599999999998887664444557799999999998877767889
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
..||..+|+.+++++++.+++++++.|+.|+||...+..+.......+.+.|. ..++ ....|||++|+|++++.+++.
T Consensus 165 ~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~ 244 (327)
T KOG1502|consen 165 ALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEK 244 (327)
T ss_pred HHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999998886555566777888886 6666 666699999999999999999
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHHHHhhC-CcccchhhhHHHHHHHHHHcC
Q 020747 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQERAKSLG-INFTPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 244 ~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~lg-~~~~~~~~~l~~~~~~~~~~~ 319 (322)
+...|+|+|+++..++.|+++++.+.+|..++|.... ........++++|++.|| |++++++|.+.+++++++.++
T Consensus 245 ~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 245 PSAKGRYICVGEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFRPLEETLSDTVESLREKG 324 (327)
T ss_pred cccCceEEEecCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHhcccceecChHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888776554 233344578999998877 778999999999999999988
Q ss_pred CCC
Q 020747 320 FLS 322 (322)
Q Consensus 320 ~~~ 322 (322)
+++
T Consensus 325 ~l~ 327 (327)
T KOG1502|consen 325 LLL 327 (327)
T ss_pred CCC
Confidence 764
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=354.54 Aligned_cols=310 Identities=44% Similarity=0.785 Sum_probs=243.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|+|+||||+||||++|+++|+++||+|++++|+.+......+..+.....+++++.+|++|+++++++++++|+|||+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 46899999999999999999999999999999997653222222222221246889999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
|+... ..+...+++|+.|+.+++++|++. ++++||++||..++|+.... .+..+++|+++.....+..+.++|+
T Consensus 89 A~~~~----~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~-~~~~~~~E~~~~~~~~~~~p~~~Y~ 162 (342)
T PLN02214 89 ASPVT----DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNR-DPEAVVDESCWSDLDFCKNTKNWYC 162 (342)
T ss_pred cCCCC----CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCC-CCCcccCcccCCChhhccccccHHH
Confidence 99752 345688999999999999999997 88999999997678764321 1124688886543332223346799
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcCC
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
.||.++|++++.+++++|++++++||++||||...+........+...+.|. ..++ +.++|||++|+|++++.+++++
T Consensus 163 ~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~ 242 (342)
T PLN02214 163 YGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAP 242 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCc
Confidence 9999999999999988999999999999999986543222222233455565 4344 7889999999999999999987
Q ss_pred CCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHHHHhhCCcccchhhhHHHHHHHHHHcCCC
Q 020747 245 KASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQERAKSLGINFTPWEVGVRGCIESLMEKGFL 321 (322)
Q Consensus 245 ~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~~ 321 (322)
..+|.||+++...+++|+++.+++.++..++|.... ........+|++|+++|||+|++++|+|+++++|+++.+++
T Consensus 243 ~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LG~~p~~lee~i~~~~~~~~~~~~~ 322 (342)
T PLN02214 243 SASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFTSTKQSLYDTVKSLQEKGHL 322 (342)
T ss_pred ccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHHcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 666789888778999999999999997555444322 23444567899999779999999999999999999998876
Q ss_pred C
Q 020747 322 S 322 (322)
Q Consensus 322 ~ 322 (322)
+
T Consensus 323 ~ 323 (342)
T PLN02214 323 A 323 (342)
T ss_pred C
Confidence 4
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=349.51 Aligned_cols=316 Identities=67% Similarity=1.065 Sum_probs=246.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++|+|||||||||||++|+++|+++|++|++++|+...... ..+.......++++++.+|++|++.++.+++++|+||
T Consensus 2 ~~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 2 GEGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 356899999999999999999999999999999987654221 1111111113468999999999999999999999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhh-ccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAM-LLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~-~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+|+........+...++++|+.++.+++++|++..++++||++||..++ |+.... .+..+++|+.+..|.+.....+
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~-~~~~~~~E~~~~~p~~~~~~~~ 160 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPL-TPDVVVDETWFSDPAFCEESKL 160 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCC-CCCCcCCcccCCChhHhhcccc
Confidence 99997643323332378899999999999999886478899999998543 543211 1144688888776643333335
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-CCCcceeHHHHHHHHHHhhc
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
+|+.+|..+|++++.++++++++++++||+++|||...+........+.+++.|.+.++ +.++|+|++|+|++++.+++
T Consensus 161 ~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 240 (322)
T PLN02662 161 WYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFE 240 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhc
Confidence 79999999999999999889999999999999999865433333445566666655556 88999999999999999999
Q ss_pred CCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc--cCCCCccccchHHHHhhCCcccchhhhHHHHHHHHHHcCC
Q 020747 243 VPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSLGINFTPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 243 ~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~ 320 (322)
++...|.|++++..++++|+++.+.+..+..++|.... ..+.....+|++|++.|||++++++++|+++++|++.+++
T Consensus 241 ~~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~ 320 (322)
T PLN02662 241 IPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSLGIEFIPLEVSLKDTVESLKEKGF 320 (322)
T ss_pred CcCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHHhCCccccHHHHHHHHHHHHHHcCC
Confidence 87666788888889999999999999987554444322 2344567899999966999998999999999999999987
Q ss_pred CC
Q 020747 321 LS 322 (322)
Q Consensus 321 ~~ 322 (322)
++
T Consensus 321 ~~ 322 (322)
T PLN02662 321 LS 322 (322)
T ss_pred CC
Confidence 64
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=348.04 Aligned_cols=314 Identities=54% Similarity=0.923 Sum_probs=243.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+|+|||||||||||++++++|+++||+|+++.|+...... ..+........+++++.+|++|++.++++++++|+|||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 46899999999999999999999999999999987654321 11111111134689999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhh-ccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAM-LLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~-~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
+|+.......++..+.++.|+.|+.+++++|++..++++||++||..++ ++... ...+.+++|+++..|..+..+.+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~-~~~~~~~~E~~~~~p~~~~~~~~~ 162 (322)
T PLN02986 84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPP-IEANDVVDETFFSDPSLCRETKNW 162 (322)
T ss_pred eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCcc-CCCCCCcCcccCCChHHhhccccc
Confidence 9997543333343467899999999999999885468999999998554 33221 112456888887665433333367
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-CCCcceeHHHHHHHHHHhhcC
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
|+.||.++|.+++.++++++++++++||+++|||...+........+..+..|.+.++ +.++|||++|+|++++.++++
T Consensus 163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~ 242 (322)
T PLN02986 163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALET 242 (322)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcC
Confidence 9999999999999999989999999999999999865543333455666666665455 778999999999999999998
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCccCCC--CccccchHHHHhhCCcccchhhhHHHHHHHHHHcCCC
Q 020747 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQ--PTIKVSQERAKSLGINFTPWEVGVRGCIESLMEKGFL 321 (322)
Q Consensus 244 ~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~lg~~~~~~~~~l~~~~~~~~~~~~~ 321 (322)
+..+|.|+++++.++++|+++++++.+|...++........ ....+|++|++.|||+|++++|+|+++++|++..+++
T Consensus 243 ~~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lg~~~~~l~e~~~~~~~~~~~~~~~ 322 (322)
T PLN02986 243 PSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEMICKVCVEKVKNLGVEFTPMKSSLRDTILSLKEKCLL 322 (322)
T ss_pred cccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccccccCCccCHHHHHHcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 76667898888889999999999999986554433111111 2234899999779999988999999999999998764
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=331.90 Aligned_cols=292 Identities=22% Similarity=0.256 Sum_probs=238.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+||||||+||||||.|.+|++.||+|++++.-..... +.+... ..+++++|+.|.+.++++|+ .+|.|||+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~-~~v~~~-----~~~f~~gDi~D~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHK-IALLKL-----QFKFYEGDLLDRALLTAVFEENKIDAVVHF 74 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCH-HHhhhc-----cCceEEeccccHHHHHHHHHhcCCCEEEEC
Confidence 47999999999999999999999999999987543322 222211 15899999999999999998 68999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... .+-..|.++++.|+.||++|+++|++. ++++|||.||+ ++||.+. ..|++|+++..|. ++|
T Consensus 75 Aa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSStA-avYG~p~----~~PI~E~~~~~p~------NPY 142 (329)
T COG1087 75 AASISVGESVQNPLKYYDNNVVGTLNLIEAMLQT-GVKKFIFSSTA-AVYGEPT----TSPISETSPLAPI------NPY 142 (329)
T ss_pred ccccccchhhhCHHHHHhhchHhHHHHHHHHHHh-CCCEEEEecch-hhcCCCC----CcccCCCCCCCCC------Ccc
Confidence 997543 233445899999999999999999999 89999999998 8888886 7899999999987 889
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC-------CccHHHHHHHHcCC----CCCC---------CCC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL-------NFGAEVILNLINGD----QSFA---------FPY 225 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~-------~~~~~~~~~~~~g~----~~~~---------~~~ 225 (322)
|.||.+.|++++.+++.++++.+++|.+++.|....... ......+.+...|+ .+|+ ..|
T Consensus 143 G~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iR 222 (329)
T COG1087 143 GRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIR 222 (329)
T ss_pred hhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeee
Confidence 999999999999999999999999999999997543221 11122333444444 2332 789
Q ss_pred cceeHHHHHHHHHHhhcCCCCCc---cEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHHH-Hhh
Q 020747 226 IFVEIRDVVYAHIRALEVPKASG---RYLLA-GSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQERA-KSL 297 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g---~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k~-~~l 297 (322)
|||||.|+|++++.+++.-..+| +||++ |..+|++|+++.+++..| .++|.... ..+...+..|++|+ +.|
T Consensus 223 DYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg-~~ip~~~~~RR~GDpa~l~Ad~~kA~~~L 301 (329)
T COG1087 223 DYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTG-RDIPVEIAPRRAGDPAILVADSSKARQIL 301 (329)
T ss_pred eeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhC-CcCceeeCCCCCCCCceeEeCHHHHHHHh
Confidence 99999999999999987533233 67776 889999999999999998 66665444 56777899999999 889
Q ss_pred CCcc-c-chhhhHHHHHHHHH-HcC
Q 020747 298 GINF-T-PWEVGVRGCIESLM-EKG 319 (322)
Q Consensus 298 g~~~-~-~~~~~l~~~~~~~~-~~~ 319 (322)
||+| + ++++.++..+.|.. .++
T Consensus 302 gw~p~~~~L~~ii~~aw~W~~~~~~ 326 (329)
T COG1087 302 GWQPTYDDLEDIIKDAWDWHQQRHG 326 (329)
T ss_pred CCCcccCCHHHHHHHHHHHhhhhcC
Confidence 9999 7 89999999999998 443
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=323.85 Aligned_cols=300 Identities=18% Similarity=0.214 Sum_probs=249.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
|++|||||+||||++++++++++. .+|+.++.-.-....+.+..+. ..++..++++|++|.+.+..+++ .+|+|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~-~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vv 79 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE-DSPRYRFVQGDICDRELVDRLFKEYQPDAVV 79 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh-cCCCceEEeccccCHHHHHHHHHhcCCCeEE
Confidence 479999999999999999999986 4577776643332223333333 24689999999999999999998 589999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+||-++. .+-..+..+.++|+.||.+|++++++....-||+|+||. .|||.-... ...++|++|.+|. |
T Consensus 80 hfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTD-EVYG~l~~~--~~~FtE~tp~~Ps------S 150 (340)
T COG1088 80 HFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTD-EVYGDLGLD--DDAFTETTPYNPS------S 150 (340)
T ss_pred EechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccc-cccccccCC--CCCcccCCCCCCC------C
Confidence 99998765 445566889999999999999999998322499999999 888876521 2369999999998 8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHI 238 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~ 238 (322)
||++||++++.++++|...+|++++|.|+++-|||.+.+. +.++.++.+++.|. ++++ +.|||+||+|-++|+.
T Consensus 151 PYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpE-KlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~ 229 (340)
T COG1088 151 PYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE-KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAID 229 (340)
T ss_pred CcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCch-hhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHH
Confidence 8999999999999999999999999999999999998875 66788889999998 6666 9999999999999999
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCC-----CCC--ccCCCCccccchHHH-HhhCCcc-cchhhhH
Q 020747 239 RALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRS-----GKL--EEKYQPTIKVSQERA-KSLGINF-TPWEVGV 308 (322)
Q Consensus 239 ~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~-----~~~--~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l 308 (322)
.++++++.+.+||++ +...+..|+++.|++.++...-. ... .+.-...+-+|.+|+ ++|||+| .+|++||
T Consensus 230 ~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~Gl 309 (340)
T COG1088 230 LVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETGL 309 (340)
T ss_pred HHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHHHH
Confidence 999999887799877 56789999999999999753211 111 133456788999999 9999999 9999999
Q ss_pred HHHHHHHHHcC
Q 020747 309 RGCIESLMEKG 319 (322)
Q Consensus 309 ~~~~~~~~~~~ 319 (322)
+++++||.++.
T Consensus 310 rkTv~WY~~N~ 320 (340)
T COG1088 310 RKTVDWYLDNE 320 (340)
T ss_pred HHHHHHHHhch
Confidence 99999998753
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=349.90 Aligned_cols=300 Identities=17% Similarity=0.160 Sum_probs=234.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc----C-CCCcEEEEEccCCCccchHHhhCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD----G-ATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
+++|+|||||||||||++|+++|+++|++|++++|...... ..+.... . ...++.++.+|++|.+++.++++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQ-HNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcch-hhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 56789999999999999999999999999999998653221 1111110 0 0135889999999999999999999
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+|+.... ....++...+++|+.||.+++++|++. ++++|||+||. ++|+... +.+..|+++..|.
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~-~vyg~~~----~~~~~e~~~~~p~--- 162 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVSSFTYAASS-STYGDHP----DLPKIEERIGRPL--- 162 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeech-HhhCCCC----CCCCCCCCCCCCC---
Confidence 999999997543 223345678999999999999999998 89999999998 6776543 4566777766665
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCC--CCCC---CCCcceeHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGD--QSFA---FPYIFVEIR 231 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~--~~~~---~~~~~i~~~ 231 (322)
++|+.+|.++|.++..+.++++++++++||+++|||.+.+.. ...+.++.+++.|. .+++ +.++|+|++
T Consensus 163 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~ 239 (348)
T PRK15181 163 ---SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIE 239 (348)
T ss_pred ---ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHH
Confidence 679999999999999998888999999999999999865432 23456666777776 3333 689999999
Q ss_pred HHHHHHHHhhcCCC---CCccEEEe-cCCCCHHHHHHHHHHhCCCCCC------CC--CCccCCCCccccchHHH-HhhC
Q 020747 232 DVVYAHIRALEVPK---ASGRYLLA-GSVAQHSDILKFLREHYPTLLR------SG--KLEEKYQPTIKVSQERA-KSLG 298 (322)
Q Consensus 232 D~a~~~~~~~~~~~---~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~------~~--~~~~~~~~~~~~~~~k~-~~lg 298 (322)
|+|++++.++..+. .+++||++ ++++|++|+++.+.+.++.... +. ...........+|++|+ +.||
T Consensus 240 D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 319 (348)
T PRK15181 240 NVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLS 319 (348)
T ss_pred HHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhC
Confidence 99999998776432 34589876 6899999999999998863211 10 01123344677999999 7799
Q ss_pred Ccc-cchhhhHHHHHHHHHHc
Q 020747 299 INF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 299 ~~~-~~~~~~l~~~~~~~~~~ 318 (322)
|+| ++++|+|+++++|++.+
T Consensus 320 w~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 320 YEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999 89999999999999865
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=339.76 Aligned_cols=312 Identities=54% Similarity=0.919 Sum_probs=242.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+|+||||||+||||++++++|+++|++|++++|+...... ..+........+++++.+|++|+++++++++++|+|||+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~ 84 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHT 84 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEe
Confidence 5899999999999999999999999999998887654321 111111111246889999999999999999999999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... ...+++...+++|+.++.+++++|.+.+++++||++||..++++.........+++|+++..|.....+.++|
T Consensus 85 A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y 164 (325)
T PLN02989 85 ASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQWY 164 (325)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccch
Confidence 996533 2234456789999999999999998864578999999985665432111114578999888775333333679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-CCCcceeHHHHHHHHHHhhcCC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
+.||.++|+++..++++++++++++||+++|||...+........+.++..|+.++. +.++|+|++|+|++++.+++++
T Consensus 165 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~~~l~~~ 244 (325)
T PLN02989 165 VLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHVKALETP 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHHHHhcCc
Confidence 999999999999999888999999999999999876543334455666666664444 6689999999999999999886
Q ss_pred CCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHHHHhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 245 KASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 245 ~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
..+|.||++++.+|++|+++.+++.+|...++.... .........|++|++.|||.| ++++++|+++++|++..+
T Consensus 245 ~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~p~~~l~~gi~~~~~~~~~~~ 323 (325)
T PLN02989 245 SANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEFTPTETSLRDTVLSLKEKC 323 (325)
T ss_pred ccCceEEEecCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHHcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 656789888889999999999999997543322111 112235678899996699999 999999999999998765
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=335.42 Aligned_cols=309 Identities=42% Similarity=0.718 Sum_probs=230.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.|+|||||||||||++|+++|+++|++|++++|+.+.... ..+........+++++.+|++|++.++++++++|+|||+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~ 84 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHV 84 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEe
Confidence 4799999999999999999999999999999987644321 011111111236889999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCcc-ccCCCCCCcc---cccccc
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVV-IDETWFSNPV---LCKENK 162 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~-~~E~~~~~~~---~~~~~~ 162 (322)
|+.......++....+++|+.|+.+++++|++...+++|||+||..++++... ..+ ++|+.+.... ....+.
T Consensus 85 A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~----~~~~~~E~~~~~~~~~~~~~~~~ 160 (351)
T PLN02650 85 ATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEH----QKPVYDEDCWSDLDFCRRKKMTG 160 (351)
T ss_pred CCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCC----CCCccCcccCCchhhhhcccccc
Confidence 98754332334357899999999999999998733789999999855554322 222 5666432111 011122
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHH--HHHcCC-CCCC--CCCcceeHHHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVIL--NLINGD-QSFA--FPYIFVEIRDVVYAH 237 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~--~~~~g~-~~~~--~~~~~i~~~D~a~~~ 237 (322)
++|+.||.++|.+++.+++++|++++++||+++|||........ .++. ....+. ..+. +.++|+|++|+|+++
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~ 238 (351)
T PLN02650 161 WMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPP--SLITALSLITGNEAHYSIIKQGQFVHLDDLCNAH 238 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCc--cHHHHHHHhcCCccccCcCCCcceeeHHHHHHHH
Confidence 57999999999999999999999999999999999986543221 1121 123343 2232 568999999999999
Q ss_pred HHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc--cCCCCccccchHHHHhhCCcc-cchhhhHHHHHHH
Q 020747 238 IRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIES 314 (322)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~ 314 (322)
+.+++++..+|.|++++..++++|+++.|.+..+...++.... ........+|++|+++|||+| ++++++|+++++|
T Consensus 239 ~~~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~egl~~~i~~ 318 (351)
T PLN02650 239 IFLFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDLGFTFKYSLEDMFDGAIET 318 (351)
T ss_pred HHHhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCCCCCCCcCcccccccCChHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999886666788888888999999999999887544443221 223345567888888899999 8999999999999
Q ss_pred HHHcCCCC
Q 020747 315 LMEKGFLS 322 (322)
Q Consensus 315 ~~~~~~~~ 322 (322)
++.++.++
T Consensus 319 ~~~~~~~~ 326 (351)
T PLN02650 319 CREKGLIP 326 (351)
T ss_pred HHHcCCCC
Confidence 99877653
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=331.62 Aligned_cols=314 Identities=37% Similarity=0.588 Sum_probs=230.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++|+||||||+||||++|+++|+++|++|++++|+...... ..+..+. ..++++++.+|++|++++.++++++|+||
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQ-ELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcC-CCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 446899999999999999999999999999999887643211 1111111 11358899999999999999999999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc---cccc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL---CKEN 161 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~---~~~~ 161 (322)
|+|+........+...++++|+.++.++++++.+..++++||++||. ++|+.........+++|+.+..... ...+
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~-~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p 164 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSA-AAVSINKLSGTGLVMNEKNWTDVEFLTSEKPP 164 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecc-eeeeccCCCCCCceeccccCCchhhhhhcCCc
Confidence 99997533323333457799999999999999886458899999998 4444321100133556653211000 0112
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC--------CCCcceeHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA--------FPYIFVEIR 231 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~--------~~~~~i~~~ 231 (322)
.++|+.||.++|.+++.+++.++++++++||++||||+.....+.....+.+++.+.. +.+ +.++|+|++
T Consensus 165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~ 244 (338)
T PLN00198 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVE 244 (338)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcceeEHH
Confidence 3679999999999999999989999999999999999865433322223334444441 111 247999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc-cCCCCccccchHHHHhhCCcc-cchhhhHH
Q 020747 232 DVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE-EKYQPTIKVSQERAKSLGINF-TPWEVGVR 309 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~ 309 (322)
|+|++++.+++.+...+.|++++...+++|+++.+.+..+...++.... ........+|++|++.+||+| ++++|+|+
T Consensus 245 D~a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~G~~p~~~l~~gi~ 324 (338)
T PLN00198 245 DVCRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFGDFPSKAKLIISSEKLISEGFSFEYGIEEIYD 324 (338)
T ss_pred HHHHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCCCccccccCCCCccccChHHHHhCCceecCcHHHHHH
Confidence 9999999999886556678888888999999999999886443332211 122345678999995579999 99999999
Q ss_pred HHHHHHHHcCCC
Q 020747 310 GCIESLMEKGFL 321 (322)
Q Consensus 310 ~~~~~~~~~~~~ 321 (322)
++++|++.++++
T Consensus 325 ~~~~~~~~~~~~ 336 (338)
T PLN00198 325 QTVEYFKAKGLL 336 (338)
T ss_pred HHHHHHHHcCCC
Confidence 999999988765
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=319.33 Aligned_cols=314 Identities=42% Similarity=0.654 Sum_probs=226.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+||||||+||||++++++|+++|++|++++|+..... .....+.. ..+++++.+|++|+++++++++++|+|||
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL-HLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 34689999999999999999999999999999988653321 11111111 35688999999999999999999999999
Q ss_pred cccCcccC---CCCCcch-----hhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCC-CCCccccCCCCCCcc
Q 020747 86 TASPVIFL---SDNPQAD-----IVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPM-TPDVVIDETWFSNPV 156 (322)
Q Consensus 86 ~A~~~~~~---~~~~~~~-----~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~-~~~~~~~E~~~~~~~ 156 (322)
+|+..... ...++.. .++.|+.++.+++++|++..++++||++||. ++|+..... ....+++|+.+....
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~-~vyg~~~~~~~~~~~~~E~~~~p~~ 164 (353)
T PLN02896 86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSI-STLTAKDSNGRWRAVVDETCQTPID 164 (353)
T ss_pred CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEech-hhccccccCCCCCCccCcccCCcHH
Confidence 99975432 1223333 4455679999999999887457899999998 555532210 012457776322111
Q ss_pred ---cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---------C
Q 020747 157 ---LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---------F 223 (322)
Q Consensus 157 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---------~ 223 (322)
....+.++|+.||.++|+++..+++.++++++++||++||||...+..+.....+.....|. ..++ .
T Consensus 165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 244 (353)
T PLN02896 165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMG 244 (353)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccC
Confidence 00112246999999999999999998999999999999999986544332222222233444 2221 2
Q ss_pred CCcceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCC--ccCCCCccccchHHHHhhCCcc
Q 020747 224 PYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLGINF 301 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~lg~~~ 301 (322)
.++|||++|+|++++.+++.+..++.|++++..++++|+++++++.++........ ......+..+|++|++.|||+|
T Consensus 245 ~~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGw~p 324 (353)
T PLN02896 245 SIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIPSEISSKKLRDLGFEY 324 (353)
T ss_pred ceeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCCCCccccccccccCccccccCHHHHHHcCCCc
Confidence 46999999999999999987655668888888999999999999988633211111 1111123456888887799999
Q ss_pred -cchhhhHHHHHHHHHHcCCCC
Q 020747 302 -TPWEVGVRGCIESLMEKGFLS 322 (322)
Q Consensus 302 -~~~~~~l~~~~~~~~~~~~~~ 322 (322)
++++++|+++++|++..+.++
T Consensus 325 ~~~l~~~i~~~~~~~~~~~~~~ 346 (353)
T PLN02896 325 KYGIEEIIDQTIDCCVDHGFLP 346 (353)
T ss_pred cCCHHHHHHHHHHHHHHCCCCC
Confidence 899999999999999887764
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=321.56 Aligned_cols=301 Identities=20% Similarity=0.160 Sum_probs=231.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~v 83 (322)
+++|+||||||+||||+++++.|+++|++|++++|+...... ....+. ...++.++.+|++|.+++.+++++ +|+|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPN-LFELLN-LAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchh-HHHHHh-hcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 467899999999999999999999999999999987654321 111111 123577899999999999999885 6999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+||.... ....++...+++|+.++.++++++++..++++||++||. .+|+.... ..+++|+++..|.
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~-~vyg~~~~---~~~~~e~~~~~p~------ 149 (349)
T TIGR02622 80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSD-KCYRNDEW---VWGYRETDPLGGH------ 149 (349)
T ss_pred EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEech-hhhCCCCC---CCCCccCCCCCCC------
Confidence 999996432 233456788999999999999999886227899999998 66654321 3467787776655
Q ss_pred hhHHHHHHHHHHHHHHHHHHc-------CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---CCCcceeHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKEN-------GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---FPYIFVEIR 231 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~~~i~~~ 231 (322)
++|+.||.++|.+++.+++++ +++++++||+++|||++.......+.++..+..|. ..++ +.++|+|++
T Consensus 150 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v~ 229 (349)
T TIGR02622 150 DPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHVL 229 (349)
T ss_pred CcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeHH
Confidence 679999999999999988764 89999999999999975332233456667777776 2232 899999999
Q ss_pred HHHHHHHHhhcCC-----CCCccEEEec---CCCCHHHHHHHHHHhCCCCC--CCCC---CccCCCCccccchHHH-Hhh
Q 020747 232 DVVYAHIRALEVP-----KASGRYLLAG---SVAQHSDILKFLREHYPTLL--RSGK---LEEKYQPTIKVSQERA-KSL 297 (322)
Q Consensus 232 D~a~~~~~~~~~~-----~~~g~~~~~~---~~~~~~e~~~~i~~~~~~~~--~~~~---~~~~~~~~~~~~~~k~-~~l 297 (322)
|+|++++.+++.. ..++.||+++ ..++..|+++.+.+..+..+ +... ..........+|++|+ ++|
T Consensus 230 D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 309 (349)
T TIGR02622 230 EPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLL 309 (349)
T ss_pred HHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHh
Confidence 9999999887641 2246898873 58999999999988765322 1111 1133445678899999 779
Q ss_pred CCcc-cchhhhHHHHHHHHHHc
Q 020747 298 GINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 298 g~~~-~~~~~~l~~~~~~~~~~ 318 (322)
||+| ++++++|+++++|++..
T Consensus 310 gw~p~~~l~~gi~~~i~w~~~~ 331 (349)
T TIGR02622 310 GWHPRWGLEEAVSRTVDWYKAW 331 (349)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
Confidence 9999 99999999999999864
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=324.75 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=221.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+.|+|||||||||||++|+++|+++ |++|++++|+.... ..+.... ....+++++.+|++|.+.++++++++|+|
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~--~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKI--KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhh--hhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 4579999999999999999999998 59999999865332 1111110 11246899999999999999999999999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc------
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV------ 156 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~------ 156 (322)
||+|+.... ....++.+.+..|+.++.+++++|++. + ++|||+||. .+|+... ..+++|+.+..+.
T Consensus 91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~-~vYg~~~----~~~~~e~~p~~~~~~~~~~ 163 (386)
T PLN02427 91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTC-EVYGKTI----GSFLPKDHPLRQDPAFYVL 163 (386)
T ss_pred EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeee-eeeCCCc----CCCCCcccccccccccccc
Confidence 999997543 222334566788999999999999886 6 899999998 6776542 2233343332110
Q ss_pred ----------cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC---------CC-ccHHHHHHHHc
Q 020747 157 ----------LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI---------LN-FGAEVILNLIN 216 (322)
Q Consensus 157 ----------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~---------~~-~~~~~~~~~~~ 216 (322)
....+.+.|+.+|.++|+++..+++.++++++++||++||||..... .+ ....++..+..
T Consensus 164 ~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 243 (386)
T PLN02427 164 KEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLR 243 (386)
T ss_pred cccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhc
Confidence 00112256999999999999999888899999999999999975311 01 12233445556
Q ss_pred CCC--CCC---CCCcceeHHHHHHHHHHhhcCCC-C-CccEEEec--CCCCHHHHHHHHHHhCCCCC-CCC---C---Cc
Q 020747 217 GDQ--SFA---FPYIFVEIRDVVYAHIRALEVPK-A-SGRYLLAG--SVAQHSDILKFLREHYPTLL-RSG---K---LE 280 (322)
Q Consensus 217 g~~--~~~---~~~~~i~~~D~a~~~~~~~~~~~-~-~g~~~~~~--~~~~~~e~~~~i~~~~~~~~-~~~---~---~~ 280 (322)
+.+ +++ +.++|+|++|+|++++.+++++. . ++.||+++ +.++++|+++.+.+.++... .+. . ..
T Consensus 244 ~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~ 323 (386)
T PLN02427 244 REPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVS 323 (386)
T ss_pred CCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccC
Confidence 653 333 67899999999999999998753 3 34888875 48999999999999887421 010 0 00
Q ss_pred --------cCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 281 --------EKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 281 --------~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
..+......|.+|+ ++|||+| ++++++|+++++|++.
T Consensus 324 ~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~ 370 (386)
T PLN02427 324 SKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHK 370 (386)
T ss_pred cccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHH
Confidence 11334567799999 7799999 9999999999999864
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=319.91 Aligned_cols=299 Identities=17% Similarity=0.227 Sum_probs=227.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-hhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih 85 (322)
|+|||||||||||++++++|+++|++|+++.++..+.. ...+.... ...++.++.+|++|++++++++++ +|+|||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-QSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcc-cCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 68999999999999999999999988655443322211 11111111 123578899999999999999984 899999
Q ss_pred cccCcccC-CCCCcchhhhHHHHHHHHHHHHHhhc--------CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 86 TASPVIFL-SDNPQADIVDPAVMGTLNVLRSCAKV--------HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 86 ~A~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~--------~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
+||..... ....+...+++|+.|+.+++++|.+. .++++||++||. ++|+.... ...+++|+.+..|.
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~--~~~~~~E~~~~~p~ 157 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTD-EVYGDLHS--TDDFFTETTPYAPS 157 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecch-hhcCCCCC--CCCCcCCCCCCCCC
Confidence 99975432 23345789999999999999999863 256799999998 66664321 14468888776665
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIR 231 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~ 231 (322)
+.|+.||.++|.+++.++++++++++++||+++|||...+. .....++.++..+. ++++ +.++|+|++
T Consensus 158 ------s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 230 (355)
T PRK10217 158 ------SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE-KLIPLMILNALAGKPLPVYGNGQQIRDWLYVE 230 (355)
T ss_pred ------ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcc-cHHHHHHHHHhcCCCceEeCCCCeeeCcCcHH
Confidence 67999999999999999988999999999999999986432 23445566666665 3333 789999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC--CCCC-------C-----ccCCCCccccchHHH-H
Q 020747 232 DVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL--RSGK-------L-----EEKYQPTIKVSQERA-K 295 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~--~~~~-------~-----~~~~~~~~~~~~~k~-~ 295 (322)
|+|++++.+++.+..++.||++ ++.+|++|+++.+++.++... .|.. . .+.....+.+|++|+ +
T Consensus 231 D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 310 (355)
T PRK10217 231 DHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIAR 310 (355)
T ss_pred HHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHH
Confidence 9999999999876556689877 678999999999999875311 1110 0 012234568899999 8
Q ss_pred hhCCcc-cchhhhHHHHHHHHHHc
Q 020747 296 SLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 296 ~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+|||+| ++++|+|+++++|++.+
T Consensus 311 ~lg~~p~~~l~e~l~~~~~~~~~~ 334 (355)
T PRK10217 311 ELGWLPQETFESGMRKTVQWYLAN 334 (355)
T ss_pred hcCCCCcCcHHHHHHHHHHHHHhC
Confidence 899999 99999999999999865
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=316.82 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=226.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-----CCCcEEEEEccCCCccchHHhhCC--CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATERLHLFKANLLEEGSFDSAVDG--CD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~--~d 81 (322)
|+|||||||||||++|+++|+++|++|++++|+.+....+.+..+.. ...+++++.+|++|.+.+.+++++ +|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999998764321111111110 124588999999999999999984 69
Q ss_pred EEEEcccCcccC-CCCCcchhhhHHHHHHHHHHHHHhhcCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 82 GVFHTASPVIFL-SDNPQADIVDPAVMGTLNVLRSCAKVHSI---KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 82 ~vih~A~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
+|||+|+..... ....+...+++|+.|+.+++++|++. ++ ++|||+||. ++||... ..+++|+.+..|.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~-~vyg~~~----~~~~~E~~~~~p~- 153 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTS-ELYGKVQ----EIPQNETTPFYPR- 153 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccH-HhhCCCC----CCCCCCCCCCCCC-
Confidence 999999975432 22334567788999999999999986 54 389999999 6776543 4568888877665
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC--CccHHHHHHHHcCC-C-C-CC---CCCccee
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL--NFGAEVILNLINGD-Q-S-FA---FPYIFVE 229 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~--~~~~~~~~~~~~g~-~-~-~~---~~~~~i~ 229 (322)
++|+.||.++|.+++.++++++++++..|+.++|||...... .....++.++..|. . . ++ +.++|+|
T Consensus 154 -----~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~ 228 (343)
T TIGR01472 154 -----SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGH 228 (343)
T ss_pred -----ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCcee
Confidence 779999999999999999889999999999999999743221 12233445555565 2 2 23 7899999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-C-------------------CCC---CccCCCC
Q 020747 230 IRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-R-------------------SGK---LEEKYQP 285 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~-------------------~~~---~~~~~~~ 285 (322)
++|+|++++.+++++. .+.||++ ++++|++|+++.+.+.++... + +.. ....+..
T Consensus 229 V~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T TIGR01472 229 AKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVD 307 (343)
T ss_pred HHHHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccc
Confidence 9999999999998754 4678766 789999999999999887321 0 000 0122234
Q ss_pred ccccchHHH-HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 286 TIKVSQERA-KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 286 ~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
...+|++|+ ++|||+| ++++|+|+++++++++
T Consensus 308 ~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 308 LLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred hhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 456799999 8899999 9999999999999874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=327.10 Aligned_cols=310 Identities=16% Similarity=0.133 Sum_probs=223.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh---------------hhhhhcc-CCCCcEEEEEccCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT---------------EHLRELD-GATERLHLFKANLLE 69 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~~~~-~~~~~~~~~~~Dl~~ 69 (322)
.++|+||||||+||||++|+++|+++|++|++++|....... +.+.... ....+++++.+|++|
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d 124 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICD 124 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCC
Confidence 467899999999999999999999999999998753221100 0000000 012358899999999
Q ss_pred ccchHHhhC--CCCEEEEcccCcccC-CC---CCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhccCCCCCC
Q 020747 70 EGSFDSAVD--GCDGVFHTASPVIFL-SD---NPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 70 ~~~~~~~~~--~~d~vih~A~~~~~~-~~---~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~~~~~~~~ 142 (322)
++.++++++ ++|+|||+|+..... .. .++...+++|+.|+.+++++|++. +++ +||++||. ++||......
T Consensus 125 ~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~-gv~~~~V~~SS~-~vYG~~~~~~ 202 (442)
T PLN02572 125 FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF-APDCHLVKLGTM-GEYGTPNIDI 202 (442)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh-CCCccEEEEecc-eecCCCCCCC
Confidence 999999988 589999999764321 11 123456789999999999999997 775 89999999 6776532100
Q ss_pred CCcccc------CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC------------
Q 020747 143 PDVVID------ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL------------ 204 (322)
Q Consensus 143 ~~~~~~------E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~------------ 204 (322)
.+.+++ |+++..+ ..+.++|+.||.++|.+++.+++.+|++++++||++||||++....
T Consensus 203 ~E~~i~~~~~~~e~~~~~~---~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~ 279 (442)
T PLN02572 203 EEGYITITHNGRTDTLPYP---KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD 279 (442)
T ss_pred cccccccccccccccccCC---CCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence 011222 2221111 1223679999999999999999999999999999999999864310
Q ss_pred ----CccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHHHHhhcCCCCCc---cEEEecCCCCHHHHHHHHHHh---
Q 020747 205 ----NFGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAHIRALEVPKASG---RYLLAGSVAQHSDILKFLREH--- 269 (322)
Q Consensus 205 ----~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~~~~~~~~~~~g---~~~~~~~~~~~~e~~~~i~~~--- 269 (322)
.....++.++..|.+ +++ +.|+|+|++|+|++++.+++++...| +||++++.+|++|+++.+++.
T Consensus 280 ~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~ 359 (442)
T PLN02572 280 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEK 359 (442)
T ss_pred cchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHh
Confidence 122344556666763 343 78999999999999999998653333 577777889999999999998
Q ss_pred CCCC-C---CCCCCccCCCCccccchHHHHhhCCcc-c---chhhhHHHHHHHHHHcCC
Q 020747 270 YPTL-L---RSGKLEEKYQPTIKVSQERAKSLGINF-T---PWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 270 ~~~~-~---~~~~~~~~~~~~~~~~~~k~~~lg~~~-~---~~~~~l~~~~~~~~~~~~ 320 (322)
.+.. . .|.............|++|+++|||+| + ++.+++.+++.||+++.+
T Consensus 360 ~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 360 LGLDVEVISVPNPRVEAEEHYYNAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred hCCCCCeeeCCCCcccccccccCccHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 6532 1 121112233346678999996699999 7 899999999999987643
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=322.89 Aligned_cols=295 Identities=20% Similarity=0.223 Sum_probs=223.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
.|+|||||||||||++|+++|+++|++|++++|...... ........ ..+++++.+|+.+.. +.++|+|||+|
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~-~~~~~~~~-~~~~~~~~~Di~~~~-----~~~~D~ViHlA 192 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRK-ENLVHLFG-NPRFELIRHDVVEPI-----LLEVDQIYHLA 192 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccH-hHhhhhcc-CCceEEEECcccccc-----ccCCCEEEECc
Confidence 579999999999999999999999999999998643211 11111111 246788899987653 46799999999
Q ss_pred cCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 88 SPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
+.... ....++...+++|+.|+.+++++|++. ++ +||++||. .+|+... ..+++|+......+ ..+.+.|+
T Consensus 193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g~-r~V~~SS~-~VYg~~~----~~p~~E~~~~~~~p-~~p~s~Yg 264 (436)
T PLN02166 193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-RFLLTSTS-EVYGDPL----EHPQKETYWGNVNP-IGERSCYD 264 (436)
T ss_pred eeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECcH-HHhCCCC----CCCCCccccccCCC-CCCCCchH
Confidence 97543 223455788999999999999999997 65 89999998 6776543 45677764211100 01125699
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC-CccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHHHHh
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL-NFGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~~~~ 240 (322)
.+|.++|++++.+++.++++++++||+++|||...... .....++.+++++.+ +++ +.++|+|++|+++++..+
T Consensus 265 ~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~ 344 (436)
T PLN02166 265 EGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVAL 344 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHH
Confidence 99999999999999888999999999999999864322 234566777777773 333 689999999999999999
Q ss_pred hcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCC-CCccCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHH
Q 020747 241 LEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-RSG-KLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESL 315 (322)
Q Consensus 241 ~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~ 315 (322)
++.+ ..|+||++ ++.+|++|+++.|++..+... +.. ...........+|++|+ +.|||+| ++++++|+++++|+
T Consensus 345 ~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~ 423 (436)
T PLN02166 345 MEGE-HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMVSDF 423 (436)
T ss_pred HhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9764 45688776 688999999999999986321 111 11122335567899999 7799999 99999999999999
Q ss_pred HHc
Q 020747 316 MEK 318 (322)
Q Consensus 316 ~~~ 318 (322)
+.+
T Consensus 424 ~~~ 426 (436)
T PLN02166 424 RNR 426 (436)
T ss_pred HHH
Confidence 864
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=315.31 Aligned_cols=296 Identities=18% Similarity=0.146 Sum_probs=223.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+.|+|+|||||||||++|+++|+++||+|++++|....... .. ....+++.+|++|.+.+.++++++|+|||+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~----~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 92 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS----ED---MFCHEFHLVDLRVMENCLKVTKGVDHVFNL 92 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc----cc---cccceEEECCCCCHHHHHHHHhCCCEEEEc
Confidence 46899999999999999999999999999999986532110 00 112577889999998888888999999999
Q ss_pred ccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC--CCCcccccccc
Q 020747 87 ASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW--FSNPVLCKENK 162 (322)
Q Consensus 87 A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~--~~~~~~~~~~~ 162 (322)
|+.... .....+...++.|+.++.+++++|++. ++++|||+||. .+|+.........+++|+. +..|.
T Consensus 93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~-~vYg~~~~~~~~~~~~E~~~~p~~p~------ 164 (370)
T PLN02695 93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSA-CIYPEFKQLETNVSLKESDAWPAEPQ------ 164 (370)
T ss_pred ccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCch-hhcCCccccCcCCCcCcccCCCCCCC------
Confidence 986532 112233556789999999999999987 89999999998 6776543211122466654 34443
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCC---CCCC---CCCcceeHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGD---QSFA---FPYIFVEIRDV 233 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~---~~~~---~~~~~i~~~D~ 233 (322)
+.|+.+|.++|+++..+++.+|++++++||+++|||...... .....++.+++.+. .+++ +.++|+|++|+
T Consensus 165 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~ 244 (370)
T PLN02695 165 DAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDEC 244 (370)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHH
Confidence 679999999999999998888999999999999999754221 12334555555543 2333 78999999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC-CCCCCCccCCCCccccchHHH-HhhCCcc-cchhhhHH
Q 020747 234 VYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL-LRSGKLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVR 309 (322)
Q Consensus 234 a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~ 309 (322)
+++++.+++++ .++.||++ ++.+|++|+++.+.+..+.. ++.............+|++|+ ++|||+| ++++++|+
T Consensus 245 a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~sk~~~~lgw~p~~~l~e~i~ 323 (370)
T PLN02695 245 VEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLR 323 (370)
T ss_pred HHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCCCccccccCHHHHHHhcCCCCCCCHHHHHH
Confidence 99999988765 35678776 68899999999999887642 111110111223456899999 7899999 89999999
Q ss_pred HHHHHHHHc
Q 020747 310 GCIESLMEK 318 (322)
Q Consensus 310 ~~~~~~~~~ 318 (322)
++++|++.+
T Consensus 324 ~~~~~~~~~ 332 (370)
T PLN02695 324 ITYFWIKEQ 332 (370)
T ss_pred HHHHHHHHH
Confidence 999999863
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=315.53 Aligned_cols=298 Identities=16% Similarity=0.211 Sum_probs=223.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC-CccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL-EEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~vih~ 86 (322)
|+|||||||||||++|+++|+++ |++|++++|+.... ..+.. ..+++++.+|++ +.+.+.++++++|+|||+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~-----~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRL-----GDLVN-HPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHH-----HHhcc-CCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 58999999999999999999987 69999999864321 11111 245899999998 667788889999999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc-ccccccchh
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP-VLCKENKEW 164 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~-~~~~~~~~~ 164 (322)
|+.... ....++...+++|+.++++++++|++. + ++|||+||. .+|+... ..+++|+.++.. .+...+.+.
T Consensus 76 aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~-~vyg~~~----~~~~~ee~~~~~~~~~~~p~~~ 148 (347)
T PRK11908 76 VAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTS-EVYGMCP----DEEFDPEASPLVYGPINKPRWI 148 (347)
T ss_pred cccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecc-eeeccCC----CcCcCccccccccCcCCCccch
Confidence 997543 234455788999999999999999987 6 799999999 6676543 345666653211 111122367
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-------CCccHHHHHHHHcCCC--CCC---CCCcceeHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-------LNFGAEVILNLINGDQ--SFA---FPYIFVEIRD 232 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D 232 (322)
|+.+|.++|++++.++..++++++++||+++|||+..+. ......++.++..|.+ ++. +.++|+|++|
T Consensus 149 Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D 228 (347)
T PRK11908 149 YACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDD 228 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHH
Confidence 999999999999999988999999999999999985431 1123455666666663 332 7899999999
Q ss_pred HHHHHHHhhcCCC---CCccEEEec--CCCCHHHHHHHHHHhCCCCC-C-------CCCC-c--------cCCCCccccc
Q 020747 233 VVYAHIRALEVPK---ASGRYLLAG--SVAQHSDILKFLREHYPTLL-R-------SGKL-E--------EKYQPTIKVS 290 (322)
Q Consensus 233 ~a~~~~~~~~~~~---~~g~~~~~~--~~~~~~e~~~~i~~~~~~~~-~-------~~~~-~--------~~~~~~~~~~ 290 (322)
++++++.+++++. .++.||+++ ..+|++|+++.|.+.++..+ + .... . .........|
T Consensus 229 ~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 308 (347)
T PRK11908 229 GIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPK 308 (347)
T ss_pred HHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccCC
Confidence 9999999998753 245898875 36999999999998876321 1 0000 0 0112345568
Q ss_pred hHHH-HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 291 QERA-KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 291 ~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
++|+ +.|||+| ++++++++++++|+++..
T Consensus 309 ~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~ 339 (347)
T PRK11908 309 IDNTMQELGWAPKTTMDDALRRIFEAYRGHV 339 (347)
T ss_pred hHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 8999 8899999 999999999999998643
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=319.25 Aligned_cols=297 Identities=19% Similarity=0.198 Sum_probs=222.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|+|||||||||||++|+++|+++|++|++++|...... +...... ...+++++.+|+.++ ++.++|+|||+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~-~~~~~~~-~~~~~~~i~~D~~~~-----~l~~~D~ViHl 190 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRK-ENVMHHF-SNPNFELIRHDVVEP-----ILLEVDQIYHL 190 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccch-hhhhhhc-cCCceEEEECCccCh-----hhcCCCEEEEe
Confidence 5689999999999999999999999999999987532211 1111111 124678889998775 34679999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
|+.... ....++.+.+++|+.++.+++++|++. ++ +||++||. .+|+... ..+.+|+.+....+ ..+.+.|
T Consensus 191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~-~VYg~~~----~~p~~E~~~~~~~P-~~~~s~Y 262 (442)
T PLN02206 191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTS-EVYGDPL----QHPQVETYWGNVNP-IGVRSCY 262 (442)
T ss_pred eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECCh-HHhCCCC----CCCCCccccccCCC-CCccchH
Confidence 997543 223456789999999999999999997 65 89999999 6666543 44666764221110 1112679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-CCccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHHHH
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-LNFGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~~~ 239 (322)
+.+|.++|+++..+++.++++++++||+++|||..... ......++.+++.+.+ +++ +.++|+|++|+|++++.
T Consensus 263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~ 342 (442)
T PLN02206 263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 342 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHH
Confidence 99999999999999888899999999999999975422 1234456667777663 333 68899999999999999
Q ss_pred hhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC-CCCC-CCccCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHH
Q 020747 240 ALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL-LRSG-KLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIES 314 (322)
Q Consensus 240 ~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~ 314 (322)
++++. ..|.||++ ++.+|++|+++.+++..+.. .+.. .....+.....+|++|+ ++|||+| ++++|+|+++++|
T Consensus 343 a~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~ 421 (442)
T PLN02206 343 LMEGE-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKD 421 (442)
T ss_pred HHhcC-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99865 45688776 68899999999999988532 1111 11122345567899999 8899999 9999999999999
Q ss_pred HHHcC
Q 020747 315 LMEKG 319 (322)
Q Consensus 315 ~~~~~ 319 (322)
++...
T Consensus 422 ~~~~~ 426 (442)
T PLN02206 422 FRQRV 426 (442)
T ss_pred HHHhh
Confidence 98654
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=308.63 Aligned_cols=299 Identities=19% Similarity=0.145 Sum_probs=229.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc----CCCCcEEEEEccCCCccchHHhhCC-
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD----GATERLHLFKANLLEEGSFDSAVDG- 79 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~- 79 (322)
+.++|+||||||+||||++|+++|+++|++|++++|+.+......+..+. ....++.++.+|++|.+.++++++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 35678999999999999999999999999999999876432111222111 1124588999999999999988874
Q ss_pred -CCEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-----EEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 -CDGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-----RVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 -~d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-----~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|+|||+||.... .....+...+++|+.|+.+++++|++. +++ +||++||. ++|+... .+++|+.+
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~-~vyg~~~-----~~~~E~~~ 155 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSS-EMYGSTP-----PPQSETTP 155 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccH-HHhCCCC-----CCCCCCCC
Confidence 6999999997543 223345677899999999999999987 554 89999998 6777542 37888887
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC-C-ccHHHHHHHHcCC--CCC-C---CC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL-N-FGAEVILNLINGD--QSF-A---FP 224 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~-~-~~~~~~~~~~~g~--~~~-~---~~ 224 (322)
..|. +.|+.||.++|.+++.++++++++++..|+.++|||...... . ....++.++..+. .++ + +.
T Consensus 156 ~~p~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 229 (340)
T PLN02653 156 FHPR------SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDAS 229 (340)
T ss_pred CCCC------ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcce
Confidence 7765 679999999999999999999999999999999999754321 1 1122334444555 233 3 78
Q ss_pred CcceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC---C--CCCC-CccCCCCccccchHHH-Hh
Q 020747 225 YIFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL---L--RSGK-LEEKYQPTIKVSQERA-KS 296 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~---~--~~~~-~~~~~~~~~~~~~~k~-~~ 296 (322)
++|+|++|+|++++.+++++. ++.||++ ++++|++|+++.+.+..+.. . +... ..........+|++|+ +.
T Consensus 230 rd~i~v~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 308 (340)
T PLN02653 230 RDWGFAGDYVEAMWLMLQQEK-PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREV 308 (340)
T ss_pred ecceeHHHHHHHHHHHHhcCC-CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHH
Confidence 999999999999999998754 4678665 78899999999999998731 1 1111 1123344567899999 88
Q ss_pred hCCcc-cchhhhHHHHHHHHHH
Q 020747 297 LGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 297 lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
|||+| ++++|+|+++++|++.
T Consensus 309 lgw~p~~~l~~gi~~~~~~~~~ 330 (340)
T PLN02653 309 LGWKPKVGFEQLVKMMVDEDLE 330 (340)
T ss_pred hCCCCCCCHHHHHHHHHHHHHH
Confidence 99999 9999999999999875
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=332.80 Aligned_cols=302 Identities=18% Similarity=0.242 Sum_probs=228.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc-hHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS-FDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~v 83 (322)
+++|+|||||||||||++|+++|+++ ||+|++++|...... .. .. ..+++++.+|++|... ++++++++|+|
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~--~~---~~-~~~~~~~~gDl~d~~~~l~~~l~~~D~V 386 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS--RF---LG-HPRFHFVEGDISIHSEWIEYHIKKCDVV 386 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh--hh---cC-CCceEEEeccccCcHHHHHHHhcCCCEE
Confidence 35789999999999999999999986 799999998753321 11 11 2468899999998765 57788999999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc-ccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC-KEN 161 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~~ 161 (322)
||+||.... .....+...+++|+.++.+++++|++. + ++|||+||. .+|+... ..+++|+++..+..+ ..+
T Consensus 387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~-~vyg~~~----~~~~~E~~~~~~~~p~~~p 459 (660)
T PRK08125 387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTS-EVYGMCT----DKYFDEDTSNLIVGPINKQ 459 (660)
T ss_pred EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcch-hhcCCCC----CCCcCccccccccCCCCCC
Confidence 999997543 223345678999999999999999997 6 799999998 6776543 456888875421111 112
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-------CCccHHHHHHHHcCCC--CCC---CCCccee
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-------LNFGAEVILNLINGDQ--SFA---FPYIFVE 229 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~--~~~---~~~~~i~ 229 (322)
.+.|+.||.++|++++.+++.++++++++||+++|||+.... ......++.++..+.+ +++ +.++|+|
T Consensus 460 ~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~ 539 (660)
T PRK08125 460 RWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTD 539 (660)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceee
Confidence 256999999999999999988899999999999999975421 1224456666666663 233 7899999
Q ss_pred HHHHHHHHHHhhcCCC--C-CccEEEec-C-CCCHHHHHHHHHHhCCCCC----CCCCC--c-----------cCCCCcc
Q 020747 230 IRDVVYAHIRALEVPK--A-SGRYLLAG-S-VAQHSDILKFLREHYPTLL----RSGKL--E-----------EKYQPTI 287 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~--~-~g~~~~~~-~-~~~~~e~~~~i~~~~~~~~----~~~~~--~-----------~~~~~~~ 287 (322)
++|+|++++.+++++. . +++||+++ + .+|++|+++.+.+..+..+ +|... . ..+....
T Consensus 540 v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (660)
T PRK08125 540 IRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHR 619 (660)
T ss_pred HHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccccccccccccccc
Confidence 9999999999998752 2 34788775 3 6999999999999886321 22111 0 0122345
Q ss_pred ccchHHH-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 288 KVSQERA-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 288 ~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
.+|++|+ +.|||+| ++++|+|+++++|+++..-
T Consensus 620 ~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~ 654 (660)
T PRK08125 620 KPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_pred CCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccc
Confidence 6799999 7899999 9999999999999987643
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=284.69 Aligned_cols=296 Identities=19% Similarity=0.226 Sum_probs=238.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+++|+||||.||||||||++|..+||+|++++.-...-.. .+... .....++.+.-|+..+ ++.++|.|||+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~-n~~~~-~~~~~fel~~hdv~~p-----l~~evD~IyhL 98 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKE-NLEHW-IGHPNFELIRHDVVEP-----LLKEVDQIYHL 98 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchh-hcchh-ccCcceeEEEeechhH-----HHHHhhhhhhh
Confidence 35899999999999999999999999999999875432211 11111 1145677777777665 78889999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
|++.++ ....++.+++..|+.++.+++-.|++. + +||++.||+ .+||.+. ..|..|+.+.+-.+ ..+.+.|
T Consensus 99 Aapasp~~y~~npvktIktN~igtln~lglakrv-~-aR~l~aSTs-eVYgdp~----~hpq~e~ywg~vnp-igpr~cy 170 (350)
T KOG1429|consen 99 AAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTS-EVYGDPL----VHPQVETYWGNVNP-IGPRSCY 170 (350)
T ss_pred ccCCCCcccccCccceeeecchhhHHHHHHHHHh-C-ceEEEeecc-cccCCcc----cCCCccccccccCc-CCchhhh
Confidence 998765 456677899999999999999999997 5 799999999 8998865 67777776554332 2334679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc-cHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHH
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF-GAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~ 239 (322)
...|..+|.++..|.+++|+.+.|.|++++|||.+.-.... .+.++.+++++. .+++ |.|+|+|++|++++++.
T Consensus 171 degKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~ 250 (350)
T KOG1429|consen 171 DEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLR 250 (350)
T ss_pred hHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHH
Confidence 99999999999999999999999999999999987654443 466777888887 4565 99999999999999999
Q ss_pred hhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc--cCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHH
Q 020747 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESL 315 (322)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~ 315 (322)
+++++..+.+++.+++-+|..|+++++.+..+....+.... ..+.....-|++++ +.|||.| .+|+|+|..++.|+
T Consensus 251 Lm~s~~~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~f 330 (350)
T KOG1429|consen 251 LMESDYRGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTVTYF 330 (350)
T ss_pred HhcCCCcCCcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHHHHHH
Confidence 99998655556666889999999999999985443333222 45566778999999 8899999 99999999999998
Q ss_pred HH
Q 020747 316 ME 317 (322)
Q Consensus 316 ~~ 317 (322)
+.
T Consensus 331 r~ 332 (350)
T KOG1429|consen 331 RE 332 (350)
T ss_pred HH
Confidence 75
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=307.89 Aligned_cols=302 Identities=18% Similarity=0.230 Sum_probs=225.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
|+|||||||||||++|+++|+++|++ |+++++.........+..+.. ..+++++.+|++|.+++.++++ ++|+|||
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSD-SERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhccc-CCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 47999999999999999999999976 555554321111112221111 2457889999999999999987 4899999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhc--------CCccEEEEecchhhhccCCCCCC------CCccccCC
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKV--------HSIKRVVLTSSIGAMLLNETPMT------PDVVIDET 150 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~--------~~~~~~i~~SS~~~~~~~~~~~~------~~~~~~E~ 150 (322)
+||.... .....+..++++|+.|+.+++++|++. .++++||++||. .+|+...... ...+++|+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~~~~~~E~ 158 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTD-EVYGDLPHPDEVENSEELPLFTET 158 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecch-hhcCCCCccccccccccCCCcccc
Confidence 9997533 223345789999999999999999874 145799999998 5665421100 01246787
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~ 225 (322)
++..|. +.|+.||.++|.+++.++++++++++++||++||||..... .....++.++..+. ++++ +.+
T Consensus 159 ~~~~p~------~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~ 231 (352)
T PRK10084 159 TAYAPS------SPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIR 231 (352)
T ss_pred CCCCCC------ChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCcc-chHHHHHHHHhcCCCeEEeCCCCeEE
Confidence 776665 67999999999999999988999999999999999986432 23455566666665 3343 789
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC-C--CCCC--Cc-----cCCCCccccchHHH
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL-L--RSGK--LE-----EKYQPTIKVSQERA 294 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~--~~~~--~~-----~~~~~~~~~~~~k~ 294 (322)
+|+|++|+|++++.+++++..++.||++ ++..+++|+++.+++.++.. + .+.. .. ......+.+|++|+
T Consensus 232 ~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (352)
T PRK10084 232 DWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKI 311 (352)
T ss_pred eeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHHH
Confidence 9999999999999999876556689877 57889999999999988632 1 1110 00 22234567899999
Q ss_pred -HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 295 -KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 295 -~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
+++||+| ++++++|+++++|++.+.
T Consensus 312 ~~~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 312 SRELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred HHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 7799999 999999999999998753
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=284.25 Aligned_cols=300 Identities=19% Similarity=0.234 Sum_probs=236.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 81 (322)
.+.++++||||+||||++.+..+..+- ++.+.++.-.--.....+++. .+.++.+++++|+.+...+..++. .+|
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~-~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPV-RNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhh-ccCCCceEeeccccchHHHHhhhccCchh
Confidence 456899999999999999999999873 555555432211111222222 235789999999999888877776 689
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCcccc-CCCCCCccccc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVID-ETWFSNPVLCK 159 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~-E~~~~~~~~~~ 159 (322)
.|+|+|+.... .+..++......|+.++..|+++++...++++|||+||. .|||... +.... |.+.++|.
T Consensus 83 ~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTd-eVYGds~----~~~~~~E~s~~nPt--- 154 (331)
T KOG0747|consen 83 TVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTD-EVYGDSD----EDAVVGEASLLNPT--- 154 (331)
T ss_pred hhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEeccc-ceecCcc----ccccccccccCCCC---
Confidence 99999998654 344455678889999999999999998789999999999 8888876 33333 88888888
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVV 234 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a 234 (322)
++|+++|+++|.++++|...++++++++|.++||||.+.+. ..++.++.....+. ++.+ +.++|+|++|++
T Consensus 155 ---npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~-klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ 230 (331)
T KOG0747|consen 155 ---NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE-KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVS 230 (331)
T ss_pred ---CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChH-HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHH
Confidence 88999999999999999999999999999999999998763 45566666555555 4444 899999999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC----CCCCCC-----CccCCCCccccchHHHHhhCCcc-cc
Q 020747 235 YAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPT----LLRSGK-----LEEKYQPTIKVSQERAKSLGINF-TP 303 (322)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~----~~~~~~-----~~~~~~~~~~~~~~k~~~lg~~~-~~ 303 (322)
+++..+++.+..+.+||++ +...+.-|+++.|.+.+.. .+.+.+ ..+.....+.++.+|++.|||+| ++
T Consensus 231 ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~LGw~~~~p 310 (331)
T KOG0747|consen 231 EAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKLGWRPTTP 310 (331)
T ss_pred HHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhcCCcccCc
Confidence 9999999997667789766 6889999999988887632 111111 11334456889999999999999 99
Q ss_pred hhhhHHHHHHHHHHc
Q 020747 304 WEVGVRGCIESLMEK 318 (322)
Q Consensus 304 ~~~~l~~~~~~~~~~ 318 (322)
|++||+.+++||..+
T Consensus 311 ~~eGLrktie~y~~~ 325 (331)
T KOG0747|consen 311 WEEGLRKTIEWYTKN 325 (331)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999764
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=304.31 Aligned_cols=302 Identities=20% Similarity=0.198 Sum_probs=227.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhcc-CCCCcEEEEEccCCCccchHHhhC--CC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELD-GATERLHLFKANLLEEGSFDSAVD--GC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~--~~ 80 (322)
|++|+|+|||||||||++|+++|+++|++|++++|....... ....... ....++.++.+|++|++++.++++ ++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999876432211 1111111 112457889999999999998886 68
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+||.... .....+...+++|+.++.+++++|++. ++++||++||. .+|+... ..+++|+.+..+.
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~-~vyg~~~----~~~~~E~~~~~~~--- 153 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCKKLVFSSSA-TVYGQPE----EVPCTEEFPLSAT--- 153 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccH-HHhCCCC----CCCCCCCCCCCCC---
Confidence 999999986532 223455788999999999999999987 78999999998 6676543 5678999887765
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH-cCccEEEEcCCCccCCCCCC------C-CC-ccHHHHHHHHcCC-CCC--------
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKE-NGIDLVAIHPGTVIGPFFQP------I-LN-FGAEVILNLINGD-QSF-------- 221 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~rp~~v~G~~~~~------~-~~-~~~~~~~~~~~g~-~~~-------- 221 (322)
+.|+.+|.++|++++.++.. .+++++++|++++||+.... . .. ....++.++..+. +.+
T Consensus 154 ---~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 230 (352)
T PLN02240 154 ---NPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYP 230 (352)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCC
Confidence 67999999999999988765 58999999999999975321 1 11 1223344444443 211
Q ss_pred ---C-CCCcceeHHHHHHHHHHhhcCC----CC-CccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccc
Q 020747 222 ---A-FPYIFVEIRDVVYAHIRALEVP----KA-SGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIK 288 (322)
Q Consensus 222 ---~-~~~~~i~~~D~a~~~~~~~~~~----~~-~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~ 288 (322)
+ +.++|+|++|+|++++.+++.. .. ++.||++ ++++|++|+++.+.+.++.. .+.... ........
T Consensus 231 ~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~ 309 (352)
T PLN02240 231 TKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKK-IPLKLAPRRPGDAEEVY 309 (352)
T ss_pred CCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCC-CCceeCCCCCCChhhhh
Confidence 1 6789999999999999888642 23 3488775 78999999999999998632 222111 22334556
Q ss_pred cchHHH-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 289 VSQERA-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 289 ~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
.|++|+ ++|||+| ++++|+|+++++|++.++.
T Consensus 310 ~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 343 (352)
T PLN02240 310 ASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPY 343 (352)
T ss_pred cCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 799999 8899999 8999999999999998653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=328.80 Aligned_cols=305 Identities=19% Similarity=0.217 Sum_probs=230.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh--CCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV--DGCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d 81 (322)
.+.|+|||||||||||++|+++|+++ |++|++++|.........+.... ...+++++.+|++|++.+..++ .++|
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSK-SSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcc-cCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 45689999999999999999999998 68999998753111111111111 1346899999999988888766 5799
Q ss_pred EEEEcccCcccC-CCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 82 GVFHTASPVIFL-SDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 82 ~vih~A~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
+|||+||..... ...++...+++|+.+|.+++++|++...+++|||+||. .+|+..... .....+|+++..|.
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~-~vyg~~~~~-~~~~~~E~~~~~p~---- 156 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTD-EVYGETDED-ADVGNHEASQLLPT---- 156 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch-HHhCCCccc-cccCccccCCCCCC----
Confidence 999999976432 22334578899999999999999987338999999999 666654310 01124566665554
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVY 235 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~ 235 (322)
++|+.+|.++|++++.++++++++++++||++||||..... .....++..+..|. ++++ +.++|+|++|+|+
T Consensus 157 --~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~-~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~ 233 (668)
T PLN02260 157 --NPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPE-KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAE 233 (668)
T ss_pred --CCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcc-cHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHH
Confidence 67999999999999999988899999999999999986432 23344555556665 3333 6789999999999
Q ss_pred HHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCC---CC-CCccCCCCccccchHHHHhhCCcc-cchhhhHH
Q 020747 236 AHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLR---SG-KLEEKYQPTIKVSQERAKSLGINF-TPWEVGVR 309 (322)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~---~~-~~~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~ 309 (322)
++..+++.+..+++||++ ++.++++|+++.+++.+|..+. .. ...+.....+.+|++|+++|||+| ++++|+++
T Consensus 234 a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~lGw~p~~~~~egl~ 313 (668)
T PLN02260 234 AFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKKLGWQERTSWEEGLK 313 (668)
T ss_pred HHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHHcCCCCCCCHHHHHH
Confidence 999999876666789877 5789999999999999874321 11 111223345678999998899999 99999999
Q ss_pred HHHHHHHHcCC
Q 020747 310 GCIESLMEKGF 320 (322)
Q Consensus 310 ~~~~~~~~~~~ 320 (322)
++++|++.++.
T Consensus 314 ~~i~w~~~~~~ 324 (668)
T PLN02260 314 KTMEWYTSNPD 324 (668)
T ss_pred HHHHHHHhChh
Confidence 99999987643
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=296.52 Aligned_cols=296 Identities=30% Similarity=0.404 Sum_probs=231.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+||||+||||+++++.|+++|++|++++|+...... +. ..+++.+.+|++|+++++++++++|+|||+|+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~--~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN-----LE--GLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc-----cc--cCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 479999999999999999999999999999997644211 11 23578899999999999999999999999998
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
..... ...+...+++|+.++.++++++.+. ++++||++||. .+|+.... ..+++|+.+..+.. ..+.|+.+
T Consensus 74 ~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~-~~~~~~~~---~~~~~e~~~~~~~~---~~~~Y~~s 144 (328)
T TIGR03466 74 DYRLW-APDPEEMYAANVEGTRNLLRAALEA-GVERVVYTSSV-ATLGVRGD---GTPADETTPSSLDD---MIGHYKRS 144 (328)
T ss_pred ecccC-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEech-hhcCcCCC---CCCcCccCCCCccc---ccChHHHH
Confidence 64332 3445788999999999999999987 78999999998 55553221 45788887765531 12469999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcCCCC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPKA 246 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~~~~ 246 (322)
|.++|++++.++.+++++++++||+++||++...... ....+...+.+. +.+. ...+|+|++|+|++++.+++++..
T Consensus 145 K~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~ 223 (328)
T TIGR03466 145 KFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTP-TGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGRI 223 (328)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCc-HHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCCC
Confidence 9999999999998889999999999999998643221 223344444444 4333 567899999999999999988654
Q ss_pred CccEEEecCCCCHHHHHHHHHHhCCCC----CCCCCCc----------------cC---------CCCccccchHHH-Hh
Q 020747 247 SGRYLLAGSVAQHSDILKFLREHYPTL----LRSGKLE----------------EK---------YQPTIKVSQERA-KS 296 (322)
Q Consensus 247 ~g~~~~~~~~~~~~e~~~~i~~~~~~~----~~~~~~~----------------~~---------~~~~~~~~~~k~-~~ 296 (322)
+..|+++++.++++|+++.+.+.++.. .+|.+.. .+ ...+..+|++|+ +.
T Consensus 224 ~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 303 (328)
T TIGR03466 224 GERYILGGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRE 303 (328)
T ss_pred CceEEecCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHH
Confidence 447888888999999999999988742 2221110 00 013567899999 88
Q ss_pred hCCcccchhhhHHHHHHHHHHcCCC
Q 020747 297 LGINFTPWEVGVRGCIESLMEKGFL 321 (322)
Q Consensus 297 lg~~~~~~~~~l~~~~~~~~~~~~~ 321 (322)
|||+|++++++|+++++|+++++++
T Consensus 304 lg~~p~~~~~~i~~~~~~~~~~~~~ 328 (328)
T TIGR03466 304 LGYRQRPAREALRDAVEWFRANGYL 328 (328)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=291.24 Aligned_cols=286 Identities=32% Similarity=0.532 Sum_probs=216.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+++|+|||||||||++++++|+++||+|++++|+.+.... ..+..+.....+++++.+|++|.+++.+++.++|+|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 35799999999999999999999999999999986433211 12222222234688999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+++...... ..+..++++|+.|+.+++++|.+.+++++||++||..+++..........+++|+++..+.+...+..+|
T Consensus 85 ~~~~~~~~~-~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 163 (297)
T PLN02583 85 CFDPPSDYP-SYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWH 163 (297)
T ss_pred eCccCCccc-ccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHH
Confidence 886543322 2346789999999999999998864678999999986653221110114478888776555433333479
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
+.||..+|++++.+++..+++++++||++||||...... ..+.+. ..++ ..++|||++|+|++++.+++.
T Consensus 164 ~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~--------~~~~~~~~~~~~~~~~~v~V~Dva~a~~~al~~ 235 (297)
T PLN02583 164 ALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN--------PYLKGAAQMYENGVLVTVDVNFLVDAHIRAFED 235 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch--------hhhcCCcccCcccCcceEEHHHHHHHHHHHhcC
Confidence 999999999999998888999999999999999764321 122333 3333 667899999999999999998
Q ss_pred CCCCccEEEecCCCC-HHHHHHHHHHhCCCCCCCCCCc--cCCCCccccchHHHHhhCCcc
Q 020747 244 PKASGRYLLAGSVAQ-HSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSLGINF 301 (322)
Q Consensus 244 ~~~~g~~~~~~~~~~-~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~lg~~~ 301 (322)
+...|.|+++++..+ +.++++++++.+|..+++.... ........++++|+++||+++
T Consensus 236 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 296 (297)
T PLN02583 236 VSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEMQGSEVYQQRIRNKKLNKLMEDF 296 (297)
T ss_pred cccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCCcccccCCCccccccChHHHHHhCccc
Confidence 877779999987665 6789999999999877664211 233456789999999999864
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=296.63 Aligned_cols=298 Identities=17% Similarity=0.203 Sum_probs=226.9
Q ss_pred EEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFH 85 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih 85 (322)
+|+|||||||||++++++|+++| ++|++++|.......+.+..+.. ..+++++.+|++|++++.+++++ +|+|||
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~ 79 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED-NPRYRFVKGDIGDRELVSRLFTEHQPDAVVH 79 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc-CCCcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence 58999999999999999999987 78988876432211112222211 24678899999999999999987 899999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
+|+.... .....+...+++|+.++.+++++|.+.....++|++||. .+|+.... ..+++|+.+..|. +.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~-~v~g~~~~---~~~~~e~~~~~~~------~~ 149 (317)
T TIGR01181 80 FAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTD-EVYGDLEK---GDAFTETTPLAPS------SP 149 (317)
T ss_pred cccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeecc-ceeCCCCC---CCCcCCCCCCCCC------Cc
Confidence 9997543 223455678999999999999999886222389999998 56655431 3367888776654 56
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~ 239 (322)
|+.+|..+|.+++.++.+.+++++++||+.+|||...+. .....++.++..+. ++++ +.++|+|++|+++++..
T Consensus 150 Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~ 228 (317)
T TIGR01181 150 YSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE-KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYL 228 (317)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc-cHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHH
Confidence 999999999999999888899999999999999976432 23345556666665 2333 67899999999999999
Q ss_pred hhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC--CCCC-CccCCCCccccchHHH-HhhCCcc-cchhhhHHHHHH
Q 020747 240 ALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL--RSGK-LEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIE 313 (322)
Q Consensus 240 ~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~--~~~~-~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~ 313 (322)
++++...+++|+++ ++.++++|+++++.+.++..+ +... ........+.+|++|+ +.|||+| ++++++++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~ 308 (317)
T TIGR01181 229 VLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQ 308 (317)
T ss_pred HHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 99876556689776 578999999999999987422 1110 0112233456899999 7899999 899999999999
Q ss_pred HHHHcC
Q 020747 314 SLMEKG 319 (322)
Q Consensus 314 ~~~~~~ 319 (322)
|++++.
T Consensus 309 ~~~~~~ 314 (317)
T TIGR01181 309 WYLDNE 314 (317)
T ss_pred HHHhcc
Confidence 998653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=298.08 Aligned_cols=280 Identities=19% Similarity=0.200 Sum_probs=206.3
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc----hHHhhC-----CCC
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS----FDSAVD-----GCD 81 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~~-----~~d 81 (322)
|||||||||||+||+++|+++|++++++.|+...... . .....+|+.|..+ ++++++ ++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~--~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d 70 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--F---------VNLVDLDIADYMDKEDFLAQIMAGDDFGDIE 70 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH--H---------HhhhhhhhhhhhhHHHHHHHHhcccccCCcc
Confidence 8999999999999999999999987777665433211 0 1123355555433 233332 689
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
+|||+||....... +....++.|+.++.+++++|++. ++ +||++||. ++|+... ..+++|+.+..|.
T Consensus 71 ~Vih~A~~~~~~~~-~~~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~-~vyg~~~----~~~~~E~~~~~p~----- 137 (308)
T PRK11150 71 AIFHEGACSSTTEW-DGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSA-ATYGGRT----DDFIEEREYEKPL----- 137 (308)
T ss_pred EEEECceecCCcCC-ChHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcch-HHhCcCC----CCCCccCCCCCCC-----
Confidence 99999986543222 33468899999999999999997 66 69999999 6676543 3467787766665
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--cc-HHHHHHHHcCC-C-CCC----CCCcceeHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FG-AEVILNLINGD-Q-SFA----FPYIFVEIRD 232 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~-~~~~~~~~~g~-~-~~~----~~~~~i~~~D 232 (322)
++|+.+|.++|++++.++..++++++++||+++|||+..+... .. ..+..++.+|. + +++ ..++|+|++|
T Consensus 138 -~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D 216 (308)
T PRK11150 138 -NVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGD 216 (308)
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHH
Confidence 6799999999999999988889999999999999998654221 11 22334566665 2 332 4789999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCC---CC--ccCCCCccccchHHHHhhCCcc--cch
Q 020747 233 VVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSG---KL--EEKYQPTIKVSQERAKSLGINF--TPW 304 (322)
Q Consensus 233 ~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~---~~--~~~~~~~~~~~~~k~~~lg~~~--~~~ 304 (322)
+|++++.+++.. .+|.||++ +.++|++|+++.+.+..+..++.. .. .........+|++|++.+||+| +++
T Consensus 217 ~a~a~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~g~~p~~~~~ 295 (308)
T PRK11150 217 VAAVNLWFWENG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRAAGYDKPFKTV 295 (308)
T ss_pred HHHHHHHHHhcC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHhcCCCCCCCCH
Confidence 999999998864 35688876 678999999999999886322211 11 1112234578999996689997 499
Q ss_pred hhhHHHHHHHHH
Q 020747 305 EVGVRGCIESLM 316 (322)
Q Consensus 305 ~~~l~~~~~~~~ 316 (322)
+++|+++++|+.
T Consensus 296 ~~gl~~~~~~~~ 307 (308)
T PRK11150 296 AEGVAEYMAWLN 307 (308)
T ss_pred HHHHHHHHHHhh
Confidence 999999999975
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=293.62 Aligned_cols=295 Identities=18% Similarity=0.190 Sum_probs=220.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
|+|+|||||||||++|+++|+++|++|++++|....... ..+.... ..++.++.+|++|++.+.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 479999999999999999999999999998765332211 1111111 2356788999999999998886 589999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCC-Ccccccccc
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS-NPVLCKENK 162 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~-~~~~~~~~~ 162 (322)
|+|+.... .....+...+++|+.++.+++++|++. ++++||++||. .+|+... ..+++|+++. .|.
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~-~~yg~~~----~~~~~E~~~~~~p~------ 146 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSA-TVYGDQP----KIPYVESFPTGTPQ------ 146 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccH-HhhCCCC----CCccccccCCCCCC------
Confidence 99986532 122344678999999999999999997 88999999998 6666543 5678888775 343
Q ss_pred hhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCC--------CCccHHHHHHHHcCC-CC-------C---C
Q 020747 163 EWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPI--------LNFGAEVILNLINGD-QS-------F---A 222 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~-~~-------~---~ 222 (322)
+.|+.+|.++|+++.++++++ +++++++|++++||+..... .......+.++..+. .. + .
T Consensus 147 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
T PRK10675 147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED 226 (338)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCC
Confidence 679999999999999998764 89999999999999742111 011123344444432 21 1 1
Q ss_pred --CCCcceeHHHHHHHHHHhhcC--CCCC-ccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHH
Q 020747 223 --FPYIFVEIRDVVYAHIRALEV--PKAS-GRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQER 293 (322)
Q Consensus 223 --~~~~~i~~~D~a~~~~~~~~~--~~~~-g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k 293 (322)
+.++|+|++|+|++++.+++. ...+ ++||++ ++.+|++|+++.+.+..+.. .+.... ........+|++|
T Consensus 227 g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~k 305 (338)
T PRK10675 227 GTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWADASK 305 (338)
T ss_pred CcEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCC-CCeeeCCCCCCchhhhhcCHHH
Confidence 678999999999999999875 2223 478776 67899999999999998742 121111 2234566789999
Q ss_pred H-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 294 A-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 294 ~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+ +++||+| ++++++|+++++|++++
T Consensus 306 ~~~~lg~~p~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 306 ADRELNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred HHHHhCCCCcCcHHHHHHHHHHHHHhh
Confidence 9 8899999 99999999999999874
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=279.12 Aligned_cols=300 Identities=21% Similarity=0.235 Sum_probs=239.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 83 (322)
.++||||||+||||+|.+.+|+++||+|+++|.-.+.... ...+++.....++.++++|++|.++++++|+ ..|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 4799999999999999999999999999999875433322 3334444445789999999999999999998 57999
Q ss_pred EEcccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCC-cccccc
Q 020747 84 FHTASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN-PVLCKE 160 (322)
Q Consensus 84 ih~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~-~~~~~~ 160 (322)
+|+|+.-.. ...++ .+++..|+.||.++++.|++. +++.+|+.||+ ++||.+. ..|++|+++.. |.
T Consensus 82 ~Hfa~~~~vgeS~~~p-~~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssa-tvYG~p~----~ip~te~~~t~~p~---- 150 (343)
T KOG1371|consen 82 MHFAALAAVGESMENP-LSYYHNNIAGTLNLLEVMKAH-NVKALVFSSSA-TVYGLPT----KVPITEEDPTDQPT---- 150 (343)
T ss_pred EeehhhhccchhhhCc-hhheehhhhhHHHHHHHHHHc-CCceEEEecce-eeecCcc----eeeccCcCCCCCCC----
Confidence 999997543 44444 899999999999999999999 79999999999 8888886 78999999887 44
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccC--CCCCCC----C-C-ccHHHHHHHHcCC-C-------CC---
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIG--PFFQPI----L-N-FGAEVILNLINGD-Q-------SF--- 221 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G--~~~~~~----~-~-~~~~~~~~~~~g~-~-------~~--- 221 (322)
++|+.+|...|+++..+...++..++.+|.++++| |..... . + .....+...+.|. + .+
T Consensus 151 --~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~ 228 (343)
T KOG1371|consen 151 --NPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTI 228 (343)
T ss_pred --CcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccccc
Confidence 78999999999999999999899999999999999 432211 1 1 1111223322222 1 11
Q ss_pred -C-CCCcceeHHHHHHHHHHhhcCCCC---CccEEEe-cCCCCHHHHHHHHHHhCCCC-CCCC-CCccCCCCccccchHH
Q 020747 222 -A-FPYIFVEIRDVVYAHIRALEVPKA---SGRYLLA-GSVAQHSDILKFLREHYPTL-LRSG-KLEEKYQPTIKVSQER 293 (322)
Q Consensus 222 -~-~~~~~i~~~D~a~~~~~~~~~~~~---~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~k 293 (322)
+ +.++++|+-|.|+..+.+++.... .++||.+ +.+.++.+++++++++.+.. +++. ..+..+......+.++
T Consensus 229 dgt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~ 308 (343)
T KOG1371|consen 229 DGTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSK 308 (343)
T ss_pred CCCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHH
Confidence 2 789999999999999999987543 2478766 78899999999999998743 2222 1135667778889999
Q ss_pred H-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 294 A-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 294 ~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
+ ++|||++ +.++++++++++|+.++++
T Consensus 309 a~~elgwk~~~~iee~c~dlw~W~~~np~ 337 (343)
T KOG1371|consen 309 AQRELGWKAKYGLQEMLKDLWRWQKQNPS 337 (343)
T ss_pred HHHHhCCccccCHHHHHHHHHHHHhcCCC
Confidence 9 9999999 9999999999999998765
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=288.20 Aligned_cols=290 Identities=25% Similarity=0.311 Sum_probs=229.4
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCC-CEEEEccc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGC-DGVFHTAS 88 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-d~vih~A~ 88 (322)
+|||||||||||++|+++|+++||+|++++|......... ..+.++.+|++|.+.+.++.+++ |+|||+|+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc--------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 4999999999999999999999999999999775543211 35788999999998888888888 99999999
Q ss_pred CcccCCCC--CcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCC-CCCCcccccccchhH
Q 020747 89 PVIFLSDN--PQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDET-WFSNPVLCKENKEWY 165 (322)
Q Consensus 89 ~~~~~~~~--~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~-~~~~~~~~~~~~~~Y 165 (322)
........ ++...+++|+.++.+++++|++. ++++|||.||.+.+++... ..+++|+ .+..|. ++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~~~~v~~ss~~~~~~~~~----~~~~~E~~~~~~p~------~~Y 142 (314)
T COG0451 74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGDPP----PLPIDEDLGPPRPL------NPY 142 (314)
T ss_pred cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCCCceECCCCC----CCCcccccCCCCCC------CHH
Confidence 86542221 34568999999999999999996 8999999888744554422 4488888 455554 479
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHcCCC--CCC----CCCcceeHHHHHHHH
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF--GAEVILNLINGDQ--SFA----FPYIFVEIRDVVYAH 237 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~--~~~----~~~~~i~~~D~a~~~ 237 (322)
+.+|.++|+++..+...++++++++||+++|||+..+.... ...++.++..+.+ .+. ..++++|++|+++++
T Consensus 143 g~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 222 (314)
T COG0451 143 GVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADAL 222 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHH
Confidence 99999999999999988899999999999999998765321 2233444555553 221 557899999999999
Q ss_pred HHhhcCCCCCccEEEecC--CCCHHHHHHHHHHhCCCCCCC--C-C--CccCCCCccccchHHH-HhhCCcc-cchhhhH
Q 020747 238 IRALEVPKASGRYLLAGS--VAQHSDILKFLREHYPTLLRS--G-K--LEEKYQPTIKVSQERA-KSLGINF-TPWEVGV 308 (322)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~--~~~~~e~~~~i~~~~~~~~~~--~-~--~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l 308 (322)
+.+++++... .|+++++ .++.+|+++.+.+.++..... . . ..........+|.+|+ +.|||.| .++++++
T Consensus 223 ~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i 301 (314)
T COG0451 223 LLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGL 301 (314)
T ss_pred HHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHH
Confidence 9999987666 8888753 799999999999998754221 1 1 1234556778999999 8999999 8999999
Q ss_pred HHHHHHHHHcC
Q 020747 309 RGCIESLMEKG 319 (322)
Q Consensus 309 ~~~~~~~~~~~ 319 (322)
.++++|+....
T Consensus 302 ~~~~~~~~~~~ 312 (314)
T COG0451 302 ADTLEWLLKKL 312 (314)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=293.03 Aligned_cols=295 Identities=28% Similarity=0.457 Sum_probs=217.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC------CCCcEEEEEccCCCccchHHhhCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG------ATERLHLFKANLLEEGSFDSAVDG 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (322)
+++|+||||||+||||++++++|+++|++|++++|+.+.. +.+..+.. ...++.++.+|++|++++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~--~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK--EKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 5678999999999999999999999999999888865322 12222110 013578899999999999999999
Q ss_pred CCEEEEcccCcccCC-CCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchh-hhccCCCCCCCCccccCCCCCCccc
Q 020747 80 CDGVFHTASPVIFLS-DNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG-AMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 80 ~d~vih~A~~~~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~-~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
+|+|||+|+.+.... ........++|+.++.+++++|++..++++||++||.. .+|+.........+++|+++.....
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~ 208 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESF 208 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhh
Confidence 999999999764321 11224567889999999999998854689999999974 3555321100023477776544333
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHH
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVY 235 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~ 235 (322)
+..+.++|+.||.++|++++.+++.+|++++++||++||||+...... ..+.+.+.|. ++++ ..++|+|++|+|+
T Consensus 209 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~---~~~~~~~~g~~~~~g~g~~~~v~V~Dva~ 285 (367)
T PLN02686 209 CRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS---TATIAYLKGAQEMLADGLLATADVERLAE 285 (367)
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC---hhHHHHhcCCCccCCCCCcCeEEHHHHHH
Confidence 333446799999999999999998889999999999999998543221 1233455555 5555 6668999999999
Q ss_pred HHHHhhcCC---CCCccEEEecCCCCHHHHHHHHHHhCCCC-CC-CCCCc-cCCCCccccchHHH-HhhCCcc-cchh
Q 020747 236 AHIRALEVP---KASGRYLLAGSVAQHSDILKFLREHYPTL-LR-SGKLE-EKYQPTIKVSQERA-KSLGINF-TPWE 305 (322)
Q Consensus 236 ~~~~~~~~~---~~~g~~~~~~~~~~~~e~~~~i~~~~~~~-~~-~~~~~-~~~~~~~~~~~~k~-~~lg~~~-~~~~ 305 (322)
+++.+++.. ..+++|++++..++++|+++.+.+.++.. .. ..... ..+...+..|++|+ ++|||+| -.++
T Consensus 286 A~~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~~~~~~~ 363 (367)
T PLN02686 286 AHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRLMSRTRRCCYD 363 (367)
T ss_pred HHHHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHHHHHhhhcccc
Confidence 999999852 34458888899999999999999998732 11 11112 34567788999999 8899998 4343
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=288.92 Aligned_cols=268 Identities=15% Similarity=0.124 Sum_probs=204.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+||||||+||||++|+++|+++| +|++++|... .+.+|++|++.++++++ ++|+|||+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~------------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 61 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST------------------DYCGDFSNPEGVAETVRKIRPDVIVNA 61 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc------------------cccCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 479999999999999999999999 7888887531 23589999999999888 58999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... .....+...+++|+.++.+++++|++. ++ ++||+||. .+|+... ..+++|+++..|. ++|
T Consensus 62 Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~-~Vy~~~~----~~p~~E~~~~~P~------~~Y 128 (299)
T PRK09987 62 AAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTD-YVFPGTG----DIPWQETDATAPL------NVY 128 (299)
T ss_pred CccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccc-eEECCCC----CCCcCCCCCCCCC------CHH
Confidence 998654 233455677899999999999999997 65 79999998 5666543 5688999887776 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-----CCCcceeHHHHHHHHH
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-----FPYIFVEIRDVVYAHI 238 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-----~~~~~i~~~D~a~~~~ 238 (322)
+.||.++|+++..++ .+.+++||+++|||... .....++..+..+. .+++ +.+.+.+++|+++++.
T Consensus 129 g~sK~~~E~~~~~~~----~~~~ilR~~~vyGp~~~---~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~ 201 (299)
T PRK09987 129 GETKLAGEKALQEHC----AKHLIFRTSWVYAGKGN---NFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIR 201 (299)
T ss_pred HHHHHHHHHHHHHhC----CCEEEEecceecCCCCC---CHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHH
Confidence 999999999997654 36799999999999753 22344454444554 2332 4455667888888988
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC---C-------CCCCC---CccCCCCccccchHHH-HhhCCcccc
Q 020747 239 RALEVPKASGRYLLA-GSVAQHSDILKFLREHYPT---L-------LRSGK---LEEKYQPTIKVSQERA-KSLGINFTP 303 (322)
Q Consensus 239 ~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~---~-------~~~~~---~~~~~~~~~~~~~~k~-~~lg~~~~~ 303 (322)
.++..+...|+||++ ++.+|+.|+++.|.+..+. . +.+.. ..........+|++|+ +.+||+|++
T Consensus 202 ~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~~ 281 (299)
T PRK09987 202 VALNKPEVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLPD 281 (299)
T ss_pred HhhccCCCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCcc
Confidence 887665445789776 6789999999999775321 1 11110 0122345667899999 779999999
Q ss_pred hhhhHHHHHHHH
Q 020747 304 WEVGVRGCIESL 315 (322)
Q Consensus 304 ~~~~l~~~~~~~ 315 (322)
|+++|+++++.+
T Consensus 282 ~~~~l~~~~~~~ 293 (299)
T PRK09987 282 WQVGVKRMLTEL 293 (299)
T ss_pred HHHHHHHHHHHH
Confidence 999999999765
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=289.18 Aligned_cols=278 Identities=17% Similarity=0.164 Sum_probs=210.8
Q ss_pred EEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEcccC
Q 020747 12 CVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHTASP 89 (322)
Q Consensus 12 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~A~~ 89 (322)
||||||||||++|+++|+++|++|+++.+. ..+|++|.++++++++ ++|+|||+|+.
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~---------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~ 59 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH---------------------KELDLTRQADVEAFFAKEKPTYVILAAAK 59 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc---------------------ccCCCCCHHHHHHHHhccCCCEEEEeeee
Confidence 699999999999999999999998765322 1389999999998887 57999999997
Q ss_pred ccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc-hhHH
Q 020747 90 VIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EWYS 166 (322)
Q Consensus 90 ~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~-~~Y~ 166 (322)
... .....+...++.|+.++.+++++|++. +++++|++||. .+|+... ..+++|+++.... ..+. ..|+
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~-~vyg~~~----~~~~~E~~~~~~~--~~p~~~~Y~ 131 (306)
T PLN02725 60 VGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSS-CIYPKFA----PQPIPETALLTGP--PEPTNEWYA 131 (306)
T ss_pred ecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCce-eecCCCC----CCCCCHHHhccCC--CCCCcchHH
Confidence 532 223345678999999999999999997 88999999998 6676543 5678887643211 1111 2499
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC---CCccHHHHHH----HHcCCC--C-CC---CCCcceeHHHH
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI---LNFGAEVILN----LINGDQ--S-FA---FPYIFVEIRDV 233 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~----~~~g~~--~-~~---~~~~~i~~~D~ 233 (322)
.+|.++|++++.+++.++++++++||+.+|||..... ......++.. ...+.+ . ++ +.++|+|++|+
T Consensus 132 ~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 211 (306)
T PLN02725 132 IAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDL 211 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHH
Confidence 9999999999999988899999999999999975321 1122333332 233432 2 22 67899999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCCCCc-cCCCCccccchHHHHhhCCcc-cchhhhHH
Q 020747 234 VYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-RSGKLE-EKYQPTIKVSQERAKSLGINF-TPWEVGVR 309 (322)
Q Consensus 234 a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~-~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~ 309 (322)
+++++.+++.....+.||++ +..++++|+++.+++.++... +..... ........+|++|++.+||+| ++++++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~ 291 (306)
T PLN02725 212 ADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRSLGWDPKFSLKDGLQ 291 (306)
T ss_pred HHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHHHhCCCCCCCHHHHHH
Confidence 99999999875545677776 678999999999999886321 111111 222345678999997799999 89999999
Q ss_pred HHHHHHHHc
Q 020747 310 GCIESLMEK 318 (322)
Q Consensus 310 ~~~~~~~~~ 318 (322)
++++|++++
T Consensus 292 ~~~~~~~~~ 300 (306)
T PLN02725 292 ETYKWYLEN 300 (306)
T ss_pred HHHHHHHhh
Confidence 999999865
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=277.66 Aligned_cols=282 Identities=20% Similarity=0.197 Sum_probs=210.0
Q ss_pred EEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----CCCEEEE
Q 020747 11 VCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----GCDGVFH 85 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vih 85 (322)
|||||||||||++++++|+++|+ +|++++|..... .+.++. ...+.+|+++.+.++.+.+ ++|+|||
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~---~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh 72 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH---KFLNLA-----DLVIADYIDKEDFLDRLEKGAFGKIEAIFH 72 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch---hhhhhh-----heeeeccCcchhHHHHHHhhccCCCCEEEE
Confidence 68999999999999999999997 788887754322 111111 1346788888877777664 7999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCC-Ccccccccchh
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS-NPVLCKENKEW 164 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~-~~~~~~~~~~~ 164 (322)
+|+..... ..++...+++|+.++.+++++|++. ++ +||++||. .+|+.. ..+++|+++. .|. +.
T Consensus 73 ~A~~~~~~-~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~-~vy~~~-----~~~~~e~~~~~~p~------~~ 137 (314)
T TIGR02197 73 QGACSDTT-ETDGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSA-ATYGDG-----EAGFREGRELERPL------NV 137 (314)
T ss_pred CccccCcc-ccchHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccH-HhcCCC-----CCCcccccCcCCCC------CH
Confidence 99975433 3345778999999999999999987 65 79999998 677654 2345665543 232 67
Q ss_pred HHHHHHHHHHHHHHHHHH--cCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCC--CCC------C---CCCcce
Q 020747 165 YSLAKTLAEEAAWKFAKE--NGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGD--QSF------A---FPYIFV 228 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~--~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~--~~~------~---~~~~~i 228 (322)
|+.+|..+|.+++++..+ .+++++++||+++|||...... .....++.++..+. .++ + +.++|+
T Consensus 138 Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 217 (314)
T TIGR02197 138 YGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFV 217 (314)
T ss_pred HHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeE
Confidence 999999999999876433 3679999999999999864321 12234455555555 221 1 568999
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC------CCCCCccCCCCccccchHHH-HhhCCc
Q 020747 229 EIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL------RSGKLEEKYQPTIKVSQERA-KSLGIN 300 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~k~-~~lg~~ 300 (322)
|++|++++++.++.. ..++.||++ ++++|++|+++.+++.++... .|............+|++|+ +.+||+
T Consensus 218 ~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 296 (314)
T TIGR02197 218 YVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYG 296 (314)
T ss_pred EHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCC
Confidence 999999999999987 456788876 579999999999999987321 22211112234567899999 788999
Q ss_pred c-cchhhhHHHHHHHHH
Q 020747 301 F-TPWEVGVRGCIESLM 316 (322)
Q Consensus 301 ~-~~~~~~l~~~~~~~~ 316 (322)
| ++++++++++++|+.
T Consensus 297 p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 297 PFTTLEEGVKDYVQWLL 313 (314)
T ss_pred CcccHHHHHHHHHHHHh
Confidence 9 999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=274.45 Aligned_cols=248 Identities=29% Similarity=0.394 Sum_probs=187.2
Q ss_pred EEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcccC
Q 020747 12 CVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASP 89 (322)
Q Consensus 12 lVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~ 89 (322)
|||||+||||++|+++|+++| ++|.++++............ ....+++++|++|+++++++++++|+|||+|++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~----~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~ 76 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQK----SGVKEYIQGDITDPESLEEALEGVDVVFHTAAP 76 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhc----ccceeEEEeccccHHHHHHHhcCCceEEEeCcc
Confidence 699999999999999999999 78999988765432111111 122348999999999999999999999999998
Q ss_pred cccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHH
Q 020747 90 VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK 169 (322)
Q Consensus 90 ~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK 169 (322)
.......+.++++++|+.||+|++++|++. ++++|||+||..++...... .+-...+|+.+..+. ..+.|+.||
T Consensus 77 ~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~~vv~~~~~~-~~~~~~dE~~~~~~~----~~~~Y~~SK 150 (280)
T PF01073_consen 77 VPPWGDYPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSISVVFDNYKG-DPIINGDEDTPYPSS----PLDPYAESK 150 (280)
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCcceeEeccCC-CCcccCCcCCccccc----ccCchHHHH
Confidence 766545666789999999999999999998 99999999999665542221 001123565543332 336799999
Q ss_pred HHHHHHHHHHHH---Hc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHH
Q 020747 170 TLAEEAAWKFAK---EN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 170 ~~~e~~~~~~~~---~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~ 239 (322)
+.+|+++.+... +. .+..++|||+.||||++....+.. ......|. ..++ ...+++|++|+|.+++.
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~---~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvl 227 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRL---VKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVL 227 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchh---hHHHHhcccceeecCCCceECcEeHHHHHHHHHH
Confidence 999999998765 22 499999999999999876543332 22233343 2222 57899999999999999
Q ss_pred hhcC-------CCCCc-cEEEe-cCCCC-HHHHHHHHHHhCCC
Q 020747 240 ALEV-------PKASG-RYLLA-GSVAQ-HSDILKFLREHYPT 272 (322)
Q Consensus 240 ~~~~-------~~~~g-~~~~~-~~~~~-~~e~~~~i~~~~~~ 272 (322)
+++. ....| .|+++ ++++. +.|+...+.+.+|.
T Consensus 228 A~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~ 270 (280)
T PF01073_consen 228 AAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGY 270 (280)
T ss_pred HHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCC
Confidence 8753 22345 77776 67888 99999999999874
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=272.23 Aligned_cols=264 Identities=18% Similarity=0.170 Sum_probs=206.0
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCC--CEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGC--DGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~vih~A 87 (322)
+|+|||||||||++++++|+++||+|++++|+ .+|+.++++++++++++ |+|||+|
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------------~~d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------------ccCCCCHHHHHHHHHhCCCCEEEECC
Confidence 58999999999999999999999999998874 36889999999999865 9999999
Q ss_pred cCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 88 SPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
+.... .....+...+++|+.++.+++++|++. +. +||++||. .+|+... ..+++|+++.++. +.|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~Ss~-~vy~~~~----~~~~~E~~~~~~~------~~Y~ 125 (287)
T TIGR01214 59 AYTDVDGAESDPEKAFAVNALAPQNLARAAARH-GA-RLVHISTD-YVFDGEG----KRPYREDDATNPL------NVYG 125 (287)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeee-eeecCCC----CCCCCCCCCCCCc------chhh
Confidence 97543 222345678899999999999999887 54 89999998 6665433 5678898877665 6799
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC-CCCcceeHHHHHHHHHHhhcC
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.+|.++|++++.+ +.+++++||+.+||+.... .....++..+..+.+ ..+ +.++++|++|+|++++.++..
T Consensus 126 ~~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 199 (287)
T TIGR01214 126 QSKLAGEQAIRAA----GPNALIVRTSWLYGGGGGR--NFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQR 199 (287)
T ss_pred HHHHHHHHHHHHh----CCCeEEEEeeecccCCCCC--CHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHhh
Confidence 9999999998754 7899999999999998432 223334444444442 234 678999999999999999987
Q ss_pred C-CCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCC---C--------c--cCCCCccccchHHH-HhhCCcccchhhh
Q 020747 244 P-KASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGK---L--------E--EKYQPTIKVSQERA-KSLGINFTPWEVG 307 (322)
Q Consensus 244 ~-~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~---~--------~--~~~~~~~~~~~~k~-~~lg~~~~~~~~~ 307 (322)
+ ..++.||++ ++.+++.|+++.+++.++....... . . ........+|++|+ +.|||.+++++++
T Consensus 200 ~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~~~~~~~ 279 (287)
T TIGR01214 200 LARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPLPHWREA 279 (287)
T ss_pred ccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCCccHHHH
Confidence 6 456788766 6789999999999999875422100 0 0 11224567999999 7799966999999
Q ss_pred HHHHHHH
Q 020747 308 VRGCIES 314 (322)
Q Consensus 308 l~~~~~~ 314 (322)
|+++++.
T Consensus 280 l~~~~~~ 286 (287)
T TIGR01214 280 LRAYLQE 286 (287)
T ss_pred HHHHHhh
Confidence 9988753
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=277.04 Aligned_cols=269 Identities=14% Similarity=0.160 Sum_probs=203.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+++|+||||||+||||++++++|+++| ++|++++|+.... ..+..... ..+++++.+|++|++.+.++++++|+|
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~--~~~~~~~~-~~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ--WEMQQKFP-APCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH--HHHHHHhC-CCcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 356899999999999999999999986 7899998865432 11111111 246889999999999999999999999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+||.... ....++.+.+++|+.|+.+++++|.+. ++++||++||..... |.
T Consensus 79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~~-------------------p~------ 132 (324)
T TIGR03589 79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAAN-------------------PI------ 132 (324)
T ss_pred EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-------------------CC------
Confidence 999996432 223445689999999999999999997 788999999962211 11
Q ss_pred hhHHHHHHHHHHHHHHHHH---HcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC---CCCC--CCCcceeHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAK---ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD---QSFA--FPYIFVEIRDVV 234 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~---~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~---~~~~--~~~~~i~~~D~a 234 (322)
++|+.||.++|.+++.++. .+|++++++|||+||||.. .....+...+..+. ++.. +.++|+|++|+|
T Consensus 133 ~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~----~~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a 208 (324)
T TIGR03589 133 NLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG----SVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGV 208 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC----CcHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHH
Confidence 5599999999999987653 4699999999999999863 22333444444453 2222 678999999999
Q ss_pred HHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCccCC-CCccccchHHH-HhhCCcc-cchhhhHH
Q 020747 235 YAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKY-QPTIKVSQERA-KSLGINF-TPWEVGVR 309 (322)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~k~-~~lg~~~-~~~~~~l~ 309 (322)
++++.++++...+..|+.++..+++.|+++.+.+..+....+.. ..+ .....+|.+|+ +.|||+| ++++++++
T Consensus 209 ~a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 209 NFVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECPHKIVGIR--PGEKLHEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred HHHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCCeeEeCCC--CCchhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence 99999998753333676667789999999999997653322221 112 23356799999 8899999 99999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=269.73 Aligned_cols=294 Identities=19% Similarity=0.224 Sum_probs=217.4
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~A 87 (322)
+|+|||||||||++++++|+++|++|++++|...... ........ ..+++.+.+|++++++++++++ ++|+|||+|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~a 78 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSP-EALKRGER-ITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFA 78 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccch-hhhhhhcc-ccceEEEECCCCCHHHHHHHHHhCCCcEEEECc
Confidence 5899999999999999999999999988866433211 11111111 1257788999999999999886 689999999
Q ss_pred cCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 88 SPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
|.... .....+.+.++.|+.++.+++++|.+. ++++||++||. .+|+... ..+++|+++..+. +.|+
T Consensus 79 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~-~~~g~~~----~~~~~e~~~~~~~------~~y~ 146 (328)
T TIGR01179 79 GLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSA-AVYGEPS----SIPISEDSPLGPI------NPYG 146 (328)
T ss_pred cccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecch-hhcCCCC----CCCccccCCCCCC------CchH
Confidence 97533 223344678899999999999999987 78899999998 5665543 4468888877654 6699
Q ss_pred HHHHHHHHHHHHHHHH-cCccEEEEcCCCccCCCCCCCC-------CccHHHHHHHHcCC--C--C------CC---CCC
Q 020747 167 LAKTLAEEAAWKFAKE-NGIDLVAIHPGTVIGPFFQPIL-------NFGAEVILNLINGD--Q--S------FA---FPY 225 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~-~~~~~~~~rp~~v~G~~~~~~~-------~~~~~~~~~~~~g~--~--~------~~---~~~ 225 (322)
.+|.++|.+++.++++ .+++++++||+.+||+...... ......+.....+. . . .+ +.+
T Consensus 147 ~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 226 (328)
T TIGR01179 147 RSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVR 226 (328)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEE
Confidence 9999999999999877 7999999999999998643211 11111122222211 1 1 11 557
Q ss_pred cceeHHHHHHHHHHhhcCC---CCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-c--cCCCCccccchHHH-Hhh
Q 020747 226 IFVEIRDVVYAHIRALEVP---KASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKL-E--EKYQPTIKVSQERA-KSL 297 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~---~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~-~--~~~~~~~~~~~~k~-~~l 297 (322)
+|||++|+++++..++... ..++.|+++ ++.+|++|+++.+++.+|.. .+... . ........+|++|+ +.|
T Consensus 227 ~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (328)
T TIGR01179 227 DYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVD-FPVELAPRRPGDPASLVADASKIRREL 305 (328)
T ss_pred eeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCC-cceEeCCCCCccccchhcchHHHHHHh
Confidence 9999999999999998752 234588876 67899999999999998743 11111 1 12233456799999 789
Q ss_pred CCcc-cc-hhhhHHHHHHHHHHc
Q 020747 298 GINF-TP-WEVGVRGCIESLMEK 318 (322)
Q Consensus 298 g~~~-~~-~~~~l~~~~~~~~~~ 318 (322)
||+| ++ ++++++++++|++++
T Consensus 306 g~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 306 GWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred CCCCCcchHHHHHHHHHHHHhcC
Confidence 9999 76 999999999998764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=238.73 Aligned_cols=299 Identities=20% Similarity=0.174 Sum_probs=240.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChh--hhhhccC-CCCcEEEEEccCCCccchHHhhC--CCCE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE--HLRELDG-ATERLHLFKANLLEEGSFDSAVD--GCDG 82 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 82 (322)
+|+.||||-||+-|++|++.|+++||+|.++.|+.+..... ++.++.. .+.+++++.+|++|...+..+++ ++|-
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 48999999999999999999999999999999986654443 2333322 24569999999999999999988 5799
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
|+|+||++.. .+.+.|....+++..||.+++++++.... .-||...||+ ..||... +.|.+|++|..|.
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStS-E~fG~v~----~~pq~E~TPFyPr---- 152 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTS-ELYGLVQ----EIPQKETTPFYPR---- 152 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccH-HhhcCcc----cCccccCCCCCCC----
Confidence 9999998755 45566689999999999999999999732 2478888887 8888776 8899999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC--CccHHHHHHHHcCC--CCC-C---CCCcceeHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL--NFGAEVILNLINGD--QSF-A---FPYIFVEIRD 232 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~--~~~~~~~~~~~~g~--~~~-~---~~~~~i~~~D 232 (322)
|||+.+|..+..+...|.+.+|+-.+.-..++.-+|.....+ ..+...+.++..|. .+. + ..|||-|..|
T Consensus 153 --SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~D 230 (345)
T COG1089 153 --SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKD 230 (345)
T ss_pred --CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHH
Confidence 889999999999999999999999999999999999866543 12344555666676 222 3 8999999999
Q ss_pred HHHHHHHhhcCCCCCccE-EEecCCCCHHHHHHHHHHhCCCC-CCC----------------------CCCccCCCCccc
Q 020747 233 VVYAHIRALEVPKASGRY-LLAGSVAQHSDILKFLREHYPTL-LRS----------------------GKLEEKYQPTIK 288 (322)
Q Consensus 233 ~a~~~~~~~~~~~~~g~~-~~~~~~~~~~e~~~~i~~~~~~~-~~~----------------------~~~~~~~~~~~~ 288 (322)
.+++++.+++.+... .| +.+|+..|++|++++..+..|.. .+. ....+.......
T Consensus 231 YVe~mwlmLQq~~Pd-dyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Ll 309 (345)
T COG1089 231 YVEAMWLMLQQEEPD-DYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLL 309 (345)
T ss_pred HHHHHHHHHccCCCC-ceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhc
Confidence 999999999997644 56 56699999999999999887631 100 000023334566
Q ss_pred cchHHH-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 289 VSQERA-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 289 ~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
-|.+|+ +.|||+| ++|+|.+++++++-...
T Consensus 310 gdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~ 341 (345)
T COG1089 310 GDPTKAKEKLGWRPEVSLEELVREMVEADLEA 341 (345)
T ss_pred CCHHHHHHHcCCccccCHHHHHHHHHHHHHHH
Confidence 789999 7899999 99999999999987653
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=243.94 Aligned_cols=262 Identities=19% Similarity=0.188 Sum_probs=213.0
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~A 87 (322)
+|||||++|++|++|++.|. .+++|++++|.. .|++|++.+.++++ .+|+|||+|
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~----------------------~Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE----------------------LDITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc----------------------ccccChHHHHHHHHhhCCCEEEECc
Confidence 49999999999999999999 779999987753 79999999999998 579999999
Q ss_pred cCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 88 SPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
++... ..+..++..+.+|..|+.|++++|++. |. ++||+||.+++.|.. +.++.|+++++|. +.||
T Consensus 59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-ga-~lVhiSTDyVFDG~~-----~~~Y~E~D~~~P~------nvYG 125 (281)
T COG1091 59 AYTAVDKAESEPELAFAVNATGAENLARAAAEV-GA-RLVHISTDYVFDGEK-----GGPYKETDTPNPL------NVYG 125 (281)
T ss_pred cccccccccCCHHHHHHhHHHHHHHHHHHHHHh-CC-eEEEeecceEecCCC-----CCCCCCCCCCCCh------hhhh
Confidence 98755 556667899999999999999999998 64 899999995544443 6789999999998 8899
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC-CCCcceeHHHHHHHHHHhhcC
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.||.++|..+++. +-+..|+|.+++||.... ++...++.....|+. ++. |..+.+++.|+|+++..++..
T Consensus 126 ~sKl~GE~~v~~~----~~~~~I~Rtswv~g~~g~---nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~ 198 (281)
T COG1091 126 RSKLAGEEAVRAA----GPRHLILRTSWVYGEYGN---NFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEK 198 (281)
T ss_pred HHHHHHHHHHHHh----CCCEEEEEeeeeecCCCC---CHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhc
Confidence 9999999999755 457899999999998752 334445555555653 344 999999999999999999998
Q ss_pred CCCCccEEEec-CCCCHHHHHHHHHHhCCCCC-----CCCC---CccCCCCccccchHHH-HhhCCcccchhhhHHHHHH
Q 020747 244 PKASGRYLLAG-SVAQHSDILKFLREHYPTLL-----RSGK---LEEKYQPTIKVSQERA-KSLGINFTPWEVGVRGCIE 313 (322)
Q Consensus 244 ~~~~g~~~~~~-~~~~~~e~~~~i~~~~~~~~-----~~~~---~~~~~~~~~~~~~~k~-~~lg~~~~~~~~~l~~~~~ 313 (322)
....|+|++++ +.+||.|+++.|.+..+... .... ...+.-.+..+|+.|+ +.+|+.+++|+++++++++
T Consensus 199 ~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~~w~~~l~~~~~ 278 (281)
T COG1091 199 EKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALLD 278 (281)
T ss_pred cccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCccHHHHHHHHHh
Confidence 77777997775 56799999999999875221 1111 0023334567999999 8899999999999999886
Q ss_pred H
Q 020747 314 S 314 (322)
Q Consensus 314 ~ 314 (322)
.
T Consensus 279 ~ 279 (281)
T COG1091 279 E 279 (281)
T ss_pred h
Confidence 4
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=261.80 Aligned_cols=272 Identities=15% Similarity=0.144 Sum_probs=201.4
Q ss_pred CcEEEEE----CCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChh------hhhhccCCCCcEEEEEccCCCccchHHhh
Q 020747 8 EKVVCVT----GASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE------HLRELDGATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 8 ~~~ilVt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
+++|||| |||||||++|+++|+++||+|++++|+....... ...++. ..+++++.+|++| +++++
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS--SAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh--hcCceEEEecHHH---HHhhh
Confidence 4789999 9999999999999999999999999986542110 001111 1347899999987 44444
Q ss_pred --CCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 78 --DGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 78 --~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
.++|+|||+++. +..++.+++++|++. ++++||++||. ++|+... ..+..|+++..|
T Consensus 127 ~~~~~d~Vi~~~~~---------------~~~~~~~ll~aa~~~-gvkr~V~~SS~-~vyg~~~----~~p~~E~~~~~p 185 (378)
T PLN00016 127 AGAGFDVVYDNNGK---------------DLDEVEPVADWAKSP-GLKQFLFCSSA-GVYKKSD----EPPHVEGDAVKP 185 (378)
T ss_pred ccCCccEEEeCCCC---------------CHHHHHHHHHHHHHc-CCCEEEEEccH-hhcCCCC----CCCCCCCCcCCC
Confidence 478999999752 145788999999987 89999999999 6676543 446677766554
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC-CC-C---CCCcceeH
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ-SF-A---FPYIFVEI 230 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~-~---~~~~~i~~ 230 (322)
. . +|..+|.+++ +.+++++++||+.+|||.... .....++.++..+.+ .+ + +.++|+|+
T Consensus 186 ~---------~-sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~--~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v 249 (378)
T PLN00016 186 K---------A-GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNK--DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHV 249 (378)
T ss_pred c---------c-hHHHHHHHHH----HcCCCeEEEeceeEECCCCCC--chHHHHHHHHHcCCceeecCCCCeeeceecH
Confidence 3 2 8999998775 458999999999999997543 122234455566652 22 2 67899999
Q ss_pred HHHHHHHHHhhcCCCC-CccEEEe-cCCCCHHHHHHHHHHhCCCCC-C---CCCCc--------cCCCCccccchHHH-H
Q 020747 231 RDVVYAHIRALEVPKA-SGRYLLA-GSVAQHSDILKFLREHYPTLL-R---SGKLE--------EKYQPTIKVSQERA-K 295 (322)
Q Consensus 231 ~D~a~~~~~~~~~~~~-~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~---~~~~~--------~~~~~~~~~~~~k~-~ 295 (322)
+|+|++++.++.++.. +++|+++ ++.+|++|+++.+.+..|... + +.... ......+.+|++|+ +
T Consensus 250 ~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~ 329 (378)
T PLN00016 250 KDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKE 329 (378)
T ss_pred HHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHH
Confidence 9999999999988643 4578777 578999999999999987421 1 11100 01123345799999 8
Q ss_pred hhCCcc-cchhhhHHHHHHHHHHcCCC
Q 020747 296 SLGINF-TPWEVGVRGCIESLMEKGFL 321 (322)
Q Consensus 296 ~lg~~~-~~~~~~l~~~~~~~~~~~~~ 321 (322)
.|||+| ++++|+|+++++|++.++.+
T Consensus 330 ~LGw~p~~~l~egl~~~~~~~~~~~~~ 356 (378)
T PLN00016 330 ELGWTPKFDLVEDLKDRYELYFGRGRD 356 (378)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 899999 89999999999999987764
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=252.68 Aligned_cols=297 Identities=25% Similarity=0.295 Sum_probs=218.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++.+++||||+||+|+||+++|++++ .+|.+++..+........... ....+++.+++|++|...+.++++++ .||
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~-~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTG-FRSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhc-ccCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 46799999999999999999999998 789999887653322111111 02467999999999999999999999 888
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+|+...+ ....+++..+++|+.||.+++++|.+. +++++||+||..++++... ...-+|+.|. | ..+.+
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~~----~~n~~E~~p~-p---~~~~d 151 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGEP----IINGDESLPY-P---LKHID 151 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCee----cccCCCCCCC-c---ccccc
Confidence 88875433 334456889999999999999999998 9999999999966665442 1223333222 2 12225
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC---C--CCCcceeHHHHHHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF---A--FPYIFVEIRDVVYAHI 238 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~---~--~~~~~i~~~D~a~~~~ 238 (322)
+|+.||+.+|+++.+.+...++..+++||..||||++....+. ...-+..|..++ . ...++++++.++.+++
T Consensus 152 ~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~---i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahi 228 (361)
T KOG1430|consen 152 PYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPK---IVEALKNGGFLFKIGDGENLNDFTYGENVAWAHI 228 (361)
T ss_pred ccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHH---HHHHHHccCceEEeeccccccceEEechhHHHHH
Confidence 6999999999999987765579999999999999998765433 233333444322 1 7789999999999999
Q ss_pred Hhhc-----CCCCCc-cEEEe-cCCCCHHHHHHHHHHhCCCC-----CCCCCCc--------------------------
Q 020747 239 RALE-----VPKASG-RYLLA-GSVAQHSDILKFLREHYPTL-----LRSGKLE-------------------------- 280 (322)
Q Consensus 239 ~~~~-----~~~~~g-~~~~~-~~~~~~~e~~~~i~~~~~~~-----~~~~~~~-------------------------- 280 (322)
.+.. .+...| .|+++ +.++...++...+.+.+|.. .+|.+..
T Consensus 229 lA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v 308 (361)
T KOG1430|consen 229 LAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRV 308 (361)
T ss_pred HHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhhe
Confidence 8763 234556 66665 67777777777887777532 1222211
Q ss_pred cCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 281 EKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 281 ~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
........++.+|+ +.|||.| .+++|++.+++.|...
T Consensus 309 ~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~ 347 (361)
T KOG1430|consen 309 ALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVAS 347 (361)
T ss_pred eeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhh
Confidence 11223566899999 8999999 9999999999987754
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=252.45 Aligned_cols=225 Identities=28% Similarity=0.378 Sum_probs=185.3
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCC--CEEEEccc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGC--DGVFHTAS 88 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~vih~A~ 88 (322)
|||||||||||++++++|+++|++|+.+.|+.......... .++.++.+|+.|.+.++++++.. |+|||+|+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH------TTEEEEESETTSHHHHHHHHHHHTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc------ceEEEEEeeccccccccccccccCceEEEEeec
Confidence 79999999999999999999999999998877554221110 16899999999999999999855 99999999
Q ss_pred Cccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 89 PVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 89 ~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
.... .........++.|+.++.+++++|++. +++++|++||. .+|+... ..+++|+++..|. ++|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~-~~y~~~~----~~~~~e~~~~~~~------~~Y~~ 142 (236)
T PF01370_consen 75 FSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSA-SVYGDPD----GEPIDEDSPINPL------SPYGA 142 (236)
T ss_dssp SSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEG-GGGTSSS----SSSBETTSGCCHS------SHHHH
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc----ccccccccccccc------ccccc
Confidence 7521 112445688999999999999999998 77999999997 7777664 6788999888666 77999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCC--CCCCCccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHHHHh
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF--QPILNFGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~--~~~~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~~~~ 240 (322)
+|..+|++++.+.++++++++++||+++|||.. .........++.++..|++ ++. +.++|+|++|+|++++.+
T Consensus 143 ~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 222 (236)
T PF01370_consen 143 SKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAA 222 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHH
Confidence 999999999999999999999999999999991 1112344667777888772 222 889999999999999999
Q ss_pred hcCCC-CCccEEEe
Q 020747 241 LEVPK-ASGRYLLA 253 (322)
Q Consensus 241 ~~~~~-~~g~~~~~ 253 (322)
++++. .+++||++
T Consensus 223 ~~~~~~~~~~yNig 236 (236)
T PF01370_consen 223 LENPKAAGGIYNIG 236 (236)
T ss_dssp HHHSCTTTEEEEES
T ss_pred HhCCCCCCCEEEeC
Confidence 99987 66788863
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=261.57 Aligned_cols=265 Identities=20% Similarity=0.222 Sum_probs=188.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
||||||||+|+||++|+++|.++|++|+++.|. ..|++|.+++.++++ .+|+|||+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~----------------------~~dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS----------------------DLDLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT----------------------CS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch----------------------hcCCCCHHHHHHHHHHhCCCeEecc
Confidence 589999999999999999999999999998664 368899999998887 58999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... .++.++...+++|+.++.+++++|.+. + .++||+||. .||+... ..+++|+++++|. +.|
T Consensus 59 aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~-~~li~~STd-~VFdG~~----~~~y~E~d~~~P~------~~Y 125 (286)
T PF04321_consen 59 AAYTNVDACEKNPEEAYAINVDATKNLAEACKER-G-ARLIHISTD-YVFDGDK----GGPYTEDDPPNPL------NVY 125 (286)
T ss_dssp -----HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEG-GGS-SST----SSSB-TTS----S------SHH
T ss_pred ceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-C-CcEEEeecc-EEEcCCc----ccccccCCCCCCC------CHH
Confidence 998643 445667899999999999999999997 6 489999999 5554433 6779999998887 789
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-CCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
|.+|+++|+.+++.+ -+..|+|++.+||+... ++...++..+..++ .++. +.++++|++|+|+++..+++
T Consensus 126 G~~K~~~E~~v~~~~----~~~~IlR~~~~~g~~~~---~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~ 198 (286)
T PF04321_consen 126 GRSKLEGEQAVRAAC----PNALILRTSWVYGPSGR---NFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELIE 198 (286)
T ss_dssp HHHHHHHHHHHHHH-----SSEEEEEE-SEESSSSS---SHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCEEEEecceecccCCC---chhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHHH
Confidence 999999999998643 38899999999999322 33333444555555 3344 88899999999999999998
Q ss_pred CCCC----CccEEEe-cCCCCHHHHHHHHHHhCCCCC-----CCCCCc---cCCCCccccchHHH-HhhCCcccchhhhH
Q 020747 243 VPKA----SGRYLLA-GSVAQHSDILKFLREHYPTLL-----RSGKLE---EKYQPTIKVSQERA-KSLGINFTPWEVGV 308 (322)
Q Consensus 243 ~~~~----~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~~---~~~~~~~~~~~~k~-~~lg~~~~~~~~~l 308 (322)
+... .|+|+++ ++.+|..|+++.+.+.++... ++.... .....+..+|++|+ +.+|+++++|+++|
T Consensus 199 ~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~~~~~~l 278 (286)
T PF04321_consen 199 KNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPPPWREGL 278 (286)
T ss_dssp HHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS---BHHHHH
T ss_pred hcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCcCHHHHH
Confidence 7543 5899766 578999999999999986332 111111 23345778999999 77899999999999
Q ss_pred HHHHHHH
Q 020747 309 RGCIESL 315 (322)
Q Consensus 309 ~~~~~~~ 315 (322)
+++++.+
T Consensus 279 ~~~~~~~ 285 (286)
T PF04321_consen 279 EELVKQY 285 (286)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999865
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=268.23 Aligned_cols=243 Identities=21% Similarity=0.149 Sum_probs=187.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+|||||||||++++++|+++|++|++++|+..... ..+++++.+|++|.+++.++++++|+|||+|+
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~----------~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa 70 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW----------PSSADFIAADIRDATAVESAMTGADVVAHCAW 70 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc----------ccCceEEEeeCCCHHHHHHHHhCCCEEEECCC
Confidence 47999999999999999999999999999998743210 12478899999999999999999999999997
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.... .+++|+.++.+++++|++. ++++||++||..
T Consensus 71 ~~~~--------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~------------------------------------ 105 (854)
T PRK05865 71 VRGR--------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH------------------------------------ 105 (854)
T ss_pred cccc--------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH------------------------------------
Confidence 5321 5689999999999999997 889999999861
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-----CCCcceeHHHHHHHHHHhhcC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-----FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~i~~~D~a~~~~~~~~~ 243 (322)
|.++|+++. +++++++++||+++|||... .++..+.. .++++ ..++|+|++|+|++++.+++.
T Consensus 106 K~aaE~ll~----~~gl~~vILRp~~VYGP~~~-------~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~ 173 (854)
T PRK05865 106 QPRVEQMLA----DCGLEWVAVRCALIFGRNVD-------NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLD 173 (854)
T ss_pred HHHHHHHHH----HcCCCEEEEEeceEeCCChH-------HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhC
Confidence 667787764 46999999999999999621 12333222 12221 456999999999999999865
Q ss_pred CC-CCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC--c-----cCCCCccccchHHH-HhhCCcc-cchhhhHHHHH
Q 020747 244 PK-ASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKL--E-----EKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCI 312 (322)
Q Consensus 244 ~~-~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~--~-----~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~ 312 (322)
+. .++.||++ ++.+|++|+++.+.+.....+.+... . ........+|++|+ +.|||+| ++++++|++++
T Consensus 174 ~~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti 253 (854)
T PRK05865 174 TVIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFT 253 (854)
T ss_pred CCcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 43 45688766 67899999999998753211111100 0 11122446899999 8899999 99999999999
Q ss_pred HHHHHc
Q 020747 313 ESLMEK 318 (322)
Q Consensus 313 ~~~~~~ 318 (322)
+|++.+
T Consensus 254 ~~~r~r 259 (854)
T PRK05865 254 LAVRGR 259 (854)
T ss_pred HHHHhh
Confidence 999863
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=246.93 Aligned_cols=261 Identities=15% Similarity=0.181 Sum_probs=192.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+|||||||||++++++|+++||+|++++|+.++.. .+. ..+++++.+|++|++++.++++++|+|||+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~--~l~-----~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS--FLK-----EWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh--hHh-----hcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 47999999999999999999999999999999864321 111 13578999999999999999999999999976
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.. .......+++|+.++.+++++|++. ++++||++||..+ ..... ++|..+
T Consensus 74 ~~----~~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~~~-~~~~~-----------------------~~~~~~ 124 (317)
T CHL00194 74 SR----PSDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSILNA-EQYPY-----------------------IPLMKL 124 (317)
T ss_pred CC----CCCccchhhhhHHHHHHHHHHHHHc-CCCEEEEeccccc-cccCC-----------------------ChHHHH
Confidence 32 1233467889999999999999998 8999999999622 11110 348999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC--C--CCCcceeHHHHHHHHHHhhcCC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF--A--FPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~--~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
|..+|++++ +.+++++++||+.+|+..... .......+.+.+ + +.++|+|++|+|+++..+++++
T Consensus 125 K~~~e~~l~----~~~l~~tilRp~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~ 193 (317)
T CHL00194 125 KSDIEQKLK----KSGIPYTIFRLAGFFQGLISQ-------YAIPILEKQPIWITNESTPISYIDTQDAAKFCLKSLSLP 193 (317)
T ss_pred HHHHHHHHH----HcCCCeEEEeecHHhhhhhhh-------hhhhhccCCceEecCCCCccCccCHHHHHHHHHHHhcCc
Confidence 999999875 469999999999888642111 111222233221 1 6789999999999999999876
Q ss_pred CC-CccEEEe-cCCCCHHHHHHHHHHhCCCC----CCCCCCc-------------------------cCCCCccccchHH
Q 020747 245 KA-SGRYLLA-GSVAQHSDILKFLREHYPTL----LRSGKLE-------------------------EKYQPTIKVSQER 293 (322)
Q Consensus 245 ~~-~g~~~~~-~~~~~~~e~~~~i~~~~~~~----~~~~~~~-------------------------~~~~~~~~~~~~k 293 (322)
.. +++|+++ ++.+|++|+++.+.+..|.. ++|.+.. ........++.++
T Consensus 194 ~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (317)
T CHL00194 194 ETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAE 273 (317)
T ss_pred cccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHH
Confidence 43 4588776 57899999999999988642 2222111 0111233356778
Q ss_pred H-HhhCCcc---cchhhhHHHHHHHHH
Q 020747 294 A-KSLGINF---TPWEVGVRGCIESLM 316 (322)
Q Consensus 294 ~-~~lg~~~---~~~~~~l~~~~~~~~ 316 (322)
+ +.||+.| .++++++++.+....
T Consensus 274 ~~~~~g~~p~~~~~~~~~~~~~~~~~~ 300 (317)
T CHL00194 274 LYKIFKIDPNELISLEDYFQEYFERIL 300 (317)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 8 8899986 678988888876544
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=223.13 Aligned_cols=282 Identities=21% Similarity=0.196 Sum_probs=219.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
++|||||++|.+|++|.+.+.+.|. +-.++.-+ -.+|+++.++.+++|+ .+.+||
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s---------------------kd~DLt~~a~t~~lF~~ekPthVI 60 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS---------------------KDADLTNLADTRALFESEKPTHVI 60 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc---------------------ccccccchHHHHHHHhccCCceee
Confidence 7999999999999999999999886 22222111 1379999999999998 579999
Q ss_pred EcccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 85 HTASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 85 h~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
|+||.++. .....+.+++..|+.-.-|++..|.+. |++++++..|. .+|+... ..||+|+...+.++..++
T Consensus 61 hlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~-gv~K~vsclSt-CIfPdkt----~yPIdEtmvh~gpphpsN- 133 (315)
T KOG1431|consen 61 HLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEH-GVKKVVSCLST-CIFPDKT----SYPIDETMVHNGPPHPSN- 133 (315)
T ss_pred ehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHh-chhhhhhhcce-eecCCCC----CCCCCHHHhccCCCCCCc-
Confidence 99998755 234445789999999999999999998 99999999888 7888776 789999876665544443
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC---ccHHHHHHHH----cCC---CCCC---CCCccee
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN---FGAEVILNLI----NGD---QSFA---FPYIFVE 229 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~---~~~~~~~~~~----~g~---~~~~---~~~~~i~ 229 (322)
-.|+.+|++++-.-+.|..++|-..+.+-|.++|||.+..... ..+.++.++. .|. .+|+ +.|+|+|
T Consensus 134 ~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiy 213 (315)
T KOG1431|consen 134 FGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIY 213 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhh
Confidence 2499999999988899999999999999999999998754321 2356666532 232 3555 8999999
Q ss_pred HHHHHHHHHHhhcCCCCCc-cEEEecC--CCCHHHHHHHHHHhCCCCCCCCCCc--cCCCCccccchHHHHhhCCcc--c
Q 020747 230 IRDVVYAHIRALEVPKASG-RYLLAGS--VAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSLGINF--T 302 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g-~~~~~~~--~~~~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~lg~~~--~ 302 (322)
++|+|+++++++++=..-. +++.+++ .+|++|+++++.++++-.---.+.. ...+..-..|++|++.|+|.| +
T Consensus 214 s~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~sl~pd~~ft 293 (315)
T KOG1431|consen 214 SDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRSLLPDFKFT 293 (315)
T ss_pred HhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHHhCCCcccC
Confidence 9999999999998743223 4444465 8999999999999986321111111 334556679999999999988 6
Q ss_pred chhhhHHHHHHHHHHc
Q 020747 303 PWEVGVRGCIESLMEK 318 (322)
Q Consensus 303 ~~~~~l~~~~~~~~~~ 318 (322)
+|+++|.++++||.++
T Consensus 294 ~l~~ai~~t~~Wy~~N 309 (315)
T KOG1431|consen 294 PLEQAISETVQWYLDN 309 (315)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 6999999999999864
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=242.76 Aligned_cols=269 Identities=19% Similarity=0.184 Sum_probs=188.2
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcccCc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASPV 90 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~ 90 (322)
|||||||||||++++++|+++|++|++++|+...... ... .. ..|+.. ..+...+.++|+|||+||..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~-------~~--~~~~~~-~~~~~~~~~~D~Vvh~a~~~ 68 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGAN--TKW-------EG--YKPWAP-LAESEALEGADAVINLAGEP 68 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCc--ccc-------ee--eecccc-cchhhhcCCCCEEEECCCCC
Confidence 6899999999999999999999999999998755321 100 01 112222 44556778899999999964
Q ss_pred cc---CCCCCcchhhhHHHHHHHHHHHHHhhcCCcc--EEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 91 IF---LSDNPQADIVDPAVMGTLNVLRSCAKVHSIK--RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 91 ~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
.. ........+++.|+.++.+++++|++. +++ .||+.||. .+|+... ..+++|++++.+. +.|
T Consensus 69 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~-~~yg~~~----~~~~~E~~~~~~~------~~~ 136 (292)
T TIGR01777 69 IADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAV-GYYGTSE----DRVFTEEDSPAGD------DFL 136 (292)
T ss_pred cccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeE-EEeCCCC----CCCcCcccCCCCC------ChH
Confidence 32 112234567889999999999999997 653 46656665 5666543 5578888754443 346
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---CCCcceeHHHHHHHHHHhh
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~~~i~~~D~a~~~~~~~ 241 (322)
+..|...|..+... ++.+++++++||+.+|||.... ...+........ ..++ +.++|+|++|+|+++..++
T Consensus 137 ~~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l 211 (292)
T TIGR01777 137 AELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGGA----LAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFAL 211 (292)
T ss_pred HHHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcch----hHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHHh
Confidence 77777777776544 3468999999999999996321 111111111111 1122 7899999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC---CCCCCCc--------cCCCCccccchHHHHhhCCcc-c-chhhh
Q 020747 242 EVPKASGRYLLA-GSVAQHSDILKFLREHYPTL---LRSGKLE--------EKYQPTIKVSQERAKSLGINF-T-PWEVG 307 (322)
Q Consensus 242 ~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~---~~~~~~~--------~~~~~~~~~~~~k~~~lg~~~-~-~~~~~ 307 (322)
+++...|.|+++ ++.+|++|+++.|++.++.. ++|.+.. .....+..++++|++.+||+| + +++|+
T Consensus 212 ~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 291 (292)
T TIGR01777 212 ENASISGPVNATAPEPVRNKEFAKALARALHRPAFFPVPAFVLRALLGEMADLLLKGQRVLPEKLLEAGFQFQYPDLDEA 291 (292)
T ss_pred cCcccCCceEecCCCccCHHHHHHHHHHHhCCCCcCcCCHHHHHHHhchhhHHHhCCcccccHHHHhcCCeeeCcChhhc
Confidence 887667788776 68899999999999998632 2333322 111246678889997799999 6 58876
Q ss_pred H
Q 020747 308 V 308 (322)
Q Consensus 308 l 308 (322)
+
T Consensus 292 ~ 292 (292)
T TIGR01777 292 L 292 (292)
T ss_pred C
Confidence 4
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=256.31 Aligned_cols=266 Identities=18% Similarity=0.201 Sum_probs=186.5
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCC---CeEEEEEeCCCCcCh-hhhh-hcc-------------CC-----CCcEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRG---YTVKATVRDPNSPKT-EHLR-ELD-------------GA-----TERLH 61 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~-~~~~-~~~-------------~~-----~~~~~ 61 (322)
..++|+|||||||||||++|+++|++.+ .+|+++.|....... +.+. ++. .. ..+++
T Consensus 8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~ 87 (491)
T PLN02996 8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT 87 (491)
T ss_pred HhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence 4568999999999999999999999865 368999997654332 1111 110 00 15789
Q ss_pred EEEccCCCc-------cchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhh
Q 020747 62 LFKANLLEE-------GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAM 134 (322)
Q Consensus 62 ~~~~Dl~~~-------~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~ 134 (322)
++.||++++ +.++.+++++|+|||+||.+.. ..++...+++|+.||.+++++|++..++++|||+||. .+
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~-~v 164 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF--DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTA-YV 164 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC--cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeee-EE
Confidence 999999854 3466788899999999997653 3456788999999999999999986468899999998 56
Q ss_pred ccCCCCCCCCccccCCC-C-----C-----------------------------------CcccccccchhHHHHHHHHH
Q 020747 135 LLNETPMTPDVVIDETW-F-----S-----------------------------------NPVLCKENKEWYSLAKTLAE 173 (322)
Q Consensus 135 ~~~~~~~~~~~~~~E~~-~-----~-----------------------------------~~~~~~~~~~~Y~~sK~~~e 173 (322)
||......++.++++.. + . .+.......+.|+.||+++|
T Consensus 165 yG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE 244 (491)
T PLN02996 165 CGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGE 244 (491)
T ss_pred ecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHH
Confidence 65432110111222110 0 0 00001112366999999999
Q ss_pred HHHHHHHHHcCccEEEEcCCCccCCCCCCCCCcc------HHHHHHHHcCC-C-CCC---CCCcceeHHHHHHHHHHhhc
Q 020747 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG------AEVILNLINGD-Q-SFA---FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 174 ~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~------~~~~~~~~~g~-~-~~~---~~~~~i~~~D~a~~~~~~~~ 242 (322)
+++..++. +++++++||++||||...+..... ..++.....|. . .++ +.+|++|++|+|++++.++.
T Consensus 245 ~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~ 322 (491)
T PLN02996 245 MLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMA 322 (491)
T ss_pred HHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHH
Confidence 99988753 899999999999999866532211 12233334454 2 222 78999999999999999987
Q ss_pred CC--C--CCccEEEe-c--CCCCHHHHHHHHHHhCCCCCC
Q 020747 243 VP--K--ASGRYLLA-G--SVAQHSDILKFLREHYPTLLR 275 (322)
Q Consensus 243 ~~--~--~~g~~~~~-~--~~~~~~e~~~~i~~~~~~~~~ 275 (322)
.. . .+.+||++ + .++|+.|+++.+.+..+..|.
T Consensus 323 ~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~ 362 (491)
T PLN02996 323 AHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPW 362 (491)
T ss_pred HhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCC
Confidence 52 1 23478776 5 589999999999998765553
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=263.07 Aligned_cols=293 Identities=20% Similarity=0.152 Sum_probs=205.9
Q ss_pred cEEEEECCcchhHHHHHHHHH--HCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCcc------chHHhhCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLL--QRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEG------SFDSAVDGC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~------~~~~~~~~~ 80 (322)
|+|||||||||||++|+++|+ ++|++|++++|+........+.... ...+++++.+|++|++ .++++ +++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~-~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~ 78 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYW-GADRVVPLVGDLTEPGLGLSEADIAEL-GDI 78 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhc-CCCcEEEEecccCCccCCcCHHHHHHh-cCC
Confidence 479999999999999999999 5799999999964322111111100 1256899999999853 34555 899
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
|+|||+||..... .......++|+.++.+++++|.+. ++++|||+||. .+|+.. ..+.+|+....+. .
T Consensus 79 D~Vih~Aa~~~~~--~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~-~v~g~~-----~~~~~e~~~~~~~---~ 146 (657)
T PRK07201 79 DHVVHLAAIYDLT--ADEEAQRAANVDGTRNVVELAERL-QAATFHHVSSI-AVAGDY-----EGVFREDDFDEGQ---G 146 (657)
T ss_pred CEEEECceeecCC--CCHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEecc-ccccCc-----cCccccccchhhc---C
Confidence 9999999975432 334578899999999999999997 78999999998 566543 2344555432221 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc------cHHHHHHHHcCC---CCCC---CCCcce
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF------GAEVILNLINGD---QSFA---FPYIFV 228 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~------~~~~~~~~~~g~---~~~~---~~~~~i 228 (322)
+.+.|+.+|.++|+++++ ..+++++++||+.|||+........ ....+..+.... +... ...+++
T Consensus 147 ~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (657)
T PRK07201 147 LPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIV 223 (657)
T ss_pred CCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeee
Confidence 125699999999999864 3589999999999999865432111 111222221111 1111 567999
Q ss_pred eHHHHHHHHHHhhcCCCCCc-cEEEe-cCCCCHHHHHHHHHHhCCCCC-------CCCCCc-------------------
Q 020747 229 EIRDVVYAHIRALEVPKASG-RYLLA-GSVAQHSDILKFLREHYPTLL-------RSGKLE------------------- 280 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g-~~~~~-~~~~~~~e~~~~i~~~~~~~~-------~~~~~~------------------- 280 (322)
|++|+++++..+++.+...| .|+++ +++++++|+++.+.+.++... +|.+..
T Consensus 224 ~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 303 (657)
T PRK07201 224 PVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVAT 303 (657)
T ss_pred eHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHH
Confidence 99999999999988655444 88776 589999999999999886432 232211
Q ss_pred ---------cCCCCccccchHHH-Hhh---CCcccchhhhHHHHHHHHHHc
Q 020747 281 ---------EKYQPTIKVSQERA-KSL---GINFTPWEVGVRGCIESLMEK 318 (322)
Q Consensus 281 ---------~~~~~~~~~~~~k~-~~l---g~~~~~~~~~l~~~~~~~~~~ 318 (322)
........+|++++ +.| |+.++.+++.+...++|+.++
T Consensus 304 ~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~~~~~ 354 (657)
T PRK07201 304 QLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYAPRLWDYWERH 354 (657)
T ss_pred hcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChHHHHHHHHHHHHhc
Confidence 11223457888998 767 667788999999999887653
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=231.26 Aligned_cols=268 Identities=14% Similarity=0.177 Sum_probs=188.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
+.|+||||||+||||++|+++|+++|++|+... +|++|.+.+...++ ++|+||
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~-------------------------~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS-------------------------GRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec-------------------------CccCCHHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999999986432 22334444555554 689999
Q ss_pred EcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCC--CCccccCCCCCCcccc
Q 020747 85 HTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMT--PDVVIDETWFSNPVLC 158 (322)
Q Consensus 85 h~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~--~~~~~~E~~~~~~~~~ 158 (322)
|+||.... ....++.+.+++|+.++.+++++|++. ++++ +++||. .+|+.....+ ...+++|++++.+.
T Consensus 63 H~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~~-v~~sS~-~vy~~~~~~p~~~~~~~~Ee~~p~~~-- 137 (298)
T PLN02778 63 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLVL-TNYATG-CIFEYDDAHPLGSGIGFKEEDTPNFT-- 137 (298)
T ss_pred ECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCE-EEEecc-eEeCCCCCCCcccCCCCCcCCCCCCC--
Confidence 99997642 133456789999999999999999998 7765 556665 4544321100 12347777654432
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHH
Q 020747 159 KENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHI 238 (322)
Q Consensus 159 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~ 238 (322)
.+.|+.||.++|.++..++ +..++|++..+|+... ....++.+++.+..++....+|+|++|++++++
T Consensus 138 ---~s~Yg~sK~~~E~~~~~y~-----~~~~lr~~~~~~~~~~----~~~~fi~~~~~~~~~~~~~~s~~yv~D~v~al~ 205 (298)
T PLN02778 138 ---GSFYSKTKAMVEELLKNYE-----NVCTLRVRMPISSDLS----NPRNFITKITRYEKVVNIPNSMTILDELLPISI 205 (298)
T ss_pred ---CCchHHHHHHHHHHHHHhh-----ccEEeeecccCCcccc----cHHHHHHHHHcCCCeeEcCCCCEEHHHHHHHHH
Confidence 1569999999999998775 3567888877776422 123356667766543333357999999999999
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC------CCCCCC--ccCCCCccccchHHH-HhhCCcccchhhhH
Q 020747 239 RALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL------LRSGKL--EEKYQPTIKVSQERA-KSLGINFTPWEVGV 308 (322)
Q Consensus 239 ~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~------~~~~~~--~~~~~~~~~~~~~k~-~~lg~~~~~~~~~l 308 (322)
.+++.+. +|.||++ ++.+|++|+++.+++.++.. .++... ......+..+|++|+ +.++-.++..++++
T Consensus 206 ~~l~~~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~~~~~~~ 284 (298)
T PLN02778 206 EMAKRNL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLPIKESLI 284 (298)
T ss_pred HHHhCCC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccchHHHHH
Confidence 9997654 4788775 68999999999999998741 111000 011122347999999 77787777788888
Q ss_pred HHHHHHHHH
Q 020747 309 RGCIESLME 317 (322)
Q Consensus 309 ~~~~~~~~~ 317 (322)
+...+-.+.
T Consensus 285 ~~~~~~~~~ 293 (298)
T PLN02778 285 KYVFEPNKK 293 (298)
T ss_pred HHHHHHHHh
Confidence 888877643
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=211.98 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=190.5
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-CCCEEEEcccC
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-GCDGVFHTASP 89 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vih~A~~ 89 (322)
|+|||||||||++|+..|.+.||+|++++|+++...... ...+ ...+.+..... ++|+|||+||.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~-------~~~v-------~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL-------HPNV-------TLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc-------Cccc-------cccchhhhcccCCCCEEEECCCC
Confidence 689999999999999999999999999999987654311 1111 12234444444 79999999996
Q ss_pred cc--c-CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 90 VI--F-LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 90 ~~--~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
.. . +....++.+.+..+..|..|.++..... +++.+|.-|.+ ++||... +..++|++++...++.+.+
T Consensus 67 ~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAv-GyYG~~~----~~~~tE~~~~g~~Fla~lc--- 138 (297)
T COG1090 67 PIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAV-GYYGHSG----DRVVTEESPPGDDFLAQLC--- 138 (297)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceE-EEecCCC----ceeeecCCCCCCChHHHHH---
Confidence 42 2 5566778899999999999999998542 44555555555 8998876 8899999776665332111
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC-C-CCCcceeHHHHHHHHHHhhcC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF-A-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
..=|+...+ ++..|.+++.+|.|.|.++......... ...+...|.++- + |+++|||++|+++++.+++++
T Consensus 139 ----~~WE~~a~~-a~~~gtRvvllRtGvVLs~~GGaL~~m~--~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~ 211 (297)
T COG1090 139 ----QDWEEEALQ-AQQLGTRVVLLRTGVVLSPDGGALGKML--PLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLEN 211 (297)
T ss_pred ----HHHHHHHhh-hhhcCceEEEEEEEEEecCCCcchhhhc--chhhhccCCccCCCCceeeeeeHHHHHHHHHHHHhC
Confidence 011222211 1234999999999999998644321110 112222232222 2 999999999999999999999
Q ss_pred CCCCccEEEe-cCCCCHHHHHHHHHHhCCC---CCCCCCCc--------cCCCCccccchHHHHhhCCcc--cchhhhHH
Q 020747 244 PKASGRYLLA-GSVAQHSDILKFLREHYPT---LLRSGKLE--------EKYQPTIKVSQERAKSLGINF--TPWEVGVR 309 (322)
Q Consensus 244 ~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~---~~~~~~~~--------~~~~~~~~~~~~k~~~lg~~~--~~~~~~l~ 309 (322)
....|.||++ +.+++..++.+.+.+.+.. .++|.... .........=.+|+...||++ .+++++++
T Consensus 212 ~~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~y~dl~~AL~ 291 (297)
T COG1090 212 EQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQYPDLEEALA 291 (297)
T ss_pred cCCCCcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeeecCCHHHHHH
Confidence 8889988766 7999999999999999852 24554433 112223344456666679887 78999999
Q ss_pred HHHH
Q 020747 310 GCIE 313 (322)
Q Consensus 310 ~~~~ 313 (322)
+.+.
T Consensus 292 ~il~ 295 (297)
T COG1090 292 DILK 295 (297)
T ss_pred HHHh
Confidence 8764
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=228.77 Aligned_cols=248 Identities=21% Similarity=0.294 Sum_probs=175.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcCh-hhhhh----cc----CCC-CcEEEEEccCCCc------c
Q 020747 10 VVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKT-EHLRE----LD----GAT-ERLHLFKANLLEE------G 71 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~----~~----~~~-~~~~~~~~Dl~~~------~ 71 (322)
+|+|||||||||++|+++|+++| ++|++++|+.+.... +.+.+ .. ... .+++++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999999 679999997653211 11111 00 001 4789999999875 3
Q ss_pred chHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 72 SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 72 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
.+..+.+++|+|||+|+.... ..+.....+.|+.++.+++++|.+. ++++||++||. ++++... ..+..|+.
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~--~~~~~~~~~~nv~g~~~ll~~a~~~-~~~~~v~iSS~-~v~~~~~----~~~~~~~~ 152 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW--VYPYSELRAANVLGTREVLRLAASG-RAKPLHYVSTI-SVLAAID----LSTVTEDD 152 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc--CCcHHHHhhhhhHHHHHHHHHHhhC-CCceEEEEccc-cccCCcC----CCCccccc
Confidence 466677889999999997543 2344577889999999999999987 78889999999 4544322 12233433
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc---cHHHHHHHHcCCCCCC----CC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF---GAEVILNLINGDQSFA----FP 224 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~---~~~~~~~~~~g~~~~~----~~ 224 (322)
+..+.. ....+.|+.+|.++|.+++.+.+. |++++++|||.++|+........ ...++...... ..++ ..
T Consensus 153 ~~~~~~-~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~-~~~p~~~~~~ 229 (367)
T TIGR01746 153 AIVTPP-PGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLAL-GAYPDSPELT 229 (367)
T ss_pred cccccc-cccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHh-CCCCCCCccc
Confidence 322111 111256999999999999887655 99999999999999854332221 11122221111 2233 36
Q ss_pred CcceeHHHHHHHHHHhhcCCCC---CccEEEe-cCCCCHHHHHHHHHH
Q 020747 225 YIFVEIRDVVYAHIRALEVPKA---SGRYLLA-GSVAQHSDILKFLRE 268 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~---~g~~~~~-~~~~~~~e~~~~i~~ 268 (322)
.+++|++|++++++.++..+.. +++|+++ +++++++|+++.+.+
T Consensus 230 ~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~ 277 (367)
T TIGR01746 230 EDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER 277 (367)
T ss_pred cCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH
Confidence 7899999999999999877653 4578776 588999999999998
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=231.06 Aligned_cols=236 Identities=22% Similarity=0.241 Sum_probs=196.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhCC--
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVDG-- 79 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~-- 79 (322)
+.++|+|+||||+|-||+++|+++++.+ .+++.++|++..... ...++... ..++.++.||+.|.+.++.++++
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~-i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYL-IDMELREKFPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHH-HHHHHHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence 4568999999999999999999999987 568888888755433 22222221 46788999999999999999997
Q ss_pred CCEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020747 80 CDGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC 158 (322)
Q Consensus 80 ~d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (322)
+|+|||+||+-+. ..+.++.+.+++|+.||.|++++|.+. ++++||.+||..++++.
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~Pt--------------------- 383 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPT--------------------- 383 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCc---------------------
Confidence 9999999997544 667888999999999999999999998 99999999999888643
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC--CC--CCCcceeHH
Q 020747 159 KENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS--FA--FPYIFVEIR 231 (322)
Q Consensus 159 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~--~~--~~~~~i~~~ 231 (322)
|.||.||+.+|.++.+++... +.+++++|+|||.|.. ++..+-+..++.+|+++ .. -.|=|+.+.
T Consensus 384 ----NvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr----GSViPlFk~QI~~GgplTvTdp~mtRyfMTI~ 455 (588)
T COG1086 384 ----NVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR----GSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIP 455 (588)
T ss_pred ----hHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC----CCCHHHHHHHHHcCCCccccCCCceeEEEEHH
Confidence 669999999999999988744 3899999999999976 34455566667777733 22 557799999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 020747 232 DVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYP 271 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~ 271 (322)
|.++.++.+......+.+|+.. |++++..|+++.+.+..|
T Consensus 456 EAv~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 456 EAVQLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 9999999999887655688888 899999999999999986
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=226.77 Aligned_cols=230 Identities=23% Similarity=0.242 Sum_probs=172.5
Q ss_pred EEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhcc--CCCCcE----EEEEccCCCccchHHhhC--CCC
Q 020747 11 VCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELD--GATERL----HLFKANLLEEGSFDSAVD--GCD 81 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~--~~~~~~----~~~~~Dl~~~~~~~~~~~--~~d 81 (322)
||||||+|.||++||++|++.+ .++++++|++..... ..+++. ..+.++ ..+.+|++|.+.+..+++ ++|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~-l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYE-LERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHH-HHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHH-HHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 7999999999999999999988 579999998755432 222221 112223 456899999999999999 899
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
+|||+||+-.. ..+.++.+..++|+.||.|++++|.+. ++++||++||..++.+.
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~Pt----------------------- 135 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNPT----------------------- 135 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS-------------------------
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCCC-----------------------
Confidence 99999997543 446677899999999999999999998 99999999999776422
Q ss_pred cchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC--C--CCCcceeHHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF--A--FPYIFVEIRDV 233 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~--~--~~~~~i~~~D~ 233 (322)
+.||.||+.+|.++..++... +.+++++|+|+|.|.. ++..+.+..++.+|+|+. . -.|=|+.++|+
T Consensus 136 --nvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~----GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EA 209 (293)
T PF02719_consen 136 --NVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR----GSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEA 209 (293)
T ss_dssp --SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT----TSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHH
T ss_pred --cHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC----CcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHH
Confidence 669999999999999888765 6899999999999965 355667777788887442 2 55779999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC
Q 020747 234 VYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYP 271 (322)
Q Consensus 234 a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~ 271 (322)
++.++.++.....+.+|+.. |+++++.|+++.+.+..|
T Consensus 210 v~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g 248 (293)
T PF02719_consen 210 VQLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSG 248 (293)
T ss_dssp HHHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcc
Confidence 99999999876655588877 799999999999999987
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=225.42 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=171.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChh-hhhhccCCCCcEEEEEccCCCccchHHhhC----CC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE-HLRELDGATERLHLFKANLLEEGSFDSAVD----GC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~ 80 (322)
.++++|+|||||||||++++++|+++|++|++++|+.+..... ..........+++++++|++|++.++++++ ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999999999986543210 011111112468899999999999999887 58
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
|+||||++.... .....+++|+.++.++++++++. ++++||++||. .++...
T Consensus 138 D~Vi~~aa~~~~----~~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~-~v~~p~---------------------- 189 (390)
T PLN02657 138 DVVVSCLASRTG----GVKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAI-CVQKPL---------------------- 189 (390)
T ss_pred cEEEECCccCCC----CCccchhhHHHHHHHHHHHHHHc-CCCEEEEEeec-cccCcc----------------------
Confidence 999999874321 12345788999999999999987 89999999998 443211
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC---CC-CcceeHHHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA---FP-YIFVEIRDVV 234 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~---~~-~~~i~~~D~a 234 (322)
..|..+|..+|+.+.. ...+++++++||+.+||+.. ..+..+..|.+ +++ .. .++||++|+|
T Consensus 190 --~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~~--------~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA 257 (390)
T PLN02657 190 --LEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSLG--------GQVEIVKDGGPYVMFGDGKLCACKPISEADLA 257 (390)
T ss_pred --hHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhcccH--------HHHHhhccCCceEEecCCcccccCceeHHHHH
Confidence 3489999999998865 34699999999999997531 12334445553 233 22 3579999999
Q ss_pred HHHHHhhcCCCC-CccEEEec--CCCCHHHHHHHHHHhCCC
Q 020747 235 YAHIRALEVPKA-SGRYLLAG--SVAQHSDILKFLREHYPT 272 (322)
Q Consensus 235 ~~~~~~~~~~~~-~g~~~~~~--~~~~~~e~~~~i~~~~~~ 272 (322)
++++.++.++.. +.+|++++ +.+|++|+++++.+.+|.
T Consensus 258 ~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~ 298 (390)
T PLN02657 258 SFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGK 298 (390)
T ss_pred HHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCC
Confidence 999999976543 45787764 489999999999999874
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=197.22 Aligned_cols=291 Identities=16% Similarity=0.137 Sum_probs=223.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-----CCCcEEEEEccCCCccchHHhhC--CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATERLHLFKANLLEEGSFDSAVD--GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~--~~d 81 (322)
|..||||-||+-|+.|++.|+++||+|.++.|+.+.......+.+.. ++.....+.+|++|...+.+++. .++
T Consensus 29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikPt 108 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKPT 108 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCch
Confidence 57899999999999999999999999999999887765544444332 24568899999999999999998 569
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI---KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
-|+|+|+..+. .+.+-++..-++...||++++++.+.+ +. -||-..||. ..||... +.|.+|.+|..|.
T Consensus 109 EiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c-~l~~~VrfYQAstS-ElyGkv~----e~PQsE~TPFyPR- 181 (376)
T KOG1372|consen 109 EVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRAC-RLTEKVRFYQASTS-ELYGKVQ----EIPQSETTPFYPR- 181 (376)
T ss_pred hhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhc-CcccceeEEecccH-hhccccc----CCCcccCCCCCCC-
Confidence 99999998655 334445678889999999999998876 32 367777877 8999876 7899999999998
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHH----HHHHcCC-CCC--C---CCCcc
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVI----LNLINGD-QSF--A---FPYIF 227 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~----~~~~~g~-~~~--~---~~~~~ 227 (322)
++|+.+|..+--++-.|.+.+++-.+---.++.-.|..... ++-..+ .++--|+ ..+ + ..|||
T Consensus 182 -----SPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGen--FVTRKItRsvakI~~gqqe~~~LGNL~a~RDW 254 (376)
T KOG1372|consen 182 -----SPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGEN--FVTRKITRSVAKISLGQQEKIELGNLSALRDW 254 (376)
T ss_pred -----ChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccc--hhhHHHHHHHHHhhhcceeeEEecchhhhccc
Confidence 88999999999999889888888777666666667765432 222222 3333344 222 2 78999
Q ss_pred eeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCC-c---------------------cCCCC
Q 020747 228 VEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL-E---------------------EKYQP 285 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~-~---------------------~~~~~ 285 (322)
-|..|-+++++.++++.......+.+++..|++|+++.-....|..-.+... . +-...
T Consensus 255 GhA~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd 334 (376)
T KOG1372|consen 255 GHAGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVD 334 (376)
T ss_pred chhHHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhh
Confidence 9999999999999998765544467799999999999887766532111100 0 22233
Q ss_pred ccccchHHH-HhhCCcc-cchhhhHHHHHH
Q 020747 286 TIKVSQERA-KSLGINF-TPWEVGVRGCIE 313 (322)
Q Consensus 286 ~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~ 313 (322)
.+.-|.+|+ +.|||+| .++.+.+++++.
T Consensus 335 ~LqGdasKAk~~LgW~pkv~f~eLVkeMv~ 364 (376)
T KOG1372|consen 335 TLQGDASKAKKTLGWKPKVTFPELVKEMVA 364 (376)
T ss_pred hhcCChHHHHHhhCCCCccCHHHHHHHHHH
Confidence 556788999 8899999 999999998885
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=212.01 Aligned_cols=218 Identities=23% Similarity=0.261 Sum_probs=131.3
Q ss_pred EECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcCh-hhh-hhccC----------CCCcEEEEEccCCCcc------c
Q 020747 13 VTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKT-EHL-RELDG----------ATERLHLFKANLLEEG------S 72 (322)
Q Consensus 13 VtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~-~~~~~----------~~~~~~~~~~Dl~~~~------~ 72 (322)
|||||||+|++|+++|++++. +|+++.|..+.... +.+ ..+.. ...+++++.||++++. +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999986 89999998654222 222 11110 1468999999999864 5
Q ss_pred hHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCcc--ccCC
Q 020747 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVV--IDET 150 (322)
Q Consensus 73 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~--~~E~ 150 (322)
++.+.+++|+|||+||.+... .+...+.++|+.||.++++.|... +.++|+|+||+ .+.+.......+.. ..|+
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~~~--~~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iSTa-~v~~~~~~~~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVNFN--APYSELRAVNVDGTRNLLRLAAQG-KRKRFHYISTA-YVAGSRPGTIEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS-SBS---S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEEG-GGTTS-TTT--SSS-HHH--
T ss_pred hhccccccceeeecchhhhhc--ccchhhhhhHHHHHHHHHHHHHhc-cCcceEEeccc-cccCCCCCcccccccccccc
Confidence 667778999999999987653 355678999999999999999976 55699999994 56554431100111 1111
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc---cHHHHHH-HHcCC-CCCC---
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF---GAEVILN-LINGD-QSFA--- 222 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~---~~~~~~~-~~~g~-~~~~--- 222 (322)
. ........+.|..||+.+|+++++.+++.|++++|+|||.|+|....+.... ...++.. +..|. +..+
T Consensus 157 ~---~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 233 (249)
T PF07993_consen 157 D---LDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDP 233 (249)
T ss_dssp E---EE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB--
T ss_pred c---chhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCC
Confidence 1 1111122367999999999999999988899999999999999544332221 2333333 34444 4333
Q ss_pred -CCCcceeHHHHHHHH
Q 020747 223 -FPYIFVEIRDVVYAH 237 (322)
Q Consensus 223 -~~~~~i~~~D~a~~~ 237 (322)
...++++||.+|++|
T Consensus 234 ~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 234 DARLDLVPVDYVARAI 249 (249)
T ss_dssp -TT--EEEHHHHHHHH
T ss_pred CceEeEECHHHHHhhC
Confidence 469999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=224.24 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=177.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCC---eEEEEEeCCCCcCh-hhhh-hc------------cC------CCCcEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGY---TVKATVRDPNSPKT-EHLR-EL------------DG------ATERLH 61 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~-~~~~-~~------------~~------~~~~~~ 61 (322)
..++|+|||||||||||++|+++|++.+. +|+++.|..+.... +.+. ++ .. ...++.
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 35689999999999999999999998764 67999997654322 2221 11 00 135789
Q ss_pred EEEccCCCcc------chHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhc
Q 020747 62 LFKANLLEEG------SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAML 135 (322)
Q Consensus 62 ~~~~Dl~~~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~ 135 (322)
.+.||++++. ..+.+.+++|+|||+|+.... ..++...+++|+.|+.+++++|++..+.++|||+||+ .+|
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f--~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTa-yVy 272 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF--DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTA-YVN 272 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc--ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCc-eee
Confidence 9999999973 556677789999999997653 3456788999999999999999886457899999998 666
Q ss_pred cCCCCCCCCccccCCC-----------------CCCc-------------------------------ccccccchhHHH
Q 020747 136 LNETPMTPDVVIDETW-----------------FSNP-------------------------------VLCKENKEWYSL 167 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~-----------------~~~~-------------------------------~~~~~~~~~Y~~ 167 (322)
+.......+.+++... +.++ .......+.|..
T Consensus 273 G~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~ 352 (605)
T PLN02503 273 GQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF 352 (605)
T ss_pred cCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHH
Confidence 6542111122221000 0000 011112277999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC------CccHHHHHHHHcCC-CCCC----CCCcceeHHHHHHH
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL------NFGAEVILNLINGD-QSFA----FPYIFVEIRDVVYA 236 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~------~~~~~~~~~~~~g~-~~~~----~~~~~i~~~D~a~~ 236 (322)
+|+.+|+++.+.. .+++++|+||+.|.+....|.. ......+.....|. ..+. ...|+|++|.+|.+
T Consensus 353 TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna 430 (605)
T PLN02503 353 TKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNA 430 (605)
T ss_pred HHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHH
Confidence 9999999998654 3899999999999443222110 00001111222343 2222 78899999999999
Q ss_pred HHHhhcC----C-CCCccEEEe-c--CCCCHHHHHHHHHHhCC
Q 020747 237 HIRALEV----P-KASGRYLLA-G--SVAQHSDILKFLREHYP 271 (322)
Q Consensus 237 ~~~~~~~----~-~~~g~~~~~-~--~~~~~~e~~~~i~~~~~ 271 (322)
++.++.. . ....+|+++ + .+++++++.+.+.+.+.
T Consensus 431 ~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~ 473 (605)
T PLN02503 431 TLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYK 473 (605)
T ss_pred HHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHh
Confidence 9998431 1 123489876 5 78999999999998764
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=228.19 Aligned_cols=263 Identities=13% Similarity=0.185 Sum_probs=185.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
+.|+||||||+||||++|+++|.++|++|... .+|++|++.++..++ ++|+||
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~-------------------------~~~l~d~~~v~~~i~~~~pd~Vi 433 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG-------------------------KGRLEDRSSLLADIRNVKPTHVF 433 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEee-------------------------ccccccHHHHHHHHHhhCCCEEE
Confidence 45799999999999999999999999987311 145677777877776 689999
Q ss_pred EcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCC--CCCCCccccCCCCCCcccc
Q 020747 85 HTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNET--PMTPDVVIDETWFSNPVLC 158 (322)
Q Consensus 85 h~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~--~~~~~~~~~E~~~~~~~~~ 158 (322)
|+||.... .+..++...+++|+.++.+++++|++. +++ +|++||. .+|+... ......+++|++++.+.
T Consensus 434 h~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~-~v~~~~~~~~~~~~~p~~E~~~~~~~-- 508 (668)
T PLN02260 434 NAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATG-CIFEYDAKHPEGSGIGFKEEDKPNFT-- 508 (668)
T ss_pred ECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEccc-ceecCCcccccccCCCCCcCCCCCCC--
Confidence 99997632 224466789999999999999999998 775 6777776 4543211 00113468887655432
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHH
Q 020747 159 KENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHI 238 (322)
Q Consensus 159 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~ 238 (322)
.+.|+.||+++|+++..+. +..++|+..+||..... ...++..+++....+.-..+..+++|++.+++
T Consensus 509 ---~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~----~~nfv~~~~~~~~~~~vp~~~~~~~~~~~~~~ 576 (668)
T PLN02260 509 ---GSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN----PRNFITKISRYNKVVNIPNSMTVLDELLPISI 576 (668)
T ss_pred ---CChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC----ccHHHHHHhccceeeccCCCceehhhHHHHHH
Confidence 1669999999999998764 45677777777643221 12345555554422221235677899999988
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCC-C---CCCCCC-----CccCCCCccccchHHH-HhhCCcccchhhh
Q 020747 239 RALEVPKASGRYLLA-GSVAQHSDILKFLREHYP-T---LLRSGK-----LEEKYQPTIKVSQERA-KSLGINFTPWEVG 307 (322)
Q Consensus 239 ~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~-~---~~~~~~-----~~~~~~~~~~~~~~k~-~~lg~~~~~~~~~ 307 (322)
.+++. ..+|+||++ ++.+|++|+++.|.+..+ . .++... ...+.... .+|++|+ +.+|. +++|+|+
T Consensus 577 ~l~~~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~~~~~~~ 653 (668)
T PLN02260 577 EMAKR-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-LLSIKES 653 (668)
T ss_pred HHHHh-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-ccchHHH
Confidence 88875 346899877 577999999999999763 1 122111 00122233 8999999 66899 9999999
Q ss_pred HHHHHHH
Q 020747 308 VRGCIES 314 (322)
Q Consensus 308 l~~~~~~ 314 (322)
|++++..
T Consensus 654 l~~~~~~ 660 (668)
T PLN02260 654 LIKYVFE 660 (668)
T ss_pred HHHHHhh
Confidence 9988753
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=222.04 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=170.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+||||+||||++|+++|+++||+|++++|...... ..+++++++|++|+. +.++++++|+|||+|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~----------~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL----------DPRVDYVCASLRNPV-LQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc----------cCCceEEEccCCCHH-HHHHhcCCCEEEEcCc
Confidence 37999999999999999999999999999998653211 235789999999984 7788889999999998
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.... ...++|+.|+.|++++|++. ++ ++||+||.. +.+. .|.
T Consensus 70 ~~~~-------~~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~~---G~~~------------------------~~~-- 111 (699)
T PRK12320 70 VDTS-------APGGVGITGLAHVANAAARA-GA-RLLFVSQAA---GRPE------------------------LYR-- 111 (699)
T ss_pred cCcc-------chhhHHHHHHHHHHHHHHHc-CC-eEEEEECCC---CCCc------------------------ccc--
Confidence 6321 12358999999999999997 76 799999862 2211 132
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC-CccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL-NFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKAS 247 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~ 247 (322)
.+|.++. .++++++++|++++|||...... .....++.....+ +...+||++|++++++.+++.+. .
T Consensus 112 --~aE~ll~----~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~-----~pI~vIyVdDvv~alv~al~~~~-~ 179 (699)
T PRK12320 112 --QAETLVS----TGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSA-----RPIRVLHLDDLVRFLVLALNTDR-N 179 (699)
T ss_pred --HHHHHHH----hcCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcC-----CceEEEEHHHHHHHHHHHHhCCC-C
Confidence 3565543 45789999999999999654321 1223333333333 33457999999999999998643 5
Q ss_pred ccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCccccchHHH-HhhCCcc-cchhh--hHHHH
Q 020747 248 GRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERA-KSLGINF-TPWEV--GVRGC 311 (322)
Q Consensus 248 g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~--~l~~~ 311 (322)
|+||++ ++.+|++|+++.+....+..... ...+-....-|.... ..++|.| ..|+. .+.++
T Consensus 180 GiyNIG~~~~~Si~el~~~i~~~~p~~~~~---~~~~~~~~~pdi~~a~~~~~w~~~~~~~~~~~~~~~ 245 (699)
T PRK12320 180 GVVDLATPDTTNVVTAWRLLRSVDPHLRTR---RVRSWEQLIPEVDIAAVQEDWNFEFGWQATEAIVDT 245 (699)
T ss_pred CEEEEeCCCeeEHHHHHHHHHHhCCCcccc---ccccHHHhCCCCchhhhhcCCCCcchHHHHHHHHhh
Confidence 688665 68999999999998875422211 112223345666676 6678888 76664 44443
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=203.65 Aligned_cols=232 Identities=23% Similarity=0.240 Sum_probs=164.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|++|||||+||||++++++|+++|++|++++|+.... +.+... ...++.++++|++|+++++++++ ++|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~--~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDAL--DDLKAR--YGDRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHh--ccCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999999999999999999999875322 111111 12468899999999998877654 479
Q ss_pred EEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|||+||..... ....+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------------- 144 (276)
T PRK06482 79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPG-------------- 144 (276)
T ss_pred EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCC--------------
Confidence 999999975331 12334678889999999999997332 25679999999744322211
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCc---cCCCCCCCC--C----ccHHHHHHHHcCCCCC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTV---IGPFFQPIL--N----FGAEVILNLINGDQSF 221 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v---~G~~~~~~~--~----~~~~~~~~~~~g~~~~ 221 (322)
.+.|+.||++.|.+++.++++ +|++++++|||.+ ||+...... . .....+.+.+...
T Consensus 145 --------~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 213 (276)
T PRK06482 145 --------FSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADG--- 213 (276)
T ss_pred --------CchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhc---
Confidence 156999999999999999876 5999999999988 554332110 0 0111222222222
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHY 270 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~ 270 (322)
...-+.+++|++++++.++..+..+..|+++ +...+.+|+++.+.+..
T Consensus 214 -~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (276)
T PRK06482 214 -SFAIPGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAAL 262 (276)
T ss_pred -cCCCCCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHH
Confidence 2222568999999999999876555578766 56677777777665554
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=201.79 Aligned_cols=226 Identities=20% Similarity=0.200 Sum_probs=159.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||.. +++|++|||||+|+||++++++|+++|++|++++|++.... +....+...+.++.++++|++|++.++++++
T Consensus 1 ~~~~-~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 1 MMSN-LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGAN-AVADEINKAGGKAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred Cccc-CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHH-HHHHHHHhcCceEEEEECCCCCHHHHHHHHHHH
Confidence 5553 56789999999999999999999999999999998764322 2222332234568889999999998877665
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHH----HHHHHHHH-hhcCCccEEEEecchhhhccCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMG----TLNVLRSC-AKVHSIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~----~~~l~~~~-~~~~~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
.+|+|||+||.... ...+.+...+++|+.+ +.++++++ +.. +.++||++||..+.++.+.
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss~~~~~~~~~---- 153 (262)
T PRK13394 79 AERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGSVHSHEASPL---- 153 (262)
T ss_pred HHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcchhhcCCCCC----
Confidence 38999999997532 1223345678899999 55555655 443 6789999999755433221
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCc--------cHHHHH
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNF--------GAEVIL 212 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~ 212 (322)
.+.|+.+|.+.+.+++.++++ .+++++++|||.++++........ ......
T Consensus 154 ------------------~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (262)
T PRK13394 154 ------------------KSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVK 215 (262)
T ss_pred ------------------CcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHH
Confidence 145999999999999999877 489999999999999864321110 011122
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
+++.+.. +.++|++++|++++++.+++... ..| .|++++
T Consensus 216 ~~~~~~~---~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~ 257 (262)
T PRK13394 216 KVMLGKT---VDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSH 257 (262)
T ss_pred HHHhcCC---CCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCC
Confidence 2222110 55789999999999999997643 335 455554
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=195.79 Aligned_cols=225 Identities=20% Similarity=0.123 Sum_probs=159.1
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||...+++|+++||||+|+||++++++|+++|++|++++|+... .+...++.....++.++.+|++|+++++++++
T Consensus 1 ~~~~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 1 MMNQRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV--HEVAAELRAAGGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CcccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH--HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHH
Confidence 67777888999999999999999999999999999999986421 12222232224567889999999988776665
Q ss_pred -----CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 -----GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 -----~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||... ......+...+++|+.++..+++.+.+. .+.++||++||... ++...
T Consensus 79 ~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~-~~~~~----- 152 (260)
T PRK12823 79 VEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIAT-RGINR----- 152 (260)
T ss_pred HHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccc-cCCCC-----
Confidence 5799999998431 1233445677899999998777766542 14578999999843 22111
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCC--------C--CCccHHHH
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQP--------I--LNFGAEVI 211 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~--------~--~~~~~~~~ 211 (322)
.+|+.||++.+.+++.++.++ |+++++++||.|++|.... . .......+
T Consensus 153 ------------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 214 (260)
T PRK12823 153 ------------------VPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIV 214 (260)
T ss_pred ------------------CccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHH
Confidence 349999999999999998875 9999999999999974210 0 00111222
Q ss_pred HHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 212 LNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 212 ~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+...+. +...+.+++|+|+++++++... ...| .+++.++
T Consensus 215 ~~~~~~~----~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 257 (260)
T PRK12823 215 DQTLDSS----LMKRYGTIDEQVAAILFLASDEASYITGTVLPVGGG 257 (260)
T ss_pred HHHhccC----CcccCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence 2233222 3345668999999999998754 2345 4555543
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=195.07 Aligned_cols=220 Identities=18% Similarity=0.156 Sum_probs=159.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
|++|+|+||||||+||++|+++|+++|++|+++.|+.................++.++.+|++|+++++++++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 5668999999999999999999999999998877765432222222222224568899999999998887764
Q ss_pred CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhh---cCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAK---VHSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~---~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||..... ....+...++.|+.++.++++.+.+ ..+.++||++||..++++...
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~----------- 152 (249)
T PRK12825 84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPG----------- 152 (249)
T ss_pred CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCC-----------
Confidence 579999999964331 2334567889999999999999843 126789999999855543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++++ .+++++++|||.++|+........ ..... .+.. ....+
T Consensus 153 -----------~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~--~~~~~----~~~~-~~~~~ 214 (249)
T PRK12825 153 -----------RSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEE--AREAK----DAET-PLGRS 214 (249)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccch--hHHhh----hccC-CCCCC
Confidence 145999999999999988876 599999999999999875443211 11111 0011 44458
Q ss_pred eeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 228 VEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
++++|+++++.+++++.. ..| .|++.+
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~i~~ 244 (249)
T PRK12825 215 GTPEDIARAVAFLCSDASDYITGQVIEVTG 244 (249)
T ss_pred cCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence 999999999999997653 345 555553
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=196.33 Aligned_cols=231 Identities=21% Similarity=0.189 Sum_probs=168.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+|+||||+|+||++++++|+++|++|++++|+.+.. ..+... ...++..+++|++|+++++++++ .+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~--~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATL--ADLAEK--YGDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHh--ccCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999875432 111111 13457888999999998876655 57
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.+.+.+++|+.++.++++++. +. +.+++|++||..++.+.+..
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~~~~~~~~~~----------- 146 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHIIQISSIGGISAFPMS----------- 146 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcChhhcCCCCCc-----------
Confidence 999999997533 2234567889999999999988874 33 56799999998565443321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC------ccHHHHHHHHcCCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN------FGAEVILNLINGDQSFA 222 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~------~~~~~~~~~~~g~~~~~ 222 (322)
+.|+.+|++.+.+.+.++.+ +|++++++|||.+.++....... ........+....
T Consensus 147 -----------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (275)
T PRK08263 147 -----------GIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQW---- 211 (275)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHH----
Confidence 45999999999999998876 59999999999998875431110 0011111111111
Q ss_pred CCCcc-eeHHHHHHHHHHhhcCCCCCccEEEec--CCCCHHHHHHHHHHh
Q 020747 223 FPYIF-VEIRDVVYAHIRALEVPKASGRYLLAG--SVAQHSDILKFLREH 269 (322)
Q Consensus 223 ~~~~~-i~~~D~a~~~~~~~~~~~~~g~~~~~~--~~~~~~e~~~~i~~~ 269 (322)
....+ ++++|++++++.+++.+...+.|++.. ..+++.++.+.+.+.
T Consensus 212 ~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 212 SERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred HhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 23445 889999999999999877677675543 577888888888775
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=193.92 Aligned_cols=224 Identities=17% Similarity=0.178 Sum_probs=158.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
|++++++||||+|+||++++++|+++|++|++++|++.+.. ....++.....++..+.+|++|++++.++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAA-AAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34689999999999999999999999999999999865432 2222222234578899999999998877766
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+|+.... .....+...+++|+.++.++++.+.+. .+.++||++||..++++...
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~----------- 149 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAG----------- 149 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCC-----------
Confidence 57999999986433 122234567889999977776666542 25789999999866654322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--------cHHHHHHHHcCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--------GAEVILNLINGDQ 219 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~~~~g~~ 219 (322)
.+.|+.+|.+.+.+++.++.+. +++++++|||.+++|........ ....+........
T Consensus 150 -----------~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (258)
T PRK12429 150 -----------KAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLV 218 (258)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccC
Confidence 1459999999999999887764 89999999999999864321110 0001111111100
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
+.++|++++|+|++++.++.... ..| .|+++++
T Consensus 219 ---~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 219 ---PQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred ---CccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 45789999999999999987643 335 4555543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=193.37 Aligned_cols=228 Identities=21% Similarity=0.190 Sum_probs=159.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+||||++++++|+++|++|++++|+.+.........+.....++..+++|++|+++++++++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999999999998875322111112222223467889999999998877665
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
++|+|||+|+..... ...+...+++|+.++.++++++.+.+. .+++|++||..+.+... .+..+.
T Consensus 84 ~~d~vi~~ag~~~~~-~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~---------~~~~~~---- 149 (248)
T PRK07806 84 GLDALVLNASGGMES-GMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT---------VKTMPE---- 149 (248)
T ss_pred CCcEEEECCCCCCCC-CCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc---------ccCCcc----
Confidence 589999999864322 234567889999999999999987532 35899999963332111 011111
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC-ccHHHHHHHHcCCCCCCCCCcceeHHHH
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN-FGAEVILNLINGDQSFAFPYIFVEIRDV 233 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~i~~~D~ 233 (322)
.+.|+.||+++|.+++.++.+ .++++++++|+.+-++....... ......... .. ...++++++|+
T Consensus 150 ----~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~dv 219 (248)
T PRK07806 150 ----YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIEAR--RE----AAGKLYTVSEF 219 (248)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHHHH--Hh----hhcccCCHHHH
Confidence 146999999999999999876 48999999999887764221100 011111110 00 34578999999
Q ss_pred HHHHHHhhcCCCCCc-cEEEecCCC
Q 020747 234 VYAHIRALEVPKASG-RYLLAGSVA 257 (322)
Q Consensus 234 a~~~~~~~~~~~~~g-~~~~~~~~~ 257 (322)
|++++.++++...+| .|++++...
T Consensus 220 a~~~~~l~~~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 220 AAEVARAVTAPVPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHhhccccCccEEEecCccc
Confidence 999999999776667 567765543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=192.74 Aligned_cols=223 Identities=17% Similarity=0.142 Sum_probs=161.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. .....+.....++.++.+|++|+++++++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAA-ATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999999854321 2222233234568899999999998888775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhh-ccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAM-LLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~-~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... .....+.+.++.|+.++.++++++.+. .+.++||++||..+. .+.+.
T Consensus 83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~---------- 152 (251)
T PRK12826 83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPG---------- 152 (251)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCC----------
Confidence 58999999987543 223345678999999999999988532 256789999998544 22111
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.+|.+++.+++.++.+ .+++++++|||.++|+........ .....+..+. +...
T Consensus 153 ------------~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~--~~~~~~~~~~----~~~~ 214 (251)
T PRK12826 153 ------------LAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA--QWAEAIAAAI----PLGR 214 (251)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch--HHHHHHHhcC----CCCC
Confidence 145999999999999998876 389999999999999975432221 1111122222 3346
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCc-cEEEecCCC
Q 020747 227 FVEIRDVVYAHIRALEVPK--ASG-RYLLAGSVA 257 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~~~ 257 (322)
+++++|++++++.++.... ..| .+++.++..
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred CcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 8999999999999887642 245 556665443
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=190.59 Aligned_cols=221 Identities=17% Similarity=0.160 Sum_probs=152.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++.++|+||||+||||++++++|+++|++|++++|+...........+.. ....+.++.+|++|.+++.++++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34589999999999999999999999999999998643221111111111 12357889999999998887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... .....+...+++|+.++.++++++.+.. ..+.++++||..+..
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 148 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAER--------------- 148 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcC---------------
Confidence 47999999996432 1123356788999999999999997531 224566666542211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
+..+. +.|+.+|.++|.+++.+++++ +++++++|||.++||......+ .........+. ....+.
T Consensus 149 -~~~~~------~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~ 215 (249)
T PRK09135 149 -PLKGY------PVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFD--EEARQAILART----PLKRIG 215 (249)
T ss_pred -CCCCc------hhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCC--HHHHHHHHhcC----CcCCCc
Confidence 11111 569999999999999999875 6999999999999998643222 22222233332 223334
Q ss_pred eHHHHHHHHHHhhcCC-CCCc-cEEEec
Q 020747 229 EIRDVVYAHIRALEVP-KASG-RYLLAG 254 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~-~~~g-~~~~~~ 254 (322)
+++|++++++.++... ...| .|++++
T Consensus 216 ~~~d~a~~~~~~~~~~~~~~g~~~~i~~ 243 (249)
T PRK09135 216 TPEDIAEAVRFLLADASFITGQILAVDG 243 (249)
T ss_pred CHHHHHHHHHHHcCccccccCcEEEECC
Confidence 6999999997766542 3345 677664
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=198.77 Aligned_cols=253 Identities=21% Similarity=0.244 Sum_probs=172.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcCh-hhhhhc-c-------CCCCcEEEEEccCCCcc------c
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKT-EHLREL-D-------GATERLHLFKANLLEEG------S 72 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-~~~~~~-~-------~~~~~~~~~~~Dl~~~~------~ 72 (322)
++||+||||||+|++|+.+|+.+- .+|++++|..++... ..+... . ....+++.+.||+..+. .
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 479999999999999999999875 499999998774322 222221 1 23578999999998543 5
Q ss_pred hHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 73 FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 73 ~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++.+.+.+|.|||+||.+.. -.+..++...|+.||..+++.|... +.|.++|+||+ +++............+|+.+
T Consensus 81 ~~~La~~vD~I~H~gA~Vn~--v~pYs~L~~~NVlGT~evlrLa~~g-k~Kp~~yVSsi-sv~~~~~~~~~~~~~~~~~~ 156 (382)
T COG3320 81 WQELAENVDLIIHNAALVNH--VFPYSELRGANVLGTAEVLRLAATG-KPKPLHYVSSI-SVGETEYYSNFTVDFDEISP 156 (382)
T ss_pred HHHHhhhcceEEecchhhcc--cCcHHHhcCcchHhHHHHHHHHhcC-CCceeEEEeee-eeccccccCCCccccccccc
Confidence 77888899999999998765 3455688899999999999999986 67889999999 55433322111223332222
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC---CCCC---CCCc
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD---QSFA---FPYI 226 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~---~~~~---~~~~ 226 (322)
.... .....+.|+.||+++|.++++.... |++++|+|||.|.|+...+..+. .+++.++..+. ..+| ...+
T Consensus 157 ~~~~-~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~-~D~~~Rlv~~~~~lg~~P~~~~~~~ 233 (382)
T COG3320 157 TRNV-GQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNT-RDFLTRLVLGLLQLGIAPDSEYSLD 233 (382)
T ss_pred cccc-cCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCcccc-chHHHHHHHHHHHhCCCCCcccchh
Confidence 2111 1122256999999999999998876 99999999999999987554432 33444444433 3333 3444
Q ss_pred ceeHHHHHHHHHH-----------hhcCCC-CCccEE--EecCCCCHHHHHHHHHH
Q 020747 227 FVEIRDVVYAHIR-----------ALEVPK-ASGRYL--LAGSVAQHSDILKFLRE 268 (322)
Q Consensus 227 ~i~~~D~a~~~~~-----------~~~~~~-~~g~~~--~~~~~~~~~e~~~~i~~ 268 (322)
++.++++++++.. +..++. .-..|. .-+..++..++.+++.+
T Consensus 234 ~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 234 MLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred hCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 5554444443333 222211 112444 23678999999999988
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=193.30 Aligned_cols=222 Identities=18% Similarity=0.136 Sum_probs=156.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++++|+||||+|+||++++++|+++|++|++++|+.... ..+... ...++..+.+|++|++++.++++ +
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~--~~l~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR--ADFEAL--HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH--HHHHhh--cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999999999999975432 111111 13467889999999998877766 4
Q ss_pred CCEEEEcccCccc--C---CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF--L---SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~--~---~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... . ..+.+...+++|+.|+.++++++.+. .+.++||++||..+..+.+.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~------------ 146 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPG------------ 146 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCC------------
Confidence 7999999997432 1 12234567899999999999996542 24578999999855543321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC----ccHHH---HHHHHcCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN----FGAEV---ILNLINGDQSF 221 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~----~~~~~---~~~~~~g~~~~ 221 (322)
.+.|+.+|++.|.+++.++.+ +|++++++|||.+.++....... ..... ......... .
T Consensus 147 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 215 (277)
T PRK06180 147 ----------IGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE-A 215 (277)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH-h
Confidence 145999999999999998876 49999999999998875332111 11111 101000000 0
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCCCCccEEEecC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGS 255 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~ 255 (322)
.....+..++|+|++++.+++++.....|.++..
T Consensus 216 ~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~ 249 (277)
T PRK06180 216 KSGKQPGDPAKAAQAILAAVESDEPPLHLLLGSD 249 (277)
T ss_pred hccCCCCCHHHHHHHHHHHHcCCCCCeeEeccHH
Confidence 0234467899999999999998765556665543
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=191.81 Aligned_cols=228 Identities=16% Similarity=0.131 Sum_probs=158.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||+ +++++|+||||+|+||++++++|+++|++|++..|+...........+.....++..+.+|++++++++.+++
T Consensus 1 ~~~--~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (252)
T PRK06077 1 MYS--LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKAT 78 (252)
T ss_pred CCC--CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHH
Confidence 554 4568999999999999999999999999998877654322222222232223467788999999998876655
Q ss_pred -----CCCEEEEcccCccc--C---CCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -----GCDGVFHTASPVIF--L---SDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -----~~d~vih~A~~~~~--~---~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... . ....+...+++|+.++.++++++.+.. ..++||++||..++.+.+.
T Consensus 79 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 150 (252)
T PRK06077 79 IDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAYG-------- 150 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCCC--------
Confidence 57999999996322 1 112235678999999999999988652 2358999999854432211
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.+.|+.+|++.|.+++.+++++ ++++.+++||.+.++................... +....
T Consensus 151 --------------~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~---~~~~~ 213 (252)
T PRK06077 151 --------------LSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEK---FTLMG 213 (252)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHh---cCcCC
Confidence 1569999999999999999886 7899999999998875322111000000011110 11345
Q ss_pred cceeHHHHHHHHHHhhcCCCCCc-cEEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVPKASG-RYLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~~ 255 (322)
.+++++|+|++++.++..+...| .|+++++
T Consensus 214 ~~~~~~dva~~~~~~~~~~~~~g~~~~i~~g 244 (252)
T PRK06077 214 KILDPEEVAEFVAAILKIESITGQVFVLDSG 244 (252)
T ss_pred CCCCHHHHHHHHHHHhCccccCCCeEEecCC
Confidence 78999999999999997665445 6666643
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=189.41 Aligned_cols=221 Identities=16% Similarity=0.111 Sum_probs=160.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG------ 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------ 79 (322)
+++++++||||+|+||++++++|+++|++|+++.++......+....+...+.++.++.+|++|++++.++++.
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999987655432221122222322235688999999999988877764
Q ss_pred -CCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 80 -CDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 80 -~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
+|+|||+||..... ....+.+.+++|+.++.++++++.+. .+.+++|++||..+..+...
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 152 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFG----------- 152 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCC-----------
Confidence 79999999975431 12455678999999999999998753 13468999999855543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+.|+.+|.+.+.+++.++.+. ++++++++||.+.++..... . .........+. +.+.+
T Consensus 153 -----------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~-~--~~~~~~~~~~~----~~~~~ 214 (247)
T PRK12935 153 -----------QTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEV-P--EEVRQKIVAKI----PKKRF 214 (247)
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhc-c--HHHHHHHHHhC----CCCCC
Confidence 1459999999999998888764 99999999999987653221 1 11122222333 55778
Q ss_pred eeHHHHHHHHHHhhcCCC-CCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVPK-ASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~-~~g-~~~~~~~ 255 (322)
.|++|++++++.+++... ..| .|++.++
T Consensus 215 ~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 215 GQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred cCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 999999999999987542 234 6776654
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=192.12 Aligned_cols=219 Identities=19% Similarity=0.224 Sum_probs=157.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||++++++|+++|++|++++|+..+........+.....++.++++|++|++++.++++ .+|
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID 82 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999999875432222222222223568999999999998776655 579
Q ss_pred EEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC----C-----ccEEEEecchhhhccCCCCCCCCc
Q 020747 82 GVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH----S-----IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 82 ~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~-----~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
+|||+||.... .....+...+++|+.++.++++++.+.+ + .++||++||..+.++....
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----- 157 (256)
T PRK12745 83 CLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNR----- 157 (256)
T ss_pred EEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCC-----
Confidence 99999986432 1223456779999999999999876531 1 4679999998665543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
+.|+.+|++.+.+++.++.+ +|++++++|||.+.++...... .........+..
T Consensus 158 -----------------~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~--- 214 (256)
T PRK12745 158 -----------------GEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVT---AKYDALIAKGLV--- 214 (256)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccc---hhHHhhhhhcCC---
Confidence 45999999999999999876 5899999999999987643211 111111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
....+.+++|+++++..++.... ..| .|++.++
T Consensus 215 ~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg 250 (256)
T PRK12745 215 PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG 250 (256)
T ss_pred CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence 34567899999999999886542 345 5566553
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=227.48 Aligned_cols=255 Identities=24% Similarity=0.277 Sum_probs=178.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC----CeEEEEEeCCCCcCh-hhhhhc--------cCCCCcEEEEEccCCCc----
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG----YTVKATVRDPNSPKT-EHLREL--------DGATERLHLFKANLLEE---- 70 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~-~~~~~~--------~~~~~~~~~~~~Dl~~~---- 70 (322)
.++|+|||||||||++++++|++++ ++|+++.|..+.... ..+... .....+++++.+|++++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 4799999999999999999999987 789999997543321 111110 00123689999999865
Q ss_pred --cchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCC-------
Q 020747 71 --GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPM------- 141 (322)
Q Consensus 71 --~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~------- 141 (322)
+.++.+.+++|+|||+|+.+.. ..+.......|+.|+.+++++|.+. ++++|+|+||. ++++.....
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~~--~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~vSS~-~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVHW--VYPYSKLRDANVIGTINVLNLCAEG-KAKQFSFVSST-SALDTEYYVNLSDELV 1126 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEecC--ccCHHHHHHhHHHHHHHHHHHHHhC-CCceEEEEeCe-eecCcccccchhhhhh
Confidence 3456677789999999997643 3344456678999999999999987 78899999999 444321100
Q ss_pred -CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--
Q 020747 142 -TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-- 218 (322)
Q Consensus 142 -~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-- 218 (322)
.....+.|+.+..+.. ....+.|+.||+++|.++..+.+. |++++++|||.|||+...+... ...++..++.+.
T Consensus 1127 ~~~~~~~~e~~~~~~~~-~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~-~~~~~~~~~~~~~~ 1203 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSS-KGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATN-TDDFLLRMLKGCIQ 1203 (1389)
T ss_pred hccCCCCCccccccccc-ccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCC-chhHHHHHHHHHHH
Confidence 0012344443322211 111245999999999999987654 9999999999999997554322 223333333322
Q ss_pred -CCCC---CCCcceeHHHHHHHHHHhhcCCCC--Cc-cEEEe-cCCCCHHHHHHHHHHh
Q 020747 219 -QSFA---FPYIFVEIRDVVYAHIRALEVPKA--SG-RYLLA-GSVAQHSDILKFLREH 269 (322)
Q Consensus 219 -~~~~---~~~~~i~~~D~a~~~~~~~~~~~~--~g-~~~~~-~~~~~~~e~~~~i~~~ 269 (322)
..++ ..++|++++|++++++.++.++.. .+ +|+++ +..+++.++++.+.+.
T Consensus 1204 ~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443 1204 LGLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred hCCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence 2223 678999999999999999876532 22 67776 4588999999999775
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=184.37 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=198.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+.+..+-|.|||||+|+.+|.+|.+.|-+|++-.|..... .......++-.++-+...|+.|+++++++++...+|||
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~--~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVIN 136 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYD--PRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVIN 136 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccc--hhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEE
Confidence 4456778999999999999999999999999999865332 22222334456889999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+-|-- .+...-.+.++|+.++..+.+.|++. |+.||||+|+..+-. .. .+.|
T Consensus 137 LIGrd---~eTknf~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv-~s-----------------------~Sr~ 188 (391)
T KOG2865|consen 137 LIGRD---YETKNFSFEDVNVHIAERLARICKEA-GVERFIHVSCLGANV-KS-----------------------PSRM 188 (391)
T ss_pred eeccc---cccCCcccccccchHHHHHHHHHHhh-Chhheeehhhccccc-cC-----------------------hHHH
Confidence 98742 12222467899999999999999998 999999999973210 11 0559
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC----CCCcceeHHHHHHHHHHh
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA----FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~~~i~~~D~a~~~~~~ 240 (322)
-.+|+++|..++... -..+|+||..+||..+.- .+....++++ .|. +++. .....||+-|+|.+|+.+
T Consensus 189 LrsK~~gE~aVrdaf----PeAtIirPa~iyG~eDrf-ln~ya~~~rk--~~~~pL~~~GekT~K~PVyV~DVaa~IvnA 261 (391)
T KOG2865|consen 189 LRSKAAGEEAVRDAF----PEATIIRPADIYGTEDRF-LNYYASFWRK--FGFLPLIGKGEKTVKQPVYVVDVAAAIVNA 261 (391)
T ss_pred HHhhhhhHHHHHhhC----CcceeechhhhcccchhH-HHHHHHHHHh--cCceeeecCCcceeeccEEEehHHHHHHHh
Confidence 999999999997543 367999999999976542 3333444444 333 5554 567899999999999999
Q ss_pred hcCCCCCc-cE-EEecCCCCHHHHHHHHHHhCCC------CCCCCCCc------------------------cCCCCccc
Q 020747 241 LEVPKASG-RY-LLAGSVAQHSDILKFLREHYPT------LLRSGKLE------------------------EKYQPTIK 288 (322)
Q Consensus 241 ~~~~~~~g-~~-~~~~~~~~~~e~~~~i~~~~~~------~~~~~~~~------------------------~~~~~~~~ 288 (322)
+.++.+.| +| ++++..+.+.|+++++-+..-. .++|.... ....++.+
T Consensus 262 vkDp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln~d~ie~~~v~~~v 341 (391)
T KOG2865|consen 262 VKDPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLNRDQIERLTVTDLV 341 (391)
T ss_pred ccCccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCCHHHhhheeehhhh
Confidence 99998777 78 5667899999999998664311 12222111 11122344
Q ss_pred cchHHH-HhhCCcccchhhhHHHHHHHH
Q 020747 289 VSQERA-KSLGINFTPWEVGVRGCIESL 315 (322)
Q Consensus 289 ~~~~k~-~~lg~~~~~~~~~l~~~~~~~ 315 (322)
.+.... ++||..++.+|..--+.+..|
T Consensus 342 lt~~~tleDLgv~~t~le~~~~e~l~~y 369 (391)
T KOG2865|consen 342 LTGAPTLEDLGVVLTKLELYPVEFLRQY 369 (391)
T ss_pred cCCCCcHhhcCceeeecccccHHHHHHH
Confidence 555554 889999888887544444433
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=189.58 Aligned_cols=231 Identities=20% Similarity=0.132 Sum_probs=166.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+++++||||+|+||++++++|+++|++|++++|+..... .....+. ..++..+++|++|++++.++++ ++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~-~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALA-AFADALG--DARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 378999999999999999999999999999998754321 1122221 3468899999999998877665 47
Q ss_pred CEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 81 DGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|+|||+||..... ....+...+++|+.++.++++++.+. .+.++||++||..+.... .
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-~------------- 144 (257)
T PRK07074 79 DVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL-G------------- 144 (257)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC-C-------------
Confidence 9999999864321 11223455779999999999988542 245789999997433111 0
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
. ..|+.+|.+.+.+++.+++++ |++++++|||.++++...........+........ +.+++++
T Consensus 145 -~--------~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 211 (257)
T PRK07074 145 -H--------PAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKWY----PLQDFAT 211 (257)
T ss_pred -C--------cccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhcC----CCCCCCC
Confidence 0 239999999999999999775 79999999999999864332222222233222222 5678999
Q ss_pred HHHHHHHHHHhhcCC--CCCccE-EEe-cCCCCHHHHHHHHHH
Q 020747 230 IRDVVYAHIRALEVP--KASGRY-LLA-GSVAQHSDILKFLRE 268 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~-~~~-~~~~~~~e~~~~i~~ 268 (322)
++|++++++.++... ...|.+ ++. +...+.+|+++.+.+
T Consensus 212 ~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 212 PDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred HHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 999999999999753 334644 455 466779999988754
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=190.89 Aligned_cols=238 Identities=21% Similarity=0.187 Sum_probs=168.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.|++|+++||||+|+||++++++|+++|++|++++|+..... ....++... ..++.++.+|++|+++++++++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLA-AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 366799999999999999999999999999999998754321 111222111 2468889999999998887766
Q ss_pred ---CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ---GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ---~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||.....+.+.
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~------- 155 (276)
T PRK05875 83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRW------- 155 (276)
T ss_pred HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCC-------
Confidence 67999999985421 1222356788999999999998876541 3358999999844322111
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
.+.|+.+|++.|.+++.++++. +++++++|||.+.++....... ............ .
T Consensus 156 ---------------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~----~ 215 (276)
T PRK05875 156 ---------------FGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE-SPELSADYRACT----P 215 (276)
T ss_pred ---------------CcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc-CHHHHHHHHcCC----C
Confidence 1459999999999999998775 7999999999998876432211 111112222222 3
Q ss_pred CCcceeHHHHHHHHHHhhcCCCC--Cc-cEEEe-cCCC----CHHHHHHHHHHhC
Q 020747 224 PYIFVEIRDVVYAHIRALEVPKA--SG-RYLLA-GSVA----QHSDILKFLREHY 270 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~~--~g-~~~~~-~~~~----~~~e~~~~i~~~~ 270 (322)
...+++++|+++++.++++.+.. .| .+++. +..+ ++.|+++.+.+..
T Consensus 216 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 270 (276)
T PRK05875 216 LPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGAD 270 (276)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHH
Confidence 45577899999999999987542 35 56665 4443 7788877776543
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=190.78 Aligned_cols=222 Identities=16% Similarity=0.117 Sum_probs=155.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
.+|+++||||+|+||++++++|+++|++|++++|+..... ....++...+.++.++.+|++|+++++++++ .
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE-ELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3579999999999999999999999999999988653321 1222222223468889999999999887665 5
Q ss_pred CCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||..... ..+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~------------ 155 (274)
T PRK07775 88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPH------------ 155 (274)
T ss_pred CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCC------------
Confidence 79999999964321 12334566899999999999987642 14568999999844432211
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc-cHHHHHHHHcCCCCCCCCCcc
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF-GAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+.|+.+|.+.|.+++.++++. |++++++|||.+.++........ ....+....... ......+
T Consensus 156 ----------~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 223 (274)
T PRK07775 156 ----------MGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG--QARHDYF 223 (274)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc--ccccccc
Confidence 1459999999999999998775 99999999998866532211111 111111111100 0045679
Q ss_pred eeHHHHHHHHHHhhcCCCCCccEEEe
Q 020747 228 VEIRDVVYAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~~~g~~~~~ 253 (322)
+|++|+|++++.+++.+..+..|++.
T Consensus 224 ~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 224 LRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred cCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 99999999999999876433356654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=189.72 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=161.1
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. +++++++||||+|+||++++++|+++|++|++++|+..... .....+ ..++..+++|++|+++++++++
T Consensus 1 ~~~--l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 1 MMR--LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR-LAALEI---GPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCC--CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHh---CCceEEEEccCCCHHHHHHHHHHH
Confidence 664 55689999999999999999999999999999998764321 111111 2458889999999998887766
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
.+|++||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||....++.+.
T Consensus 75 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----- 149 (257)
T PRK07067 75 VERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEAL----- 149 (257)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCC-----
Confidence 57999999986432 1233466789999999999999987542 1258999999755544321
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCc--------cHHHHHH
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNF--------GAEVILN 213 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~ 213 (322)
...|+.||.+.+.+++.++.+ +|+++++++||.++++........ .......
T Consensus 150 -----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 212 (257)
T PRK07067 150 -----------------VSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRL 212 (257)
T ss_pred -----------------CchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHH
Confidence 145999999999999999875 599999999999999853321000 0001111
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
...+. +.+++.+++|+|+++++++.... ..| .++++++
T Consensus 213 ~~~~~----~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 253 (257)
T PRK07067 213 VGEAV----PLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGG 253 (257)
T ss_pred HhhcC----CCCCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence 11111 56789999999999999998642 334 6666643
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=189.69 Aligned_cols=233 Identities=16% Similarity=0.178 Sum_probs=165.2
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|...+++++++||||+|+||++++++|+++|++|++++|+++.. ....++.....++..+.+|++++++++++++
T Consensus 1 ~~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 1 MDLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD--EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTV 78 (258)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH--HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 44457789999999999999999999999999999999876543 2333333334568999999999998887775
Q ss_pred ----CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 ----GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ----~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||.... ...+.+...+++|+.++.++.+.+.+.. +.++||++||..++++.+.
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~--------- 149 (258)
T PRK08628 79 AKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGG--------- 149 (258)
T ss_pred HhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCC---------
Confidence 57999999996422 1124456789999999999999886531 3368999999866654321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGDQSFA 222 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||++.+.+++.++.+ .+++++.++||.++++...... .........+.... +
T Consensus 150 -------------~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~ 213 (258)
T PRK08628 150 -------------TSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI---P 213 (258)
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC---C
Confidence 145999999999999999875 4899999999999998532211 00011111122111 1
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecCCCCHHH
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGSVAQHSD 261 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~~~~~~e 261 (322)
....++.++|+++++++++... ..+| .+.+.+....+++
T Consensus 214 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 214 LGHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred ccccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 1135788999999999999764 3455 4455555444444
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=193.28 Aligned_cols=220 Identities=19% Similarity=0.177 Sum_probs=156.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhC------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++++++||||+|+||++++++|+++|++|++++|+.+.... ...... ....++.++.+|++|++++++ ++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQEN-LLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 34889999999999999999999999999999987644321 111111 113468999999999988765 43
Q ss_pred -CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||..... ....+.+.+++|+.++.++++.+.+. .+.++||++||..++++.+..
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~--------- 150 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGL--------- 150 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCC---------
Confidence 469999999865431 12344567889999999999986432 256799999997565543321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC----------ccHHHHHHHHc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN----------FGAEVILNLIN 216 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~----------~~~~~~~~~~~ 216 (322)
+.|+.+|.+.+.+++.++.+ +|++++++|||.++++....... ........+..
T Consensus 151 -------------~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (280)
T PRK06914 151 -------------SPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQK 217 (280)
T ss_pred -------------chhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHH
Confidence 45999999999999998743 59999999999999985332110 00111111110
Q ss_pred CCCCCC-CCCcceeHHHHHHHHHHhhcCCCCCccEEEe
Q 020747 217 GDQSFA-FPYIFVEIRDVVYAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 217 g~~~~~-~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~ 253 (322)
..+ ....+++++|+|++++.+++++.....|+++
T Consensus 218 ---~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~ 252 (280)
T PRK06914 218 ---HINSGSDTFGNPIDVANLIVEIAESKRPKLRYPIG 252 (280)
T ss_pred ---HHhhhhhccCCHHHHHHHHHHHHcCCCCCcccccC
Confidence 001 3456789999999999999987665566665
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=188.98 Aligned_cols=221 Identities=17% Similarity=0.169 Sum_probs=159.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|++.+.. .....+...+.++..+++|++|+++++++++
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA-AAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999998764321 2222222223468889999999998887775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.++||++||.....+.+.
T Consensus 87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~----------- 155 (255)
T PRK07523 87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPG----------- 155 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCC-----------
Confidence 47999999997532 1223346778899999999999987642 4578999999744322211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+.|+.+|.+.+.+++.++.+ +|++++++|||.+.++....... .......+.... +...+
T Consensus 156 -----------~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~----~~~~~ 219 (255)
T PRK07523 156 -----------IAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA-DPEFSAWLEKRT----PAGRW 219 (255)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc-CHHHHHHHHhcC----CCCCC
Confidence 145999999999999999875 49999999999999986432211 111111222222 44567
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
.+++|+|+++++++... ...| .+++.+
T Consensus 220 ~~~~dva~~~~~l~~~~~~~~~G~~i~~~g 249 (255)
T PRK07523 220 GKVEELVGACVFLASDASSFVNGHVLYVDG 249 (255)
T ss_pred cCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence 88999999999999753 3356 445543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=187.56 Aligned_cols=219 Identities=19% Similarity=0.192 Sum_probs=153.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-------CCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-------DGCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~d 81 (322)
|++|||||+|+||++++++|+++|++|++++|+..... .....+.....++..+++|++|++++++++ .++|
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAE-AAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 68999999999999999999999999999999754321 111212222346889999999999665544 3579
Q ss_pred EEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|||+|+..... ....+...++.|+.++..+++++.+. .+++++|++||..++.+.+.
T Consensus 81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~-------------- 146 (255)
T TIGR01963 81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPF-------------- 146 (255)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCC--------------
Confidence 999999865331 12224567789999999998887432 25689999999855543321
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--------ccHHHHHHHH-cCCCCC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--------FGAEVILNLI-NGDQSF 221 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~~~~~-~g~~~~ 221 (322)
.+.|+.+|.+.+.+++.++.+. +++++++||+.++++....... .....+.... .+.
T Consensus 147 --------~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (255)
T TIGR01963 147 --------KSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQ--- 215 (255)
T ss_pred --------CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccC---
Confidence 1459999999999998887653 8999999999999985321100 0000011111 111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
+.++++|++|+|++++.+++... ..| .|++++
T Consensus 216 -~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~ 250 (255)
T TIGR01963 216 -PTKRFVTVDEVAETALFLASDAAAGITGQAIVLDG 250 (255)
T ss_pred -ccccCcCHHHHHHHHHHHcCccccCccceEEEEcC
Confidence 56789999999999999997642 234 566664
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=186.84 Aligned_cols=217 Identities=19% Similarity=0.184 Sum_probs=157.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ....++.....++..+.+|++|.++++++++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAE-RVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999998754321 1112222223457889999999998876655
Q ss_pred CCCEEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 GCDGVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ~~d~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+.. +.++||++||..++.+ .
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-~--------- 152 (250)
T PRK07774 83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY-S--------- 152 (250)
T ss_pred CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC-c---------
Confidence 57999999997431 1223345678899999999999988642 3469999999844321 1
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
+.|+.||++.|.+++.+++++ ++++++++||.+.++......+ ......+.++. ..
T Consensus 153 ---------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~--~~~~~~~~~~~----~~ 211 (250)
T PRK07774 153 ---------------NFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTP--KEFVADMVKGI----PL 211 (250)
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCC--HHHHHHHHhcC----CC
Confidence 349999999999999999875 8999999999998876543211 22333334333 23
Q ss_pred CcceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 225 YIFVEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
..+.+++|++++++.++.... ..| .|++.+
T Consensus 212 ~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~ 244 (250)
T PRK07774 212 SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDG 244 (250)
T ss_pred CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence 346789999999999987642 345 566654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=190.15 Aligned_cols=234 Identities=16% Similarity=0.135 Sum_probs=161.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++.+|+.+... +...++...+.++..+++|++|+++++++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR-QAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999988764321 2222333234468889999999999887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++.+.+.
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~---------- 152 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAG---------- 152 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCC----------
Confidence 47999999996422 2233456778999999999999986421 2 468999999855543321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA--- 222 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~--- 222 (322)
.+.|+.+|.+.+.+.+.++.++ |+++++++||.+.++.......... ........ ...+
T Consensus 153 ------------~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 218 (275)
T PRK05876 153 ------------LGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRG--AACAQSSTTGSPGPLP 218 (275)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcC--cccccccccccccccc
Confidence 1459999999887777777654 8999999999998875432110000 00000000 1111
Q ss_pred CCCcceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHH
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLRE 268 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~ 268 (322)
..+++++++|+|++++.++.+++ .|++. .......+.+...+
T Consensus 219 ~~~~~~~~~dva~~~~~ai~~~~---~~~~~-~~~~~~~~~~~~~~ 260 (275)
T PRK05876 219 LQDDNLGVDDIAQLTADAILANR---LYVLP-HAASRASIRRRFER 260 (275)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC---eEEec-ChhhHHHHHHHHHH
Confidence 45678999999999999998753 45444 33344444444433
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=185.51 Aligned_cols=222 Identities=20% Similarity=0.182 Sum_probs=154.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++++|+||||+|+||++++++|+++|++|+++ .|+..+ .......+...+.++.++++|++|++++.++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQA-ADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999998775 454321 112222222223568899999999998877665
Q ss_pred -------CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -------GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -------~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||..... ..+.+...+++|+.++.++++++.+.. ..+++|++||..++.+.+.
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~------ 156 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTG------ 156 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCCC------
Confidence 489999999975331 122235677899999999999988742 3358999999854433221
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
.+.|+.+|.+.+.+++.++.+ .++++++++||.++++....... ... +.....+..
T Consensus 157 ----------------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~-~~~-~~~~~~~~~--- 215 (254)
T PRK12746 157 ----------------SIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLD-DPE-IRNFATNSS--- 215 (254)
T ss_pred ----------------CcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhcc-Chh-HHHHHHhcC---
Confidence 145999999999999988876 48999999999999986432111 111 112111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
....+++++|+++++..++..+. ..| .|++.++
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 216 VFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred CcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 33456789999999998887642 234 6666543
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=189.83 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=160.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|++|||||+|+||++++++|+++|++|++..|+...... .....+.....++..+.+|++|+++++++++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 446899999999999999999999999999888775433211 1222222224567889999999988877665
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..++.+...
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 201 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPSPT----------- 201 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCCCC-----------
Confidence 57999999996321 2334567899999999999999998742 2358999999855433221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+++.++.+ .|+++++++||.+.++..... .........+.... +...+
T Consensus 202 -----------~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~-~~~~~~~~~~~~~~----p~~r~ 265 (300)
T PRK06128 202 -----------LLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG-GQPPEKIPDFGSET----PMKRP 265 (300)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC-CCCHHHHHHHhcCC----CCCCC
Confidence 144999999999999999887 499999999999999864321 11122222222222 44567
Q ss_pred eeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
.+++|++.++++++.... ..| .++++++
T Consensus 266 ~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg 296 (300)
T PRK06128 266 GQPVEMAPLYVLLASQESSYVTGEVFGVTGG 296 (300)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEeeCCC
Confidence 799999999999987532 345 4555543
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=191.29 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=145.8
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh------CC-CCE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV------DG-CDG 82 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~~-~d~ 82 (322)
+|+||||||+||++++++|+++|++|++++|+++... ...++.+.+|++|++.+.+++ ++ +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA----------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc----------CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4899999999999999999999999999999876432 124567789999999999988 57 999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
|+|+++.... ......+++++|++. |+++||++||.....+..
T Consensus 71 v~~~~~~~~~------------~~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~~~------------------------ 113 (285)
T TIGR03649 71 VYLVAPPIPD------------LAPPMIKFIDFARSK-GVRRFVLLSASIIEKGGP------------------------ 113 (285)
T ss_pred EEEeCCCCCC------------hhHHHHHHHHHHHHc-CCCEEEEeeccccCCCCc------------------------
Confidence 9999864211 123456899999998 999999999863221100
Q ss_pred hhHHHHHHHHHHHHHHHHHH-cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC---CC-CCCcceeHHHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKE-NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS---FA-FPYIFVEIRDVVYAH 237 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~---~~-~~~~~i~~~D~a~~~ 237 (322)
.+...|+.++ + .|++++++||+.++........ ...+..+..+ .+ ..++|+|++|+|+++
T Consensus 114 -----~~~~~~~~l~----~~~gi~~tilRp~~f~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~ 178 (285)
T TIGR03649 114 -----AMGQVHAHLD----SLGGVEYTVLRPTWFMENFSEEFH------VEAIRKENKIYSATGDGKIPFVSADDIARVA 178 (285)
T ss_pred -----hHHHHHHHHH----hccCCCEEEEeccHHhhhhccccc------ccccccCCeEEecCCCCccCcccHHHHHHHH
Confidence 1112333332 3 4999999999998865421110 0111111111 12 778999999999999
Q ss_pred HHhhcCCCC-CccEEEe-cCCCCHHHHHHHHHHhCCC
Q 020747 238 IRALEVPKA-SGRYLLA-GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 238 ~~~~~~~~~-~g~~~~~-~~~~~~~e~~~~i~~~~~~ 272 (322)
..++.++.. ++.|++. ++.+|++|+++.+.+.+|.
T Consensus 179 ~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~ 215 (285)
T TIGR03649 179 YRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGR 215 (285)
T ss_pred HHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCC
Confidence 999987643 4577655 5899999999999999874
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=188.10 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=155.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++++++||||+|+||++++++|+++|++|++++|+.+... +...... ..++..+.+|++|++++..+++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~-~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALA-ATAARLP--GAKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHh--cCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 366799999999999999999999999999999999754321 1111111 1257889999999998877664
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCc-cEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSI-KRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~-~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+.+.++.|+.++.++++++.+. .+. ++|+++||..+..+.+..
T Consensus 85 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~------- 157 (264)
T PRK12829 85 GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGR------- 157 (264)
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCC-------
Confidence 68999999997522 122345688999999999999987542 133 578888887554433210
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--------cHHHHHHHHc
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--------GAEVILNLIN 216 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~~~~ 216 (322)
..|+.+|.+.+.+++.++.+. +++++++|||.++|+........ ..........
T Consensus 158 ---------------~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (264)
T PRK12829 158 ---------------TPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLE 222 (264)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHh
Confidence 349999999999999998764 89999999999999864321110 0001111111
Q ss_pred CCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 217 GDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 217 g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
.. ....+++++|+++++..++... ...| .|++++
T Consensus 223 ~~----~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~ 259 (264)
T PRK12829 223 KI----SLGRMVEPEDIAATALFLASPAARYITGQAISVDG 259 (264)
T ss_pred cC----CCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCC
Confidence 11 3456899999999999988642 2345 455554
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=183.56 Aligned_cols=215 Identities=14% Similarity=0.053 Sum_probs=158.1
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||...+++|+++||||+|+||++++++|+++|++|++++|+.. . ....++..+++|++|+++++++++
T Consensus 1 ~~~~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~-------~---~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (252)
T PRK08220 1 MNAMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFL-------T---QEDYPFATFVLDVSDAAAVAQVCQRL 70 (252)
T ss_pred CCccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchh-------h---hcCCceEEEEecCCCHHHHHHHHHHH
Confidence 5665677899999999999999999999999999999998751 1 113467889999999998888776
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..+..+...
T Consensus 71 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~------ 144 (252)
T PRK08220 71 LAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIG------ 144 (252)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCC------
Confidence 37999999997532 1233456789999999999999986431 4468999999844332211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCcc--H-----HHHHHHH
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFG--A-----EVILNLI 215 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~--~-----~~~~~~~ 215 (322)
.+.|+.+|.+.+.+++.++.+ +|+++++++||.++++......... . .......
T Consensus 145 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (252)
T PRK08220 145 ----------------MAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFK 208 (252)
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHh
Confidence 145999999999999999887 6999999999999998643211100 0 0011111
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
.+. +...+++++|+|+++++++... ...|..+
T Consensus 209 ~~~----~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i 242 (252)
T PRK08220 209 LGI----PLGKIARPQEIANAVLFLASDLASHITLQDI 242 (252)
T ss_pred hcC----CCcccCCHHHHHHHHHHHhcchhcCccCcEE
Confidence 111 4567899999999999999753 3445443
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=175.46 Aligned_cols=208 Identities=18% Similarity=0.164 Sum_probs=159.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-C-CcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-T-ERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.++|.++||||++.||.++++.|.+.|++|++..|+.++ ++++... . ..+..+..|++|+++++++++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~dr-----L~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREER-----LEALADEIGAGAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHH-----HHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999999999999998744 3333221 1 468899999999988666555
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...++|+.++++|+.|.++..++..+.+ +.++||++||.++.+..+..
T Consensus 79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~-------- 150 (246)
T COG4221 79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGG-------- 150 (246)
T ss_pred hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCC--------
Confidence 58999999996432 3455788999999999999999987652 44699999999777655542
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC-CccHHHHHHHHcCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL-NFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 224 (322)
+.|+.+|+++..+...+.++. +++++.+.||.|-+.....-. ........+... .
T Consensus 151 --------------~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~-------~ 209 (246)
T COG4221 151 --------------AVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYK-------G 209 (246)
T ss_pred --------------ccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhc-------c
Confidence 569999999999999998875 899999999999664322111 111112222222 2
Q ss_pred CcceeHHHHHHHHHHhhcCCCCC
Q 020747 225 YIFVEIRDVVYAHIRALEVPKAS 247 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~~ 247 (322)
..++.++|+|+++.++++.|..-
T Consensus 210 ~~~l~p~dIA~~V~~~~~~P~~v 232 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQPQHV 232 (246)
T ss_pred CCCCCHHHHHHHHHHHHhCCCcc
Confidence 45678999999999999998643
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=187.20 Aligned_cols=214 Identities=21% Similarity=0.235 Sum_probs=152.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+|+||++++++|+++|++|++++|+.+.. ..+.. .+++.+.+|++|+++++++++ +
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l-----~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKM-----EDLAS--LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHh--CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999999999876332 22211 247889999999999888776 6
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHH----hhcCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSC----AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
+|+|||+||.... ...+.+...+++|+.++..+++.+ ++. +.+++|++||..+..+.+.
T Consensus 75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~~----------- 142 (273)
T PRK06182 75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ-RSGRIINISSMGGKIYTPL----------- 142 (273)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcchhhcCCCCC-----------
Confidence 8999999996432 123346778999999976666654 443 5679999999744322221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCC---------CccHHH----HHHH
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPIL---------NFGAEV----ILNL 214 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~---------~~~~~~----~~~~ 214 (322)
...|+.+|.+.+.+.+.++.+ +|++++++|||.+.++...... ...... ...+
T Consensus 143 -----------~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (273)
T PRK06182 143 -----------GAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASM 211 (273)
T ss_pred -----------ccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHH
Confidence 145999999999998888755 4899999999999988532110 000000 0011
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCccEEEec
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAG 254 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~ 254 (322)
.... ....+.+++|+|++++.++........|+++.
T Consensus 212 ~~~~----~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~ 247 (273)
T PRK06182 212 RSTY----GSGRLSDPSVIADAISKAVTARRPKTRYAVGF 247 (273)
T ss_pred HHhh----ccccCCCHHHHHHHHHHHHhCCCCCceeecCc
Confidence 1111 34557799999999999998755445666553
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=187.00 Aligned_cols=218 Identities=18% Similarity=0.137 Sum_probs=156.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|++.+.. ....++.....++..+.+|++|+++++++++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD-EVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999998764321 2222222223568899999999998876664
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.++..+++++.+.+ ..++||++||..+..+.+.
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~----------- 150 (258)
T PRK07890 82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPK----------- 150 (258)
T ss_pred CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCC-----------
Confidence 57999999986432 2234456789999999999999997642 2258999999855433221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--------ccHHHHHHHHcCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--------FGAEVILNLINGDQ 219 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~~~~~~g~~ 219 (322)
...|+.+|.+.+.+++.++.++ +++++++|||.++++....... .............
T Consensus 151 -----------~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (258)
T PRK07890 151 -----------YGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANS- 218 (258)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcC-
Confidence 1459999999999999998764 8999999999999986432111 0011111111111
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
....+.+++|++++++++++.. ..+|..
T Consensus 219 ---~~~~~~~~~dva~a~~~l~~~~~~~~~G~~ 248 (258)
T PRK07890 219 ---DLKRLPTDDEVASAVLFLASDLARAITGQT 248 (258)
T ss_pred ---CccccCCHHHHHHHHHHHcCHhhhCccCcE
Confidence 3345788999999999999752 344543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=182.03 Aligned_cols=228 Identities=22% Similarity=0.257 Sum_probs=157.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhh-CCCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAV-DGCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~-~~~d~vi 84 (322)
.+|+|+||||||+||++++++|+++||+|+++.|+.++.. .......+++++++|++|. +.+.+.+ .++|+||
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-----~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK-----TSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH-----HhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 4589999999999999999999999999999998864321 1111124688999999984 5677777 6899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
|+++.... . .....+++|..++.++++++++. ++++||++||. ++|+... ..+..+... . ......
T Consensus 91 ~~~g~~~~--~-~~~~~~~~n~~~~~~ll~a~~~~-~~~~iV~iSS~-~v~g~~~----~~~~~~~~~--~---~~~~~~ 156 (251)
T PLN00141 91 CATGFRRS--F-DPFAPWKVDNFGTVNLVEACRKA-GVTRFILVSSI-LVNGAAM----GQILNPAYI--F---LNLFGL 156 (251)
T ss_pred ECCCCCcC--C-CCCCceeeehHHHHHHHHHHHHc-CCCEEEEEccc-cccCCCc----ccccCcchh--H---HHHHHH
Confidence 99875321 1 12344678999999999999987 88999999999 5555322 111111100 0 001133
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
|..+|..+|++++ +.+++++++|||.++++...... . ...+.. ....+++.+|+|++++.++.++
T Consensus 157 ~~~~k~~~e~~l~----~~gi~~~iirpg~~~~~~~~~~~--~------~~~~~~---~~~~~i~~~dvA~~~~~~~~~~ 221 (251)
T PLN00141 157 TLVAKLQAEKYIR----KSGINYTIVRPGGLTNDPPTGNI--V------MEPEDT---LYEGSISRDQVAEVAVEALLCP 221 (251)
T ss_pred HHHHHHHHHHHHH----hcCCcEEEEECCCccCCCCCceE--E------ECCCCc---cccCcccHHHHHHHHHHHhcCh
Confidence 5567888887765 45999999999999986422110 0 000100 2235799999999999999886
Q ss_pred CCCc-cE-EEe---cCCCCHHHHHHHHHH
Q 020747 245 KASG-RY-LLA---GSVAQHSDILKFLRE 268 (322)
Q Consensus 245 ~~~g-~~-~~~---~~~~~~~e~~~~i~~ 268 (322)
...+ ++ +++ +...++.++...+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 222 ESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred hhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 6443 45 333 235789999888765
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=184.47 Aligned_cols=218 Identities=20% Similarity=0.168 Sum_probs=158.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
|++|+|+||||+|+||++++++|+++|++|++++|++.+.. .....+.....++.++.+|++|++++.++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE-ALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999999864432 1122222234568899999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+.+.++.|+.++.++++++.+. .+.++||++||..+.++...
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~----------- 150 (246)
T PRK05653 82 ALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPG----------- 150 (246)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCC-----------
Confidence 36999999987433 122234567899999999999998532 25689999999855543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHH-HHcCCCCCCCCCc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILN-LINGDQSFAFPYI 226 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 226 (322)
...|+.+|.+.+.+++.++++ .+++++++|||.++++..... ...... ..... ....
T Consensus 151 -----------~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~----~~~~~~~~~~~~----~~~~ 211 (246)
T PRK05653 151 -----------QTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGL----PEEVKAEILKEI----PLGR 211 (246)
T ss_pred -----------CcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhh----hHHHHHHHHhcC----CCCC
Confidence 145999999999999998865 389999999999999875321 111111 11111 4467
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 227 FVEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
+++++|+++++..++.... .+| .+.+.+
T Consensus 212 ~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 242 (246)
T PRK05653 212 LGQPEEVANAVAFLASDAASYITGQVIPVNG 242 (246)
T ss_pred CcCHHHHHHHHHHHcCchhcCccCCEEEeCC
Confidence 8899999999999997532 245 445554
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=183.49 Aligned_cols=218 Identities=19% Similarity=0.171 Sum_probs=157.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++. .+.++..+++|++|+++++++++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAE-RVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHH-HHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999998754321 2222222 23568899999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+...+++|+.++.++.+++.+. .+.++||++||..+.++....
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~---------- 150 (252)
T PRK06138 81 RLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGR---------- 150 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCc----------
Confidence 68999999997532 122334567899999998888876532 156799999998666544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHcCCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--GAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~~~ 225 (322)
+.|+.+|.+.+.+++.++.++ |++++++|||.++++........ ....+.....+.. ...
T Consensus 151 ------------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 215 (252)
T PRK06138 151 ------------AAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARH---PMN 215 (252)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcC---CCC
Confidence 459999999999999998775 89999999999999864322111 1111222222111 233
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccE
Q 020747 226 IFVEIRDVVYAHIRALEVPK--ASGRY 250 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~--~~g~~ 250 (322)
.+++++|+++++++++.++. ..|.+
T Consensus 216 ~~~~~~d~a~~~~~l~~~~~~~~~g~~ 242 (252)
T PRK06138 216 RFGTAEEVAQAALFLASDESSFATGTT 242 (252)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCE
Confidence 47899999999999998753 34544
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=181.10 Aligned_cols=220 Identities=18% Similarity=0.187 Sum_probs=157.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||||+||+++++.|+++|++|+++.|+..+.......++.....++..+.+|+++++++.++++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999998888865432222222222224578899999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.. +.++||++||..++++....
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~---------- 152 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQ---------- 152 (248)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCC----------
Confidence 57999999986432 1223345678899999999999987641 44689999998666654321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.+|.+.+.+++.++++. +++++++|||.+.++..... ............ ....+
T Consensus 153 ------------~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~---~~~~~~~~~~~~----~~~~~ 213 (248)
T PRK05557 153 ------------ANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL---PEDVKEAILAQI----PLGRL 213 (248)
T ss_pred ------------chhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc---ChHHHHHHHhcC----CCCCC
Confidence 459999999999998887653 89999999999877654322 122222223222 33457
Q ss_pred eeHHHHHHHHHHhhcC--CCCCc-cEEEec
Q 020747 228 VEIRDVVYAHIRALEV--PKASG-RYLLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~--~~~~g-~~~~~~ 254 (322)
.+++|+++++..++.. ....| .+++.+
T Consensus 214 ~~~~~va~~~~~l~~~~~~~~~g~~~~i~~ 243 (248)
T PRK05557 214 GQPEEIASAVAFLASDEAAYITGQTLHVNG 243 (248)
T ss_pred cCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence 8999999999998865 23345 455553
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=182.32 Aligned_cols=218 Identities=17% Similarity=0.128 Sum_probs=157.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+... .....+.....++..+.+|+++++++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPS---ETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHH---HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567999999999999999999999999999999986421 1112222223568899999999998876654
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CC-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HS-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... .....+.+.+++|+.++.++++++.+. .+ .+++|++||..++.+...
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~---------- 149 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIR---------- 149 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCC----------
Confidence 58999999997532 122345677899999999999998653 12 468999999855432221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.+|++.+.+++.++++. |+++++++||.+.++....... ............ +...
T Consensus 150 ------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~~~ 212 (248)
T TIGR01832 150 ------------VPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRA-DEDRNAAILERI----PAGR 212 (248)
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhcccc-ChHHHHHHHhcC----CCCC
Confidence 0349999999999999999885 8999999999999885432111 111111112111 4457
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
++.++|+|+++++++... ...|.++..
T Consensus 213 ~~~~~dva~~~~~l~s~~~~~~~G~~i~~ 241 (248)
T TIGR01832 213 WGTPDDIGGPAVFLASSASDYVNGYTLAV 241 (248)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCcEEEe
Confidence 889999999999999753 245666444
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=185.78 Aligned_cols=219 Identities=15% Similarity=0.105 Sum_probs=155.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-C-CCcEEEEEccCCCccchHHhhC-------
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-A-TERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+|+|+||||+|+||++++++|+++|++|++++|+...... ....+.. . ..++..+.+|++|++++.++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAAN-VAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999999999999987543211 1111111 1 1468899999999988876654
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ + ..++|++||..+.++...
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~---------- 150 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKH---------- 150 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCC----------
Confidence 57999999986432 1223456778999999998888876631 3 358999999755543321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHH-----------HHHHH
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEV-----------ILNLI 215 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~-----------~~~~~ 215 (322)
...|+.||++.+.+++.++.+ +|++++++|||.++++..... ..... .....
T Consensus 151 ------------~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 216 (259)
T PRK12384 151 ------------NSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS--LLPQYAKKLGIKPDEVEQYYI 216 (259)
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh--hhHHHHHhcCCChHHHHHHHH
Confidence 145999999999999998864 599999999999887643221 11111 11111
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
.+. +.+.+++++|++++++.++.... ..| .|+++++
T Consensus 217 ~~~----~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g 255 (259)
T PRK12384 217 DKV----PLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255 (259)
T ss_pred HhC----cccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence 121 56788999999999999987542 345 5666654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=183.54 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=159.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||++++++|+++|++|++++|+..... .....+.. ..++.++++|++|+++++++++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAE-RVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999864432 11122221 3458899999999999987765
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++.+.+. .+.++||++||..++.+.+.
T Consensus 81 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 150 (251)
T PRK07231 81 SVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPG---------- 150 (251)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCC----------
Confidence 46999999986432 123345678999999999988887753 25678999999866543322
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC-ccHHHHHHHHcCCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN-FGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.+|.+.+.+++.++.++ ++++++++||.+.++....... ........+..+. +..
T Consensus 151 ------------~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~----~~~ 214 (251)
T PRK07231 151 ------------LGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI----PLG 214 (251)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC----CCC
Confidence 1459999999999999988764 8999999999998775332211 0112222222222 455
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 020747 226 IFVEIRDVVYAHIRALEVPK--ASGRY-LLAG 254 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~--~~g~~-~~~~ 254 (322)
.+++++|+|++++.++..+. ..|.+ .+.+
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g 246 (251)
T PRK07231 215 RLGTPEDIANAALFLASDEASWITGVTLVVDG 246 (251)
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCeEEECC
Confidence 67899999999999997643 34655 4443
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=180.77 Aligned_cols=217 Identities=19% Similarity=0.144 Sum_probs=156.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh---hhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT---EHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|...+... +...+......++.++.+|++|+++++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998775332211 1112222224578899999999998887764
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHh-----hcCCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCA-----KVHSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~-----~~~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++. +. +.+++|++||..++++....
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~~----- 157 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVNIASVAGVRGNRGQ----- 157 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEEECCchhcCCCCCC-----
Confidence 58999999997542 1223356788999999999999998 33 55789999998666543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
..|+.+|.+.+.+++.++.+. +++++++|||.+.++....... . .......
T Consensus 158 -----------------~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~--~---~~~~~~~---- 211 (249)
T PRK12827 158 -----------------VNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAP--T---EHLLNPV---- 211 (249)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccch--H---HHHHhhC----
Confidence 459999999999999988764 8999999999999986443211 1 1112211
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
....+.+++|++++++.++... ...|.+ .+.+
T Consensus 212 ~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 246 (249)
T PRK12827 212 PVQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDG 246 (249)
T ss_pred CCcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 2233558999999999988653 233544 4443
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=183.37 Aligned_cols=220 Identities=19% Similarity=0.142 Sum_probs=153.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+++++||||+|+||++++++|+++|++|++..++...........+...+.++.++++|++|.++++++++ .+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999988776543221111222222223457889999999998887765 57
Q ss_pred CEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC------ccEEEEecchhhhccCCCCCCCCcccc
Q 020747 81 DGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS------IKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 81 d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
|+|||+||.... ...+.+...+++|+.++.++++++.+.+. .+++|++||..++++.+..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~-------- 153 (248)
T PRK06123 82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGE-------- 153 (248)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCC--------
Confidence 999999997532 12223457899999999999988876421 2469999998666654320
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.+|++.+.+++.++.+. |++++++|||.++|+...... ............ +..
T Consensus 154 -------------~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~--~~~~~~~~~~~~----p~~ 214 (248)
T PRK06123 154 -------------YIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG--EPGRVDRVKAGI----PMG 214 (248)
T ss_pred -------------ccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC--CHHHHHHHHhcC----CCC
Confidence 0239999999999999998875 899999999999998643211 122222222211 222
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
.+.+++|+++++++++... ...| .|++.+
T Consensus 215 ~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g 246 (248)
T PRK06123 215 RGGTAEEVARAILWLLSDEASYTTGTFIDVSG 246 (248)
T ss_pred CCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence 3457999999999998754 2345 555543
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=182.34 Aligned_cols=208 Identities=16% Similarity=0.089 Sum_probs=151.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++++|+++||||+|+||++++++|+++|++|++++|+..+.. +..... ..++.++++|++++++++++++
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~-~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS-KVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999988653321 111111 2457889999999988765544
Q ss_pred -CCCEEEEcccCcccC-------CCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIFL-------SDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~~-------~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||..... ..+.+...+++|+.++.++++++.+.+ ..+++|++||..++++.+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~-------- 154 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDT-------- 154 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCC--------
Confidence 479999999975321 223356789999999999999997531 23689999998665543321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
+.|+.+|++.+.+++.++.++ ++++++++||.+.++....... . .+........ ....
T Consensus 155 --------------~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~--~-~~~~~~~~~~---~~~~ 214 (255)
T PRK05717 155 --------------EAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRA--E-PLSEADHAQH---PAGR 214 (255)
T ss_pred --------------cchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccc--h-HHHHHHhhcC---CCCC
Confidence 459999999999999999886 5899999999999975322111 1 1111111110 2345
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020747 227 FVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~ 244 (322)
+.+++|++.++.+++...
T Consensus 215 ~~~~~~va~~~~~l~~~~ 232 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRQ 232 (255)
T ss_pred CcCHHHHHHHHHHHcCch
Confidence 678999999999998753
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=182.53 Aligned_cols=220 Identities=19% Similarity=0.176 Sum_probs=153.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.+++++||||+|+||++++++|+++|++|+++ .|+... ..+...++...+.++.++.+|++|++++.++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA-AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999999998764 554322 112222222224568889999999998887766
Q ss_pred CCCEEEEcccCccc--C---CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF--L---SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~--~---~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... . ..+.+...+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----------- 150 (250)
T PRK08063 82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLEN----------- 150 (250)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCC-----------
Confidence 47999999986432 1 12233456789999999999998764 24569999999755433221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.+ .|+++++++||.+.++..... .............. ....+
T Consensus 151 -----------~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~-~~~~~~~~~~~~~~----~~~~~ 214 (250)
T PRK08063 151 -----------YTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHF-PNREELLEDARAKT----PAGRM 214 (250)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhc-cCchHHHHHHhcCC----CCCCC
Confidence 145999999999999999876 489999999999988764321 11112222222111 23457
Q ss_pred eeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 228 VEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
++++|++++++.++.++. ..| .+++.+
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 244 (250)
T PRK08063 215 VEPEDVANAVLFLCSPEADMIRGQTIIVDG 244 (250)
T ss_pred cCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 899999999999997643 345 445544
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=176.54 Aligned_cols=183 Identities=32% Similarity=0.459 Sum_probs=140.8
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcccCc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASPV 90 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~ 90 (322)
|+|+||||++|++++++|+++|++|+++.|++++.. . ..+++++.+|+.|++++.++++++|+|||+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~-----~----~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE-----D----SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH-----H----CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc-----c----ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 799999999999999999999999999999875432 1 3679999999999999999999999999999653
Q ss_pred ccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHH
Q 020747 91 IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKT 170 (322)
Q Consensus 91 ~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~ 170 (322)
.. ....+.+++++|++. +++++|++||. .++.... .....+.. +.+ ..|...|.
T Consensus 72 ~~------------~~~~~~~~~~a~~~~-~~~~~v~~s~~-~~~~~~~----~~~~~~~~---~~~-----~~~~~~~~ 125 (183)
T PF13460_consen 72 PK------------DVDAAKNIIEAAKKA-GVKRVVYLSSA-GVYRDPP----GLFSDEDK---PIF-----PEYARDKR 125 (183)
T ss_dssp TT------------HHHHHHHHHHHHHHT-TSSEEEEEEET-TGTTTCT----SEEEGGTC---GGG-----HHHHHHHH
T ss_pred cc------------ccccccccccccccc-ccccceeeecc-ccCCCCC----cccccccc---cch-----hhhHHHHH
Confidence 22 288899999999998 89999999999 5554332 11111111 110 34889999
Q ss_pred HHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC
Q 020747 171 LAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 171 ~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.+|+.++ +.+++++++||+.+||+..... ..... .+. ...++||.+|+|++++.++++
T Consensus 126 ~~e~~~~----~~~~~~~ivrp~~~~~~~~~~~-~~~~~------~~~----~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 126 EAEEALR----ESGLNWTIVRPGWIYGNPSRSY-RLIKE------GGP----QGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHHHHHH----HSTSEEEEEEESEEEBTTSSSE-EEESS------TST----TSHCEEEHHHHHHHHHHHHH-
T ss_pred HHHHHHH----hcCCCEEEEECcEeEeCCCcce-eEEec------cCC----CCcCcCCHHHHHHHHHHHhCC
Confidence 9988874 5599999999999999874321 11100 112 567999999999999998864
|
... |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-24 Score=185.66 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=160.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+...........+...+.++.++.+|++|.++++++++
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999998875432212222222223568889999999998877765
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..++.+.+..
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~~~----------- 192 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNETL----------- 192 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCCCc-----------
Confidence 57999999996422 1123446789999999999999998742 23589999998555433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.+|.+.+.+++.++.++ |+++++++||.++++...... .......+.... ....+.
T Consensus 193 -----------~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~--~~~~~~~~~~~~----~~~~~~ 255 (290)
T PRK06701 193 -----------IDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDF--DEEKVSQFGSNT----PMQRPG 255 (290)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccccc--CHHHHHHHHhcC----CcCCCc
Confidence 349999999999999999875 899999999999998643321 112222222222 456688
Q ss_pred eHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 020747 229 EIRDVVYAHIRALEVPK--ASGR-YLLAG 254 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~--~~g~-~~~~~ 254 (322)
+++|+|+++++++.... ..|. +.+.+
T Consensus 256 ~~~dva~~~~~ll~~~~~~~~G~~i~idg 284 (290)
T PRK06701 256 QPEELAPAYVFLASPDSSYITGQMLHVNG 284 (290)
T ss_pred CHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 99999999999997642 3563 34444
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-24 Score=185.09 Aligned_cols=222 Identities=14% Similarity=0.074 Sum_probs=157.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhh-ccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRE-LDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++.+|+......+.+.+ ....+.++..+.+|++|+++++++++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999998877543322222221 11223467889999999988776654
Q ss_pred -CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||... ....+.+.+.+++|+.++.++++++.+.+ ..++||++||..++.+.+.
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~~~----------- 195 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPH----------- 195 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCCCC-----------
Confidence 5799999998532 12344567889999999999999998742 2258999999855543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|++.+.+++.++.+ +|+++++++||.|.++...... ........+.... +...+
T Consensus 196 -----------~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~-~~~~~~~~~~~~~----~~~r~ 259 (294)
T PRK07985 196 -----------LLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG-QTQDKIPQFGQQT----PMKRA 259 (294)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccC-CCHHHHHHHhccC----CCCCC
Confidence 045999999999999999887 4999999999999998642211 1111222222221 33456
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
..++|+|+++++++... ...|.. .+.+
T Consensus 260 ~~pedva~~~~fL~s~~~~~itG~~i~vdg 289 (294)
T PRK07985 260 GQPAELAPVYVYLASQESSYVTAEVHGVCG 289 (294)
T ss_pred CCHHHHHHHHHhhhChhcCCccccEEeeCC
Confidence 78999999999999753 334533 4443
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-24 Score=181.30 Aligned_cols=224 Identities=17% Similarity=0.099 Sum_probs=160.6
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. +++|+++||||+|+||++++++|+++|++|++++|+.... ....++.++++|++++++++++++
T Consensus 1 ~~~--~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~ 69 (252)
T PRK07856 1 NLD--LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET---------VDGRPAEFHAADVRDPDQVAALVDAI 69 (252)
T ss_pred CCC--CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh---------hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 454 5679999999999999999999999999999999876431 013467889999999998887765
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|+|||+||.... .....+.+.+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 70 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~----- 144 (252)
T PRK07856 70 VERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPG----- 144 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCC-----
Confidence 46999999986432 2233456789999999999999986531 3368999999855543321
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
.+.|+.+|.+.+.+++.++.++ .++++.++||.+.++....... ............
T Consensus 145 -----------------~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~---- 202 (252)
T PRK07856 145 -----------------TAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYG-DAEGIAAVAATV---- 202 (252)
T ss_pred -----------------CchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhcc-CHHHHHHHhhcC----
Confidence 1459999999999999999875 4899999999998875332111 111122222222
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEEecCCCCHHHH
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGSVAQHSDI 262 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~~~~e~ 262 (322)
+...+..++|+++++++++... ..+|..+..++....-.+
T Consensus 203 ~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~~~~ 244 (252)
T PRK07856 203 PLGRLATPADIAWACLFLASDLASYVSGANLEVHGGGERPAF 244 (252)
T ss_pred CCCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcchHHH
Confidence 3345678999999999998753 356655444444443333
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=181.73 Aligned_cols=217 Identities=17% Similarity=0.126 Sum_probs=150.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 78 (322)
++|+++||||+|+||++++++|+++|++|++..++..+...+...++...+.++..+.+|+++.++++.+++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 468999999999999999999999999998875432221112222232224457788999999876654332
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|++||+||.... ...+.++..+++|+.++..+++++.+.+ ..++||++||..+..+.+.
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 154 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPD-------- 154 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCC--------
Confidence 58999999996422 1222356788899999999999887753 2359999999855433221
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||++.+.+++.++.++ |+++++++||.|.++....... .. .......... +.
T Consensus 155 --------------~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~-~~~~~~~~~~---~~ 215 (252)
T PRK12747 155 --------------FIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DP-MMKQYATTIS---AF 215 (252)
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CH-HHHHHHHhcC---cc
Confidence 1459999999999999998775 8999999999999986432111 11 1111111100 33
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
..+.+++|+|+++.+++... ...|..
T Consensus 216 ~~~~~~~dva~~~~~l~s~~~~~~~G~~ 243 (252)
T PRK12747 216 NRLGEVEDIADTAAFLASPDSRWVTGQL 243 (252)
T ss_pred cCCCCHHHHHHHHHHHcCccccCcCCcE
Confidence 55789999999999998753 245644
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=181.25 Aligned_cols=221 Identities=15% Similarity=0.131 Sum_probs=156.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++++++||||+|+||++++++|+++|++|++++|+..... +....+.....++.++.+|++|.++++++++ .
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAE-KVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5689999999999999999999999999999988764321 1112222223568899999999998887765 5
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... .....+.+.+++|+.++.++++++.+. .+.+++|++||..++.+....
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~~----------- 149 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGE----------- 149 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCCC-----------
Confidence 8999999986422 112234567999999999998887642 155789999998665443221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC---ccHHHHHHHHcCCCCCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN---FGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~---~~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.+|++.+.+++.++.+. +++++++|||.++++....... .....+..+.... ...
T Consensus 150 -----------~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 214 (250)
T TIGR03206 150 -----------AVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAI----PLG 214 (250)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcC----Ccc
Confidence 459999999999999998774 8999999999999885322110 0111222222222 334
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 226 IFVEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
.+..++|+|+++..++.... ..| .+.+.+
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 246 (250)
T TIGR03206 215 RLGQPDDLPGAILFFSSDDASFITGQVLSVSG 246 (250)
T ss_pred CCcCHHHHHHHHHHHcCcccCCCcCcEEEeCC
Confidence 46789999999999987642 345 444443
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=181.36 Aligned_cols=216 Identities=19% Similarity=0.174 Sum_probs=157.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 82 (322)
+++++++||||+|+||+++++.|+++|++|++++|+..+. +.+... .....+.+|+++++.++++++ .+|+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~--~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAAL--DRLAGE----TGCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHH----hCCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 5678999999999999999999999999999999875332 111111 125678899999988888776 4899
Q ss_pred EEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 83 VFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 83 vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
|||+||.... .....+.+.+++|+.++.++++++.+.. + .++||++||..++++....
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------- 147 (245)
T PRK07060 81 LVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDH------------- 147 (245)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCC-------------
Confidence 9999986432 1223456778899999999999987641 1 3689999998665543221
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
..|+.+|.+++.+++.+++++ +++++.+|||.++++........ ......+.... ....++++
T Consensus 148 ---------~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~ 213 (245)
T PRK07060 148 ---------LAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD-PQKSGPMLAAI----PLGRFAEV 213 (245)
T ss_pred ---------cHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC-HHHHHHHHhcC----CCCCCCCH
Confidence 459999999999999998764 89999999999999864322111 11111222222 45678999
Q ss_pred HHHHHHHHHhhcCCC--CCccE-EEec
Q 020747 231 RDVVYAHIRALEVPK--ASGRY-LLAG 254 (322)
Q Consensus 231 ~D~a~~~~~~~~~~~--~~g~~-~~~~ 254 (322)
+|++++++.++..+. ..|.+ ++.+
T Consensus 214 ~d~a~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK07060 214 DDVAAPILFLLSDAASMVSGVSLPVDG 240 (245)
T ss_pred HHHHHHHHHHcCcccCCccCcEEeECC
Confidence 999999999997643 34644 4443
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=180.63 Aligned_cols=209 Identities=20% Similarity=0.170 Sum_probs=151.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...+. ..++.++++|++|.+++..+++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE-AARAEL---GESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999988643211 111111 3467889999999887765544
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ...++|++||..+.++.+..
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~~------------ 147 (249)
T PRK06500 80 RLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPNS------------ 147 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCCc------------
Confidence 57999999986432 2234556789999999999999998631 23578888887566554321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC--C-ccHHHHHHHHcCCCCCCCCCc
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL--N-FGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~ 226 (322)
+.|+.+|.+.|.+++.++.+. |++++++|||.+++|...... . ........+..+. +...
T Consensus 148 ----------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 213 (249)
T PRK06500 148 ----------SVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALV----PLGR 213 (249)
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcC----CCCC
Confidence 459999999999999988764 899999999999998532110 1 1112222222222 2233
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020747 227 FVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~ 244 (322)
+..++|+++++.+++..+
T Consensus 214 ~~~~~~va~~~~~l~~~~ 231 (249)
T PRK06500 214 FGTPEEIAKAVLYLASDE 231 (249)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 568999999999998753
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=183.58 Aligned_cols=209 Identities=22% Similarity=0.199 Sum_probs=153.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+++|+||||+|+||++++++|+++|++|++++|+...... ..+++++++|++|+++++++++ .+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999997643211 2357889999999999888776 36
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|+|||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------- 141 (270)
T PRK06179 75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPY------------- 141 (270)
T ss_pred CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCC-------------
Confidence 999999997532 122345678999999999999986432 26789999999855543221
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCc---cH--HH----HHHHHcCCCC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNF---GA--EV----ILNLINGDQS 220 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~---~~--~~----~~~~~~g~~~ 220 (322)
...|+.+|.+.+.+++.++.+ .|+++++++||.+.++........ .. .. .......
T Consensus 142 ---------~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 209 (270)
T PRK06179 142 ---------MALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAK--- 209 (270)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHh---
Confidence 145999999999999988766 499999999999998864322110 00 00 0011100
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCCCCCccEEE
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVPKASGRYLL 252 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~ 252 (322)
.......++|+++.++.++..+...-.|..
T Consensus 210 --~~~~~~~~~~va~~~~~~~~~~~~~~~~~~ 239 (270)
T PRK06179 210 --AVKKADAPEVVADTVVKAALGPWPKMRYTA 239 (270)
T ss_pred --ccccCCCHHHHHHHHHHHHcCCCCCeeEec
Confidence 223346789999999999987654445654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=180.17 Aligned_cols=221 Identities=24% Similarity=0.186 Sum_probs=159.7
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||+. +++|+++||||+|+||++++++|+++|++|++++|++.... .....+.....++..+++|++|+++++++++
T Consensus 1 ~~~~-~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 1 MASN-LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAR-ELAAALEAAGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCC-CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5543 56799999999999999999999999999999988754322 1222222223568899999999998887764
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... .....+...++.|+.++.++++++.+.+ +.++||++||...+.+...
T Consensus 79 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 152 (250)
T PRK12939 79 AAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPK------ 152 (250)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCC------
Confidence 58999999997432 1223455678899999999999986531 3459999999855543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.+|.+.+.+++.++.+ .+++++.++||.+.++....... .........+.
T Consensus 153 ----------------~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~---- 210 (250)
T PRK12939 153 ----------------LGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA--DERHAYYLKGR---- 210 (250)
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC--hHHHHHHHhcC----
Confidence 145999999999999988866 48999999999998876432111 11222222232
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
+...+++++|++++++.++..+ ...|.++
T Consensus 211 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i 241 (250)
T PRK12939 211 ALERLQVPDDVAGAVLFLLSDAARFVTGQLL 241 (250)
T ss_pred CCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence 5566889999999999999764 2355443
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=182.32 Aligned_cols=223 Identities=19% Similarity=0.163 Sum_probs=153.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhCC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVDG---- 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~---- 79 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +...++.. ....+.++++|++|++++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALN-ELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHH-HHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999988764432 11122211 123466779999999998887763
Q ss_pred ---CCEEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 80 ---CDGVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 80 ---~d~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
+|+|||+|+.... ...+.+...+++|+.++..+++++.+.+ +.++||++||.+++++.. .
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------~ 154 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK------F 154 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc------c
Confidence 7999999974321 1123356678899999988888776532 567999999986654321 1
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.+.... ..|+.+|.+.+.+++.++.+ .++++++++||.++++.. ..+........
T Consensus 155 ~~~~~~~~~~~------~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~-------~~~~~~~~~~~---- 217 (256)
T PRK09186 155 EIYEGTSMTSP------VEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP-------EAFLNAYKKCC---- 217 (256)
T ss_pred hhccccccCCc------chhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC-------HHHHHHHHhcC----
Confidence 12222222211 34999999999999988886 489999999998876531 11111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLL 252 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~ 252 (322)
....+++++|+|+++++++.+. ...|.++.
T Consensus 218 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~ 249 (256)
T PRK09186 218 NGKGMLDPDDICGTLVFLLSDQSKYITGQNII 249 (256)
T ss_pred CccCCCCHHHhhhhHhheeccccccccCceEE
Confidence 2345789999999999999754 23565543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-24 Score=182.62 Aligned_cols=225 Identities=16% Similarity=0.094 Sum_probs=159.6
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|| ..+++|+++||||+|+||++++++|+++|++|++++|+.+... +...++.. ...++..+++|++|+++++++++
T Consensus 1 ~~-~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 1 MM-NRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAE-RAAAAIARDVAGARVLAVPADVTDAASVAAAVA 78 (260)
T ss_pred CC-cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhccCCceEEEEEccCCCHHHHHHHHH
Confidence 44 3467899999999999999999999999999999998754321 22222221 23568899999999998887765
Q ss_pred -------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCC
Q 020747 79 -------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 -------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
.+|++||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 79 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 154 (260)
T PRK07063 79 AAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPG---- 154 (260)
T ss_pred HHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCC----
Confidence 58999999996422 2234567789999999999999976531 4468999999855433221
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--ccHH-HHHHHHcC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--FGAE-VILNLING 217 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--~~~~-~~~~~~~g 217 (322)
...|+.+|++.+.+++.++.++ |++++.++||.+-++....... .... ........
T Consensus 155 ------------------~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 216 (260)
T PRK07063 155 ------------------CFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLAL 216 (260)
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhc
Confidence 1459999999999999998875 8999999999998775322111 0111 11111111
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
. +...+..++|+++++++++... ...|..+..
T Consensus 217 ~----~~~r~~~~~~va~~~~fl~s~~~~~itG~~i~v 250 (260)
T PRK07063 217 Q----PMKRIGRPEEVAMTAVFLASDEAPFINATCITI 250 (260)
T ss_pred C----CCCCCCCHHHHHHHHHHHcCccccccCCcEEEE
Confidence 1 2334667999999999998753 356655433
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=180.55 Aligned_cols=217 Identities=17% Similarity=0.123 Sum_probs=153.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+|+||++++++|+++|++|++++++...........+...+.++.++++|++|+++++++++ .
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP 87 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999998887754322112222222224568899999999998887765 4
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.+++|++||.....+.+.
T Consensus 88 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~------------ 155 (258)
T PRK09134 88 ITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPD------------ 155 (258)
T ss_pred CCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCC------------
Confidence 7999999986432 2233456789999999999999987642 2357888888633221111
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.+|.+.+.+.+.+++++ ++++++++||.+.+.... ....+.....+. ......+
T Consensus 156 ----------~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-----~~~~~~~~~~~~----~~~~~~~ 216 (258)
T PRK09134 156 ----------FLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-----SPEDFARQHAAT----PLGRGST 216 (258)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-----ChHHHHHHHhcC----CCCCCcC
Confidence 1459999999999999998875 489999999998765321 111122222222 2234577
Q ss_pred HHHHHHHHHHhhcCCCCCc-cEEEec
Q 020747 230 IRDVVYAHIRALEVPKASG-RYLLAG 254 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g-~~~~~~ 254 (322)
++|+|++++.+++.+..+| .+++.+
T Consensus 217 ~~d~a~~~~~~~~~~~~~g~~~~i~g 242 (258)
T PRK09134 217 PEEIAAAVRYLLDAPSVTGQMIAVDG 242 (258)
T ss_pred HHHHHHHHHHHhcCCCcCCCEEEECC
Confidence 9999999999999876677 445554
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=179.65 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=156.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.+........++.....++..+++|++|+++++++++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 85 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG 85 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5679999999999999999999999999999999875432222223333224567889999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+++.+++|+.++..+++++.+. .+.+++|++||..+..+.+..
T Consensus 86 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~---------- 155 (254)
T PRK06114 86 ALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGL---------- 155 (254)
T ss_pred CCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCC----------
Confidence 46999999996432 233456788999999999988886543 144689999998655433210
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
+ ...|+.+|++.+.+++.++.+. |+++++++||.+.++.... +........+.... +...+
T Consensus 156 ----~------~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~--~~~~~~~~~~~~~~----p~~r~ 219 (254)
T PRK06114 156 ----L------QAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR--PEMVHQTKLFEEQT----PMQRM 219 (254)
T ss_pred ----C------cchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc--ccchHHHHHHHhcC----CCCCC
Confidence 0 1349999999999999998764 8999999999999886432 11111111222221 33446
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
..++|+++++++++.+. ...|..+
T Consensus 220 ~~~~dva~~~~~l~s~~~~~~tG~~i 245 (254)
T PRK06114 220 AKVDEMVGPAVFLLSDAASFCTGVDL 245 (254)
T ss_pred cCHHHHHHHHHHHcCccccCcCCceE
Confidence 67999999999998753 3456443
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=180.85 Aligned_cols=220 Identities=16% Similarity=0.100 Sum_probs=157.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... .....+...+.++..+++|++|.++++.+++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGE-ETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 366799999999999999999999999999999999764322 1222222224568899999999998887665
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||.... ...+.+.+.+++|+.++..+++++.+. .+.+++|++||..++.+.+.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~--------- 153 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPK--------- 153 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCC---------
Confidence 46999999996422 123345678899999998887765432 24578999999855543321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.+|++.+.+++.++.++ |+++++++||.+-++.................... ...
T Consensus 154 -------------~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~----~~~ 216 (253)
T PRK06172 154 -------------MSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMH----PVG 216 (253)
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccC----CCC
Confidence 1459999999999999999875 79999999999988764332111122222222111 334
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
.+..++|+++.+++++... ...|.++
T Consensus 217 ~~~~p~~ia~~~~~l~~~~~~~~~G~~i 244 (253)
T PRK06172 217 RIGKVEEVASAVLYLCSDGASFTTGHAL 244 (253)
T ss_pred CccCHHHHHHHHHHHhCccccCcCCcEE
Confidence 5678999999999999754 3567553
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-24 Score=185.34 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=129.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
++++++|||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+.+|++|+++++++++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD-RAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999998654321 2222222223468889999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhh----cCC-----ccEEEEecchhhhccCCCCCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAK----VHS-----IKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~-----~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
.+|+|||+||.... ...+.+...+++|+.|+.++++++.+ ... .+++|++||..++++.+..
T Consensus 83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~---- 158 (287)
T PRK06194 83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAM---- 158 (287)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCC----
Confidence 47999999997543 12234556789999999998888533 211 1589999998666543221
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPF 199 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~ 199 (322)
+.|+.+|++.+.+++.++.++ +++++.+.||.+..+.
T Consensus 159 ------------------~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~ 200 (287)
T PRK06194 159 ------------------GIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI 200 (287)
T ss_pred ------------------cchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc
Confidence 459999999999999998765 4788889998886654
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=177.33 Aligned_cols=206 Identities=19% Similarity=0.230 Sum_probs=158.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++++++|||||+.||.+++++|+++|++|+.+.|+.++... ...++.. ...++..+.+|++++++++.+.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~-la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEA-LAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999999865432 1122221 24568899999999999887765
Q ss_pred -CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||... +.+.+...+++++|+.++..+..+..+. .+.++||+++|.+++.+.+..
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~--------- 153 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYM--------- 153 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcch---------
Confidence 4899999999632 2334445689999999999998887654 256799999999777655432
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
+.|+.||+..-.+.+.+..|. |+.+..+.||.+..++.+...... ... . ...-
T Consensus 154 -------------avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~~~-~~~------~----~~~~ 209 (265)
T COG0300 154 -------------AVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSDV-YLL------S----PGEL 209 (265)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccccccccc-ccc------c----chhh
Confidence 669999999999999998874 899999999999998754111100 000 0 2344
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020747 227 FVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~ 245 (322)
++.++|+|+..+.++.+.+
T Consensus 210 ~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 210 VLSPEDVAEAALKALEKGK 228 (265)
T ss_pred ccCHHHHHHHHHHHHhcCC
Confidence 6789999999999999854
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=178.13 Aligned_cols=220 Identities=17% Similarity=0.132 Sum_probs=155.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. +++|+++||||+|+||.+++++|+++|++|++++|++.+.. ....++...+.++.++.+|++++++++++++
T Consensus 1 ~~~--~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 1 MMR--LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELD-QLVAEIRAEGGEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCC--CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 564 56789999999999999999999999999999999764322 2222222223568889999999998887765
Q ss_pred -----CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhc-cCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAML-LNETPMTP 143 (322)
Q Consensus 79 -----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~-~~~~~~~~ 143 (322)
.+|++||+||.... ...+.+...+++|+.++..+++++.+. .+.+++|++||..++. +.+.
T Consensus 78 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~---- 153 (254)
T PRK07478 78 VERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPG---- 153 (254)
T ss_pred HHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCC----
Confidence 57999999996422 122346778999999999887776542 1456899999984431 1111
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
...|+.||++.+.+++.++.++ |+++++++||.+-++..... ..... .........
T Consensus 154 ------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~-~~~~~~~~~- 212 (254)
T PRK07478 154 ------------------MAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAM-GDTPE-ALAFVAGLH- 212 (254)
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccc-cCCHH-HHHHHHhcC-
Confidence 1459999999999999998875 79999999999988743221 11111 111111110
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
+...+..++|+++++++++.+. ..+|..
T Consensus 213 --~~~~~~~~~~va~~~~~l~s~~~~~~~G~~ 242 (254)
T PRK07478 213 --ALKRMAQPEEIAQAALFLASDAASFVTGTA 242 (254)
T ss_pred --CCCCCcCHHHHHHHHHHHcCchhcCCCCCe
Confidence 2334568999999999998754 245644
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=182.11 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=156.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++. ...++.++++|++|+++++++++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ-NVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999988653221 1222221 23468899999999999887776
Q ss_pred CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.+++|++||..+.++.+..
T Consensus 94 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~-------- 165 (280)
T PLN02253 94 TLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGP-------- 165 (280)
T ss_pred CCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCC--------
Confidence 58999999996432 1123456889999999999999887531 34589999998665543321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc---cHHHHH---HHHcCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF---GAEVIL---NLINGDQ 219 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~---~~~~~~---~~~~g~~ 219 (322)
..|+.+|.+.|.+++.++.+. |+++++++||.+.++......+. ....+. .......
T Consensus 166 --------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (280)
T PLN02253 166 --------------HAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNA 231 (280)
T ss_pred --------------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCC
Confidence 349999999999999998875 89999999999988753221110 011111 1111110
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
+.....++++|+++++++++... ...| .+.+.+
T Consensus 232 --~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdg 267 (280)
T PLN02253 232 --NLKGVELTVDDVANAVLFLASDEARYISGLNLMIDG 267 (280)
T ss_pred --CCcCCCCCHHHHHHHHHhhcCcccccccCcEEEECC
Confidence 01133578999999999998753 2345 344443
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=178.43 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=151.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... .++..+++|++|+++++++++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~------------~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 71 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY------------NDVDYFKVDVSNKEQVIKGIDYVISKYG 71 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc------------CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5679999999999999999999999999999999875331 247889999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 72 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 140 (258)
T PRK06398 72 RIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRN----------- 140 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCC-----------
Confidence 57999999996422 2233456779999999999999886532 4579999999855433221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCC----ccHHHH----HHHHcCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILN----FGAEVI----LNLINGDQS 220 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~----~~~~~~----~~~~~g~~~ 220 (322)
...|+.+|++.+.+.+.++.++ ++++++++||.+.++....... ...... ..+....
T Consensus 141 -----------~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 207 (258)
T PRK06398 141 -----------AAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMH-- 207 (258)
T ss_pred -----------CchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcC--
Confidence 1459999999999999999875 4999999999998774321100 001111 1111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
+...+..++|+|+++++++... ...|..
T Consensus 208 --~~~~~~~p~eva~~~~~l~s~~~~~~~G~~ 237 (258)
T PRK06398 208 --PMKRVGKPEEVAYVVAFLASDLASFITGEC 237 (258)
T ss_pred --CcCCCcCHHHHHHHHHHHcCcccCCCCCcE
Confidence 3345678999999999998753 345644
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=178.59 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=158.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+.+|+++||||+|+||++++++|+++|++|++++|+..... ....++.....++..+.+|++|+++++++++
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAE-LAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999998754321 2222222223467888999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------- 154 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDT----------- 154 (254)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCC-----------
Confidence 47999999986422 233456779999999999999987763 14568999999855443221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.++ |+++++++||.+.++....... ............ +...+
T Consensus 155 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~-~~~~~~~~~~~~----p~~~~ 218 (254)
T PRK08085 155 -----------ITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE-DEAFTAWLCKRT----PAARW 218 (254)
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc-CHHHHHHHHhcC----CCCCC
Confidence 1459999999999999998774 8999999999999986433211 111112222222 34567
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
..++|+++++.+++... ..+|..+
T Consensus 219 ~~~~~va~~~~~l~~~~~~~i~G~~i 244 (254)
T PRK08085 219 GDPQELIGAAVFLSSKASDFVNGHLL 244 (254)
T ss_pred cCHHHHHHHHHHHhCccccCCcCCEE
Confidence 78999999999999753 4456543
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=179.98 Aligned_cols=218 Identities=15% Similarity=0.119 Sum_probs=156.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..+ .....+.....++..+++|++|+++++++++
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAP---ETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHH---HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 567999999999999999999999999999988875422 1112222224568899999999999887775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.+++.+++|+.++..+++++.+.+ + .++||++||..++.+....
T Consensus 83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~--------- 153 (251)
T PRK12481 83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRV--------- 153 (251)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCC---------
Confidence 47999999996432 2345577889999999999999876532 2 3689999998655433210
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.||.+.+.+++.++.+ +|++++.++||.+-++..... .............. +...
T Consensus 154 -------------~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~----p~~~ 215 (251)
T PRK12481 154 -------------PSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAAL-RADTARNEAILERI----PASR 215 (251)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhc-ccChHHHHHHHhcC----CCCC
Confidence 34999999999999999886 489999999999987753221 11111111222211 3345
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+..++|+++++.+++... ...|..+..
T Consensus 216 ~~~peeva~~~~~L~s~~~~~~~G~~i~v 244 (251)
T PRK12481 216 WGTPDDLAGPAIFLSSSASDYVTGYTLAV 244 (251)
T ss_pred CcCHHHHHHHHHHHhCccccCcCCceEEE
Confidence 678999999999999753 355655433
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=180.62 Aligned_cols=226 Identities=21% Similarity=0.182 Sum_probs=158.2
Q ss_pred CCCCC--CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGE--GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~--~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||... +++|+++||||+|+||++++++|+++|++|++++|+..... ....++...+.++..+++|++|+++++++++
T Consensus 1 ~~~~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 1 MMPNLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE-AVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCCceeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 66543 35689999999999999999999999999999998753321 2222222223468899999999988876654
Q ss_pred -------CCCEEEEcccCccc--------------------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEe
Q 020747 79 -------GCDGVFHTASPVIF--------------------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLT 128 (322)
Q Consensus 79 -------~~d~vih~A~~~~~--------------------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~ 128 (322)
++|+|||+||.... ...+.+...+++|+.++..+++++.+. .+.++||++
T Consensus 80 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~i 159 (278)
T PRK08277 80 QILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINI 159 (278)
T ss_pred HHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 68999999995321 112345678899999999887766543 145789999
Q ss_pred cchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC
Q 020747 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN 205 (322)
Q Consensus 129 SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~ 205 (322)
||..++.+.+. ...|+.+|++.+.+++.++.++ |+++++++||.+.++.......
T Consensus 160 sS~~~~~~~~~----------------------~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~ 217 (278)
T PRK08277 160 SSMNAFTPLTK----------------------VPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLF 217 (278)
T ss_pred ccchhcCCCCC----------------------CchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhc
Confidence 99855433221 1449999999999999999876 8999999999999885322110
Q ss_pred ----ccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC-C--CCCccEEEe
Q 020747 206 ----FGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV-P--KASGRYLLA 253 (322)
Q Consensus 206 ----~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~-~--~~~g~~~~~ 253 (322)
............. +...+..++|+|+++++++.. . ..+|..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~----p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~v 268 (278)
T PRK08277 218 NEDGSLTERANKILAHT----PMGRFGKPEELLGTLLWLADEKASSFVTGVVLPV 268 (278)
T ss_pred cccccchhHHHHHhccC----CccCCCCHHHHHHHHHHHcCccccCCcCCCEEEE
Confidence 0011111222221 345577899999999999876 2 345655433
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=181.10 Aligned_cols=227 Identities=16% Similarity=0.078 Sum_probs=156.3
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC-
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
||...+++|+++||||+|+||++++++|+++|++|+++.|+..+.......++.. .+.++..+++|++|+++++++++
T Consensus 1 ~~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 1 NMSNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CcccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 4556678899999999999999999999999999988876533221111222211 13468899999999998877665
Q ss_pred ------CCCEEEEcccCccc-----------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCC
Q 020747 79 ------GCDGVFHTASPVIF-----------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNE 138 (322)
Q Consensus 79 ------~~d~vih~A~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~ 138 (322)
.+|++||+||.... .....+...+++|+.+...+.+.+.+.+ +.++||++||..+..+.+
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~ 160 (260)
T PRK08416 81 IDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIE 160 (260)
T ss_pred HHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCC
Confidence 47999999985321 1123345688889999888777765532 346899999974432222
Q ss_pred CCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHH
Q 020747 139 TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215 (322)
Q Consensus 139 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~ 215 (322)
. ...|+.||++.+.+++.++.++ |++++.++||.+-.+..... ...........
T Consensus 161 ~----------------------~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~-~~~~~~~~~~~ 217 (260)
T PRK08416 161 N----------------------YAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAF-TNYEEVKAKTE 217 (260)
T ss_pred C----------------------cccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhc-cCCHHHHHHHH
Confidence 1 0349999999999999999885 89999999999977653221 11112222222
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
... +...+..++|++.++++++... ...|.++..+
T Consensus 218 ~~~----~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vd 254 (260)
T PRK08416 218 ELS----PLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVD 254 (260)
T ss_pred hcC----CCCCCCCHHHHHHHHHHHcChhhhcccCcEEEEc
Confidence 222 3345678999999999998753 3456554333
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=178.60 Aligned_cols=211 Identities=17% Similarity=0.119 Sum_probs=152.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||.+++++|+++|++|++++|+..... +....+.....++.++.+|+++++++.++++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLD-EVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999999753321 1222222223568889999999998876655
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.+++|++||..+..+.+.
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~---------- 156 (263)
T PRK07814 87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRG---------- 156 (263)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCC----------
Confidence 67999999986322 223446678999999999999999752 24578999999755443221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+.|+.+|.+++.+++.++.+. +++++.++||.+.++..... ..... +.....+.. ....+
T Consensus 157 ------------~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~-~~~~~-~~~~~~~~~---~~~~~ 219 (263)
T PRK07814 157 ------------FAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVV-AANDE-LRAPMEKAT---PLRRL 219 (263)
T ss_pred ------------CchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhc-cCCHH-HHHHHHhcC---CCCCC
Confidence 1459999999999999999875 68999999999987643211 11111 112122110 23345
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020747 228 VEIRDVVYAHIRALEVP 244 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~ 244 (322)
..++|+++++++++...
T Consensus 220 ~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 220 GDPEDIAAAAVYLASPA 236 (263)
T ss_pred cCHHHHHHHHHHHcCcc
Confidence 68999999999999753
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=178.55 Aligned_cols=218 Identities=17% Similarity=0.111 Sum_probs=155.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+++|+||||+|+||++++++|+++|++|+++.|+..+.......++...+.++.++.+|++|+++++++++ .+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 37999999999999999999999999998887654432222223333335678999999999998877665 47
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ ..++||++||..+..+...
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~------------ 149 (256)
T PRK12743 82 DVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPG------------ 149 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCC------------
Confidence 999999997432 1233456789999999999999887642 1358999999744332211
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+++.++.++ |++++.++||.+.++...... .........+. ....+.
T Consensus 150 ----------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~---~~~~~~~~~~~----~~~~~~ 212 (256)
T PRK12743 150 ----------ASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD---SDVKPDSRPGI----PLGRPG 212 (256)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC---hHHHHHHHhcC----CCCCCC
Confidence 1459999999999999998764 899999999999998643211 11111111111 223456
Q ss_pred eHHHHHHHHHHhhcCCC--CCccE-EEec
Q 020747 229 EIRDVVYAHIRALEVPK--ASGRY-LLAG 254 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~--~~g~~-~~~~ 254 (322)
+++|++.++++++.... ..|.+ .+.+
T Consensus 213 ~~~dva~~~~~l~~~~~~~~~G~~~~~dg 241 (256)
T PRK12743 213 DTHEIASLVAWLCSEGASYTTGQSLIVDG 241 (256)
T ss_pred CHHHHHHHHHHHhCccccCcCCcEEEECC
Confidence 89999999999987542 45655 4443
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=178.95 Aligned_cols=225 Identities=17% Similarity=0.119 Sum_probs=155.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+ ... .....++.....++..+++|++++++++++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999999987 322 12233333224468899999999988877665
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... ...+.+.+.+++|+.++..+++++.+.+ ..+++|++||..++.+.+.
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 150 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADLY----------- 150 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCCCC-----------
Confidence 47999999996432 1223456788899999998888876542 2268999999855543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 225 (322)
...|+.||++.+.+++.++.++ |++++.++||.|.++.................... ... ...
T Consensus 151 -----------~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 218 (272)
T PRK08589 151 -----------RSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWMT-PLG 218 (272)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhccC-CCC
Confidence 1459999999999999999875 89999999999988754321111110011101000 001 233
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
.+..++|+++++++++... ..+|.. .+.++
T Consensus 219 ~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg 251 (272)
T PRK08589 219 RLGKPEEVAKLVVFLASDDSSFITGETIRIDGG 251 (272)
T ss_pred CCcCHHHHHHHHHHHcCchhcCcCCCEEEECCC
Confidence 4678999999999998753 345644 34443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=191.16 Aligned_cols=231 Identities=17% Similarity=0.144 Sum_probs=157.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-------C--CCCcEEEEEccCCCccchHHh
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-------G--ATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~--~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
+++++||||||+|+||++++++|+++|++|++++|+...... ....+. . ...++.++.+|++|.++++++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~-l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAES-LVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 457899999999999999999999999999999998654321 111110 0 013588999999999999999
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
+.++|+|||+||..... ...+...+++|+.|+.+++++|++. ++++||++||.++.. ... .+. ....
T Consensus 157 LggiDiVVn~AG~~~~~-v~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~-~g~--------p~~-~~~s- 223 (576)
T PLN03209 157 LGNASVVICCIGASEKE-VFDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNK-VGF--------PAA-ILNL- 223 (576)
T ss_pred hcCCCEEEEcccccccc-ccchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhcc-cCc--------ccc-chhh-
Confidence 99999999999864321 1234567889999999999999987 889999999984321 110 000 0111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYA 236 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~ 236 (322)
...|...|..+|+.+. ..|+++++||||.++++.+...... .+.....+. .....+..+|+|++
T Consensus 224 -----k~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~t~---~v~~~~~d~----~~gr~isreDVA~v 287 (576)
T PLN03209 224 -----FWGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKETH---NLTLSEEDT----LFGGQVSNLQVAEL 287 (576)
T ss_pred -----HHHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCcccccccc---ceeeccccc----cCCCccCHHHHHHH
Confidence 1347788888888875 4699999999999998754321000 000001111 22345889999999
Q ss_pred HHHhhcCCC-CCc-cE-EEecCC---CCHHHHHHHH
Q 020747 237 HIRALEVPK-ASG-RY-LLAGSV---AQHSDILKFL 266 (322)
Q Consensus 237 ~~~~~~~~~-~~g-~~-~~~~~~---~~~~e~~~~i 266 (322)
+++++.++. ..+ ++ ++++.. ..+.+++..|
T Consensus 288 VvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 288 MACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 999998654 334 55 344432 3455555444
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=178.19 Aligned_cols=216 Identities=18% Similarity=0.147 Sum_probs=153.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... ..++.++++|++|+++++++++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDL----------PEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhc----------CCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 467799999999999999999999999999999999764321 2357889999999988775543
Q ss_pred -CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.+++|++||..+..+...
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~-------- 147 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPE-------- 147 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCC--------
Confidence 57999999985321 223456778999999999887776542 14568999999844332110
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC-------c-cHHHHHHH--
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN-------F-GAEVILNL-- 214 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~-------~-~~~~~~~~-- 214 (322)
....|+.+|.+.+.+++.++.++ |+++++++||.+.++....... . .......+
T Consensus 148 -------------~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (260)
T PRK06523 148 -------------STTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMD 214 (260)
T ss_pred -------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 01459999999999999998764 8999999999999986321100 0 01111111
Q ss_pred -HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 215 -INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 215 -~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+. +...+..++|+++++.+++... ...| .+.+.++
T Consensus 215 ~~~~~----p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg 255 (260)
T PRK06523 215 SLGGI----PLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGG 255 (260)
T ss_pred HhccC----ccCCCCCHHHHHHHHHHHhCcccccccCceEEecCC
Confidence 1111 3344568999999999999753 3445 4455543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=176.21 Aligned_cols=222 Identities=18% Similarity=0.167 Sum_probs=157.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||.+++++|+++|++|++++|+..... ....++.....++..+++|+++.++++++++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQ-AVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998653321 2222222223467889999999998876665
Q ss_pred CCCEEEEcccCcc---c---CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI---F---LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~---~---~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||... . ...+.+...+++|+.++..+++++.+. .+.+++|++||..++.+.+.
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 154 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDF---------- 154 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCC----------
Confidence 4799999998532 1 222335578999999999998887543 14578999999855543221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
.+.|+.||++.+.+++.++.++ |++++.++||.+.++........ ........... ....
T Consensus 155 ------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~~~----~~~~ 217 (252)
T PRK07035 155 ------------QGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN-DAILKQALAHI----PLRR 217 (252)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC-HHHHHHHHccC----CCCC
Confidence 1459999999999999998775 89999999999987754322111 11222222222 3345
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCccE-EEecC
Q 020747 227 FVEIRDVVYAHIRALEVPK--ASGRY-LLAGS 255 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~--~~g~~-~~~~~ 255 (322)
+..++|+|+++++++.+.. ..|.+ .+.++
T Consensus 218 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 218 HAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred cCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 6789999999999997642 35544 44443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=178.04 Aligned_cols=219 Identities=17% Similarity=0.154 Sum_probs=153.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+++||||+|+||++++++|+++|++|++++|+..... ....++.....++..+++|++++++++++++ ++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQ-AAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999998754321 1222222223467889999999998877665 57
Q ss_pred CEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||..... ..+.+...+++|+.++..+++++.+.+ ...++|++||..++++.+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 148 (256)
T PRK08643 81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPE------------ 148 (256)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCC------------
Confidence 9999999864321 123346788999999998888876531 2358999999866554332
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC-------ccHHH-HHHHHcCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN-------FGAEV-ILNLINGDQS 220 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~-------~~~~~-~~~~~~g~~~ 220 (322)
.+.|+.+|.+.+.+++.++.+ .|+++++++||.+.++....... ..... ........
T Consensus 149 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (256)
T PRK08643 149 ----------LAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDI-- 216 (256)
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccC--
Confidence 145999999999999999876 48999999999998875321100 00000 11111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
....+..++|+++++.+++... ..+|..+..
T Consensus 217 --~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~v 249 (256)
T PRK08643 217 --TLGRLSEPEDVANCVSFLAGPDSDYITGQTIIV 249 (256)
T ss_pred --CCCCCcCHHHHHHHHHHHhCccccCccCcEEEe
Confidence 2334678999999999999754 356655433
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=177.39 Aligned_cols=211 Identities=17% Similarity=0.169 Sum_probs=155.5
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. .+++++++||||+|+||++++++|+++|++|++++|+..+.. +...++...+.++.++++|++++++++++++
T Consensus 1 ~~~-~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 1 MAQ-SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLK-AVAEEVEAYGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCc-cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHH
Confidence 553 355689999999999999999999999999999999764321 1222222224578899999999998887776
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.+++|++||..++++....
T Consensus 79 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~----- 153 (239)
T PRK07666 79 KNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVT----- 153 (239)
T ss_pred HHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCC-----
Confidence 68999999986432 122334678999999999999988742 256789999998666543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
..|+.+|.+.+.+++.++.+ .|++++++|||.+.++...... ....
T Consensus 154 -----------------~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~----------~~~~---- 202 (239)
T PRK07666 154 -----------------SAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLG----------LTDG---- 202 (239)
T ss_pred -----------------cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhcc----------cccc----
Confidence 45999999999999888765 4899999999999887532110 0011
Q ss_pred CCCcceeHHHHHHHHHHhhcCCCCCccEE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPKASGRYL 251 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~~~g~~~ 251 (322)
....++.++|+|++++.+++.+ .+.++
T Consensus 203 ~~~~~~~~~~~a~~~~~~l~~~--~~~~~ 229 (239)
T PRK07666 203 NPDKVMQPEDLAEFIVAQLKLN--KRTFI 229 (239)
T ss_pred CCCCCCCHHHHHHHHHHHHhCC--CceEE
Confidence 2234578999999999999875 34453
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=175.79 Aligned_cols=220 Identities=20% Similarity=0.167 Sum_probs=156.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.++++++||||+|+||++++++|+++|++|+++.|+..........++.....++.++.+|++++++++++++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3568999999999999999999999999998887754322112222222234578899999999998887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ ..+++|++||.....+.+.
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~------------- 149 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPG------------- 149 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCC-------------
Confidence 58999999996432 1223456778999999999999987642 2358999999744332211
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
.+.|+.+|.+.+.+++.++.++ ++++++++||.+-++..... ........+.+.. ....+.+
T Consensus 150 ---------~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~--~~~~~~~~~~~~~----~~~~~~~ 214 (245)
T PRK12937 150 ---------YGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG--KSAEQIDQLAGLA----PLERLGT 214 (245)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc--CCHHHHHHHHhcC----CCCCCCC
Confidence 1459999999999999988764 89999999999887753211 1122233333322 3345668
Q ss_pred HHHHHHHHHHhhcCCC--CCccE-EEe
Q 020747 230 IRDVVYAHIRALEVPK--ASGRY-LLA 253 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~--~~g~~-~~~ 253 (322)
++|+++++++++..+. ..|.+ +++
T Consensus 215 ~~d~a~~~~~l~~~~~~~~~g~~~~~~ 241 (245)
T PRK12937 215 PEEIAAAVAFLAGPDGAWVNGQVLRVN 241 (245)
T ss_pred HHHHHHHHHHHcCccccCccccEEEeC
Confidence 9999999999997542 34544 444
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=176.85 Aligned_cols=216 Identities=17% Similarity=0.125 Sum_probs=157.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... ....... ..++..+.+|++++++++++++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~--~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA--EVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISAFG 88 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999875321 1122221 2456789999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..+.++.+..
T Consensus 89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~---------- 158 (255)
T PRK06841 89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERH---------- 158 (255)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCC----------
Confidence 57999999997532 122344568999999999999998753 245799999998666544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.+|.+.+.+++.++.++ |++++.++||.+.++....... .........+. +...+
T Consensus 159 ------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~----~~~~~ 220 (255)
T PRK06841 159 ------------VAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWA--GEKGERAKKLI----PAGRF 220 (255)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccc--hhHHHHHHhcC----CCCCC
Confidence 459999999999999998874 8999999999998876432111 11111222222 44567
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
.+++|++++++.++... ...|.++..
T Consensus 221 ~~~~~va~~~~~l~~~~~~~~~G~~i~~ 248 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAAMITGENLVI 248 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEE
Confidence 89999999999999764 345655433
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=173.47 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=152.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~vi 84 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ..++..+.+|++++ +++.+.+..+|+||
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~id~lv 72 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL----------SGNFHFLQLDLSDDLEPLFDWVPSVDILC 72 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc----------CCcEEEEECChHHHHHHHHHhhCCCCEEE
Confidence 45689999999999999999999999999999988753321 23578899999997 33334445789999
Q ss_pred EcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 85 HTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 85 h~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
|+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+..
T Consensus 73 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~--------------- 137 (235)
T PRK06550 73 NTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGG--------------- 137 (235)
T ss_pred ECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCC---------------
Confidence 99985421 223345678999999999999998653 134689999998665433221
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHH
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D 232 (322)
..|+.+|.+.+.+.+.++.++ |+++++++||.+.++....... ............ +...+..++|
T Consensus 138 -------~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~ 205 (235)
T PRK06550 138 -------AAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE-PGGLADWVARET----PIKRWAEPEE 205 (235)
T ss_pred -------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC-chHHHHHHhccC----CcCCCCCHHH
Confidence 349999999999999988875 8999999999999886433222 111222222222 3455678999
Q ss_pred HHHHHHHhhcCC--CCCccEE
Q 020747 233 VVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 233 ~a~~~~~~~~~~--~~~g~~~ 251 (322)
+|+++++++.+. ...|..+
T Consensus 206 ~a~~~~~l~s~~~~~~~g~~~ 226 (235)
T PRK06550 206 VAELTLFLASGKADYMQGTIV 226 (235)
T ss_pred HHHHHHHHcChhhccCCCcEE
Confidence 999999999653 3455443
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=177.14 Aligned_cols=217 Identities=15% Similarity=0.113 Sum_probs=151.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG------- 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------- 79 (322)
++|+++||||+|+||+++++.|+++|++|+++.++............ ..++.++++|++|++++++++++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL---GDRAIALQADVTDREQVQAMFATATEHFGK 80 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 45899999999999999999999999999887654322111111111 24688899999999988877652
Q ss_pred -CCEEEEcccCccc-----------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 80 -CDGVFHTASPVIF-----------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 80 -~d~vih~A~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
+|++||+||.... ...+.+.+.+++|+.++.++++++.+. .+.+++|++||..... ..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-~~------ 153 (253)
T PRK08642 81 PITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN-PV------ 153 (253)
T ss_pred CCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC-CC------
Confidence 8999999985210 112234567999999999999998743 1457899999962211 10
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
.+ .+.|+.+|.+.+.+++.+++++ |++++.++||.+..+...... .......+....
T Consensus 154 ---------~~------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~--~~~~~~~~~~~~--- 213 (253)
T PRK08642 154 ---------VP------YHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT--PDEVFDLIAATT--- 213 (253)
T ss_pred ---------CC------ccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC--CHHHHHHHHhcC---
Confidence 01 1459999999999999999874 899999999999876432211 112222222222
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
+...+.+++|+++++.+++... ...| .+.+.+
T Consensus 214 -~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdg 248 (253)
T PRK08642 214 -PLRKVTTPQEFADAVLFFASPWARAVTGQNLVVDG 248 (253)
T ss_pred -CcCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCC
Confidence 3456789999999999999753 3455 344443
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=184.74 Aligned_cols=194 Identities=18% Similarity=0.142 Sum_probs=133.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||.+++++|+++|++|++++|+..+.. +...++.....++.++.+|++|.++++++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAE-AAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45689999999999999999999999999999998754321 2222222223468899999999998887765
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--ccEEEEecchhhhccCCCCC-CCCcc
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--IKRVVLTSSIGAMLLNETPM-TPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~i~~SS~~~~~~~~~~~-~~~~~ 146 (322)
.+|+|||+||.... ...+.++..+++|+.|+.++++++.+.+ + .++||++||....++..... ....+
T Consensus 83 ~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~ 162 (322)
T PRK07453 83 PLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAP 162 (322)
T ss_pred CccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCc
Confidence 38999999996432 1233467789999999999999887631 2 35999999985443211100 00000
Q ss_pred ccCCC-------CCCc-----ccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCC
Q 020747 147 IDETW-------FSNP-----VLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFF 200 (322)
Q Consensus 147 ~~E~~-------~~~~-----~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~ 200 (322)
.+.++ +..+ ..+..+...|+.||++.+.+++.+++++ |++++++|||.|++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~ 232 (322)
T PRK07453 163 ADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPL 232 (322)
T ss_pred cchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcc
Confidence 00000 0000 0011223679999999999888888765 79999999999986543
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=179.00 Aligned_cols=220 Identities=18% Similarity=0.134 Sum_probs=153.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||++++++|+++|++|++++|+.+... .....+.....++.++.+|++++++++++++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD-AAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998754321 1212222223457888999999998887665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.. ..++||++||..+..+.+.
T Consensus 86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~------------ 153 (264)
T PRK07576 86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPM------------ 153 (264)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCC------------
Confidence 46999999985321 2233456678899999999999987531 2259999999855433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCC-CCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPF-FQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.+. |++++.++||.+.+.. .....+ ............ ....+
T Consensus 154 ----------~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~-~~~~~~~~~~~~----~~~~~ 218 (264)
T PRK07576 154 ----------QAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAP-SPELQAAVAQSV----PLKRN 218 (264)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhccc-CHHHHHHHHhcC----CCCCC
Confidence 1459999999999999998764 8999999999987532 111111 011111111111 34456
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
..++|+|+++++++... ...|.++..
T Consensus 219 ~~~~dva~~~~~l~~~~~~~~~G~~~~~ 246 (264)
T PRK07576 219 GTKQDIANAALFLASDMASYITGVVLPV 246 (264)
T ss_pred CCHHHHHHHHHHHcChhhcCccCCEEEE
Confidence 78999999999999753 245655433
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=173.40 Aligned_cols=207 Identities=17% Similarity=0.176 Sum_probs=146.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~vi 84 (322)
+|+++||||+|+||++++++|+++ ++|++++|+.... +.+.. ....++++++|++|+++++++++ ++|+||
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~--~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi 76 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL--DELAA---ELPGATPFPVDLTDPEAIAAAVEQLGRLDVLV 76 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH--HHHHH---HhccceEEecCCCCHHHHHHHHHhcCCCCEEE
Confidence 379999999999999999999999 9999999975332 11111 11347889999999999998887 589999
Q ss_pred EcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc--CCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 85 HTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV--HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 85 h~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
|+||..... ..+.+.+.++.|+.+..++.+.+.+. ...+++|++||..++.+...
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~------------------ 138 (227)
T PRK08219 77 HNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRANPG------------------ 138 (227)
T ss_pred ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcCCC------------------
Confidence 999974321 11234556889999966665554331 13468999999855433221
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc-C-ccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHH
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKEN-G-IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVY 235 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-~-~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~ 235 (322)
...|+.+|.+.+.+++.++.+. + ++++.++||.+.++..... ... .+.. + ....+++++|+++
T Consensus 139 ----~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~-------~~~--~~~~-~-~~~~~~~~~dva~ 203 (227)
T PRK08219 139 ----WGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRGL-------VAQ--EGGE-Y-DPERYLRPETVAK 203 (227)
T ss_pred ----CchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhhh-------hhh--hccc-c-CCCCCCCHHHHHH
Confidence 1459999999999999887653 5 8999999998766532110 000 0110 0 3356799999999
Q ss_pred HHHHhhcCCCCCccEEEe
Q 020747 236 AHIRALEVPKASGRYLLA 253 (322)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~ 253 (322)
+++.+++++..+.++++.
T Consensus 204 ~~~~~l~~~~~~~~~~~~ 221 (227)
T PRK08219 204 AVRFAVDAPPDAHITEVV 221 (227)
T ss_pred HHHHHHcCCCCCccceEE
Confidence 999999887544466554
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=175.59 Aligned_cols=209 Identities=19% Similarity=0.161 Sum_probs=152.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|++|||||+|+||++++++|+++|++|++++|+..+.. +...++. ....+.+.+|++|+++++++++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS-QTLPGVP--ADALRIGGIDLVDPQAARRAVDEVNRQFG 81 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH-HHHHHHh--hcCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999764432 1222222 1246778899999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.++.|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 150 (239)
T PRK12828 82 RLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPG----------- 150 (239)
T ss_pred CcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCCC-----------
Confidence 57999999986432 112234567889999999999988642 25789999999855432211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++++ .+++++++|||.++++....... .. ....+
T Consensus 151 -----------~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~~-----------~~----~~~~~ 204 (239)
T PRK12828 151 -----------MGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMP-----------DA----DFSRW 204 (239)
T ss_pred -----------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcCC-----------ch----hhhcC
Confidence 145999999999999888765 48999999999999984221110 00 23447
Q ss_pred eeHHHHHHHHHHhhcCCC--CCcc-EEEec
Q 020747 228 VEIRDVVYAHIRALEVPK--ASGR-YLLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~--~~g~-~~~~~ 254 (322)
++++|+|++++.++.+.. ..|. +.+.+
T Consensus 205 ~~~~dva~~~~~~l~~~~~~~~g~~~~~~g 234 (239)
T PRK12828 205 VTPEQIAAVIAFLLSDEAQAITGASIPVDG 234 (239)
T ss_pred CCHHHHHHHHHHHhCcccccccceEEEecC
Confidence 899999999999998652 3464 45544
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=176.00 Aligned_cols=216 Identities=14% Similarity=0.106 Sum_probs=154.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...+. ..++.++++|++|+++++++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA-AVAASL---GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999764321 111111 3468899999999998877665
Q ss_pred CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
.+|++||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.++||++||..+.++.+..
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~------------ 147 (261)
T PRK08265 80 RVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGR------------ 147 (261)
T ss_pred CCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCC------------
Confidence 57999999996432 2234566789999999999999887642 34689999998666544321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
..|+.+|.+.+.+++.++.++ |+++++++||.+.++................... .. +...+..
T Consensus 148 ----------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~--~~-p~~r~~~ 214 (261)
T PRK08265 148 ----------WLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP--FH-LLGRVGD 214 (261)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc--cC-CCCCccC
Confidence 459999999999999998774 8999999999988775322111001111111110 01 2334568
Q ss_pred HHHHHHHHHHhhcCC--CCCccE
Q 020747 230 IRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
++|+|+++++++... ...|..
T Consensus 215 p~dva~~~~~l~s~~~~~~tG~~ 237 (261)
T PRK08265 215 PEEVAQVVAFLCSDAASFVTGAD 237 (261)
T ss_pred HHHHHHHHHHHcCccccCccCcE
Confidence 999999999999753 345644
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=176.17 Aligned_cols=220 Identities=16% Similarity=0.121 Sum_probs=159.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ....++...+.++..+.+|++|++++.++++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLE-AAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45799999999999999999999999999999999753321 2222222234568899999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~----------- 156 (256)
T PRK06124 88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAG----------- 156 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCC-----------
Confidence 46999999996432 223345678999999999999777652 15578999999855543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.+. ++++++++||.+.++....... .......+.... ....+
T Consensus 157 -----------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~~~~ 220 (256)
T PRK06124 157 -----------DAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA-DPAVGPWLAQRT----PLGRW 220 (256)
T ss_pred -----------ccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc-ChHHHHHHHhcC----CCCCC
Confidence 1459999999999999988764 8999999999999986432211 111111222221 34557
Q ss_pred eeHHHHHHHHHHhhcCCC--CCccEEEe
Q 020747 228 VEIRDVVYAHIRALEVPK--ASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~--~~g~~~~~ 253 (322)
++++|++++++.++..+. ..|.++..
T Consensus 221 ~~~~~~a~~~~~l~~~~~~~~~G~~i~~ 248 (256)
T PRK06124 221 GRPEEIAGAAVFLASPAASYVNGHVLAV 248 (256)
T ss_pred CCHHHHHHHHHHHcCcccCCcCCCEEEE
Confidence 899999999999998653 45765443
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=175.74 Aligned_cols=217 Identities=18% Similarity=0.148 Sum_probs=155.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+. .. ..........+.++.++++|+++.++++++++
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NW-DETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4579999999999999999999999999999998872 21 11111222223568899999999998887766
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... .....++..+++|+.++.++++++.+. .+.+++|++||..++.+.+.
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 159 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKF----------- 159 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCC-----------
Confidence 57999999996432 223356678999999999988877653 14568999999855543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++++. |+++++++||.+.++....... ......+..... +...+
T Consensus 160 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~-~~~~~~~~~~~~----~~~~~ 223 (258)
T PRK06935 160 -----------VPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRA-DKNRNDEILKRI----PAGRW 223 (258)
T ss_pred -----------chhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhccc-ChHHHHHHHhcC----CCCCC
Confidence 1459999999999999999875 8999999999998875332111 111111222211 34557
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
..++|+++.+.+++... ...|..+
T Consensus 224 ~~~~dva~~~~~l~s~~~~~~~G~~i 249 (258)
T PRK06935 224 GEPDDLMGAAVFLASRASDYVNGHIL 249 (258)
T ss_pred CCHHHHHHHHHHHcChhhcCCCCCEE
Confidence 78999999999998753 3456443
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=175.93 Aligned_cols=219 Identities=17% Similarity=0.115 Sum_probs=155.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.+... .....+...+.++.++++|++|+++++++++
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE-EAAAHLEALGIDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999999999998753321 1222222223467889999999998866554
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... ...+.+.+.++.|+.++.++++++.+. .+.++||++||..++++.+.. .
T Consensus 89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~----~---- 160 (259)
T PRK08213 89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPE----V---- 160 (259)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCcc----c----
Confidence 57999999986321 222344567889999999999987653 245799999998566543320 0
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
.+...|+.+|++.+.+++.+++++ |+++++++|+.+-++..... .......+..+. ....
T Consensus 161 ----------~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~---~~~~~~~~~~~~----~~~~ 223 (259)
T PRK08213 161 ----------MDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGT---LERLGEDLLAHT----PLGR 223 (259)
T ss_pred ----------cCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhh---hHHHHHHHHhcC----CCCC
Confidence 011459999999999999998864 89999999999887653321 122223333332 3344
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
+...+|+++++.+++... ...|..
T Consensus 224 ~~~~~~va~~~~~l~~~~~~~~~G~~ 249 (259)
T PRK08213 224 LGDDEDLKGAALLLASDASKHITGQI 249 (259)
T ss_pred CcCHHHHHHHHHHHhCccccCccCCE
Confidence 567999999999988653 345644
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=171.50 Aligned_cols=208 Identities=19% Similarity=0.145 Sum_probs=150.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------GC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~ 80 (322)
++|+|+||||+|+||++++++|+++|++|++++|+..... ...++.+|++|+++++++++ ++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~------------~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 69 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDF------------PGELFACDLADIEQTAATLAQINEIHPV 69 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccccc------------CceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999999999999999764311 12568899999998877665 57
Q ss_pred CEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 81 DGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|+|||+||..... ..+.+...+++|+.++.++.+++.+. .+.+++|++||. ..++.+.
T Consensus 70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~-~~~~~~~------------- 135 (234)
T PRK07577 70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSR-AIFGALD------------- 135 (234)
T ss_pred cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccc-cccCCCC-------------
Confidence 9999999975331 22345568899999999998777542 256799999998 4443321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.+|.+.+.+++.++.+. |++++++|||.+.++......+............. ....+..
T Consensus 136 ---------~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 202 (234)
T PRK07577 136 ---------RTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI----PMRRLGT 202 (234)
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC----CCCCCcC
Confidence 1459999999999999887653 99999999999998764322111111112222221 2233557
Q ss_pred HHHHHHHHHHhhcCC--CCCccE-EEe
Q 020747 230 IRDVVYAHIRALEVP--KASGRY-LLA 253 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~-~~~ 253 (322)
++|+|++++.++..+ ...|.+ .+.
T Consensus 203 ~~~~a~~~~~l~~~~~~~~~g~~~~~~ 229 (234)
T PRK07577 203 PEEVAAAIAFLLSDDAGFITGQVLGVD 229 (234)
T ss_pred HHHHHHHHHHHhCcccCCccceEEEec
Confidence 999999999999764 245644 443
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=176.35 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=155.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ....++.....++..+.+|++|+++++++++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALE-KLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999998754321 2222222223568889999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||.... ...+.+.+.+++|+.++..+++++.+.+ + .+++|++||..+......
T Consensus 86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~---------- 155 (253)
T PRK05867 86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVP---------- 155 (253)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCC----------
Confidence 68999999996432 2233456788999999999999986532 1 247999998744321110
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
.. ...|+.+|++.+.+++.++.++ |+++++++||.+-++..... ......+.... ....
T Consensus 156 ----~~------~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~----~~~~~~~~~~~----~~~r 217 (253)
T PRK05867 156 ----QQ------VSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY----TEYQPLWEPKI----PLGR 217 (253)
T ss_pred ----CC------ccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc----hHHHHHHHhcC----CCCC
Confidence 00 1349999999999999998875 89999999999988764321 11111222222 3345
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+..++|+|+++++++... ..+|..+..
T Consensus 218 ~~~p~~va~~~~~L~s~~~~~~tG~~i~v 246 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSYMTGSDIVI 246 (253)
T ss_pred CcCHHHHHHHHHHHcCcccCCcCCCeEEE
Confidence 678999999999999753 345644333
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-23 Score=175.42 Aligned_cols=215 Identities=17% Similarity=0.132 Sum_probs=148.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
++++||||+|+||++++++|+++|++|+++.++......+....+...+.++..+++|++|+++++++++ .+|
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id 81 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA 81 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999999998754332221112222222223468889999999998887766 468
Q ss_pred EEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC------CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 82 GVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH------SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 82 ~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
+|||+||.... .....+...+++|+.++.++++++.+.. +.++||++||..++++.+..
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~--------- 152 (247)
T PRK09730 82 ALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGE--------- 152 (247)
T ss_pred EEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCc---------
Confidence 99999996422 1122345789999999998888765531 13569999998666543310
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.+|...+.+++.++.++ +++++++|||.+++|...... ............ +...
T Consensus 153 ------------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~--~~~~~~~~~~~~----~~~~ 214 (247)
T PRK09730 153 ------------YVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG--EPGRVDRVKSNI----PMQR 214 (247)
T ss_pred ------------ccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC--CHHHHHHHHhcC----CCCC
Confidence 0249999999999999887654 899999999999999643221 122222222222 1122
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
..+++|+++++++++... ...|.+
T Consensus 215 ~~~~~dva~~~~~~~~~~~~~~~g~~ 240 (247)
T PRK09730 215 GGQPEEVAQAIVWLLSDKASYVTGSF 240 (247)
T ss_pred CcCHHHHHHHHHhhcChhhcCccCcE
Confidence 347999999999988754 244544
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=175.52 Aligned_cols=217 Identities=21% Similarity=0.163 Sum_probs=150.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+|+||||+|+||+++++.|+++|++|+++.++..+.......++.....++..+++|++++++++++++ .+|
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 82 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLD 82 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence 7999999999999999999999999998776543322212222222223468899999999988876654 589
Q ss_pred EEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC------ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 82 GVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS------IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 82 ~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
+|||+||.... ...+.+...+++|+.++.++++++.+.+. -.+||++||.+++++....
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~--------- 153 (248)
T PRK06947 83 ALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNE--------- 153 (248)
T ss_pred EEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCC---------
Confidence 99999996432 12223456789999999999876554322 2369999998666543320
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.||.+.+.+++.++.++ |++++++|||.+.++....... ......... .. ....
T Consensus 154 ------------~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~-~~---~~~~ 215 (248)
T PRK06947 154 ------------YVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ--PGRAARLGA-QT---PLGR 215 (248)
T ss_pred ------------CcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC--HHHHHHHhh-cC---CCCC
Confidence 0349999999999999998775 8999999999999886432111 111111111 11 2222
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCccEEE
Q 020747 227 FVEIRDVVYAHIRALEVPK--ASGRYLL 252 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~--~~g~~~~ 252 (322)
+..++|+++.+++++.++. ..|.++.
T Consensus 216 ~~~~e~va~~~~~l~~~~~~~~~G~~~~ 243 (248)
T PRK06947 216 AGEADEVAETIVWLLSDAASYVTGALLD 243 (248)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCceEe
Confidence 4679999999999988653 4565543
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=172.29 Aligned_cols=167 Identities=24% Similarity=0.256 Sum_probs=131.9
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
||. +++++|+||||+|+||++++++|+++|+ +|++++|+.++.. + ...++.++.+|++|+++++++++
T Consensus 1 ~~~--~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~-----~---~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 1 MMD--IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT-----D---LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCC--CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh-----h---cCCceEEEEecCCCHHHHHHHHHh
Confidence 544 4568999999999999999999999998 9999998764421 1 23468899999999999888877
Q ss_pred --CCCEEEEcccCcc-c-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVI-F-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|+|||+||... . ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+...
T Consensus 71 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~-------- 142 (238)
T PRK08264 71 ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPN-------- 142 (238)
T ss_pred cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCC--------
Confidence 4799999999722 1 223345678899999999999997642 24678999999855443221
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPF 199 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~ 199 (322)
...|+.+|.+++.+.+.++.+. +++++++|||.+.++.
T Consensus 143 --------------~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 143 --------------LGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred --------------chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 1559999999999999988764 8999999999998775
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=177.96 Aligned_cols=195 Identities=17% Similarity=0.164 Sum_probs=145.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+|+||||+|+||++++++|+++|++|++++|+..... +...++... .++.++++|++|+++++++++ .+|
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQ-AFAARLPKA-ARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhcccC-CeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 79999999999999999999999999999998753321 112222221 268899999999998877665 379
Q ss_pred EEEEcccCcccC------CCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 82 GVFHTASPVIFL------SDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 82 ~vih~A~~~~~~------~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++||+||..... ..+.+...+++|+.|+.++++++. +. +.++||++||..++++.+..
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~-~~~~iv~isS~~~~~~~~~~----------- 148 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAA-RRGTLVGIASVAGVRGLPGA----------- 148 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhc-CCCEEEEEechhhcCCCCCC-----------
Confidence 999999964321 113456789999999999888543 33 45799999998666544321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.||.+.+.+++.++.+ +|++++++|||.+.++...... . ....++
T Consensus 149 -----------~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~-------------~----~~~~~~ 200 (257)
T PRK07024 149 -----------GAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNP-------------Y----PMPFLM 200 (257)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcCC-------------C----CCCCcc
Confidence 34999999999999888754 4999999999999987532110 0 001135
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020747 229 EIRDVVYAHIRALEVPK 245 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~ 245 (322)
.++|+++.++.++.+++
T Consensus 201 ~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 201 DADRFAARAARAIARGR 217 (257)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 79999999999998753
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-23 Score=176.80 Aligned_cols=223 Identities=18% Similarity=0.205 Sum_probs=151.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh---hhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT---EHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+|+||.+++++|+++|++|+++.++...... ....++...+.++.++++|++++++++++++
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999998777765432211 1122222223468889999999998887665
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEe-cchhhhccCCCCCCCCcccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLT-SSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~-SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.+...+++|+.++..+++++.+.+. .++++++ ||....+...
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~~---------- 155 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTPF---------- 155 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCCC----------
Confidence 57999999996321 22334667899999999999999876532 2466765 4432222111
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-C
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-F 223 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~ 223 (322)
.+.|+.||++.|.+++.++.+. |+++++++||.+.++...+.... .... ..... ...+ .
T Consensus 156 -------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~--~~~~-~~~~~~~~~~~~ 219 (257)
T PRK12744 156 -------------YSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGA--EAVA-YHKTAAALSPFS 219 (257)
T ss_pred -------------cccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccccc--chhh-cccccccccccc
Confidence 1459999999999999999875 79999999999988754321111 0000 00000 1111 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC-CCCc-cEEEec
Q 020747 224 PYIFVEIRDVVYAHIRALEVP-KASG-RYLLAG 254 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~-~~~g-~~~~~~ 254 (322)
...+.+++|+++++.++++.. ...| .+++.+
T Consensus 220 ~~~~~~~~dva~~~~~l~~~~~~~~g~~~~~~g 252 (257)
T PRK12744 220 KTGLTDIEDIVPFIRFLVTDGWWITGQTILING 252 (257)
T ss_pred cCCCCCHHHHHHHHHHhhcccceeecceEeecC
Confidence 346889999999999999853 2245 444443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=174.04 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=154.0
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|+..+++|+++||||+|+||++++++|+++|++|+++.|+..+. ...+.. .++.++.+|++|+++++++++
T Consensus 1 m~~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~----~~~l~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 1 YSMRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE----AKELRE--KGVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH----HHHHHh--CCCeEEEecCCCHHHHHHHHHHHH
Confidence 44446679999999999999999999999999998887654321 112211 146789999999998887765
Q ss_pred ----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+...+++|+.++..+++++.+. .+.++||++||..++.....
T Consensus 75 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~------- 147 (255)
T PRK06463 75 KEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAE------- 147 (255)
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCC-------
Confidence 57999999986432 223346678999999987776665442 14569999999855432111
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc-cHHHHHH-HHcCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF-GAEVILN-LINGDQSF 221 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~-~~~g~~~~ 221 (322)
. ...|+.||++.+.+++.++.+. |+++++++||.+-.+........ ....... +....
T Consensus 148 --------~------~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--- 210 (255)
T PRK06463 148 --------G------TTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKT--- 210 (255)
T ss_pred --------C------ccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCC---
Confidence 0 1459999999999999998763 89999999999977653221111 0011111 12221
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
....+..++|+++++++++... ...|.. .+.++
T Consensus 211 -~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 246 (255)
T PRK06463 211 -VLKTTGKPEDIANIVLFLASDDARYITGQVIVADGG 246 (255)
T ss_pred -CcCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 3445678999999999998754 245644 55443
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=173.35 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=158.0
Q ss_pred CCCCCCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-
Q 020747 2 MSGEGEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
|+..+++|+++||||+ +.||++++++|+++|++|++.+|+. +. .+.+.++. ..++..+++|++|+++++++++
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~-~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RM-KKSLQKLV--DEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HH-HHHHHhhc--cCceeEEeCCCCCHHHHHHHHHH
Confidence 5666788999999999 7999999999999999999998863 21 12222222 2357889999999998876654
Q ss_pred ------CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCC
Q 020747 79 ------GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 79 ------~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
++|++||+||.... ...+.+...+++|+.++..+++++.+.+ ..+++|++||..+..+.+.
T Consensus 77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~--- 153 (252)
T PRK06079 77 IKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIPN--- 153 (252)
T ss_pred HHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCCc---
Confidence 47999999996421 2233467789999999999999987753 2358999999744322211
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ 219 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 219 (322)
...|+.||++.+.+.+.++.+. |++++.|.||.|-++..... ..............
T Consensus 154 -------------------~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~- 212 (252)
T PRK06079 154 -------------------YNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGI-KGHKDLLKESDSRT- 212 (252)
T ss_pred -------------------chhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccC-CChHHHHHHHHhcC-
Confidence 1459999999999999999874 89999999999988753221 11111222222211
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+++++.+++... ...|..+..
T Consensus 213 ---p~~r~~~pedva~~~~~l~s~~~~~itG~~i~v 245 (252)
T PRK06079 213 ---VDGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYV 245 (252)
T ss_pred ---cccCCCCHHHHHHHHHHHhCcccccccccEEEe
Confidence 3345778999999999999753 345655433
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=177.49 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=149.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
++|+||||+|+||++++++|+++|++|++++|+..... .....+...+.++..+.+|++|+++++.+++ ++|
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLA-SLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999998754321 1222222234578899999999998887766 579
Q ss_pred EEEEcccCcccC------CCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIFL------SDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~~------~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|||+||..... ..+.+.+.+++|+.++.++++.+.+.+ +.+++|++||..++.+...
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------------- 146 (263)
T PRK06181 81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPT-------------- 146 (263)
T ss_pred EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCC--------------
Confidence 999999864331 122245679999999999999986431 3478999999855543321
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC--CC-CCCcc
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS--FA-FPYIF 227 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~--~~-~~~~~ 227 (322)
...|+.+|.+.+.+.+.++.+ .++++++++||.+.++........ .+.+. .+ +..++
T Consensus 147 --------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~---------~~~~~~~~~~~~~~~ 209 (263)
T PRK06181 147 --------RSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDG---------DGKPLGKSPMQESKI 209 (263)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhccc---------cccccccccccccCC
Confidence 145999999999999888765 489999999999988753321110 01110 11 33578
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020747 228 VEIRDVVYAHIRALEVP 244 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~ 244 (322)
++++|+|++++.+++.+
T Consensus 210 ~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 210 MSAEECAEAILPAIARR 226 (263)
T ss_pred CCHHHHHHHHHHHhhCC
Confidence 99999999999999863
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=175.36 Aligned_cols=228 Identities=20% Similarity=0.244 Sum_probs=152.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 78 (322)
++|+|+||||+|+||++++++|+++|++|++++|+.... .++.. .+++.+.+|++|+++++++++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~-----~~l~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDV-----AALEA--EGLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-----HHHHH--CCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999999999999999976432 22211 247889999999988776654
Q ss_pred CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHH----HHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLN----VLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~----l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||..... ..+.+...+++|+.|+.+ ++..+++. +.++||++||..++.+.+.
T Consensus 76 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~-~~g~iv~isS~~~~~~~~~---------- 144 (277)
T PRK05993 76 RLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ-GQGRIVQCSSILGLVPMKY---------- 144 (277)
T ss_pred CccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc-CCCEEEEECChhhcCCCCc----------
Confidence 469999999864321 122345689999999555 45555554 5679999999855432221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCcc-----------HHH----H
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFG-----------AEV----I 211 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~-----------~~~----~ 211 (322)
.+.|+.||++.+.+++.++.+ +|+++++++||.+-++......... ... .
T Consensus 145 ------------~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (277)
T PRK05993 145 ------------RGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQM 212 (277)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 145999999999999988755 4999999999999887533211000 000 0
Q ss_pred HHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 020747 212 LNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 271 (322)
Q Consensus 212 ~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~ 271 (322)
.+..... ......+.++++|+.++.++++++....|..+.. ..+...+.+.+|
T Consensus 213 ~~~~~~~---~~~~~~~~~~~va~~i~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~p 265 (277)
T PRK05993 213 ARLEGGG---SKSRFKLGPEAVYAVLLHALTAPRPRPHYRVTTP----AKQGALLKRLLP 265 (277)
T ss_pred HHHHhhh---hccccCCCHHHHHHHHHHHHcCCCCCCeeeeCch----hHHHHHHHHHCC
Confidence 0000000 0111235799999999999998764444544321 234445555554
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=175.86 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=156.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+++||||+|.||++++++|+++|++|++++|+..+.. ....++.. .+.++..+++|++|+++++++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLK-KAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999998754321 11122211 13468899999999998887775
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||.... ...+.+++.+++|+.++..+++++.+.+ +.+++|++||..+..+.+.
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~---------- 153 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPN---------- 153 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCc----------
Confidence 47999999986422 2334577889999999888887776532 4578999999854332221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC--------CCccHHHHHHHHcCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI--------LNFGAEVILNLINGD 218 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~ 218 (322)
...|+.+|.+.+.+.+.++.+. |++++.+.||.|.++..... ..........+....
T Consensus 154 ------------~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (263)
T PRK08339 154 ------------IALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPI 221 (263)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccC
Confidence 1459999999999999999875 89999999999987642110 000011111222111
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+++++.+++... ..+|.++..
T Consensus 222 ----p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~v 254 (263)
T PRK08339 222 ----PLGRLGEPEEIGYLVAFLASDLGSYINGAMIPV 254 (263)
T ss_pred ----CcccCcCHHHHHHHHHHHhcchhcCccCceEEE
Confidence 3445678999999999998753 346655433
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=173.47 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=149.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+|+||++++++|+++|++|++..++........+.++...+.++..+.+|++|.++++++++ .
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999988765433222212333333234567788999999998877664 5
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+++.+++|+.++.++++++.+. .+.++||++||..+..+...
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------ 149 (246)
T PRK12938 82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFG------------ 149 (246)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCC------------
Confidence 7999999997532 223456778999999988887776542 25579999999854433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
.+.|+.+|.+.+.+.+.++++ .|+++++++||.+.++..... .......+.... ....+.
T Consensus 150 ----------~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~----~~~~~~ 212 (246)
T PRK12938 150 ----------QTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI---RPDVLEKIVATI----PVRRLG 212 (246)
T ss_pred ----------ChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhc---ChHHHHHHHhcC----CccCCc
Confidence 145999999999999888876 489999999999998864321 122222222222 334467
Q ss_pred eHHHHHHHHHHhhcCC
Q 020747 229 EIRDVVYAHIRALEVP 244 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~ 244 (322)
.++|+++++++++...
T Consensus 213 ~~~~v~~~~~~l~~~~ 228 (246)
T PRK12938 213 SPDEIGSIVAWLASEE 228 (246)
T ss_pred CHHHHHHHHHHHcCcc
Confidence 8999999999998753
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=175.41 Aligned_cols=221 Identities=19% Similarity=0.164 Sum_probs=155.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||++++++|+++|++|++++|+... .+...++.....++..+++|++++++++++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEI--EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH--HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999999999987531 12222222223567889999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhh-ccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAM-LLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~-~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... .....+++.+++|+.++.++++++.+. .+.++||++||..+. .+.+.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~---------- 151 (263)
T PRK08226 82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPG---------- 151 (263)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCC----------
Confidence 57999999996432 122234557899999999999987653 144689999997442 11111
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC----C-ccHHHHHHHHcCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL----N-FGAEVILNLINGDQSF 221 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~----~-~~~~~~~~~~~g~~~~ 221 (322)
...|+.+|.+.+.+++.++.++ +++++.++||.+.++...... + .....+..+..+.
T Consensus 152 ------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (263)
T PRK08226 152 ------------ETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAI--- 216 (263)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccC---
Confidence 1459999999999999998875 899999999999987532110 0 1111222333222
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
+...+..++|+++++++++... ...|..+..+
T Consensus 217 -p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~d 250 (263)
T PRK08226 217 -PLRRLADPLEVGELAAFLASDESSYLTGTQNVID 250 (263)
T ss_pred -CCCCCCCHHHHHHHHHHHcCchhcCCcCceEeEC
Confidence 3344678999999999988643 4566554433
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=173.98 Aligned_cols=218 Identities=14% Similarity=0.103 Sum_probs=156.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|+++++.... +....+.....++..+++|++|+++++++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPT---ETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchH---HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567999999999999999999999999999988765422 2222222223568889999999998887775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.+.+.+++|+.++.++++++.+.+ + .+++|++||..++.+....
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 155 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRV--------- 155 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCC---------
Confidence 47999999996432 2234577899999999999999886532 1 2589999998554432210
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.+|++.+.+.+.++.+ +|++++.++||.+-.+..... .........+.... +...
T Consensus 156 -------------~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~-~~~~~~~~~~~~~~----p~~r 217 (253)
T PRK08993 156 -------------PSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQL-RADEQRSAEILDRI----PAGR 217 (253)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhh-ccchHHHHHHHhcC----CCCC
Confidence 34999999999999999887 489999999999988754321 11111111222111 2344
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+..++|+++.+++++... ...|..+..
T Consensus 218 ~~~p~eva~~~~~l~s~~~~~~~G~~~~~ 246 (253)
T PRK08993 218 WGLPSDLMGPVVFLASSASDYINGYTIAV 246 (253)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEEE
Confidence 677999999999999754 345655433
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=180.62 Aligned_cols=211 Identities=18% Similarity=0.120 Sum_probs=152.2
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||...+++++|+||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+++|++|+++++++++
T Consensus 1 ~~~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~-~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 1 MMLKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLE-ALAAEIRAAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 5555567789999999999999999999999999999998754321 1222222224568899999999999887754
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||.... ...+.+...+++|+.++.++.+++.+.+ +.++||++||..++.+.+.
T Consensus 80 ~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~------ 153 (334)
T PRK07109 80 EEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPL------ 153 (334)
T ss_pred HHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCc------
Confidence 58999999986322 2234456788999998888777665431 4578999999855533221
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
.+.|+.+|.+.+.+.+.++.+. ++++++++||.+.+|.... ........ .
T Consensus 154 ----------------~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~--------~~~~~~~~-~ 208 (334)
T PRK07109 154 ----------------QSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW--------ARSRLPVE-P 208 (334)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh--------hhhhcccc-c
Confidence 1559999999999998887663 6999999999998774221 01111100 0
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
. ....+..++|+|++++.+++++
T Consensus 209 ~-~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 209 Q-PVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred c-CCCCCCCHHHHHHHHHHHHhCC
Confidence 0 2334568999999999999875
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=172.64 Aligned_cols=225 Identities=16% Similarity=0.086 Sum_probs=155.9
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|...+++|+++||||+|+||++++++|+++|++|+++.|+..+.......++.....++..+.+|++|.+++.++++
T Consensus 1 ~~~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 1 MYSDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred CccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 34457789999999999999999999999999998888754332222222232234567889999999998877665
Q ss_pred ----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||.... ...+.+.+.+++|+.++.++++++.+.+ + .+++|++||..+..+.+.
T Consensus 81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~------ 154 (261)
T PRK08936 81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPL------ 154 (261)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCC------
Confidence 47999999996432 1223456778999999887766654321 2 368999999744332211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.+|++.+.+.+.++.++ |++++.++||.+.++........ ...........
T Consensus 155 ----------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~-~~~~~~~~~~~---- 213 (261)
T PRK08936 155 ----------------FVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD-PKQRADVESMI---- 213 (261)
T ss_pred ----------------CcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC-HHHHHHHHhcC----
Confidence 1459999999999999888765 89999999999998864322211 11122222211
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
....+..++|+++++++++... ...|.++..
T Consensus 214 ~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~ 246 (261)
T PRK08936 214 PMGYIGKPEEIAAVAAWLASSEASYVTGITLFA 246 (261)
T ss_pred CCCCCcCHHHHHHHHHHHcCcccCCccCcEEEE
Confidence 3345677999999999998753 345655433
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=172.88 Aligned_cols=220 Identities=18% Similarity=0.166 Sum_probs=154.3
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||+ +++++++||||+|+||++++++|+++|+.|++.+|+..... .+... ...++.++.+|+++.++++++++
T Consensus 1 ~~~--~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~--~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 1 MFD--LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLE--ALAAE--LGERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CcC--CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH--HHHHH--hCCceEEEEccCCCHHHHHHHHHHH
Confidence 553 56789999999999999999999999999888777643321 11111 12467889999999998877643
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... .....+.+.+++|+.++.++++++.+. .+.++||++||..++++.+..
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----- 149 (245)
T PRK12936 75 EADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQ----- 149 (245)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCC-----
Confidence 58999999996432 123355678999999999999887542 245789999998666654321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
..|+.+|.+.+.+++.++++. ++++++++||.+.++..... . ...........
T Consensus 150 -----------------~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~-~--~~~~~~~~~~~---- 205 (245)
T PRK12936 150 -----------------ANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKL-N--DKQKEAIMGAI---- 205 (245)
T ss_pred -----------------cchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhccc-C--hHHHHHHhcCC----
Confidence 349999999999988887663 89999999998877643221 1 11111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
....+.+++|+++++.+++.... ..| .+++.++
T Consensus 206 ~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 206 PMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 33446789999999998886532 345 4455443
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=177.51 Aligned_cols=222 Identities=18% Similarity=0.118 Sum_probs=148.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +...++ .++.++.+|++|.++++++++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~-~~~~~l----~~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAR-EALAGI----DGVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh----hhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999998754321 112222 237889999999998877664
Q ss_pred CCCEEEEcccCccc---CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|+|||+||.... ...+.++..+++|+.++..+++++.+. .+.++||++||.....+... ....+...+
T Consensus 99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~----~~~~~~~~~ 174 (315)
T PRK06196 99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIR----WDDPHFTRG 174 (315)
T ss_pred CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCC----ccccCccCC
Confidence 58999999996432 223445778999999988887766542 14469999999844322111 000111111
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC-Ccce
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP-YIFV 228 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~i 228 (322)
.. +...|+.||.+.+.+++.++.+ .|+++++++||.+.++..... .............. .. .. ..+.
T Consensus 175 ~~------~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~ 245 (315)
T PRK06196 175 YD------KWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHL-PREEQVALGWVDEH-GN-PIDPGFK 245 (315)
T ss_pred CC------hHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccC-Chhhhhhhhhhhhh-hh-hhhhhcC
Confidence 11 1256999999999999988775 389999999999999864321 11000000011000 00 11 1245
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020747 229 EIRDVVYAHIRALEVPK 245 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~ 245 (322)
.++|+|..+++++..+.
T Consensus 246 ~~~~~a~~~~~l~~~~~ 262 (315)
T PRK06196 246 TPAQGAATQVWAATSPQ 262 (315)
T ss_pred CHhHHHHHHHHHhcCCc
Confidence 78999999999987543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=176.31 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=149.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+|+||||+|+||++++++|+++|++|++++|+..... ....++...+.++.++++|++|+++++++++ ++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGE-ETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999999999999999999998764321 2222232234568889999999988877665 589
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|||+||.... ...+.+++.+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~-------------- 145 (270)
T PRK05650 80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPA-------------- 145 (270)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCC--------------
Confidence 99999997532 112234557889999999988776432 25679999999855543321
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
.+.|+.+|++.+.+.+.++.++ |+++++++||.+.++........... ........ ....++++
T Consensus 146 --------~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~ 212 (270)
T PRK05650 146 --------MSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPA-MKAQVGKL----LEKSPITA 212 (270)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchh-HHHHHHHH----hhcCCCCH
Confidence 1459999999999999998874 89999999999998864432111111 11111100 12345789
Q ss_pred HHHHHHHHHhhcCC
Q 020747 231 RDVVYAHIRALEVP 244 (322)
Q Consensus 231 ~D~a~~~~~~~~~~ 244 (322)
+|+|+.++.+++++
T Consensus 213 ~~vA~~i~~~l~~~ 226 (270)
T PRK05650 213 ADIADYIYQQVAKG 226 (270)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999874
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-23 Score=173.46 Aligned_cols=216 Identities=18% Similarity=0.165 Sum_probs=155.2
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCCEE
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCDGV 83 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~v 83 (322)
|+|||++|+||++++++|+++|++|++++|+..+........+...+.++..+.+|++|+++++++++ .+|+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 58999999999999999999999999998875322112222222234468899999999998887765 36999
Q ss_pred EEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 84 FHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 84 ih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
||+||.... .....+...+++|+.++.++++++.+. .+.++||++||..++++.+..
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~~--------------- 145 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQ--------------- 145 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCC---------------
Confidence 999997532 223445678999999999999998753 245699999998666654321
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHH
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D 232 (322)
..|+.+|.+.+.+++.++++ .|++++++|||.+.++..... .......+.... ....+.+++|
T Consensus 146 -------~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~ 211 (239)
T TIGR01830 146 -------ANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKL---SEKVKKKILSQI----PLGRFGTPEE 211 (239)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhc---ChHHHHHHHhcC----CcCCCcCHHH
Confidence 45999999999999888776 499999999999877643221 111222222222 3345678999
Q ss_pred HHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 233 VVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 233 ~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
++++++.++... ...| .|++.++
T Consensus 212 ~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 212 VANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 999999988553 2345 5566543
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=174.46 Aligned_cols=218 Identities=16% Similarity=0.100 Sum_probs=156.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+.+|+++||||+|+||++++++|+++|++|++++|+.+... +....+...+.++..+++|++|+++++++++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVD-KGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999999988764331 2222222223468899999999998887775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+.+.+++|+.++..+++++.+.+ +.++||++||..+.++.+..
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 156 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETV---------- 156 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCC----------
Confidence 37999999997542 2234456788899999999888876531 45799999998555543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC-----ccHHHHHHHHcCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN-----FGAEVILNLINGDQSFA 222 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~-----~~~~~~~~~~~g~~~~~ 222 (322)
..|+.+|.+.+.+++.++++. |++++.++||.+.++....... ....+...+....
T Consensus 157 ------------~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (265)
T PRK07097 157 ------------SAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT---- 220 (265)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC----
Confidence 459999999999999999875 8999999999999885432110 0001111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
....+..++|+|+.++.++... ..+|..
T Consensus 221 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~ 250 (265)
T PRK07097 221 PAARWGDPEDLAGPAVFLASDASNFVNGHI 250 (265)
T ss_pred CccCCcCHHHHHHHHHHHhCcccCCCCCCE
Confidence 2334678999999999999763 345644
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=160.81 Aligned_cols=290 Identities=16% Similarity=0.126 Sum_probs=212.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCe-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYT-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 82 (322)
+..+|||||+-|.+|..++..|..+ |.+ |+.-+-...+. .. ...-.++..|+.|...+++.+- .+|.
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~---~V------~~~GPyIy~DILD~K~L~eIVVn~RIdW 113 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPA---NV------TDVGPYIYLDILDQKSLEEIVVNKRIDW 113 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCch---hh------cccCCchhhhhhccccHHHhhcccccce
Confidence 4579999999999999999988876 544 55444332221 11 1123678899999999998764 6899
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
+||..+..+...+.+-....++|+.|.-|+++.+++. +. ++...|++.++ |...+ ..|.+.-+...|.
T Consensus 114 L~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL-~iFVPSTIGAF-GPtSP---RNPTPdltIQRPR------ 181 (366)
T KOG2774|consen 114 LVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KL-KVFVPSTIGAF-GPTSP---RNPTPDLTIQRPR------ 181 (366)
T ss_pred eeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-Ce-eEeeccccccc-CCCCC---CCCCCCeeeecCc------
Confidence 9999997655334444567899999999999999997 54 56667777444 44332 3333333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc--cHHHHHHH-HcCC---CCCC-CCCcceeHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF--GAEVILNL-INGD---QSFA-FPYIFVEIRDVVY 235 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~-~~g~---~~~~-~~~~~i~~~D~a~ 235 (322)
..||.||.-+|.+-+.+..++|+.+-.+|.+.+....-.+.... ....+..+ .+|+ .+-| ...++.|.+||.+
T Consensus 182 TIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~ 261 (366)
T KOG2774|consen 182 TIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMA 261 (366)
T ss_pred eeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHH
Confidence 67999999999999999999999999999999987543333222 12333444 4565 3345 8889999999999
Q ss_pred HHHHhhcCCC---CCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc----cCCCCccccchHHH-HhhCCcc-cchhh
Q 020747 236 AHIRALEVPK---ASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE----EKYQPTIKVSQERA-KSLGINF-TPWEV 306 (322)
Q Consensus 236 ~~~~~~~~~~---~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~k~-~~lg~~~-~~~~~ 306 (322)
+++.++..+. ...+||+++-..|..|+++.+.+.+|...+.+... ..+.++..+|.+.+ .++.|+. ..+..
T Consensus 262 ~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~ 341 (366)
T KOG2774|consen 262 SVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLS 341 (366)
T ss_pred HHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHH
Confidence 9999998753 23489999999999999999999998776555433 56778899999998 8999998 88877
Q ss_pred hHHHHHHHHHH
Q 020747 307 GVRGCIESLME 317 (322)
Q Consensus 307 ~l~~~~~~~~~ 317 (322)
-+.-+++-.++
T Consensus 342 ~i~~~i~~~~~ 352 (366)
T KOG2774|consen 342 IISTVVAVHKS 352 (366)
T ss_pred HHHHHHHHHHh
Confidence 77666655443
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=171.63 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=156.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.....++..+.+|++|+++++++++
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999999999988754321 1112222223467889999999998876654
Q ss_pred CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.+++|++||..+..+...
T Consensus 88 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------ 155 (255)
T PRK06113 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNIN------------ 155 (255)
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCC------------
Confidence 47999999996432 1223455668999999999999987431 3458999999854432221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|++.+.+++.++.+. ++++++++||.+..+...... ......+..... +...+.
T Consensus 156 ----------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~----~~~~~~ 219 (255)
T PRK06113 156 ----------MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHT----PIRRLG 219 (255)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccccc--CHHHHHHHHhcC----CCCCCc
Confidence 1459999999999999998763 899999999999887543211 122222223222 334567
Q ss_pred eHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 229 EIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
.++|+++++++++... ...|. +.+.++
T Consensus 220 ~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg 249 (255)
T PRK06113 220 QPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 8999999999999753 23564 455443
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=172.09 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=145.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC----CCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG----CDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~d~vi 84 (322)
++++||||+|+||++++++|+++|++|++++|+... +.++.....++.++++|++|++++++++++ +|.+|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i 76 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV-----LDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWI 76 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH-----HHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence 689999999999999999999999999999987532 222222224578899999999999988774 58999
Q ss_pred EcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020747 85 HTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC 158 (322)
Q Consensus 85 h~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (322)
|+||.... ...+.+.+.+++|+.++.++++++.+.+ +.+++|++||..+.++.+..
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~------------------ 138 (240)
T PRK06101 77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPRA------------------ 138 (240)
T ss_pred EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCCC------------------
Confidence 99985322 1222345789999999999999998742 23579999997555543221
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHH
Q 020747 159 KENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVY 235 (322)
Q Consensus 159 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~ 235 (322)
..|+.+|.+.+.+.+.++.+ +|++++++|||.++++....... .....+.++|+|+
T Consensus 139 ----~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~-----------------~~~~~~~~~~~a~ 197 (240)
T PRK06101 139 ----EAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTF-----------------AMPMIITVEQASQ 197 (240)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCC-----------------CCCcccCHHHHHH
Confidence 45999999999999988854 49999999999999975432100 0011357999999
Q ss_pred HHHHhhcCCC
Q 020747 236 AHIRALEVPK 245 (322)
Q Consensus 236 ~~~~~~~~~~ 245 (322)
.++..++.+.
T Consensus 198 ~i~~~i~~~~ 207 (240)
T PRK06101 198 EIRAQLARGK 207 (240)
T ss_pred HHHHHHhcCC
Confidence 9999998753
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=175.22 Aligned_cols=197 Identities=20% Similarity=0.145 Sum_probs=145.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||++++++|+++|++|++.+|+..... .....+ .++..+.+|++|+++++++++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAK-ETAAEL----GLVVGGPLDVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh----ccceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999988653321 111111 247889999999998766554
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 146 (273)
T PRK07825 78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPG----------- 146 (273)
T ss_pred CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCC-----------
Confidence 57999999996432 122345678899999999988887653 25678999999855543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++..... .+. ....+
T Consensus 147 -----------~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~------------~~~----~~~~~ 199 (273)
T PRK07825 147 -----------MATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGT------------GGA----KGFKN 199 (273)
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccc------------ccc----cCCCC
Confidence 1459999999998888887664 89999999999876542210 000 22356
Q ss_pred eeHHHHHHHHHHhhcCCC
Q 020747 228 VEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~ 245 (322)
++++|+|++++.++.++.
T Consensus 200 ~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 200 VEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 889999999999998754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=171.06 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=150.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.|++++|+||||+|+||++++++|+++|++|++++|+..... ....++ ...++++|++|+++++++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK-AAADEV-----GGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHc-----CCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 366799999999999999999999999999999998753321 111111 12578899999998887776
Q ss_pred -CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++.+.+. .+.+++|++||..+.++....
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~~------- 150 (255)
T PRK06057 78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATS------- 150 (255)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCCC-------
Confidence 57999999986432 111235678899999999988887542 145689999997565543210
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.+|++.+.+++.++.++ |++++++|||.+.++..............+.... . ..
T Consensus 151 --------------~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~---~-~~ 212 (255)
T PRK06057 151 --------------QISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLVH---V-PM 212 (255)
T ss_pred --------------CcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhc---C-CC
Confidence 0349999999888888776653 8999999999999886433221111111111111 1 33
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
..+.+++|+++++..++... ...|..
T Consensus 213 ~~~~~~~~~a~~~~~l~~~~~~~~~g~~ 240 (255)
T PRK06057 213 GRFAEPEEIAAAVAFLASDDASFITAST 240 (255)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCcE
Confidence 46789999999999888653 344543
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=172.83 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=152.8
Q ss_pred CCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+|++|+++||||++ .||++++++|+++|++|++.+|+.... +...++.........+++|++|+++++++++
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~--~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALG--KRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHH--HHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 45679999999997 999999999999999999988764211 1222221111123468999999998887665
Q ss_pred ---CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||... +.+.+.+...+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~------ 155 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMPN------ 155 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCCc------
Confidence 4799999999642 123445678899999999999998876432 258999999854432221
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||++.+.+.+.++.++ |++++.|.||.+.++..... .. ............
T Consensus 156 ----------------~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~-~~-~~~~~~~~~~~~--- 214 (271)
T PRK06505 156 ----------------YNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGI-GD-ARAIFSYQQRNS--- 214 (271)
T ss_pred ----------------cchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccC-cc-hHHHHHHHhhcC---
Confidence 1459999999999999999874 89999999999988753211 11 111111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+|+++++++... ..+|..+..
T Consensus 215 p~~r~~~peeva~~~~fL~s~~~~~itG~~i~v 247 (271)
T PRK06505 215 PLRRTVTIDEVGGSALYLLSDLSSGVTGEIHFV 247 (271)
T ss_pred CccccCCHHHHHHHHHHHhCccccccCceEEee
Confidence 2234567999999999999753 345655433
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=171.56 Aligned_cols=215 Identities=20% Similarity=0.191 Sum_probs=155.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++++++||||+|+||++++++|+++|++|+++ +|+..... .....+.....++.++.+|++|++++.++++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQ-ELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999988 77653321 1222222224568899999999998877765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+. .+.+++|++||...+++.+..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~--------- 152 (247)
T PRK05565 82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCE--------- 152 (247)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCc---------
Confidence 68999999997522 223345678999999999998887653 145679999998666654321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.+|.+.+.+++.++.+. |++++++|||.+.++....... .....+.... ....
T Consensus 153 -------------~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~---~~~~~~~~~~----~~~~ 212 (247)
T PRK05565 153 -------------VLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSE---EDKEGLAEEI----PLGR 212 (247)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccCh---HHHHHHHhcC----CCCC
Confidence 459999999999988888764 8999999999998765433211 1111111111 3345
Q ss_pred ceeHHHHHHHHHHhhcCCC--CCccE
Q 020747 227 FVEIRDVVYAHIRALEVPK--ASGRY 250 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~--~~g~~ 250 (322)
+..++|++++++.++.... .+|.+
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~ 238 (247)
T PRK05565 213 LGKPEEIAKVVLFLASDDASYITGQI 238 (247)
T ss_pred CCCHHHHHHHHHHHcCCccCCccCcE
Confidence 6789999999999987642 34555
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=173.09 Aligned_cols=216 Identities=15% Similarity=0.104 Sum_probs=152.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... +.+... ...++..+++|++|+++++++++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKL--ASLRQR--FGDHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHH--hCCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999999875432 112111 12457889999999998877665
Q ss_pred CCCEEEEcccCccc------CCCC----CcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 GCDGVFHTASPVIF------LSDN----PQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~----~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
.+|++||+||.... ...+ .+++.+++|+.++..+++++.+.+ ..+++|++||..++.+....
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~------ 153 (263)
T PRK06200 80 KLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGG------ 153 (263)
T ss_pred CCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCC------
Confidence 57999999996421 1111 155678999999999999987642 23589999998655433221
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCC--------CccHHHHHHHHc
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPIL--------NFGAEVILNLIN 216 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~--------~~~~~~~~~~~~ 216 (322)
..|+.||.+.+.+++.++.++ +++++.+.||.+..+...... ............
T Consensus 154 ----------------~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (263)
T PRK06200 154 ----------------PLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAA 217 (263)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhc
Confidence 349999999999999999875 699999999999887532110 000111111111
Q ss_pred CCCCCCCCCcceeHHHHHHHHHHhhcCC---CCCccEE
Q 020747 217 GDQSFAFPYIFVEIRDVVYAHIRALEVP---KASGRYL 251 (322)
Q Consensus 217 g~~~~~~~~~~i~~~D~a~~~~~~~~~~---~~~g~~~ 251 (322)
.. +...+..++|+++++++++... ...|..+
T Consensus 218 ~~----p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i 251 (263)
T PRK06200 218 IT----PLQFAPQPEDHTGPYVLLASRRNSRALTGVVI 251 (263)
T ss_pred CC----CCCCCCCHHHHhhhhhheecccccCcccceEE
Confidence 11 3455778999999999998754 3456443
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=170.18 Aligned_cols=204 Identities=12% Similarity=0.143 Sum_probs=143.9
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|.+.....++|+||||+|+||++++++|+++| ++|++++|+.+....+...++... ..+++++++|++|+++++++++
T Consensus 1 ~~~~~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 1 MLDAVGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CccccCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHH
Confidence 34444567899999999999999999999995 999999998754222222222221 2368999999999988665544
Q ss_pred ------CCCEEEEcccCcccCC--CCC---cchhhhHHHHHHHHHHH----HHhhcCCccEEEEecchhhhccCCCCCCC
Q 020747 79 ------GCDGVFHTASPVIFLS--DNP---QADIVDPAVMGTLNVLR----SCAKVHSIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 ------~~d~vih~A~~~~~~~--~~~---~~~~~~~N~~~~~~l~~----~~~~~~~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
++|++||++|...... ..+ ..+.+++|+.++.++++ .+++. +.++||++||..+..+.+.
T Consensus 81 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~~g~~~~~~---- 155 (253)
T PRK07904 81 AAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSVAGERVRRS---- 155 (253)
T ss_pred HHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEechhhcCCCCC----
Confidence 6899999998753311 111 12468999999988544 44444 5679999999854332111
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
...|+.||++.+.+.+.++.+ +++++++++||.+..+......
T Consensus 156 ------------------~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~---------------- 201 (253)
T PRK07904 156 ------------------NFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAK---------------- 201 (253)
T ss_pred ------------------CcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCC----------------
Confidence 134999999999887777654 4999999999999886432110
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCCC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
.....+.++|+|+.++.+++++.
T Consensus 202 --~~~~~~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 202 --EAPLTVDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred --CCCCCCCHHHHHHHHHHHHHcCC
Confidence 00113579999999999998753
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=170.31 Aligned_cols=216 Identities=20% Similarity=0.215 Sum_probs=152.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||++++++|+++|++|++++|+..+..............++.++.+|++|++++.++++ .+|
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id 82 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD 82 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999999999885421112222222223568899999999998877665 479
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHH----hhcCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSC----AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|||+||.... ...+.+.+.+++|+.++.++++++ ++. +.++||++||..+..+...
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~~~~~~~~~------------- 148 (245)
T PRK12824 83 ILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSVNGLKGQFG------------- 148 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECChhhccCCCC-------------
Confidence 99999986432 223345678899999999986665 333 5679999999855433221
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.+|++.+.+++.++.+ .++++++++||.+.++...... ........... ....+..
T Consensus 149 ---------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~---~~~~~~~~~~~----~~~~~~~ 212 (245)
T PRK12824 149 ---------QTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG---PEVLQSIVNQI----PMKRLGT 212 (245)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC---HHHHHHHHhcC----CCCCCCC
Confidence 134999999999999988865 3899999999999987643211 11122222222 3344667
Q ss_pred HHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 230 IRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
++|+++++..++... ...| .+++.+
T Consensus 213 ~~~va~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK12824 213 PEEIAAAVAFLVSEAAGFITGETISING 240 (245)
T ss_pred HHHHHHHHHHHcCccccCccCcEEEECC
Confidence 999999999888653 2345 445543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=171.47 Aligned_cols=204 Identities=16% Similarity=0.178 Sum_probs=146.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+|+||||+|+||++++++|+++|++|++++|++.+. +.+... ...++..+.+|++|+++++++++ ++|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~--~~~~~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 76 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL--QELKDE--LGDNLYIAQLDVRNRAAIEEMLASLPAEWRNID 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHH--hccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999999999999976432 112111 12468889999999998877664 689
Q ss_pred EEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|||+||.... .+.+.+.+.+++|+.++..+++++.+. .+.+++|++||..+..+...
T Consensus 77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------- 143 (248)
T PRK10538 77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAG------------- 143 (248)
T ss_pred EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCC-------------
Confidence 99999986321 223445678999999988887776542 25578999999854432211
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC-CCccHHHHHHHHcCCCCCCCCCcce
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI-LNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
.+.|+.+|.+.+.+.+.++.+. ++++++++||.+.|+..... ............ ....++
T Consensus 144 ---------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 207 (248)
T PRK10538 144 ---------GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTY-------QNTVAL 207 (248)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHHHhhc-------cccCCC
Confidence 1459999999999999998764 79999999999987653211 111111111111 112356
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020747 229 EIRDVVYAHIRALEVPK 245 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~ 245 (322)
.++|+|+++++++..+.
T Consensus 208 ~~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 208 TPEDVSEAVWWVATLPA 224 (248)
T ss_pred CHHHHHHHHHHHhcCCC
Confidence 89999999999997653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=171.18 Aligned_cols=218 Identities=20% Similarity=0.189 Sum_probs=155.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||+++++.|+++|++|++++|+..+.. ....+....+.++..+++|++++++++++++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLE-EAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999998764321 1222222224568889999999888766555
Q ss_pred CCCEEEEcccCccc--------------CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCC
Q 020747 79 GCDGVFHTASPVIF--------------LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETP 140 (322)
Q Consensus 79 ~~d~vih~A~~~~~--------------~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~ 140 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. ....++|++||. +.++...
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~-~~~~~~~- 159 (253)
T PRK08217 82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSI-ARAGNMG- 159 (253)
T ss_pred CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccc-cccCCCC-
Confidence 47999999996432 112234567889999999887765542 123479999987 4443321
Q ss_pred CCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcC
Q 020747 141 MTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLING 217 (322)
Q Consensus 141 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g 217 (322)
...|+.+|++.+.+++.++.+ .+++++.++||.+.++..... .+........+
T Consensus 160 ---------------------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~ 215 (253)
T PRK08217 160 ---------------------QTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAM---KPEALERLEKM 215 (253)
T ss_pred ---------------------CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc---CHHHHHHHHhc
Confidence 145999999999999999876 489999999999998865321 12233333333
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCCCCCc-cEEEec
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVPKASG-RYLLAG 254 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~ 254 (322)
. ....+.+++|+|+++..++......| .+++.+
T Consensus 216 ~----~~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g 249 (253)
T PRK08217 216 I----PVGRLGEPEEIAHTVRFIIENDYVTGRVLEIDG 249 (253)
T ss_pred C----CcCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence 2 44557789999999999997765566 455544
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=178.82 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=151.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++|+||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+.+|++|+++++++++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~-~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQ-AVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999998764321 2222332334568889999999999887764
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... ...+.+.+.+++|+.++.++.+++.+. .+.++||++||..++.+.+.
T Consensus 84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~----------- 152 (330)
T PRK06139 84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPY----------- 152 (330)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCC-----------
Confidence 57999999986322 122345578999999999998887542 14468999999855543322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.||.+.+.+.+.++.+. +++++.+.||.+.+|........ .+.... ....
T Consensus 153 -----------~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~---------~~~~~~-~~~~ 211 (330)
T PRK06139 153 -----------AAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANY---------TGRRLT-PPPP 211 (330)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccc---------cccccc-CCCC
Confidence 1459999999999888888763 79999999999999864321110 000000 2234
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020747 227 FVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~ 245 (322)
+.+++|+|++++.++++++
T Consensus 212 ~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 212 VYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 6789999999999998764
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=173.28 Aligned_cols=202 Identities=21% Similarity=0.154 Sum_probs=147.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--------CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--------GC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--------~~ 80 (322)
|+++||||+|+||++++++|+++|++|++++|+.... +.+..... ..++.++++|++|.+++.++++ .+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGL--AALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH--HHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999999999999999999999876432 11111111 3468899999999998877654 46
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++++....
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~------------ 146 (260)
T PRK08267 79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGL------------ 146 (260)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCc------------
Confidence 999999997532 122345678999999999999988642 245789999998777654321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
..|+.||++.+.+.+.++.+. ++++++++||.+.++....... ........ .....+.
T Consensus 147 ----------~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~---~~~~~~~~------~~~~~~~ 207 (260)
T PRK08267 147 ----------AVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN---EVDAGSTK------RLGVRLT 207 (260)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc---hhhhhhHh------hccCCCC
Confidence 459999999999999998663 8999999999998765332100 00111111 1122356
Q ss_pred HHHHHHHHHHhhcCC
Q 020747 230 IRDVVYAHIRALEVP 244 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~ 244 (322)
++|++++++.+++.+
T Consensus 208 ~~~va~~~~~~~~~~ 222 (260)
T PRK08267 208 PEDVAEAVWAAVQHP 222 (260)
T ss_pred HHHHHHHHHHHHhCC
Confidence 899999999999754
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=172.14 Aligned_cols=219 Identities=20% Similarity=0.181 Sum_probs=152.7
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh------hhhhhccCCCCcEEEEEccCCCccchH
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT------EHLRELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
||. +++|+++||||+|+||++++++|+++|++|++++|+...... +...++.....++..+++|++++++++
T Consensus 1 ~~~--~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~ 78 (273)
T PRK08278 1 MMS--LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVA 78 (273)
T ss_pred CCC--CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHH
Confidence 454 566899999999999999999999999999999997643211 111122222456889999999999888
Q ss_pred HhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCC
Q 020747 75 SAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNET 139 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~ 139 (322)
++++ ++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ +..++|++||.....+..
T Consensus 79 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~- 157 (273)
T PRK08278 79 AAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKW- 157 (273)
T ss_pred HHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccccc-
Confidence 7765 57999999996432 1223456788899999999999997542 235899999863321110
Q ss_pred CCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCC-ccCCCCCCCCCccHHHHHHHH
Q 020747 140 PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGT-VIGPFFQPILNFGAEVILNLI 215 (322)
Q Consensus 140 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~-v~G~~~~~~~~~~~~~~~~~~ 215 (322)
.. ..+.|+.||++.+.+++.++.++ +++++.+.|+. +-.+... +..
T Consensus 158 -------------~~------~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~-----------~~~ 207 (273)
T PRK08278 158 -------------FA------PHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVR-----------NLL 207 (273)
T ss_pred -------------cC------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHH-----------hcc
Confidence 00 01459999999999999999875 89999999984 3333211 111
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEecC
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGS 255 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~ 255 (322)
.+.. ....+..++|++++++.++... ..+|.+++.++
T Consensus 208 ~~~~---~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~~~~ 246 (273)
T PRK08278 208 GGDE---AMRRSRTPEIMADAAYEILSRPAREFTGNFLIDEE 246 (273)
T ss_pred cccc---cccccCCHHHHHHHHHHHhcCccccceeEEEeccc
Confidence 0111 2234567999999999998764 34566665443
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=172.41 Aligned_cols=220 Identities=20% Similarity=0.161 Sum_probs=156.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+|+||||+|+||++++++|+++|++|++++|+.+... +....+.....++..+.+|++++++++++++
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLK-ELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999764321 1112222223468899999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--------ccEEEEecchhhhccCCCCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--------IKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--------~~~~i~~SS~~~~~~~~~~~ 141 (322)
.+|+|||+||.... .....+...+++|+.++.++++++.+.+ . .+++|++||..++.+...
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~-- 162 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQ-- 162 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCC--
Confidence 57999999996432 1223456789999999999998876421 1 258999999854432211
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
..+|+.+|++.+.+++.++.+ +++++++++||.++++....... ......+. ..
T Consensus 163 --------------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~--~~~~~~~~-~~ 219 (258)
T PRK06949 163 --------------------IGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE--TEQGQKLV-SM 219 (258)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC--hHHHHHHH-hc
Confidence 145999999999999998876 48999999999999986432211 11111111 11
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
. ....+..++|+++++.+++... ...|.++..
T Consensus 220 --~-~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~ 253 (258)
T PRK06949 220 --L-PRKRVGKPEDLDGLLLLLAADESQFINGAIISA 253 (258)
T ss_pred --C-CCCCCcCHHHHHHHHHHHhChhhcCCCCcEEEe
Confidence 0 2345667999999999998753 356666443
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=169.39 Aligned_cols=216 Identities=19% Similarity=0.103 Sum_probs=151.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+++||||+|+||+++++.|+++|++|++++|+..... .....+.....++..+++|++|+++++++++ .+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE-EAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 378999999999999999999999999999998764321 1112222223568899999999998877664 57
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CC-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HS-IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.+...+++|+.++.++++++.+. .+ .++||++||..+..+...
T Consensus 80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~------------ 147 (252)
T PRK07677 80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPG------------ 147 (252)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCC------------
Confidence 999999985321 223345778999999999999998543 12 368999999844322211
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.++ |++++.++||.+.++..............++.... ....+
T Consensus 148 ----------~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 213 (252)
T PRK07677 148 ----------VIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSV----PLGRL 213 (252)
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccC----CCCCC
Confidence 0349999999999999988773 89999999999986432111111122223333222 33456
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
..++|+++++..++... ...|..
T Consensus 214 ~~~~~va~~~~~l~~~~~~~~~g~~ 238 (252)
T PRK07677 214 GTPEEIAGLAYFLLSDEAAYINGTC 238 (252)
T ss_pred CCHHHHHHHHHHHcCccccccCCCE
Confidence 78999999999988653 345543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=170.81 Aligned_cols=225 Identities=19% Similarity=0.120 Sum_probs=156.7
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||...+++|+++||||+|+||++++++|+++|++|++++|+..+... ...++... ..++..+.+|++|+++++++++
T Consensus 1 m~~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 1 MMQIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLAS-AEARLREKFPGARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred CCccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHHHhhCCCceEEEEEecCCCHHHHHHHHH
Confidence 67667788999999999999999999999999999999997644321 11122111 2367889999999998876654
Q ss_pred -------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCC
Q 020747 79 -------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 -------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
.+|++||+||.... ...+.+.+.+++|+.++..+++++.+.+ +.++||++||..+..+.+.
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 155 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPH---- 155 (265)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCC----
Confidence 57999999996422 2233567788999999988888876532 3469999999855433221
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC-------ccHHHHHH
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN-------FGAEVILN 213 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~-------~~~~~~~~ 213 (322)
...|+.+|++.+.+++.++.+. |++++.++||.+..+....... ........
T Consensus 156 ------------------~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (265)
T PRK07062 156 ------------------MVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAA 217 (265)
T ss_pred ------------------chHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHH
Confidence 1459999999999999888764 8999999999998875321100 00111111
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
... .... +...+..++|+++++++++... ..+|..
T Consensus 218 ~~~-~~~~-p~~r~~~p~~va~~~~~L~s~~~~~~tG~~ 254 (265)
T PRK07062 218 LAR-KKGI-PLGRLGRPDEAARALFFLASPLSSYTTGSH 254 (265)
T ss_pred Hhh-cCCC-CcCCCCCHHHHHHHHHHHhCchhcccccce
Confidence 111 0001 3345678999999999998753 345644
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=170.40 Aligned_cols=224 Identities=14% Similarity=0.048 Sum_probs=155.1
Q ss_pred CCCCCCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|++..+++|+++||||++ .||.+++++|+++|++|++.+|+. .. .+.+.++.........+++|++|+++++++++
T Consensus 1 ~~~~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~-~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VL-EKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred CCCcccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HH-HHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 566667889999999997 899999999999999999887753 11 12223222111122457899999998887765
Q ss_pred -------CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCC
Q 020747 79 -------GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 -------~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~ 141 (322)
.+|++||+||... +...+.+.+.+++|+.++..+++++.+.+. .++||++||..+..+.+.
T Consensus 79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~-- 156 (260)
T PRK06603 79 DIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPN-- 156 (260)
T ss_pred HHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCCc--
Confidence 4799999998632 112345677999999999999998765432 258999999744322211
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
...|+.||++.+.+.+.++.+. |++++.+.||.+-++.... ..........+....
T Consensus 157 --------------------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~ 215 (260)
T PRK06603 157 --------------------YNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA-IGDFSTMLKSHAATA 215 (260)
T ss_pred --------------------ccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc-CCCcHHHHHHHHhcC
Confidence 1459999999999999999864 8999999999998764221 111111122222211
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+|+++++++... ..+|..+..
T Consensus 216 ----p~~r~~~pedva~~~~~L~s~~~~~itG~~i~v 248 (260)
T PRK06603 216 ----PLKRNTTQEDVGGAAVYLFSELSKGVTGEIHYV 248 (260)
T ss_pred ----CcCCCCCHHHHHHHHHHHhCcccccCcceEEEe
Confidence 3344678999999999999753 345654333
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=172.30 Aligned_cols=196 Identities=16% Similarity=0.130 Sum_probs=146.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC----CCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD----GCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----~~d~v 83 (322)
|+|+||||+|+||++++++|+++|++|++++|+.++.. ....++.. ...++.++++|++|+++++++++ .+|+|
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLE-RLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHH-HHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 68999999999999999999999999999999864332 12222111 13478999999999999887766 46999
Q ss_pred EEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 84 FHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 84 ih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
||+||.... ...+.+.+.+++|+.++.++++++.+. .+.+++|++||..+..+.+.
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------------- 144 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRAS---------------- 144 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCC----------------
Confidence 999986432 112233467899999999999988653 24578999999855443221
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHH
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D 232 (322)
...|+.+|.+.+.+.+.++.+ .|+++++++||.++++..... . . ....+..++|
T Consensus 145 ------~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~-~------------~----~~~~~~~~~~ 201 (243)
T PRK07102 145 ------NYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGL-K------------L----PGPLTAQPEE 201 (243)
T ss_pred ------CcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhcc-C------------C----CccccCCHHH
Confidence 034999999999999998765 389999999999998743211 0 0 1122457999
Q ss_pred HHHHHHHhhcCC
Q 020747 233 VVYAHIRALEVP 244 (322)
Q Consensus 233 ~a~~~~~~~~~~ 244 (322)
+++.++.+++++
T Consensus 202 ~a~~i~~~~~~~ 213 (243)
T PRK07102 202 VAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHhCC
Confidence 999999999875
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=170.82 Aligned_cols=220 Identities=14% Similarity=0.072 Sum_probs=154.5
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcC-hhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+ +.||++++++|+++|++|++..|+..... .+.+.++.....++..+++|++|+++++++++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 567899999986 89999999999999999988877543221 12333332222346788999999999887665
Q ss_pred ---CCCEEEEcccCcc------c---CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVI------F---LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~------~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||... . ...+.++..+++|+.++..+++++.+.+ ..++||++||..+..+.+.
T Consensus 84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~------ 157 (258)
T PRK07370 84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIPN------ 157 (258)
T ss_pred HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCcc------
Confidence 4799999999642 1 1234567899999999999999987643 2268999999754332211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||++.+.+.+.++.++ |++++.+.||.+-++..... .........+....
T Consensus 158 ----------------~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~---- 216 (258)
T PRK07370 158 ----------------YNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV-GGILDMIHHVEEKA---- 216 (258)
T ss_pred ----------------cchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc-ccchhhhhhhhhcC----
Confidence 1459999999999999999875 89999999999988743211 11111111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLL 252 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~ 252 (322)
+...+..++|+++++.+++... ...|..+.
T Consensus 217 p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~ 248 (258)
T PRK07370 217 PLRRTVTQTEVGNTAAFLLSDLASGITGQTIY 248 (258)
T ss_pred CcCcCCCHHHHHHHHHHHhChhhccccCcEEE
Confidence 3345678999999999999753 34564433
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=170.40 Aligned_cols=203 Identities=22% Similarity=0.238 Sum_probs=148.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. +++++|+||||+|+||++++++|+++|++|++++|++.... ....++... .+++.+++|++|.+++.++++
T Consensus 1 m~~--~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~-~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 1 MMS--LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE-EAAAELNNK-GNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCC--CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH-HHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHH
Confidence 554 45689999999999999999999999999999998753321 222222221 568899999999998877665
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.+++|++||..+..+...
T Consensus 77 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~------- 149 (237)
T PRK07326 77 VAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAG------- 149 (237)
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCC-------
Confidence 68999999986432 1223345779999999999999987532 4468999999854332211
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.+|++.+.+.+.++.+ .|++++++|||.+.++....... . .
T Consensus 150 ---------------~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~------~----------~ 198 (237)
T PRK07326 150 ---------------GAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS------E----------K 198 (237)
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc------h----------h
Confidence 145999999999999988755 49999999999998765322100 0 0
Q ss_pred CCcceeHHHHHHHHHHhhcCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
....+.++|++++++.++..+.
T Consensus 199 ~~~~~~~~d~a~~~~~~l~~~~ 220 (237)
T PRK07326 199 DAWKIQPEDIAQLVLDLLKMPP 220 (237)
T ss_pred hhccCCHHHHHHHHHHHHhCCc
Confidence 0113679999999999998764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=170.05 Aligned_cols=217 Identities=17% Similarity=0.174 Sum_probs=155.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.++.. +...++... +.++..+.+|++++++++.+++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALA-QARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998754321 122222111 3468889999999988766554
Q ss_pred --CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||... ....+.+.+.+++|+.++.++++++.+. .+.+++|++||..++.+...
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~--------- 156 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRS--------- 156 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCC---------
Confidence 5799999998632 1234456778999999999999988642 14578999999855443221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.+.|+.+|.+.+.+++.++.+. |++++.++||.+.++....... ............ ...
T Consensus 157 -------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~~~~~~~~----~~~ 218 (257)
T PRK09242 157 -------------GAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS-DPDYYEQVIERT----PMR 218 (257)
T ss_pred -------------CcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC-ChHHHHHHHhcC----CCC
Confidence 1459999999999999988764 8999999999999987543222 122233322222 333
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
.+..++|++.++..++... ...|..
T Consensus 219 ~~~~~~~va~~~~~l~~~~~~~~~g~~ 245 (257)
T PRK09242 219 RVGEPEEVAAAVAFLCMPAASYITGQC 245 (257)
T ss_pred CCcCHHHHHHHHHHHhCcccccccCCE
Confidence 4557899999999998653 234544
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=169.37 Aligned_cols=214 Identities=17% Similarity=0.134 Sum_probs=153.8
Q ss_pred EEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC---CCEEEEccc
Q 020747 12 CVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG---CDGVFHTAS 88 (322)
Q Consensus 12 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~d~vih~A~ 88 (322)
+||||+|+||++++++|+++|++|++++|+..... ....++. ...+++++.+|++|++++.++++. +|++||+||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag 78 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLA-AAARALG-GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAA 78 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHh-cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 58999999999999999999999999998753321 1112221 135688999999999999988874 799999998
Q ss_pred Cccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 89 PVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
.... ...+.+...+++|+.++.+++++.... +.++||++||..++.+.+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~g~iv~~ss~~~~~~~~~----------------------~~ 135 (230)
T PRK07041 79 DTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIA-PGGSLTFVSGFAAVRPSAS----------------------GV 135 (230)
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhc-CCeEEEEECchhhcCCCCc----------------------ch
Confidence 6432 123456788999999999999966554 5689999999855443221 15
Q ss_pred hHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhh
Q 020747 164 WYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~ 241 (322)
.|+.+|.+.+.+++.++.+. +++++.++||.+-++......... ...+....... ....+.+++|+|++++.++
T Consensus 136 ~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 136 LQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERL----PARRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcC----CCCCCcCHHHHHHHHHHHh
Confidence 69999999999999998875 789999999998776532111111 11222222211 2234567999999999999
Q ss_pred cCCCCCc-cEEEec
Q 020747 242 EVPKASG-RYLLAG 254 (322)
Q Consensus 242 ~~~~~~g-~~~~~~ 254 (322)
+++...| .|++.+
T Consensus 212 ~~~~~~G~~~~v~g 225 (230)
T PRK07041 212 ANGFTTGSTVLVDG 225 (230)
T ss_pred cCCCcCCcEEEeCC
Confidence 8765556 556554
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=167.87 Aligned_cols=207 Identities=15% Similarity=0.120 Sum_probs=148.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+++||||+|+||++++++|+++|++|++++|++.+.. +.+.. ..+.++.+|++|+++++++++ .+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 75 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI-DGLRQ-----AGAQCIQADFSTNAGIMAFIDELKQHTDGL 75 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH-HHHHH-----cCCEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence 379999999999999999999999999999998764321 12211 125788999999998876654 47
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--ccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--IKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
|++||+||.... ...+.+++.+++|+.++..+.+++.+.+ + .+++|++||.....+.+.
T Consensus 76 d~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~----------- 144 (236)
T PRK06483 76 RAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDK----------- 144 (236)
T ss_pred cEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCC-----------
Confidence 999999996422 1234567889999999998888876632 2 358999999743322211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.||.+.+.+++.++.++ ++++++++||.+..+... ............ ....+.
T Consensus 145 -----------~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~-----~~~~~~~~~~~~----~~~~~~ 204 (236)
T PRK06483 145 -----------HIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD-----DAAYRQKALAKS----LLKIEP 204 (236)
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC-----CHHHHHHHhccC----ccccCC
Confidence 1459999999999999999885 699999999998543211 111112222221 222345
Q ss_pred eHHHHHHHHHHhhcCCCCCccEE
Q 020747 229 EIRDVVYAHIRALEVPKASGRYL 251 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g~~~ 251 (322)
.++|+++++.+++......|..+
T Consensus 205 ~~~~va~~~~~l~~~~~~~G~~i 227 (236)
T PRK06483 205 GEEEIIDLVDYLLTSCYVTGRSL 227 (236)
T ss_pred CHHHHHHHHHHHhcCCCcCCcEE
Confidence 79999999999998666677443
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=171.23 Aligned_cols=222 Identities=14% Similarity=0.052 Sum_probs=156.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++ |++++|+..+.. .....+.....++.++.+|+++++++.++++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE-AQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH-HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999998 999988754321 1122222224568889999999998877665
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..+++|++||...+.+.+.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~--------- 153 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPF--------- 153 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCC---------
Confidence 57999999996432 1223345678999999999998886532 1357999999855433221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC---C-CccHHHHHHHHcCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI---L-NFGAEVILNLINGDQSF 221 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~---~-~~~~~~~~~~~~g~~~~ 221 (322)
.+.|+.+|.+.|.+++.++.++ +++++.++||.++++..... . .....++.......
T Consensus 154 -------------~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--- 217 (260)
T PRK06198 154 -------------LAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ--- 217 (260)
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC---
Confidence 1459999999999999998765 79999999999999863210 0 01111222211111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~ 254 (322)
....+++++|++++++.++.... ..| .+...+
T Consensus 218 -~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~ 252 (260)
T PRK06198 218 -PFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQ 252 (260)
T ss_pred -CccCCcCHHHHHHHHHHHcChhhCCccCceEeECC
Confidence 34557899999999999986542 345 334444
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-22 Score=170.66 Aligned_cols=203 Identities=13% Similarity=0.107 Sum_probs=147.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+|+||++++++|+++|++|++++|+..+.. +..........++.++.+|++|++++.++++ .
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE-ALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3579999999999999999999999999999999764321 1212222223568899999999998877665 4
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+...+++|+.++.++++.+.+. .+.+++|++||..++.+...
T Consensus 84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------ 151 (241)
T PRK07454 84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQ------------ 151 (241)
T ss_pred CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCC------------
Confidence 8999999996432 122345677899999999988887442 14578999999854432211
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+.+.++.+ .|++++++|||.+-++....... .... ....++
T Consensus 152 ----------~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~------~~~~-------~~~~~~ 208 (241)
T PRK07454 152 ----------WGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV------QADF-------DRSAML 208 (241)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc------cccc-------ccccCC
Confidence 145999999999999888755 39999999999998875321100 0000 112357
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020747 229 EIRDVVYAHIRALEVPK 245 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~ 245 (322)
.++|+|++++.++.++.
T Consensus 209 ~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 209 SPEQVAQTILHLAQLPP 225 (241)
T ss_pred CHHHHHHHHHHHHcCCc
Confidence 89999999999998763
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=171.03 Aligned_cols=212 Identities=18% Similarity=0.148 Sum_probs=150.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ..++..+++|++|+++++++++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ----------HENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc----------cCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999998764431 2357889999999998887665
Q ss_pred CCCEEEEcccCccc--------------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCC
Q 020747 79 GCDGVFHTASPVIF--------------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 ~~d~vih~A~~~~~--------------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~ 141 (322)
.+|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..+..+...
T Consensus 77 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 154 (266)
T PRK06171 77 RIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEG-- 154 (266)
T ss_pred CCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCC--
Confidence 47999999996422 1223456689999999999999987642 3358999999855543321
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCcc-CCCCCCCCC--------ccHH
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVI-GPFFQPILN--------FGAE 209 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~-G~~~~~~~~--------~~~~ 209 (322)
...|+.+|.+.+.+++.++.+. |+++++++||.+. .+....... ....
T Consensus 155 --------------------~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~ 214 (266)
T PRK06171 155 --------------------QSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVE 214 (266)
T ss_pred --------------------CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHH
Confidence 1459999999999999998774 8999999999985 322111000 0001
Q ss_pred HHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 210 VILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
............ +...+..++|+|+++.+++... ..+|..
T Consensus 215 ~~~~~~~~~~~~-p~~r~~~~~eva~~~~fl~s~~~~~itG~~ 256 (266)
T PRK06171 215 QLRAGYTKTSTI-PLGRSGKLSEVADLVCYLLSDRASYITGVT 256 (266)
T ss_pred HHHhhhcccccc-cCCCCCCHHHhhhheeeeeccccccceeeE
Confidence 111111110011 3345678999999999999753 245544
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=192.29 Aligned_cols=221 Identities=23% Similarity=0.208 Sum_probs=157.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++|+||||+|+||+++++.|+++|++|++++|+..... .....+... .++..+.+|++|+++++++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~-~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE-AAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH-HHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999999764321 111222211 468899999999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCc-cEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSI-KRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~-~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... .....+...+++|+.|+.++++++.+. .+. ++||++||..++.+.+.
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~---------- 567 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPN---------- 567 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCC----------
Confidence 68999999996432 223445678999999999998887643 133 68999999866554322
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCcc-CCCCCCCCCcc---------HHHH-HHHH
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVI-GPFFQPILNFG---------AEVI-LNLI 215 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~-G~~~~~~~~~~---------~~~~-~~~~ 215 (322)
.+.|+.+|.+.+.+++.++.++ |+++++++|+.|| ++......... ..-+ ....
T Consensus 568 ------------~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~ 635 (681)
T PRK08324 568 ------------FGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYR 635 (681)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHH
Confidence 1569999999999999998775 6999999999998 55422110000 0000 0011
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhc--CCCCCc-cEEEec
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALE--VPKASG-RYLLAG 254 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~--~~~~~g-~~~~~~ 254 (322)
.+. ..+++++++|+|++++.++. ....+| .+++.+
T Consensus 636 ~~~----~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdg 673 (681)
T PRK08324 636 ARN----LLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDG 673 (681)
T ss_pred hcC----CcCCccCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence 111 56789999999999999984 334456 556654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=166.83 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=152.3
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCCEE
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCDGV 83 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~v 83 (322)
|+||||+|+||.+++++|+++|++|++++|+.++.......++.....++.++++|++|+++++++++ .+|++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 68999999999999999999999999988765432222333333334578999999999998877655 46999
Q ss_pred EEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 84 FHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 84 ih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
||+||.... ...+.+...+++|+.++.++++++. +..+.++||++||..++++.+..
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~-------------- 146 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQ-------------- 146 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCC--------------
Confidence 999986432 2234567789999999999998763 11144689999998677654321
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHH
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 231 (322)
..|+.+|.+.+.+.+.++.++ |++++.++||.+.++..... ........... +...+..++
T Consensus 147 --------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~----~~~~~~~~~ 210 (239)
T TIGR01831 147 --------VNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV----EHDLDEALKTV----PMNRMGQPA 210 (239)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh----hHHHHHHHhcC----CCCCCCCHH
Confidence 349999999999998888764 89999999999988764321 11122222211 334466899
Q ss_pred HHHHHHHHhhcCC--CCCccE
Q 020747 232 DVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 232 D~a~~~~~~~~~~--~~~g~~ 250 (322)
|+++++.+++..+ ...|..
T Consensus 211 ~va~~~~~l~~~~~~~~~g~~ 231 (239)
T TIGR01831 211 EVASLAGFLMSDGASYVTRQV 231 (239)
T ss_pred HHHHHHHHHcCchhcCccCCE
Confidence 9999999999753 344544
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=172.18 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=152.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... +.+... ...++..+++|++|+++++++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGL--QELEAA--HGDAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHhh--cCCceEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4679999999999999999999999999999999875322 112111 13468889999999988776664
Q ss_pred CCCEEEEcccCccc------CCC----CCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 GCDGVFHTASPVIF------LSD----NPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~----~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
.+|++||+||.... ... +.+.+.+++|+.++.++++++.+.+ ..+++|++||..++++...
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~------- 151 (262)
T TIGR03325 79 KIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGG------- 151 (262)
T ss_pred CCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCC-------
Confidence 57999999986421 111 1356789999999999999997742 2257999998755543321
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCC---Ccc---HHHHHHHHcCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPIL---NFG---AEVILNLINGD 218 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~---~~~---~~~~~~~~~g~ 218 (322)
...|+.+|.+.+.+++.++.++ +++++.+.||.+.++...+.. ... ...........
T Consensus 152 ---------------~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (262)
T TIGR03325 152 ---------------GPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSV 216 (262)
T ss_pred ---------------CchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhc
Confidence 1359999999999999999885 489999999999887533210 000 00011111111
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC---CCCccE
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP---KASGRY 250 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~---~~~g~~ 250 (322)
. +...+..++|+++++++++..+ ...|..
T Consensus 217 --~-p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~ 248 (262)
T TIGR03325 217 --L-PIGRMPDAEEYTGAYVFFATRGDTVPATGAV 248 (262)
T ss_pred --C-CCCCCCChHHhhhheeeeecCCCcccccceE
Confidence 1 3445678999999999998753 235644
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=173.87 Aligned_cols=208 Identities=19% Similarity=0.102 Sum_probs=146.4
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
...+++|+++||||+|+||++++++|+++|++|++.+++..........++...+.++..+++|++|+++++++++
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999988754322222223333334578899999999988877665
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----------CccEEEEecchhhhccCCCCC
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----------SIKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----------~~~~~i~~SS~~~~~~~~~~~ 141 (322)
.+|+|||+||.... .....+...+++|+.++.++++++.+.+ ..+++|++||..+..+....
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~- 165 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQ- 165 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCCC-
Confidence 58999999997543 2234566789999999999999875321 12589999998555433221
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
..|+.+|.+.+.+++.++.+ +|++++++.|+. ..+.......... ....
T Consensus 166 ---------------------~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~~~~~~~~~~----~~~~-- 217 (306)
T PRK07792 166 ---------------------ANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAMTADVFGDAP----DVEA-- 217 (306)
T ss_pred ---------------------chHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCchhhhhccccc----hhhh--
Confidence 34999999999999998876 589999999983 2221110000000 0000
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
....++.++|++.++.+++..
T Consensus 218 ----~~~~~~~pe~va~~v~~L~s~ 238 (306)
T PRK07792 218 ----GGIDPLSPEHVVPLVQFLASP 238 (306)
T ss_pred ----hccCCCCHHHHHHHHHHHcCc
Confidence 123345899999999998864
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-22 Score=170.71 Aligned_cols=209 Identities=18% Similarity=0.214 Sum_probs=144.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhh-ccCCCCcEEEEEccCCCccchHHhhC-CCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRE-LDGATERLHLFKANLLEEGSFDSAVD-GCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vih 85 (322)
+++|+||||+|+||++++++|+++|++|++++|+.... ..+.+ ......++..+.+|++|++++++++. ++|+|||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQV--TALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 37899999999999999999999999999999875332 11111 11123458889999999999988887 8999999
Q ss_pred cccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 86 TASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 86 ~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
+||.... ...+.+...+++|+.++.++.+.+.+. .+.++||++||..+..+.+.
T Consensus 80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~------------------ 141 (257)
T PRK09291 80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPF------------------ 141 (257)
T ss_pred CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCC------------------
Confidence 9996432 112234567889999998887765432 25579999999855433221
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-----CCCcce
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-----FPYIFV 228 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-----~~~~~i 228 (322)
...|+.+|.+.|.+++.++.+ .|++++++|||.+..+....... .+....... ..++ ...+++
T Consensus 142 ----~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
T PRK09291 142 ----TGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAE----TPKRWYDPARNFTDPEDLAFPLEQF 213 (257)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhh----hhhhhcchhhHHHhhhhhhccccCC
Confidence 145999999999999888765 59999999999876543211100 011111000 0000 233557
Q ss_pred eHHHHHHHHHHhhcCC
Q 020747 229 EIRDVVYAHIRALEVP 244 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~ 244 (322)
.++|+++.++.++..+
T Consensus 214 ~~~~~~~~~~~~l~~~ 229 (257)
T PRK09291 214 DPQEMIDAMVEVIPAD 229 (257)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 8999999999888764
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=165.66 Aligned_cols=212 Identities=14% Similarity=0.087 Sum_probs=148.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 82 (322)
+++|+|+||||+|+||++++++|+++|++|+++.|+..+.. +.+.. ...+..+.+|++|.+++.++++ .+|+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~-~~l~~----~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 78 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA-ERLAQ----ETGATAVQTDSADRDAVIDVVRKSGALDI 78 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHH-HHHHH----HhCCeEEecCCCCHHHHHHHHHHhCCCcE
Confidence 55789999999999999999999999999988766432211 11111 1125678899999888877665 4899
Q ss_pred EEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 83 VFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 83 vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
+||+||.... ...+.+++.+++|+.++.+++..+.+.+ ..+++|++||..+... +. .+
T Consensus 79 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-~~--------------~~- 142 (237)
T PRK12742 79 LVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM-PV--------------AG- 142 (237)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC-CC--------------CC-
Confidence 9999986432 1233567899999999999987776642 2468999999743210 00 01
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDV 233 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~ 233 (322)
...|+.+|++.+.+++.++.++ |+++++++||.+..+......+ ......... +...+..++|+
T Consensus 143 -----~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~----~~~~~~~~~----~~~~~~~p~~~ 209 (237)
T PRK12742 143 -----MAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP----MKDMMHSFM----AIKRHGRPEEV 209 (237)
T ss_pred -----CcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH----HHHHHHhcC----CCCCCCCHHHH
Confidence 1459999999999999988764 8999999999998876432111 111111111 23446789999
Q ss_pred HHHHHHhhcCC--CCCccEE
Q 020747 234 VYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 234 a~~~~~~~~~~--~~~g~~~ 251 (322)
++++.+++... ..+|..+
T Consensus 210 a~~~~~l~s~~~~~~~G~~~ 229 (237)
T PRK12742 210 AGMVAWLAGPEASFVTGAMH 229 (237)
T ss_pred HHHHHHHcCcccCcccCCEE
Confidence 99999998754 2356443
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=171.77 Aligned_cols=213 Identities=17% Similarity=0.128 Sum_probs=152.5
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++++++||||+|+||.+++++|+++|++|++++|+..... +...++. ...++..+++|++|+++++++++
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~-~~~~~l~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELA-ALAAELG-GDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhc-CCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 356799999999999999999999999999999998754321 1112222 13456677899999998877654
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ ..++||++||..++.+.+.
T Consensus 84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 152 (296)
T PRK05872 84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPG----------- 152 (296)
T ss_pred CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCC-----------
Confidence 57999999997432 2233456789999999999999987532 2368999999866543322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.+ .|+++++++||.+.++........ ......+....+ . ....+
T Consensus 153 -----------~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~~~~~-~-p~~~~ 218 (296)
T PRK05872 153 -----------MAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-LPAFRELRARLP-W-PLRRT 218 (296)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-chhHHHHHhhCC-C-cccCC
Confidence 145999999999999998865 489999999999988754322111 011122211110 0 33456
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020747 228 VEIRDVVYAHIRALEVP 244 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~ 244 (322)
+.++|++++++.++.+.
T Consensus 219 ~~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 219 TSVEKCAAAFVDGIERR 235 (296)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 78999999999999864
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=167.30 Aligned_cols=208 Identities=17% Similarity=0.134 Sum_probs=144.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhC-------CC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+++||||+|+||+++++.|+++|++|++++|+..+...+....+... ...+..+++|++|+++++++++ .+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 38999999999999999999999999999987322211122222111 1234568899999998876664 57
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHH----HHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVM----GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~----~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.+.+.+++|+. ++..+++++++. +.++||++||..++.+.+..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~ss~~~~~~~~~~----------- 148 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS-QPASIVNISSVAAFKAEPDY----------- 148 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEecChhhccCCCCC-----------
Confidence 999999996532 122234567889998 556666666655 56799999998665443321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHcCCCCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNF--GAEVILNLINGDQSFAFP 224 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.+|.+.+.+++.++.+. +++++.++||.+.++........ .......+.++. +.
T Consensus 149 -----------~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----~~ 213 (251)
T PRK07069 149 -----------TAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV----PL 213 (251)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC----CC
Confidence 349999999999999988763 48999999999999864321110 111122222222 33
Q ss_pred CcceeHHHHHHHHHHhhcCC
Q 020747 225 YIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~ 244 (322)
..+.+++|++++++.++..+
T Consensus 214 ~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 214 GRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCCcCHHHHHHHHHHHcCcc
Confidence 45678999999999987653
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=170.12 Aligned_cols=219 Identities=21% Similarity=0.192 Sum_probs=153.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||.+++++|+++|++|+++.|+..... +...++...+.++..+.+|++|++++.++++ .+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAK-ETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 57999999999999999999999999999988743221 2222333334568899999999998877654 479
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|||+||.... .....+...+++|+.++..+++++.+. ...+++|++||..+.++.+..
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------ 147 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPIL------------ 147 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCC------------
Confidence 99999986432 122344578999999999888776542 123689999998666554321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--------cHHHHHHHHcCCCCC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--------GAEVILNLINGDQSF 221 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~~~~g~~~~ 221 (322)
+.|+.+|.+.+.+++.++.++ ++++++++||.+.++........ ............
T Consensus 148 ----------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 214 (254)
T TIGR02415 148 ----------SAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEI--- 214 (254)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhC---
Confidence 459999999999999888774 89999999999977642211000 000011111111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC--CCccEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK--ASGRYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~--~~g~~~~~~ 254 (322)
....+.+++|+++++.++++... ..|.++..+
T Consensus 215 -~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d 248 (254)
T TIGR02415 215 -ALGRPSEPEDVAGLVSFLASEDSDYITGQSILVD 248 (254)
T ss_pred -CCCCCCCHHHHHHHHHhhcccccCCccCcEEEec
Confidence 33457889999999999998753 346664443
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=166.35 Aligned_cols=217 Identities=15% Similarity=0.081 Sum_probs=151.5
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC---
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
+++|+++||||+ +.||.+++++|+++|++|++.+|+.... +.++++.. ...++..+++|++|+++++++++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLE--KEVRELADTLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccch--HHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 567999999997 8999999999999999999988754322 12222111 13467889999999998877665
Q ss_pred ----CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCC
Q 020747 79 ----GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ----~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
.+|++||+||.... ...+.+...+++|+.++..+++++.+.+. ..+||++||..+..+.+.
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~----- 157 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQN----- 157 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCC-----
Confidence 47999999986421 12223556789999999999988876532 358999999855432221
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.||++.+.+.+.++.++ |++++.|.||.+.++..... ..............
T Consensus 158 -----------------~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~--- 216 (257)
T PRK08594 158 -----------------YNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV-GGFNSILKEIEERA--- 216 (257)
T ss_pred -----------------CchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh-ccccHHHHHHhhcC---
Confidence 1459999999999999998764 89999999999988642211 00011111111111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
+...+..++|+++++++++... ...|..+
T Consensus 217 -p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~ 247 (257)
T PRK08594 217 -PLRRTTTQEEVGDTAAFLFSDLSRGVTGENI 247 (257)
T ss_pred -CccccCCHHHHHHHHHHHcCcccccccceEE
Confidence 2344678999999999998753 3456543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=170.35 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=146.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++|+||||+|+||++++++|+++|++|++++|+..... +...++.....++..+.+|++|+++++++++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLD-AVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999999753321 1112222223467889999999998887776
Q ss_pred CCCEEEEcccCcccCC-------CCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIFLS-------DNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~-------~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||...... ...+...+++|+.|+.++++++.+. .+.+++|++||.+++.+...
T Consensus 117 ~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p--------- 187 (293)
T PRK05866 117 GVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASP--------- 187 (293)
T ss_pred CCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCC---------
Confidence 6899999998643211 1223568899999999998877532 25679999999733221110
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
. .+.|+.+|++.+.+++.++.++ |+++++++||.+-++...+... . ...
T Consensus 188 ----~--------~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~~---------~-------~~~ 239 (293)
T PRK05866 188 ----L--------FSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKA---------Y-------DGL 239 (293)
T ss_pred ----C--------cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccccccc---------c-------cCC
Confidence 0 1459999999999999998774 8999999999887775322100 0 112
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 020747 226 IFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~ 244 (322)
..+.++++|+.++.+++++
T Consensus 240 ~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 240 PALTADEAAEWMVTAARTR 258 (293)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 2457999999999999874
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=168.37 Aligned_cols=228 Identities=17% Similarity=0.122 Sum_probs=145.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. +...++.. ...++.++++|++|.++++++++
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK-AAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999999999999999998754322 11122211 13468899999999998887665
Q ss_pred --CCCEEEEcccCccc---CCCCCcchhhhHHHHHHHHHHHH----HhhcCCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 --GCDGVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRS----CAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 --~~d~vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~----~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.|+..+.+. +++. +.++||++||.......... .....+
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~---~~~~~~ 168 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAAIH---FDDLQW 168 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCCCC---ccccCc
Confidence 47999999996432 23345577899999995555444 4443 45799999998443211110 111111
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEE--EcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVA--IHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~--~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
+.+.. +...|+.||++.+.+.+.++.++ ++++++ +.||.|.++..... +.....+..... .
T Consensus 169 ~~~~~------~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~-~~~~~~~~~~~~------~- 234 (306)
T PRK06197 169 ERRYN------RVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNL-PRALRPVATVLA------P- 234 (306)
T ss_pred ccCCC------cHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccC-cHHHHHHHHHHH------h-
Confidence 11111 12569999999999999998775 666655 47999988754321 111111111110 0
Q ss_pred CcceeHHHHHHHHHHhhcCC-CCCccEEE
Q 020747 225 YIFVEIRDVVYAHIRALEVP-KASGRYLL 252 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~-~~~g~~~~ 252 (322)
+-...++..+...+.++..+ ..+|.|+.
T Consensus 235 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 263 (306)
T PRK06197 235 LLAQSPEMGALPTLRAATDPAVRGGQYYG 263 (306)
T ss_pred hhcCCHHHHHHHHHHHhcCCCcCCCeEEc
Confidence 01124566777777766654 34566643
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=166.25 Aligned_cols=216 Identities=16% Similarity=0.052 Sum_probs=149.6
Q ss_pred CCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCc---------Ch-hhhhhccCCCCcEEEEEccCCCccch
Q 020747 6 GEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSP---------KT-EHLRELDGATERLHLFKANLLEEGSF 73 (322)
Q Consensus 6 ~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~ 73 (322)
+++++|+||||+| .||++++++|+++|++|++++|++.+. .. .....+.....++.++.+|+++++++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 4568999999996 799999999999999999999873211 00 11111222234689999999999987
Q ss_pred HHhhC-------CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCC
Q 020747 74 DSAVD-------GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNE 138 (322)
Q Consensus 74 ~~~~~-------~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~ 138 (322)
+++++ .+|+|||+||..... ....+.+.+++|+.++.++++++.+.+ +.+++|++||..++.+..
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~ 162 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMP 162 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCCC
Confidence 76654 479999999874321 122346678999999999999986532 346899999984433221
Q ss_pred CCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHH
Q 020747 139 TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215 (322)
Q Consensus 139 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~ 215 (322)
. ...|+.+|++.+.+++.++.++ +++++.++||.+..+..... ......
T Consensus 163 ~----------------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~------~~~~~~ 214 (256)
T PRK12748 163 D----------------------ELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEE------LKHHLV 214 (256)
T ss_pred C----------------------chHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChh------HHHhhh
Confidence 1 1459999999999999988764 89999999998877643211 111111
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEe
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLA 253 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~ 253 (322)
... ....+..++|+++++.+++... ...|.+ ++.
T Consensus 215 ~~~----~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d 251 (256)
T PRK12748 215 PKF----PQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSE 251 (256)
T ss_pred ccC----CCCCCcCHHHHHHHHHHHhCcccccccCCEEEec
Confidence 111 2223456899999999888753 344644 443
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=167.02 Aligned_cols=219 Identities=16% Similarity=0.088 Sum_probs=153.3
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+ +.||++++++|+++|++|++.+|+.... +.+.++.........+++|++|+++++++++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKAR--PYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhH--HHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence 467999999998 5999999999999999999998875321 1222222111234678999999998877654
Q ss_pred --CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 --GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 --~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
.+|++||+||.... ...+.+++.+++|+.++.++++++.+.+. .+++|++||..+..+.+.
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~------- 158 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVEN------- 158 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCcc-------
Confidence 47999999986421 12345678999999999999999876532 258999998743322111
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
.+.|+.||++.+.+.+.++.+. |++++.+.||.+-++..... .............. +
T Consensus 159 ---------------~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~----p 218 (258)
T PRK07533 159 ---------------YNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-DDFDALLEDAAERA----P 218 (258)
T ss_pred ---------------chhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-CCcHHHHHHHHhcC----C
Confidence 1459999999999999998874 89999999999988753211 11111222222221 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
...+..++|+++++++++... ...|..+..
T Consensus 219 ~~r~~~p~dva~~~~~L~s~~~~~itG~~i~v 250 (258)
T PRK07533 219 LRRLVDIDDVGAVAAFLASDAARRLTGNTLYI 250 (258)
T ss_pred cCCCCCHHHHHHHHHHHhChhhccccCcEEee
Confidence 345678999999999998753 355655433
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=168.64 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=152.0
Q ss_pred CCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++|||| ++.||++++++|+++|++|++.+|.... .+.+.++.........+++|++|+++++++++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL--EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHH--HHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999997 6799999999999999999988765321 12333332222234578999999999887765
Q ss_pred --CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCC
Q 020747 79 --GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 --~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||.... ...+.++..+++|+.++..+.+++.+.+ +.++||++||..+..+.+.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~----- 156 (261)
T PRK08690 82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPN----- 156 (261)
T ss_pred hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCC-----
Confidence 57999999997532 1112355678899999999988876532 2358999999855432221
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.+|.+.+.+.+.++.+ +|++++.+.||.|-.+..... .........+....
T Consensus 157 -----------------~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~-~~~~~~~~~~~~~~--- 215 (261)
T PRK08690 157 -----------------YNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGI-ADFGKLLGHVAAHN--- 215 (261)
T ss_pred -----------------cccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcC-CchHHHHHHHhhcC---
Confidence 145999999999999998865 489999999999988743211 11111122222211
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
+...+..++|+|+++.+++... ...|..+..+
T Consensus 216 -p~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vd 249 (261)
T PRK08690 216 -PLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVD 249 (261)
T ss_pred -CCCCCCCHHHHHHHHHHHhCcccCCcceeEEEEc
Confidence 3345778999999999999853 3456554433
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=169.62 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=151.4
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+ +.||++++++|+++|++|++.+|+... .+.+.++.. .... ..+++|++|+++++++++
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~--~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL--KKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH--HHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 457999999997 799999999999999999998887421 112222211 1223 578999999998877665
Q ss_pred ---CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||.... ...+.+++.+++|+.++..+.+++.+.+. -++||++||..+..+.+.
T Consensus 80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~------ 153 (274)
T PRK08415 80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVPH------ 153 (274)
T ss_pred HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCCc------
Confidence 47999999996421 22344677999999999999999887532 258999999754432211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||++.+.+.+.++.+. |++++.+.||.|.++..... ... .......... .
T Consensus 154 ----------------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~-~~~~~~~~~~--~- 212 (274)
T PRK08415 154 ----------------YNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGI-GDF-RMILKWNEIN--A- 212 (274)
T ss_pred ----------------chhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhcc-chh-hHHhhhhhhh--C-
Confidence 1459999999999999999874 89999999999988642211 100 0011111000 0
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+++++++++... ...|..+..
T Consensus 213 pl~r~~~pedva~~v~fL~s~~~~~itG~~i~v 245 (274)
T PRK08415 213 PLKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYV 245 (274)
T ss_pred chhccCCHHHHHHHHHHHhhhhhhcccccEEEE
Confidence 2334678999999999999753 456655444
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=171.41 Aligned_cols=216 Identities=19% Similarity=0.131 Sum_probs=151.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC--------CcChhhhhhccCCCCcEEEEEccCCCccchHHhh
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN--------SPKTEHLRELDGATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
+++|+++||||++.||++++++|+++|++|++++|+.+ +.......++.....++..+.+|++|++++++++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 56799999999999999999999999999999887651 1111222233333456788999999999887665
Q ss_pred C-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C------ccEEEEecchhhhcc
Q 020747 78 D-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S------IKRVVLTSSIGAMLL 136 (322)
Q Consensus 78 ~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~------~~~~i~~SS~~~~~~ 136 (322)
+ .+|++||+||.... ...+.+...+++|+.++..+++++.+.+ . .++||++||..+..+
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 163 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG 163 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence 4 57999999996432 2334567899999999999998876421 1 248999999866654
Q ss_pred CCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHH
Q 020747 137 NETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILN 213 (322)
Q Consensus 137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~ 213 (322)
.+.. ..|+.||.+.+.+.+.++.+ +|++++.|.|| +..+... .....
T Consensus 164 ~~~~----------------------~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~-------~~~~~ 213 (286)
T PRK07791 164 SVGQ----------------------GNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTE-------TVFAE 213 (286)
T ss_pred CCCc----------------------hhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcch-------hhHHH
Confidence 3321 45999999999999999887 48999999998 5433211 11111
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
.....+ . ....+..++|+++++++++... ...|.++..
T Consensus 214 ~~~~~~-~-~~~~~~~pedva~~~~~L~s~~~~~itG~~i~v 253 (286)
T PRK07791 214 MMAKPE-E-GEFDAMAPENVSPLVVWLGSAESRDVTGKVFEV 253 (286)
T ss_pred HHhcCc-c-cccCCCCHHHHHHHHHHHhCchhcCCCCcEEEE
Confidence 111110 0 1124568999999999998753 356765443
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-22 Score=168.97 Aligned_cols=214 Identities=18% Similarity=0.110 Sum_probs=146.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCC--------
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGC-------- 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-------- 80 (322)
|+++||||+|+||++++++|+++|++|++++|+..+.. ..+.+ ....+++.+++|++|+++++++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~-~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKEL-TKLAE--QYNSNLTFHSLDLQDVHELETNFNEILSSIQEDN 78 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHH-HHHHh--ccCCceEEEEecCCCHHHHHHHHHHHHHhcCccc
Confidence 78999999999999999999999999999998753211 11111 11356889999999999988777532
Q ss_pred ---CEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccc
Q 020747 81 ---DGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 81 ---d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.++||+||.... ...+.+...+++|+.++..+++.+.+.+ +.++||++||..+..+.+.
T Consensus 79 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 150 (251)
T PRK06924 79 VSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFG-------- 150 (251)
T ss_pred CCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCC--------
Confidence 278999986422 2233456778889999888877765531 3468999999744322111
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGDQ 219 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~ 219 (322)
...|+.+|++.+.+++.++.+ .+++++.++||.+-++...... ......+.......
T Consensus 151 --------------~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~- 215 (251)
T PRK06924 151 --------------WSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLK- 215 (251)
T ss_pred --------------cHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHh-
Confidence 156999999999999999876 3799999999998776422100 00000111111100
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcC-CCCCccEE
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEV-PKASGRYL 251 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~-~~~~g~~~ 251 (322)
....+..++|+|+.++.++.. ...+|.++
T Consensus 216 ---~~~~~~~~~dva~~~~~l~~~~~~~~G~~~ 245 (251)
T PRK06924 216 ---EEGKLLSPEYVAKALRNLLETEDFPNGEVI 245 (251)
T ss_pred ---hcCCcCCHHHHHHHHHHHHhcccCCCCCEe
Confidence 122467899999999999986 44556543
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=164.92 Aligned_cols=219 Identities=16% Similarity=0.092 Sum_probs=151.3
Q ss_pred CCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||++ .||+++++.|+++|++|++.+|+. +. .+...++....++...+.+|++|+++++++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KL-KGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hH-HHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 5678999999985 999999999999999999888762 11 12233332222346678999999999887765
Q ss_pred --CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 --GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 --~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||.... ...+.+...+++|+.++..+.+++.+.. ...+||++||..+..+.+.
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~------ 155 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPN------ 155 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCC------
Confidence 47999999996421 1122455678999999999998876531 2258999999744322111
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||.+.+.+++.++.+. |++++.|.||.+..+.... ...............
T Consensus 156 ----------------~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~~~~~~~~~~~~~---- 214 (262)
T PRK07984 156 ----------------YNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-IKDFRKMLAHCEAVT---- 214 (262)
T ss_pred ----------------cchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhc-CCchHHHHHHHHHcC----
Confidence 1459999999999999999874 8999999999998763211 111111111111111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+++++++++... ...|..+..
T Consensus 215 p~~r~~~pedva~~~~~L~s~~~~~itG~~i~v 247 (262)
T PRK07984 215 PIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHV 247 (262)
T ss_pred CCcCCCCHHHHHHHHHHHcCcccccccCcEEEE
Confidence 3345678999999999999753 345655433
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=166.91 Aligned_cols=210 Identities=16% Similarity=0.149 Sum_probs=147.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||++++++|+++|++|++++|+.... ..+.. .++..+.+|++++++++++++ ++|
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~-----~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDV-----EALAA--AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHHHH--CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999999875322 11111 236788999999988877664 579
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
+|||+||.... ...+.+...+++|+.|+.++++++.+.+ +.+++|++||..++.+.+.
T Consensus 75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------------- 139 (274)
T PRK05693 75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPF--------------- 139 (274)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCC---------------
Confidence 99999996422 1223456789999999999999986531 3468999999755543321
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCc----------cHHH---HHHHHcCC
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNF----------GAEV---ILNLINGD 218 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~----------~~~~---~~~~~~g~ 218 (322)
.+.|+.+|.+.+.+.+.++.+ +|+++++++||.|.++........ .... +......
T Consensus 140 -------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (274)
T PRK05693 140 -------AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARA- 211 (274)
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHh-
Confidence 145999999999999888876 599999999999988753321100 0000 0000000
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCCCCCccEEE
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLL 252 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~ 252 (322)
.......++|+|+.++.+++++.....+..
T Consensus 212 ----~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 241 (274)
T PRK05693 212 ----SQDNPTPAAEFARQLLAAVQQSPRPRLVRL 241 (274)
T ss_pred ----ccCCCCCHHHHHHHHHHHHhCCCCCceEEe
Confidence 111235789999999999987554344433
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=165.89 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=146.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-------
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++||||+|+||++++++|+++|++|++++|+..+.. +....+.. .+.++.++++|++|+++++++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLE-ELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999999998764322 11111111 13468899999999988876655
Q ss_pred CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||..... ..+.+.+.+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 149 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPG----------- 149 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCC-----------
Confidence 589999999964331 12233567899999999999987532 25679999999866554321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
+ ...|+.||++.+.+++.++.++ ++++++++||.+.++...... ....+
T Consensus 150 ----~------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~------------------~~~~~ 201 (248)
T PRK08251 150 ----V------KAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAK------------------STPFM 201 (248)
T ss_pred ----C------cccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhccc------------------cCCcc
Confidence 0 1459999999999999888764 799999999999876532210 11234
Q ss_pred eeHHHHHHHHHHhhcCC
Q 020747 228 VEIRDVVYAHIRALEVP 244 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~ 244 (322)
+..+|.+++++.+++.+
T Consensus 202 ~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 202 VDTETGVKALVKAIEKE 218 (248)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 67999999999999864
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-21 Score=162.89 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=146.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||++++++|+++|++|+++.|+..........+......++.++.+|++|+++++++++ .+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 5799999999999999999999999999988842221111222222223568899999999988876664 479
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|||+||.... ...+.+.+.++.|+.++..+++.+.+. .+.++||++||..+..+...
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~-------------- 146 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFG-------------- 146 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCC--------------
Confidence 99999986432 223345677899999998876665432 15679999999755443221
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
...|+.+|.+.+.+++.++++. +++++.++||.+.++...... ......+..+. ....+..+
T Consensus 147 --------~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~----~~~~~~~~ 211 (242)
T TIGR01829 147 --------QTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMR---EDVLNSIVAQI----PVGRLGRP 211 (242)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccc---hHHHHHHHhcC----CCCCCcCH
Confidence 1449999999999988887653 899999999999988643211 22233333222 33345678
Q ss_pred HHHHHHHHHhhcCC
Q 020747 231 RDVVYAHIRALEVP 244 (322)
Q Consensus 231 ~D~a~~~~~~~~~~ 244 (322)
+|+++++.+++.++
T Consensus 212 ~~~a~~~~~l~~~~ 225 (242)
T TIGR01829 212 EEIAAAVAFLASEE 225 (242)
T ss_pred HHHHHHHHHHcCch
Confidence 99999998887653
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=165.35 Aligned_cols=221 Identities=22% Similarity=0.251 Sum_probs=149.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--------CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--------GC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--------~~ 80 (322)
++|+||||+|+||+++++.|+++|++|++++|+.... +.+.. .+++.+.+|++|.++++.+++ .+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~--~~~~~-----~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 75 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDV--ARMNS-----LGFTGILLDLDDPESVERAADEVIALTDNRL 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHh--HHHHh-----CCCeEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999999999999876432 11111 236788999999887765543 46
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHH----HHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVL----RSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~----~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|.+||+||.... ...+.+...++.|+.|+.++. +.+++. +.+++|++||..++.+.+.
T Consensus 76 ~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~~~~~~~~~------------ 142 (256)
T PRK08017 76 YGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSVMGLISTPG------------ 142 (256)
T ss_pred eEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCcccccCCCC------------
Confidence 899999986432 122334578999999998874 444444 5679999999755433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHH---HcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC-C--CCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAK---ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF-A--FPY 225 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~--~~~ 225 (322)
.+.|+.+|.+.|.+.+.++. ..+++++++|||.+.++......... ...+.. + ..+
T Consensus 143 ----------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~--------~~~~~~~~~~~~~ 204 (256)
T PRK08017 143 ----------RGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQ--------SDKPVENPGIAAR 204 (256)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccchh--------hccchhhhHHHhh
Confidence 14599999999998877654 34899999999988765432110000 000111 1 335
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 271 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~ 271 (322)
.+++++|+++++..+++++.....+ . ...+..+...+.+.+|
T Consensus 205 ~~~~~~d~a~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~p 246 (256)
T PRK08017 205 FTLGPEAVVPKLRHALESPKPKLRY-P---VTLVTHAVMVLKRLLP 246 (256)
T ss_pred cCCCHHHHHHHHHHHHhCCCCCcee-e---cCcchHHHHHHHHHCC
Confidence 6799999999999999886543222 1 1112244445555554
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=174.62 Aligned_cols=260 Identities=23% Similarity=0.267 Sum_probs=178.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC---CeEEEEEeCCCCcCh-hhhhhc-------------cCCCCcEEEEEccCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG---YTVKATVRDPNSPKT-EHLREL-------------DGATERLHLFKANLL 68 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~-~~~~~~-------------~~~~~~~~~~~~Dl~ 68 (322)
.++|+|||||||||+|.-++++|+..- .+++.+.|....... +.+... .....++..+.||++
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 568999999999999999999999863 368888887655433 222211 112367888999998
Q ss_pred Ccc------chHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCC
Q 020747 69 EEG------SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 69 ~~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
+++ +++.+.+++|+|||+||.+.. +++.+....+|..||+++++.|++..+.+.++|+||+.+- ..... .
T Consensus 90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrF--de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n-~~~~~-i 165 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEVNIVIHSAATVRF--DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN-CNVGH-I 165 (467)
T ss_pred CcccCCChHHHHHHHhcCCEEEEeeeeecc--chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee-ccccc-c
Confidence 764 556677899999999997654 4555678899999999999999998788999999998554 21110 0
Q ss_pred CCccccCCCCC--------------------CcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCC
Q 020747 143 PDVVIDETWFS--------------------NPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202 (322)
Q Consensus 143 ~~~~~~E~~~~--------------------~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~ 202 (322)
.+.+..+...+ .+.......+.|..+|+.+|.++...+. +++++|+||+.|......|
T Consensus 166 ~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~EP 243 (467)
T KOG1221|consen 166 EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKEP 243 (467)
T ss_pred cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccCC
Confidence 12222211110 1111122236799999999999987654 8999999999999986555
Q ss_pred CCCcc------HHHHHHHHcCC-CCC---C-CCCcceeHHHHHHHHHHhhc--CCCC----CccEEEec---CCCCHHHH
Q 020747 203 ILNFG------AEVILNLINGD-QSF---A-FPYIFVEIRDVVYAHIRALE--VPKA----SGRYLLAG---SVAQHSDI 262 (322)
Q Consensus 203 ~~~~~------~~~~~~~~~g~-~~~---~-~~~~~i~~~D~a~~~~~~~~--~~~~----~g~~~~~~---~~~~~~e~ 262 (322)
..... ...+....+|. ..+ + ...++|.+|.||.+++.+.- .... ..+|+++. .++++.++
T Consensus 244 ~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~ 323 (467)
T KOG1221|consen 244 FPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDF 323 (467)
T ss_pred CCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHH
Confidence 32211 01111112222 111 1 78899999999999996651 1111 22787653 58999999
Q ss_pred HHHHHHhCC
Q 020747 263 LKFLREHYP 271 (322)
Q Consensus 263 ~~~i~~~~~ 271 (322)
.+...+...
T Consensus 324 ~e~~~~~~~ 332 (467)
T KOG1221|consen 324 IELALRYFE 332 (467)
T ss_pred HHHHHHhcc
Confidence 999999874
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=163.63 Aligned_cols=205 Identities=15% Similarity=0.093 Sum_probs=144.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCc--cchHHhh-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEE--GSFDSAV----- 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~--~~~~~~~----- 77 (322)
|++++++||||+|+||++++++|+++|++|++++|+..... ....++.. ...++..+.+|+++. +++++++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE-KVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHH-HHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999874321 11122211 123467788999763 3344332
Q ss_pred ---CCCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 78 ---DGCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 78 ---~~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
..+|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ +..++|++||..+..+.+.
T Consensus 83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~------ 156 (239)
T PRK08703 83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAY------ 156 (239)
T ss_pred HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCC------
Confidence 357999999996422 1122345678999999999999886632 3468999999744322211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.||++.+.+++.++.+. ++++++++||.|++|....... +.
T Consensus 157 ----------------~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~-----------~~--- 206 (239)
T PRK08703 157 ----------------WGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHP-----------GE--- 206 (239)
T ss_pred ----------------ccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCC-----------CC---
Confidence 1349999999999999998875 5999999999999986432111 11
Q ss_pred CCCCcceeHHHHHHHHHHhhcC--CCCCc
Q 020747 222 AFPYIFVEIRDVVYAHIRALEV--PKASG 248 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~--~~~~g 248 (322)
....+...+|++.++++++.. ....|
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g 234 (239)
T PRK08703 207 -AKSERKSYGDVLPAFVWWASAESKGRSG 234 (239)
T ss_pred -CccccCCHHHHHHHHHHHhCccccCcCC
Confidence 112345799999999999973 33445
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=166.81 Aligned_cols=235 Identities=17% Similarity=0.102 Sum_probs=152.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------CCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------GCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~d 81 (322)
+|+++|||| |+||++++++|. +|++|++++|+..... +...++...+.++..+++|++|+++++++++ .+|
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLE-AAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 478999997 799999999996 8999999998753321 2222222223468889999999998887765 489
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCC---ccc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN---PVL 157 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~---~~~ 157 (322)
+|||+||.... ..++...+++|+.++.++++++.+.+. .+++|++||..+..+..........+......+ ...
T Consensus 79 ~li~nAG~~~~--~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (275)
T PRK06940 79 GLVHTAGVSPS--QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPF 156 (275)
T ss_pred EEEECCCcCCc--hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccccc
Confidence 99999997532 345788999999999999999877521 246788888755432210000000111110000 000
Q ss_pred --cc---ccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc-cHHHHHHHHcCCCCCCCCCcce
Q 020747 158 --CK---ENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF-GAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 158 --~~---~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~i 228 (322)
.. .....|+.||++.+.+.+.++.++ |++++.++||.+.++........ .......+.... +...+.
T Consensus 157 ~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----p~~r~~ 232 (275)
T PRK06940 157 LQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS----PAGRPG 232 (275)
T ss_pred ccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC----CcccCC
Confidence 00 012459999999999999888764 89999999999988753221111 111112222111 334567
Q ss_pred eHHHHHHHHHHhhcCC--CCCccEE
Q 020747 229 EIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
.++|+|+++++++... ..+|..+
T Consensus 233 ~peeia~~~~fL~s~~~~~itG~~i 257 (275)
T PRK06940 233 TPDEIAALAEFLMGPRGSFITGSDF 257 (275)
T ss_pred CHHHHHHHHHHHcCcccCcccCceE
Confidence 8999999999998643 3456443
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=165.17 Aligned_cols=217 Identities=15% Similarity=0.046 Sum_probs=147.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|.||++++++|+++|++|++++|++.... +...++.. ..++..+++|++|+++++++++ .+|
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~-~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLE-KALKELKE-YGEVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHh-cCCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 47999999999999999999999999999998754321 12222221 2357889999999998887764 579
Q ss_pred EEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhh----cCCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 82 GVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAK----VHSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 82 ~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
+|||+||.... ....++...+++|+.++..+.+.+.+ ..+.++||++||..+..+.+.
T Consensus 79 ~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~----------- 147 (259)
T PRK08340 79 ALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPP----------- 147 (259)
T ss_pred EEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCC-----------
Confidence 99999996421 11223445677888887766655432 123468999999854332211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--------ccHHHH-HHHHcCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--------FGAEVI-LNLINGD 218 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~-~~~~~g~ 218 (322)
...|+.+|.+.+.+.+.++.++ |++++.+.||.+-++....... .....+ ..+....
T Consensus 148 -----------~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (259)
T PRK08340 148 -----------LVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERT 216 (259)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccC
Confidence 1459999999999999999875 7999999999998775321000 001101 1111111
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
+...+..++|+|+++.+++... ..+|..+..
T Consensus 217 ----p~~r~~~p~dva~~~~fL~s~~~~~itG~~i~v 249 (259)
T PRK08340 217 ----PLKRTGRWEELGSLIAFLLSENAEYMLGSTIVF 249 (259)
T ss_pred ----CccCCCCHHHHHHHHHHHcCcccccccCceEee
Confidence 3345778999999999999753 456655433
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=165.91 Aligned_cols=223 Identities=17% Similarity=0.041 Sum_probs=153.4
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
|++|+++||||+ +.||.+++++|+++|++|++..|+... .+.+.++.........+++|++|+++++++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~--~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDAL--KKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHH--HHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence 456899999997 899999999999999999888775321 12222222111235578999999998887665
Q ss_pred --CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 --GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 --~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
.+|++||+||.... ...+.+...+++|+.++..+++++.+.+ +.+++|++||..+..+.+.
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~------- 158 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPH------- 158 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCc-------
Confidence 47999999996421 2234567899999999999999987753 2368999998743321111
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||++.+.+.+.++.++ |++++++.||.+.++..... ... .......... . +
T Consensus 159 ---------------~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~-~~~~~~~~~~--~-p 218 (272)
T PRK08159 159 ---------------YNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI-GDF-RYILKWNEYN--A-P 218 (272)
T ss_pred ---------------chhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC-Ccc-hHHHHHHHhC--C-c
Confidence 1459999999999999999874 89999999999987542211 110 1111111111 1 2
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccEEEecCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRYLLAGSVA 257 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 257 (322)
...+..++|+|+++++++... ..+|.++..++..
T Consensus 219 ~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 219 LRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred ccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 334578999999999999753 3567554444333
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=166.31 Aligned_cols=204 Identities=17% Similarity=0.149 Sum_probs=148.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 79 (322)
+++++++||||+|+||++++++|+++|++|++++|+..... +...++ ....++.++++|++|+++++++++ .
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE-ALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 45689999999999999999999999999999998754322 122222 224578899999999998776654 5
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+ +.+++|++||..+..+....
T Consensus 81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~----------- 149 (263)
T PRK09072 81 INVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGY----------- 149 (263)
T ss_pred CCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCc-----------
Confidence 7999999996432 1222345678899999999999986531 34689999997555443321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.+|.+.+.+++.++.++ +++++++.||.+.++...... .. .... ....+.
T Consensus 150 -----------~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~-------~~-~~~~----~~~~~~ 206 (263)
T PRK09072 150 -----------ASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAV-------QA-LNRA----LGNAMD 206 (263)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhc-------cc-cccc----ccCCCC
Confidence 459999999999999998764 899999999988776422110 00 0000 112456
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020747 229 EIRDVVYAHIRALEVPK 245 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~ 245 (322)
.++|+|++++.+++++.
T Consensus 207 ~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 207 DPEDVAAAVLQAIEKER 223 (263)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 79999999999999753
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=183.13 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=157.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
.+|+++||||+|+||.+++++|+++|++|++++|+.... +.+.+.. ..++..+.+|++|+++++++++ .
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~--~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA--KKLAEAL--GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHh--CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999875332 1121111 2456778999999998887765 4
Q ss_pred CCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 CDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 ~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|++||+||.... ...+.+++.+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 410 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPP------------- 410 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCC-------------
Confidence 7999999996421 2233567889999999999999988753 2368999999866544322
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.+|++.+.+++.++.++ |+++++++||.|.++...............+.+.. ....+..
T Consensus 411 ---------~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 477 (520)
T PRK06484 411 ---------RNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRI----PLGRLGD 477 (520)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcC----CCCCCcC
Confidence 1459999999999999998875 89999999999998754321111111122222221 2334678
Q ss_pred HHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 230 IRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
++|+|+++++++... ...|.. .+.++
T Consensus 478 ~~dia~~~~~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 478 PEEVAEAIAFLASPAASYVNGATLTVDGG 506 (520)
T ss_pred HHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 999999999998753 345644 44444
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=164.31 Aligned_cols=220 Identities=14% Similarity=0.063 Sum_probs=153.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC---CCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD---GCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---~~d 81 (322)
+++|+++||||+|.||+++++.|+++|++|++++|+..+.. ....++.. ...++..+.+|++|+++++++++ .+|
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALE-ALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 56799999999999999999999999999999998764321 11222221 13468889999999998887765 589
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
++||+||.... ...+.+...+++|+.++..+++++.+.+ +.+++|++||..+..+...
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~-------------- 149 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDAD-------------- 149 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCC--------------
Confidence 99999986432 2233456789999999999999875432 3358999998744322111
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC-------ccHHHHHHHHcCCCCCCC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN-------FGAEVILNLINGDQSFAF 223 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~-------~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.+|.+.+.+++.++.+. |++++.++||.+.++....... .....+..+.... +
T Consensus 150 --------~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 217 (259)
T PRK06125 150 --------YICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGL----P 217 (259)
T ss_pred --------chHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccC----C
Confidence 1459999999999999988753 8999999999998874211000 0011111221111 2
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccEEE
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRYLL 252 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~ 252 (322)
...+..++|+|+++++++... ..+|..+.
T Consensus 218 ~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~ 248 (259)
T PRK06125 218 LGRPATPEEVADLVAFLASPRSGYTSGTVVT 248 (259)
T ss_pred cCCCcCHHHHHHHHHHHcCchhccccCceEE
Confidence 344678999999999998753 34565433
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=162.13 Aligned_cols=221 Identities=17% Similarity=0.090 Sum_probs=151.3
Q ss_pred CCCCCCCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||. .+++|+++|||| ++.||.+++++|+++|++|++.+|+......+.+.... ..++..+++|++|+++++++++
T Consensus 1 ~~~-~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 1 MMG-LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL--PEPAPVLELDVTNEEHLASLAD 77 (256)
T ss_pred Ccc-cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHH
Confidence 553 366799999999 89999999999999999999988764221111111111 2356789999999998877654
Q ss_pred -------CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCC
Q 020747 79 -------GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 -------~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~ 141 (322)
.+|++||+||.... ...+.+.+.+++|+.++..+++++.+.+. .+++|++|+. ...+.+
T Consensus 78 ~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~-~~~~~~--- 153 (256)
T PRK07889 78 RVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFD-ATVAWP--- 153 (256)
T ss_pred HHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeec-ccccCC---
Confidence 57999999996421 11234456799999999999999876532 2578888865 211111
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
. ...|+.||++.+.+.+.++.+. |++++.+.||.+..+..... +........+....
T Consensus 154 --------------~-----~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~ 213 (256)
T PRK07889 154 --------------A-----YDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAI-PGFELLEEGWDERA 213 (256)
T ss_pred --------------c-----cchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcc-cCcHHHHHHHHhcC
Confidence 1 1459999999999999998874 89999999999988753221 11111111111111
Q ss_pred CCCCCCC-cceeHHHHHHHHHHhhcCC--CCCccEEE
Q 020747 219 QSFAFPY-IFVEIRDVVYAHIRALEVP--KASGRYLL 252 (322)
Q Consensus 219 ~~~~~~~-~~i~~~D~a~~~~~~~~~~--~~~g~~~~ 252 (322)
+.. .+..++|+|+++++++... ...|.++.
T Consensus 214 ----p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~ 246 (256)
T PRK07889 214 ----PLGWDVKDPTPVARAVVALLSDWFPATTGEIVH 246 (256)
T ss_pred ----ccccccCCHHHHHHHHHHHhCcccccccceEEE
Confidence 222 4678999999999999764 34565533
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-21 Score=163.38 Aligned_cols=216 Identities=16% Similarity=0.081 Sum_probs=149.6
Q ss_pred CCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++|||| ++.||.+++++|+++|++|++.+|..... +.+.++.........+++|++|+++++++++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK--DRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHH--HHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHH
Confidence 56789999996 68999999999999999999887642211 2222221111223468899999999887765
Q ss_pred --CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 --GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 --~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||+||.... ...+.+...+++|+.++..+++++.+.+ +.+++|++||..+..+.+.
T Consensus 82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~------ 155 (260)
T PRK06997 82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPN------ 155 (260)
T ss_pred hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCC------
Confidence 47999999996421 1223566789999999999999988753 2368999999754322211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||++.+.+.+.++.++ |++++.+.||.+-.+.... ..........+....
T Consensus 156 ----------------~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~~~~~~~~~~~~~---- 214 (260)
T PRK06997 156 ----------------YNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IKDFGKILDFVESNA---- 214 (260)
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-ccchhhHHHHHHhcC----
Confidence 1459999999999999999874 8999999999998764221 110011111121111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
+...+..++|+++++.+++... ...|..
T Consensus 215 p~~r~~~pedva~~~~~l~s~~~~~itG~~ 244 (260)
T PRK06997 215 PLRRNVTIEEVGNVAAFLLSDLASGVTGEI 244 (260)
T ss_pred cccccCCHHHHHHHHHHHhCccccCcceeE
Confidence 2334678999999999999753 345644
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=162.30 Aligned_cols=217 Identities=20% Similarity=0.169 Sum_probs=154.4
Q ss_pred CCCcEEEEECCcc-hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-C-CCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASG-FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-A-TERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++++++||||+| .||+++++.|+++|++|++++|+..... .....+.. . ..++..+++|++++++++++++
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLG-ETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999997 7999999999999999999888754322 12222211 1 2368889999999988877665
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
.+|+|||+||.... ...+.+.+.+++|+.++..+++++.+.+ + .+++|++||..+..+...
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~------- 166 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHG------- 166 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCC-------
Confidence 57999999996422 2234466788999999999999876531 2 358999998744432211
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.+|++.+.+++.++.+ +|+++++++||.+.++...... .......+.... .
T Consensus 167 ---------------~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~--~~~~~~~~~~~~----~ 225 (262)
T PRK07831 167 ---------------QAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT--SAELLDELAARE----A 225 (262)
T ss_pred ---------------CcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc--CHHHHHHHHhcC----C
Confidence 144999999999999999977 4899999999999998643211 122222222222 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
...+..++|+++++++++... ...|..+
T Consensus 226 ~~r~~~p~~va~~~~~l~s~~~~~itG~~i 255 (262)
T PRK07831 226 FGRAAEPWEVANVIAFLASDYSSYLTGEVV 255 (262)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCcCCceE
Confidence 345677999999999999764 3456543
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=181.64 Aligned_cols=222 Identities=19% Similarity=0.162 Sum_probs=153.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+...... ....+.. ...++..+++|++|+++++++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~-~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEA-VAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999987543211 1111111 12357789999999999887776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... .....+...+++|+.+...+++.+.+.+ + .++||++||..++++.+..
T Consensus 491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~------- 563 (676)
T TIGR02632 491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNA------- 563 (676)
T ss_pred cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCC-------
Confidence 58999999996432 1223456788999999988876654321 2 3589999998666554321
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCcc-CCCCCCCCCc---------cHHHHHH-
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVI-GPFFQPILNF---------GAEVILN- 213 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~-G~~~~~~~~~---------~~~~~~~- 213 (322)
..|+.||++.+.+++.++.+. |++++.++|+.|+ |......... .......
T Consensus 564 ---------------~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (676)
T TIGR02632 564 ---------------SAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEH 628 (676)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHH
Confidence 569999999999999998874 8999999999987 3221110000 0000011
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
...+. ....+++++|+|+++.+++... ..+|.+ ++.+
T Consensus 629 ~~~r~----~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDG 668 (676)
T TIGR02632 629 YAKRT----LLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDG 668 (676)
T ss_pred HHhcC----CcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence 11111 4456789999999999988643 345644 5544
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-20 Score=158.37 Aligned_cols=217 Identities=17% Similarity=0.047 Sum_probs=149.8
Q ss_pred CCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCc-------Ch---hhhhhccCCCCcEEEEEccCCCccc
Q 020747 5 EGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSP-------KT---EHLRELDGATERLHLFKANLLEEGS 72 (322)
Q Consensus 5 ~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~---~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (322)
.+++|+++||||+| .||++++++|+++|++|++..|..... .. +...++...+.++..+++|++|+++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 35679999999995 899999999999999998876432110 00 1112222234568899999999998
Q ss_pred hHHhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccC
Q 020747 73 FDSAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 73 ~~~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~ 137 (322)
++++++ .+|+|||+||.... ...+.++..+++|+.++..+.+++.+.+ +.++||++||..+..+.
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~ 162 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPM 162 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCCC
Confidence 887765 36999999986432 2233456789999999999976654432 34599999998543322
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHH
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNL 214 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~ 214 (322)
+. ...|+.+|.+.+.+.++++.+ +|++++.++||.+-++.... .....+
T Consensus 163 ~~----------------------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~------~~~~~~ 214 (256)
T PRK12859 163 VG----------------------ELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE------EIKQGL 214 (256)
T ss_pred CC----------------------chHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH------HHHHHH
Confidence 11 145999999999999999876 48999999999987764221 111111
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
.... +...+..++|+++++.+++... ...|.++..
T Consensus 215 ~~~~----~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~ 251 (256)
T PRK12859 215 LPMF----PFGRIGEPKDAARLIKFLASEEAEWITGQIIHS 251 (256)
T ss_pred HhcC----CCCCCcCHHHHHHHHHHHhCccccCccCcEEEe
Confidence 1111 2334567999999999988653 345655444
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-21 Score=162.58 Aligned_cols=205 Identities=20% Similarity=0.114 Sum_probs=141.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----------
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---------- 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---------- 78 (322)
|+++||||+|+||++++++|+++|++|++++|+..+. .. .....++..+++|++|.+++++++.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~---~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS---LA---AAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG 75 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh---hh---hccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence 5899999999999999999999999999999875431 11 1113468889999999998877432
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|++||+||.... ...+.+...+++|+.++..+++.+.+.+ +.++||++||..+..+...
T Consensus 76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 146 (243)
T PRK07023 76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAG--------- 146 (243)
T ss_pred CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCC---------
Confidence 46899999986432 1223456788999999888877766532 3569999999854432221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH--cCccEEEEcCCCccCCCCCCC--CC-ccHHHHHHHHcCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE--NGIDLVAIHPGTVIGPFFQPI--LN-FGAEVILNLINGDQSFAF 223 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~rp~~v~G~~~~~~--~~-~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.+|.+.|.+++.++.+ .++++++++||.+-++..... .. ........+.... .
T Consensus 147 -------------~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~ 209 (243)
T PRK07023 147 -------------WSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTGMQATIRATDEERFPMRERFRELK----A 209 (243)
T ss_pred -------------chHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccHHHHHHHhcccccchHHHHHHHhh----h
Confidence 156999999999999998865 489999999999866532100 00 0000011111000 2
Q ss_pred CCcceeHHHHHHHHHHhhcCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
...++.++|+|+.++..+..+.
T Consensus 210 ~~~~~~~~~va~~~~~~l~~~~ 231 (243)
T PRK07023 210 SGALSTPEDAARRLIAYLLSDD 231 (243)
T ss_pred cCCCCCHHHHHHHHHHHHhccc
Confidence 2345679999997666665543
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=159.26 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=141.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccch----HHhh------
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSF----DSAV------ 77 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~----~~~~------ 77 (322)
+.++||||+|+||++++++|+++|++|+++.|+..+........+.. ...++..+.+|++|++.+ ++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~ 81 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA 81 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence 57999999999999999999999999998876543222222222221 124567789999998754 3333
Q ss_pred -CCCCEEEEcccCccc--C---CCC-----------CcchhhhHHHHHHHHHHHHHhhcCC---------ccEEEEecch
Q 020747 78 -DGCDGVFHTASPVIF--L---SDN-----------PQADIVDPAVMGTLNVLRSCAKVHS---------IKRVVLTSSI 131 (322)
Q Consensus 78 -~~~d~vih~A~~~~~--~---~~~-----------~~~~~~~~N~~~~~~l~~~~~~~~~---------~~~~i~~SS~ 131 (322)
.++|+|||+||.... . ... .+.+.+++|+.++..+++++.+.+. ..++|++||.
T Consensus 82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~ 161 (267)
T TIGR02685 82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA 161 (267)
T ss_pred cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence 258999999996422 1 111 2456799999999999998765421 1368888876
Q ss_pred hhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccH
Q 020747 132 GAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGA 208 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~ 208 (322)
.+..+.+. ..+|+.||.+.+.+++.++.+ +|++++.|+||.+..+...+ .
T Consensus 162 ~~~~~~~~----------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~--~--- 214 (267)
T TIGR02685 162 MTDQPLLG----------------------FTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP--F--- 214 (267)
T ss_pred hccCCCcc----------------------cchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc--h---
Confidence 33221111 145999999999999999887 49999999999987664221 1
Q ss_pred HHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 209 EVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 209 ~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
..........+ ....+..++|+++++++++... ...|..
T Consensus 215 ~~~~~~~~~~~---~~~~~~~~~~va~~~~~l~~~~~~~~~G~~ 255 (267)
T TIGR02685 215 EVQEDYRRKVP---LGQREASAEQIADVVIFLVSPKAKYITGTC 255 (267)
T ss_pred hHHHHHHHhCC---CCcCCCCHHHHHHHHHHHhCcccCCcccce
Confidence 11111111111 1123568999999999999764 345644
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=163.96 Aligned_cols=208 Identities=16% Similarity=0.139 Sum_probs=143.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhC-------CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
|+++||||+|+||.+++++|+++|++|++++|+.+... ....++.... ..+..+++|++|+++++++++ ++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLA-QTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999999999988653221 1222222111 234567899999988776555 47
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..+..+.+.
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~------------ 147 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPW------------ 147 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCC------------
Confidence 999999986422 2233456789999999999999976421 2368999999754433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC----ccHHHHHHHHcCCCCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN----FGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~----~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.+|.+.+.+.+.++.+ +++++++++||.+.++....... ............ ..
T Consensus 148 ----------~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 212 (272)
T PRK07832 148 ----------HAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR-----FR 212 (272)
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh-----cc
Confidence 134999999999888888755 48999999999999886432110 000001111110 12
Q ss_pred CcceeHHHHHHHHHHhhcCC
Q 020747 225 YIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~ 244 (322)
...+.++|+|++++.++.++
T Consensus 213 ~~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 213 GHAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred cCCCCHHHHHHHHHHHHhcC
Confidence 23578999999999999753
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=167.14 Aligned_cols=235 Identities=17% Similarity=0.102 Sum_probs=155.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+++|+++||||+|+||.+++++|+++|++|++++|+.++.. +...++.. ...++.++.+|++|+++++++++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~-~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGE-AAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999765332 22222211 12468899999999998887665
Q ss_pred ---CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 ---GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ---~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||.... ...+.++..+++|+.|...+.+.+.+.+ +..++|++||....++... -.++.+
T Consensus 90 ~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~----~~~~~~ 165 (313)
T PRK05854 90 EGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAIN----WDDLNW 165 (313)
T ss_pred hCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcC----cccccc
Confidence 47999999997532 2345667889999999999988877531 3468999999865543221 122333
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCC--Cc-cHHHHHHHHcCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPIL--NF-GAEVILNLINGDQSF 221 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~--~~-~~~~~~~~~~g~~~~ 221 (322)
+....+ ...|+.||.+.+.+.++++.+ .|++++.+.||.|.++...... .. ....+.++.... .
T Consensus 166 ~~~~~~------~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~--~ 237 (313)
T PRK05854 166 ERSYAG------MRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSL--S 237 (313)
T ss_pred cccCcc------hhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHHHHHHHHH--h
Confidence 322222 256999999999999999864 3799999999999876532110 00 011111111100 0
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC-CCccEEE
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK-ASGRYLL 252 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~-~~g~~~~ 252 (322)
....-+-.+++-+...+.++..+. .+|.|+.
T Consensus 238 ~~~~~~~~~~~ga~~~l~~a~~~~~~~g~~~~ 269 (313)
T PRK05854 238 ARGFLVGTVESAILPALYAATSPDAEGGAFYG 269 (313)
T ss_pred hcccccCCHHHHHHHhhheeeCCCCCCCcEEC
Confidence 000012367888888888776553 3455543
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=164.16 Aligned_cols=226 Identities=19% Similarity=0.073 Sum_probs=150.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc--------Ch-hhhhhccCCCCcEEEEEccCCCccchHH
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP--------KT-EHLRELDGATERLHLFKANLLEEGSFDS 75 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 75 (322)
.+++|+++||||++.||.+++++|++.|++|++++|+.... .. .....+...+.++..+++|++|++++++
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 46789999999999999999999999999999999975321 11 1112222223467889999999998887
Q ss_pred hhC-------CCCEEEEcc-cCc------cc---CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhc
Q 020747 76 AVD-------GCDGVFHTA-SPV------IF---LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAML 135 (322)
Q Consensus 76 ~~~-------~~d~vih~A-~~~------~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~ 135 (322)
+++ .+|++||+| |.. .. ...+.+.+.+++|+.++..+++++.+.+ +..+||++||..+.+
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 665 479999999 631 11 1123455678999999999998887643 236899999963432
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~ 212 (322)
.... .+ ....|+.||.+...+.+.++.++ |++++.|.||.+-.+............+.
T Consensus 165 ~~~~--------------~~-----~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~ 225 (305)
T PRK08303 165 NATH--------------YR-----LSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWR 225 (305)
T ss_pred cCcC--------------CC-----CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchh
Confidence 1110 00 01349999999999999998875 89999999999977642110000000011
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC---CCccEEE
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVPK---ASGRYLL 252 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~---~~g~~~~ 252 (322)
......+ ....+..++|+++++++++..+. .+|.++.
T Consensus 226 ~~~~~~p---~~~~~~~peevA~~v~fL~s~~~~~~itG~~l~ 265 (305)
T PRK08303 226 DALAKEP---HFAISETPRYVGRAVAALAADPDVARWNGQSLS 265 (305)
T ss_pred hhhcccc---ccccCCCHHHHHHHHHHHHcCcchhhcCCcEEE
Confidence 1111001 12234479999999999997652 3565544
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=160.56 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=142.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCC--CccchHHh------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLL--EEGSFDSA------ 76 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~--~~~~~~~~------ 76 (322)
+++|+|+||||+|+||.+++++|+++|++|++++|+..... ....++.. ...++.++.+|++ ++++++++
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLE-AVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999764321 12222221 1245677888886 44444433
Q ss_pred -hCCCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcc
Q 020747 77 -VDGCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 77 -~~~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
+..+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..+..+....
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~------ 162 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANW------ 162 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCC------
Confidence 3368999999986422 222345678999999999999887532 256799999998554433221
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
..|+.||++.+.+++.++.++ ++++++++||.+-++......+. . .
T Consensus 163 ----------------~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~-----------~----~ 211 (247)
T PRK08945 163 ----------------GAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFPG-----------E----D 211 (247)
T ss_pred ----------------cccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcCc-----------c----c
Confidence 349999999999999988776 79999999999877632211110 0 1
Q ss_pred CCcceeHHHHHHHHHHhhcCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~ 244 (322)
...+..++|+++.+++++...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 212 PQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred ccCCCCHHHHHHHHHHHhCcc
Confidence 123467899999999988654
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=154.15 Aligned_cols=180 Identities=19% Similarity=0.155 Sum_probs=137.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~vih 85 (322)
|+++||||+|+||++++++|.++ ++|++++|+.. .+++|++|+++++++++ ++|+|||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~------------------~~~~D~~~~~~~~~~~~~~~~id~lv~ 61 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG------------------DVQVDITDPASIRALFEKVGKVDAVVS 61 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC------------------ceEecCCChHHHHHHHHhcCCCCEEEE
Confidence 37999999999999999999999 99999988642 35789999999988777 6899999
Q ss_pred cccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 86 TASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 86 ~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
+||.... ...+.+.+.+++|+.++.++++++.+.+ +..+|+++||..+..+.+.
T Consensus 62 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~-------------------- 121 (199)
T PRK07578 62 AAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPG-------------------- 121 (199)
T ss_pred CCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCC--------------------
Confidence 9986322 2233566788999999999999987642 3357999998754433221
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH--cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKE--NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAH 237 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~ 237 (322)
...|+.+|.+.+.+++.++.+ .|++++.++||.+-.+... ..+.. ....++.++|+|+++
T Consensus 122 --~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~---------~~~~~-------~~~~~~~~~~~a~~~ 183 (199)
T PRK07578 122 --GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK---------YGPFF-------PGFEPVPAARVALAY 183 (199)
T ss_pred --chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh---------hhhcC-------CCCCCCCHHHHHHHH
Confidence 145999999999999999886 4899999999988554210 01101 223457899999999
Q ss_pred HHhhcCCC
Q 020747 238 IRALEVPK 245 (322)
Q Consensus 238 ~~~~~~~~ 245 (322)
+.+++...
T Consensus 184 ~~~~~~~~ 191 (199)
T PRK07578 184 VRSVEGAQ 191 (199)
T ss_pred HHHhccce
Confidence 99998643
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=181.31 Aligned_cols=213 Identities=17% Similarity=0.109 Sum_probs=150.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+.+++++||||+|+||++++++|+++|++|++++|+..... +....+...+.++.++.+|++|+++++++++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE-RTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999998753321 1112222223568899999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ + .++||++||.+++.+.+.
T Consensus 392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~---------- 461 (582)
T PRK05855 392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRS---------- 461 (582)
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCC----------
Confidence 37999999997432 2234556788999999999999865431 2 358999999855543221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC-Cc-cH---HHHHHHHcCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL-NF-GA---EVILNLINGDQSF 221 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~-~~-~~---~~~~~~~~g~~~~ 221 (322)
...|+.||++.+.+++.++.+. |+++++++||.|-++...... .. .. ........ ..
T Consensus 462 ------------~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~- 526 (582)
T PRK05855 462 ------------LPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRAD--KL- 526 (582)
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhh--hh-
Confidence 1459999999999999888764 899999999999886533211 00 00 00000000 00
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
.......++|+|++++.++.++.
T Consensus 527 -~~~~~~~p~~va~~~~~~~~~~~ 549 (582)
T PRK05855 527 -YQRRGYGPEKVAKAIVDAVKRNK 549 (582)
T ss_pred -ccccCCCHHHHHHHHHHHHHcCC
Confidence 11123468999999999998754
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=179.36 Aligned_cols=200 Identities=21% Similarity=0.174 Sum_probs=149.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+++|++|+++++++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALD-ELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999764321 1222222224568899999999999887776
Q ss_pred CCCEEEEcccCcccC----C---CCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIFL----S---DNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~~----~---~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||..... . .+.+...+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 518 (657)
T PRK07201 448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPR--------- 518 (657)
T ss_pred CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCC---------
Confidence 589999999964221 1 1245678999999999998887543 14579999999855433221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.+.|+.||.+.+.+++.++.++ |+++++++||.|.++...+... . ...
T Consensus 519 -------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~---------~-------~~~ 569 (657)
T PRK07201 519 -------------FSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKR---------Y-------NNV 569 (657)
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcccc---------c-------cCC
Confidence 1459999999999999988764 8999999999999876432110 0 112
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 020747 226 IFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~ 244 (322)
..+.++++|+.++..+...
T Consensus 570 ~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 570 PTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 2467999999999987653
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-20 Score=155.82 Aligned_cols=203 Identities=18% Similarity=0.163 Sum_probs=144.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhh-hhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHL-RELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++++|+||||+|+||+++++.|+++|++|++++|+.... +.+ ..... ..+++.+++|++++++++++++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKL--KRMKKTLSK-YGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999976432 112 11111 2357889999999998876654
Q ss_pred -CCCEEEEcccCcccC---CCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 79 -GCDGVFHTASPVIFL---SDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 79 -~~d~vih~A~~~~~~---~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
.+|.+||+++..... ..+.+...++.|+.++..+++.+.+.. ..+++|++||..+.++...
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~-------------- 145 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASP-------------- 145 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCC--------------
Confidence 469999999854321 112345678999999999999887742 2257999999744321110
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
+ ...|+.+|.+.+.+++.++.+. +++++++||+.++++..... .+..... ....++..
T Consensus 146 -~------~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~------~~~~~~~------~~~~~~~~ 206 (238)
T PRK05786 146 -D------QLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER------NWKKLRK------LGDDMAPP 206 (238)
T ss_pred -C------chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh------hhhhhcc------ccCCCCCH
Confidence 0 1459999999999999888764 99999999999999753210 0111000 11235678
Q ss_pred HHHHHHHHHhhcCC
Q 020747 231 RDVVYAHIRALEVP 244 (322)
Q Consensus 231 ~D~a~~~~~~~~~~ 244 (322)
+|++++++.++..+
T Consensus 207 ~~va~~~~~~~~~~ 220 (238)
T PRK05786 207 EDFAKVIIWLLTDE 220 (238)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999753
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=158.08 Aligned_cols=214 Identities=21% Similarity=0.211 Sum_probs=149.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+.+|.|+||||+..||.+++++|+++|.+++.+.|...+... +.+++..... ++..+++|++|.++++++++
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHHh
Confidence 457999999999999999999999999998888887766532 1222222222 69999999999999886653
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ........++++|+.|+..+.+++.+.+ +-++||.+||..+..+.+..
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~-------- 160 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR-------- 160 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc--------
Confidence 78999999996432 2233445699999999999999987653 33799999999776554431
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcC-----ccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG-----IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
+.|+.||.+.+.+.+.+.+|+. +.+ .+.||.|-.............. . .
T Consensus 161 --------------~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~~~~~~~~-------~----~ 214 (282)
T KOG1205|consen 161 --------------SIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKELLGEEGK-------S----Q 214 (282)
T ss_pred --------------cccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchhhcccccc-------c----c
Confidence 3499999999999999999862 222 5889988776433221110000 1 2
Q ss_pred CCcceeHHHHHH--HHHHhhcCCCCCc--cEEEec
Q 020747 224 PYIFVEIRDVVY--AHIRALEVPKASG--RYLLAG 254 (322)
Q Consensus 224 ~~~~i~~~D~a~--~~~~~~~~~~~~g--~~~~~~ 254 (322)
...+...+|.+. .+..++..+...+ .++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p 249 (282)
T KOG1205|consen 215 QGPFLRTEDVADPEAVAYAISTPPCRQVEDIIIAP 249 (282)
T ss_pred ccchhhhhhhhhHHHHHHHHhcCcccchhheeecc
Confidence 234445566644 7777776654444 344443
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=159.19 Aligned_cols=207 Identities=16% Similarity=0.110 Sum_probs=143.7
Q ss_pred EEEEECCcchhHHHHHHHHHH----CCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhCC----
Q 020747 10 VVCVTGASGFVASWLVKLLLQ----RGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVDG---- 79 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~---- 79 (322)
.++||||+|+||.+++++|++ .|++|++++|+..... +...++.. ...++.++.+|++|+++++++++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALR-QLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHH-HHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 7999999999764332 22222221 134688899999999988776642
Q ss_pred -------CCEEEEcccCccc----C----CCCCcchhhhHHHHHHHHHHHHHhhcC----C-ccEEEEecchhhhccCCC
Q 020747 80 -------CDGVFHTASPVIF----L----SDNPQADIVDPAVMGTLNVLRSCAKVH----S-IKRVVLTSSIGAMLLNET 139 (322)
Q Consensus 80 -------~d~vih~A~~~~~----~----~~~~~~~~~~~N~~~~~~l~~~~~~~~----~-~~~~i~~SS~~~~~~~~~ 139 (322)
.|+|||+||.... . ..+.+.+.+++|+.++..+.+++.+.+ + .++||++||..++.+.+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~ 160 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKG 160 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCC
Confidence 2589999996422 1 113456799999999999988876542 1 258999999855443221
Q ss_pred CCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--ccHHHHHHH
Q 020747 140 PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--FGAEVILNL 214 (322)
Q Consensus 140 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~ 214 (322)
...|+.||.+.+.+++.++.+. |++++.++||.|-++....... ........+
T Consensus 161 ----------------------~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 218 (256)
T TIGR01500 161 ----------------------WALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGL 218 (256)
T ss_pred ----------------------chHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHH
Confidence 1459999999999999998874 8999999999997764221000 000111111
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcC
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.... +...+..++|+|++++.++++
T Consensus 219 ~~~~----~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 219 QELK----AKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HHHH----hcCCCCCHHHHHHHHHHHHhc
Confidence 1100 223467899999999999963
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=152.51 Aligned_cols=190 Identities=13% Similarity=0.072 Sum_probs=140.5
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----CCCEEEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----GCDGVFH 85 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vih 85 (322)
+++||||+|+||+++++.|+++|++|++++|+..+.. ....+ .++..+++|++|+++++++++ .+|++||
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~-~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~ 75 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLE-VAAKE-----LDVDAIVCDNTDPASLEEARGLFPHHLDTIVN 75 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHh-----ccCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence 6999999999999999999999999999998753321 11111 135678999999999887775 5899999
Q ss_pred cccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 86 TASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 86 ~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
+||.... ...+.+.+.+++|+.++.++++++.+.+ ..++||++||.. ....
T Consensus 76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~---~~~~--------------- 137 (223)
T PRK05884 76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN---PPAG--------------- 137 (223)
T ss_pred CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC---CCCc---------------
Confidence 9984210 0134567899999999999999987743 236899999973 1110
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHH
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 231 (322)
..|+.+|++.+.+++.++.++ |++++.+.||.+..+... . .... + ...++
T Consensus 138 --------~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~-----------~-~~~~----p---~~~~~ 190 (223)
T PRK05884 138 --------SAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYD-----------G-LSRT----P---PPVAA 190 (223)
T ss_pred --------cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhh-----------h-ccCC----C---CCCHH
Confidence 349999999999999998864 899999999998765311 0 0001 1 12689
Q ss_pred HHHHHHHHhhcCC--CCCccE
Q 020747 232 DVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 232 D~a~~~~~~~~~~--~~~g~~ 250 (322)
|+++++.+++... ...|..
T Consensus 191 ~ia~~~~~l~s~~~~~v~G~~ 211 (223)
T PRK05884 191 EIARLALFLTTPAARHITGQT 211 (223)
T ss_pred HHHHHHHHHcCchhhccCCcE
Confidence 9999999998753 345644
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=160.13 Aligned_cols=238 Identities=16% Similarity=0.114 Sum_probs=149.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
+++++||||+++||.+++++|+++| ++|++++|+..... +...++.....++..+.+|++|+++++++++ +
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAE-QAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4799999999999999999999999 99999998764321 2222222223467889999999998876654 4
Q ss_pred CCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--ccEEEEecchhhhccCCCCCCCCcccc
Q 020747 80 CDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--IKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 80 ~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
+|++||+||.... ...+.+...+++|+.++..+++++.+.+ + .++||++||..+......... ..+.+
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~-~~~~~ 160 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNV-PPKAN 160 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcC-CCccc
Confidence 8999999996432 1223456789999999999988876532 1 369999999855422100000 00000
Q ss_pred CCC-------CCC-----cccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCcc-CCCCCCCCCccHHHH
Q 020747 149 ETW-------FSN-----PVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVI-GPFFQPILNFGAEVI 211 (322)
Q Consensus 149 E~~-------~~~-----~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~-G~~~~~~~~~~~~~~ 211 (322)
.++ +.. ..........|+.||++...+.++++++. |++++.++||.|. .+.... .......+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~-~~~~~~~~ 239 (314)
T TIGR01289 161 LGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFRE-HVPLFRTL 239 (314)
T ss_pred ccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccccc-ccHHHHHH
Confidence 000 000 00001122559999999998888887653 7999999999996 333221 11111111
Q ss_pred HHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCccEEE
Q 020747 212 LNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASGRYLL 252 (322)
Q Consensus 212 ~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g~~~~ 252 (322)
....... ....+..+++.++.++.++.... .+|.|+.
T Consensus 240 ~~~~~~~----~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~ 278 (314)
T TIGR01289 240 FPPFQKY----ITKGYVSEEEAGERLAQVVSDPKLKKSGVYWS 278 (314)
T ss_pred HHHHHHH----HhccccchhhhhhhhHHhhcCcccCCCceeee
Confidence 1100000 11124679999999998876532 3466653
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=152.56 Aligned_cols=187 Identities=14% Similarity=0.084 Sum_probs=131.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++++++||||+|+||++++++|+++|++|++++|+..... . ... ......+.+|++|.+++++.+.++|++||
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~-~---~~~--~~~~~~~~~D~~~~~~~~~~~~~iDilVn 85 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS-E---SND--ESPNEWIKWECGKEESLDKQLASLDVLIL 85 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh-h---hhc--cCCCeEEEeeCCCHHHHHHhcCCCCEEEE
Confidence 35689999999999999999999999999999998752211 1 111 11125678999999999988889999999
Q ss_pred cccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcC------CccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 86 TASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVH------SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 86 ~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
+||.... ...+.+.+.+++|+.++.++++++.+.+ +...++..||.+...+. .
T Consensus 86 nAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~~-~------------------ 146 (245)
T PRK12367 86 NHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQPA-L------------------ 146 (245)
T ss_pred CCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCCC-C------------------
Confidence 9996432 2344567899999999999999987642 12234444554222111 0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH-------HcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAK-------ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~-------~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
...|+.||++.+.+. .+++ ..++.+..+.||.+.++.. + ...+.+
T Consensus 147 ----~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~----------------------~-~~~~~~ 198 (245)
T PRK12367 147 ----SPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSELN----------------------P-IGIMSA 198 (245)
T ss_pred ----CchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccccC----------------------c-cCCCCH
Confidence 034999999986543 3333 2488888899887644321 0 013568
Q ss_pred HHHHHHHHHhhcCCC
Q 020747 231 RDVVYAHIRALEVPK 245 (322)
Q Consensus 231 ~D~a~~~~~~~~~~~ 245 (322)
+|+|+.++.++++++
T Consensus 199 ~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 199 DFVAKQILDQANLGL 213 (245)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998754
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=170.24 Aligned_cols=207 Identities=17% Similarity=0.117 Sum_probs=149.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+++||.+++++|+++|++|++++|+..... +...++ ..++..+++|++|+++++++++ .
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERAR-ERADSL---GPDHHALAMDVSDEAQIREGFEQLHREFGR 79 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 5689999999999999999999999999999998764321 111222 2457789999999998877665 4
Q ss_pred CCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHHHHHhhcC---Cc-cEEEEecchhhhccCCCCCCCCcccc
Q 020747 80 CDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SI-KRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 80 ~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~-~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
+|++||+||... ....+.+.+.+++|+.++..+++++.+.+ +. .+||++||..+..+.+.
T Consensus 80 iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~--------- 150 (520)
T PRK06484 80 IDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPK--------- 150 (520)
T ss_pred CCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCC---------
Confidence 799999998631 12234567899999999999999987652 22 38999999865543322
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.+|++.+.+++.++.++ +++++.++||.+.++.................... ...
T Consensus 151 -------------~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~----~~~ 213 (520)
T PRK06484 151 -------------RTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRI----PLG 213 (520)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcC----CCC
Confidence 1459999999999999998874 89999999999987753321110000001111111 223
Q ss_pred cceeHHHHHHHHHHhhcC
Q 020747 226 IFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~ 243 (322)
.+..++|+++++.+++..
T Consensus 214 ~~~~~~~va~~v~~l~~~ 231 (520)
T PRK06484 214 RLGRPEEIAEAVFFLASD 231 (520)
T ss_pred CCcCHHHHHHHHHHHhCc
Confidence 356899999999998875
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-19 Score=151.26 Aligned_cols=203 Identities=17% Similarity=0.149 Sum_probs=142.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhC-------CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
|+++||||++.||.+++++|. +|++|++++|+..+.. +...++...+ .++..+++|++|+++++++++ .+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQ-GLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHH-HHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999 5999999998764332 2222222222 347889999999998876654 47
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|++||+||.... .......+.+++|+.+...++..+.+.+ + .++||++||..+..+.+.
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~------------ 146 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRA------------ 146 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcC------------
Confidence 999999997532 1122234567889999887766653321 2 368999999855433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+.+.++.+. |++++.+.||.+.++......+. .. ..
T Consensus 147 ----------~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~~~----------------~~--~~ 198 (246)
T PRK05599 147 ----------NYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMKPA----------------PM--SV 198 (246)
T ss_pred ----------CcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCCCCC----------------CC--CC
Confidence 1349999999999999998874 89999999999987643211000 00 14
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEe
Q 020747 229 EIRDVVYAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g~~~~~ 253 (322)
.++|+|++++.++.++..++.+...
T Consensus 199 ~pe~~a~~~~~~~~~~~~~~~~~~~ 223 (246)
T PRK05599 199 YPRDVAAAVVSAITSSKRSTTLWIP 223 (246)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEeC
Confidence 6899999999999986543344443
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=158.95 Aligned_cols=197 Identities=13% Similarity=0.174 Sum_probs=139.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCC--ccchH---HhhCC-
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLE--EGSFD---SAVDG- 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~--~~~~~---~~~~~- 79 (322)
++.++||||||+||++++++|+++|++|++++|+++... +...++... ..++..+.+|+++ .+.++ +.+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLK-DVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999864432 111222111 2367788999985 22233 33333
Q ss_pred -CCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 80 -CDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 80 -~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
+|++||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..++.....
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~--------- 202 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSD--------- 202 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCC---------
Confidence 5699999996421 122335578999999999999997653 24578999999855431110
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
|. .+.|+.||++.+.+.+.++.+. |+++++++||.|-++..... .. . .
T Consensus 203 ------p~-----~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~------------~~-----~-~ 253 (320)
T PLN02780 203 ------PL-----YAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIR------------RS-----S-F 253 (320)
T ss_pred ------cc-----chHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccccc------------CC-----C-C
Confidence 00 1569999999999999999875 89999999999987653210 00 0 1
Q ss_pred cceeHHHHHHHHHHhhcC
Q 020747 226 IFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~ 243 (322)
....++++|+.++..+..
T Consensus 254 ~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 254 LVPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 124689999999999964
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=164.39 Aligned_cols=212 Identities=16% Similarity=0.086 Sum_probs=148.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||.++++.|.++|++|++++|+.... .+.++.. .-+...+.+|++|+++++++++
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~---~l~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 283 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGE---ALAAVAN-RVGGTALALDITAPDAPARIAEHLAERHG 283 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHH---HHHHHHH-HcCCeEEEEeCCCHHHHHHHHHHHHHhCC
Confidence 3568999999999999999999999999999998853221 1221111 0123578899999998877665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..++.+....
T Consensus 284 ~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~---------- 353 (450)
T PRK08261 284 GLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQ---------- 353 (450)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCC----------
Confidence 57999999996532 2334567789999999999999997731 22689999998666544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.+|...+.+++.++.+ .|++++.+.||.+-.+.... .+. .......... .....
T Consensus 354 ------------~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~~---~~~~~~~~~~---~l~~~ 414 (450)
T PRK08261 354 ------------TNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IPF---ATREAGRRMN---SLQQG 414 (450)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cch---hHHHHHhhcC---CcCCC
Confidence 45999999999998888765 48999999999986643221 111 1111111000 12223
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
..++|+++++.+++... ..+|..
T Consensus 415 ~~p~dva~~~~~l~s~~~~~itG~~ 439 (450)
T PRK08261 415 GLPVDVAETIAWLASPASGGVTGNV 439 (450)
T ss_pred CCHHHHHHHHHHHhChhhcCCCCCE
Confidence 45789999999998643 235644
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=147.45 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=156.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.+++.||||||++.+|++++.+++++|.++++.+.+..... +..++.... .++..+.+|+++++++.++.+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~-etv~~~~~~-g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNE-ETVKEIRKI-GEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchH-HHHHHHHhc-CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999998888887765443 455555443 378999999999998876554
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... ..++..++.+++|+.|.....++..+.| +-+++|.++|..+..+.+.-
T Consensus 114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl---------- 183 (300)
T KOG1201|consen 114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGL---------- 183 (300)
T ss_pred CceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccc----------
Confidence 57999999997543 3455567899999999999888876542 45799999999888766542
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc------CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN------GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.||.++..+.+++..|. |++.+.+.|+.+-...... ...++..
T Consensus 184 ------------~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~---------------~~~~~~l 236 (300)
T KOG1201|consen 184 ------------ADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG---------------ATPFPTL 236 (300)
T ss_pred ------------hhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC---------------CCCCccc
Confidence 459999999999999888663 7999999999876443221 1222256
Q ss_pred CcceeHHHHHHHHHHhhcCCC
Q 020747 225 YIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~ 245 (322)
.+.+.++.+|+.++.++..+.
T Consensus 237 ~P~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 237 APLLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred cCCCCHHHHHHHHHHHHHcCC
Confidence 777889999999999998765
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=159.87 Aligned_cols=189 Identities=15% Similarity=0.076 Sum_probs=131.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. . ........+..+.+|++|++++.+.+.++|++||
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~-~---~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLIn 251 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT-L---EINGEDLPVKTLHWQVGQEAALAELLEKVDILII 251 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-H---HHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence 46789999999999999999999999999999998753321 1 1111123467889999999999999999999999
Q ss_pred cccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcC---C----ccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 86 TASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVH---S----IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 86 ~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~----~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
+||.... ...+.+.+.+++|+.|+.++++++.+.+ + ...+|++|+. ...+ +.
T Consensus 252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa-~~~~-~~----------------- 312 (406)
T PRK07424 252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEA-EVNP-AF----------------- 312 (406)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccc-cccC-CC-----------------
Confidence 9986432 2233456889999999999999986532 1 1234555543 2211 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYA 236 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~ 236 (322)
...|+.||.+.+.+......+.++.+..+.||.+..+. . . ...+.++|+|+.
T Consensus 313 -----~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~~-----~-----------------~-~~~~spe~vA~~ 364 (406)
T PRK07424 313 -----SPLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSNL-----N-----------------P-IGVMSADWVAKQ 364 (406)
T ss_pred -----chHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCCC-----C-----------------c-CCCCCHHHHHHH
Confidence 03499999999998644333446556666665432211 0 0 123579999999
Q ss_pred HHHhhcCCC
Q 020747 237 HIRALEVPK 245 (322)
Q Consensus 237 ~~~~~~~~~ 245 (322)
++.++++++
T Consensus 365 il~~i~~~~ 373 (406)
T PRK07424 365 ILKLAKRDF 373 (406)
T ss_pred HHHHHHCCC
Confidence 999998754
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=147.28 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=141.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh---CCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV---DGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~d~v 83 (322)
|+|+||||+|+||++++++|+++| +.|....|+.... . ...++.++++|++++++++++. .++|+|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~Dls~~~~~~~~~~~~~~id~l 71 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------F--QHDNVQWHALDVTDEAEIKQLSEQFTQLDWL 71 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------c--ccCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 479999999999999999999986 5565555544221 1 1346888999999998876654 478999
Q ss_pred EEcccCcccC-----------CCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 84 FHTASPVIFL-----------SDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 84 ih~A~~~~~~-----------~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
||+||..... ..+.+...+++|+.++..+++++.+.+ +.++++++||..+.....
T Consensus 72 i~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~----------- 140 (235)
T PRK09009 72 INCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDN----------- 140 (235)
T ss_pred EECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccC-----------
Confidence 9999975321 112244688999999999999887643 235899998752211100
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
.. .+ ...|+.+|++.+.+.+.++.+ .+++++.+.||.+.++..... . ... ..
T Consensus 141 ~~--~~------~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~--------~---~~~----~~ 197 (235)
T PRK09009 141 RL--GG------WYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF--------Q---QNV----PK 197 (235)
T ss_pred CC--CC------cchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch--------h---hcc----cc
Confidence 00 01 135999999999999999976 378999999999988764321 0 011 22
Q ss_pred CcceeHHHHHHHHHHhhcCCC--CCccEE
Q 020747 225 YIFVEIRDVVYAHIRALEVPK--ASGRYL 251 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~--~~g~~~ 251 (322)
..++.++|+|+.++.++.... ..|.++
T Consensus 198 ~~~~~~~~~a~~~~~l~~~~~~~~~g~~~ 226 (235)
T PRK09009 198 GKLFTPEYVAQCLLGIIANATPAQSGSFL 226 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCChhhCCcEE
Confidence 335789999999999998753 456554
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=139.27 Aligned_cols=207 Identities=15% Similarity=0.139 Sum_probs=149.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
+.+.++||||+..||++++..|.++|++|.+.+++.... .+....+.. ..+-..+.||+++..+++..++ .
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A-~ata~~L~g-~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ 90 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAA-EATAGDLGG-YGDHSAFSCDVSKAHDVQNTLEEMEKSLGT 90 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhH-HHHHhhcCC-CCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence 348899999999999999999999999999999876533 233333332 2345678999999988876555 4
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc-----CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV-----HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~-----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++++|||||...+ +..++|+..+.+|+.|++.+.+++.+. .+.-+||++||+-+--|+..+
T Consensus 91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQ--------- 161 (256)
T KOG1200|consen 91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQ--------- 161 (256)
T ss_pred CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccc---------
Confidence 7999999997654 567789999999999999999988765 123489999998444333321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHH---HcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK---ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
+-|+.+|.-.--+.+..++ ..+++++.+.||.|-.|..... .+..+.++...- +...
T Consensus 162 -------------tnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~m---p~~v~~ki~~~i----Pmgr 221 (256)
T KOG1200|consen 162 -------------TNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAM---PPKVLDKILGMI----PMGR 221 (256)
T ss_pred -------------hhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhc---CHHHHHHHHccC----Cccc
Confidence 2266666544333333332 3499999999999999875432 233455555433 5566
Q ss_pred ceeHHHHHHHHHHhhcCC
Q 020747 227 FVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~ 244 (322)
+-..+|+|..++++....
T Consensus 222 ~G~~EevA~~V~fLAS~~ 239 (256)
T KOG1200|consen 222 LGEAEEVANLVLFLASDA 239 (256)
T ss_pred cCCHHHHHHHHHHHhccc
Confidence 778999999999998553
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=148.88 Aligned_cols=167 Identities=21% Similarity=0.234 Sum_probs=125.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d~v 83 (322)
|+++||||+|+||++++++|+++|++|++++|++.+. +.+... .++..+.+|++|+++++++++ ++|+|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~--~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v 75 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQD--TALQAL----PGVHIEKLDMNDPASLDQLLQRLQGQRFDLL 75 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcch--HHHHhc----cccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence 7899999999999999999999999999999986543 122221 346778899999988877666 48999
Q ss_pred EEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 84 FHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 84 ih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
||+||.... .....+...+++|+.++..+++++.+.. +..+++++||..+..+... .
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~--------------~ 141 (225)
T PRK08177 76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPD--------------G 141 (225)
T ss_pred EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCC--------------C
Confidence 999987432 1223456788899999999999887642 2357888888533221110 0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCC
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFF 200 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~ 200 (322)
.....|+.+|.+.+.+++.++.++ +++++.++||.+-++..
T Consensus 142 -----~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~ 185 (225)
T PRK08177 142 -----GEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMG 185 (225)
T ss_pred -----CCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCC
Confidence 001349999999999999998764 79999999999988753
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=147.11 Aligned_cols=189 Identities=17% Similarity=0.130 Sum_probs=140.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d~v 83 (322)
++++||||+|+||++++++|+++|++|++++|+.... +++.. ..++++.+|+++.++++++++ .+|+|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~-----~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v 74 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL-----AALQA--LGAEALALDVADPASVAGLAWKLDGEALDAA 74 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH-----HHHHh--ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence 6899999999999999999999999999999875432 12211 235688999999998887642 47999
Q ss_pred EEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 84 FHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 84 ih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
||+||.... ...+.++..+++|+.++.++++++.+.. ..+++|++||..++++.... .
T Consensus 75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------------~ 141 (222)
T PRK06953 75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG-------------T 141 (222)
T ss_pred EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC-------------C
Confidence 999997521 1233457789999999999999997632 23579999997555543210 0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHH
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDV 233 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~ 233 (322)
+ ...|+.+|.+.+.+++.++.++ +++++.++||.+..+..... + .+..++.
T Consensus 142 ~------~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~~-------------------~---~~~~~~~ 193 (222)
T PRK06953 142 T------GWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGAQ-------------------A---ALDPAQS 193 (222)
T ss_pred C------ccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCCC-------------------C---CCCHHHH
Confidence 0 0249999999999999988776 89999999999988752210 1 2357788
Q ss_pred HHHHHHhhcCCC
Q 020747 234 VYAHIRALEVPK 245 (322)
Q Consensus 234 a~~~~~~~~~~~ 245 (322)
++.++.++....
T Consensus 194 ~~~~~~~~~~~~ 205 (222)
T PRK06953 194 VAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHhcC
Confidence 888888766543
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=149.09 Aligned_cols=220 Identities=13% Similarity=0.030 Sum_probs=147.3
Q ss_pred CCCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhh-----h---ccC--CCCcEEEEEccC--C
Q 020747 5 EGEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLR-----E---LDG--ATERLHLFKANL--L 68 (322)
Q Consensus 5 ~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~-----~---~~~--~~~~~~~~~~Dl--~ 68 (322)
.+++|+++|||| +..||.++++.|+++|.+|++ .|+...... ..+. + ... .......+.+|+ +
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 367899999999 799999999999999999987 665433211 0000 0 000 001135678898 4
Q ss_pred Ccc------------------chHHhhC-------CCCEEEEcccCc----c---cCCCCCcchhhhHHHHHHHHHHHHH
Q 020747 69 EEG------------------SFDSAVD-------GCDGVFHTASPV----I---FLSDNPQADIVDPAVMGTLNVLRSC 116 (322)
Q Consensus 69 ~~~------------------~~~~~~~-------~~d~vih~A~~~----~---~~~~~~~~~~~~~N~~~~~~l~~~~ 116 (322)
+++ +++++++ .+|++||+||.. . +...+.+.+.+++|+.++..+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 444 4555544 479999999632 1 2334567889999999999999998
Q ss_pred hhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEc
Q 020747 117 AKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIH 191 (322)
Q Consensus 117 ~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~r 191 (322)
.+.+. -.++|++||..+..+.+.. ...|+.||.+.+.+.+.++.+. |++++.|.
T Consensus 165 ~p~m~~~G~II~isS~a~~~~~p~~---------------------~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~ 223 (303)
T PLN02730 165 GPIMNPGGASISLTYIASERIIPGY---------------------GGGMSSAKAALESDTRVLAFEAGRKYKIRVNTIS 223 (303)
T ss_pred HHHHhcCCEEEEEechhhcCCCCCC---------------------chhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEe
Confidence 87531 2689999998554332210 0359999999999999999863 79999999
Q ss_pred CCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 192 PGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 192 p~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
||.+-.+.... ............... +...+..++|++.++++++... ...|..+
T Consensus 224 PG~v~T~~~~~-~~~~~~~~~~~~~~~----pl~r~~~peevA~~~~fLaS~~a~~itG~~l 280 (303)
T PLN02730 224 AGPLGSRAAKA-IGFIDDMIEYSYANA----PLQKELTADEVGNAAAFLASPLASAITGATI 280 (303)
T ss_pred eCCccCchhhc-ccccHHHHHHHHhcC----CCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence 99998876432 111111111111111 2234568999999999999753 3456443
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=147.17 Aligned_cols=228 Identities=18% Similarity=0.148 Sum_probs=157.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+.+|+++||||+..||+++|++|++.|.+|++.+|+.+.... ..+........++..+.+|+++.++++++++
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998765322 1111112224568999999999887665544
Q ss_pred ----CCCEEEEcccCccc------CCCCCcchhhhHHHHH-HHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 ----GCDGVFHTASPVIF------LSDNPQADIVDPAVMG-TLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~-~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||.... ...+.++.++++|+.| +..+..++... .+...++++||..++.+....
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~---- 160 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGS---- 160 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCC----
Confidence 58999999996432 3456688999999995 67776666554 134578888888554332210
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQS 220 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~ 220 (322)
+ ..|+.+|.+.+++.+.++.+. |++++.+-||.|.++......... .....+...-...
T Consensus 161 ----------~-------~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 223 (270)
T KOG0725|consen 161 ----------G-------VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGA 223 (270)
T ss_pred ----------c-------ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccc
Confidence 0 249999999999999999874 999999999999998721111110 0111111000011
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
. +.-.+..++|++.++.+++.+. ...|..++.+
T Consensus 224 ~-p~gr~g~~~eva~~~~fla~~~asyitG~~i~vd 258 (270)
T KOG0725|consen 224 V-PLGRVGTPEEVAEAAAFLASDDASYITGQTIIVD 258 (270)
T ss_pred c-ccCCccCHHHHHHhHHhhcCcccccccCCEEEEe
Confidence 1 3455677999999999998774 3455444443
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=150.95 Aligned_cols=216 Identities=25% Similarity=0.290 Sum_probs=147.3
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcccCc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASPV 90 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~ 90 (322)
|+|+||||.+|+++++.|++.+++|.++.|+.+....+.+.. ..++.+.+|+.|++++.++++++|+||.+-+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~-----~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQA-----LGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHH-----TTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhc-----ccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 799999999999999999999999999999873322222222 235788999999999999999999999887543
Q ss_pred ccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHH
Q 020747 91 IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKT 170 (322)
Q Consensus 91 ~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~ 170 (322)
. ..-+....++++++++. |+++||+.|.. ..+.... ...|. ...-..|.
T Consensus 76 ~-----------~~~~~~~~~li~Aa~~a-gVk~~v~ss~~-~~~~~~~------------~~~p~------~~~~~~k~ 124 (233)
T PF05368_consen 76 H-----------PSELEQQKNLIDAAKAA-GVKHFVPSSFG-ADYDESS------------GSEPE------IPHFDQKA 124 (233)
T ss_dssp C-----------CCHHHHHHHHHHHHHHH-T-SEEEESEES-SGTTTTT------------TSTTH------HHHHHHHH
T ss_pred h-----------hhhhhhhhhHHHhhhcc-ccceEEEEEec-ccccccc------------ccccc------chhhhhhh
Confidence 2 12355678999999998 89999864443 3221110 01111 22445788
Q ss_pred HHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC----CCC-C--CCCcc-eeHHHHHHHHHHhhc
Q 020747 171 LAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD----QSF-A--FPYIF-VEIRDVVYAHIRALE 242 (322)
Q Consensus 171 ~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~----~~~-~--~~~~~-i~~~D~a~~~~~~~~ 242 (322)
..|+.++ +.+++++++|||..+........ ......+. .+. + ....+ ++.+|++++...++.
T Consensus 125 ~ie~~l~----~~~i~~t~i~~g~f~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~ 194 (233)
T PF05368_consen 125 EIEEYLR----ESGIPYTIIRPGFFMENLLPPFA------PVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILL 194 (233)
T ss_dssp HHHHHHH----HCTSEBEEEEE-EEHHHHHTTTH------HTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHH
T ss_pred hhhhhhh----hccccceeccccchhhhhhhhhc------ccccccccceEEEEccCCCccccccccHHHHHHHHHHHHc
Confidence 8888775 45999999999987654321100 00001111 111 1 33456 499999999999998
Q ss_pred CCCCC--c-cEEEecCCCCHHHHHHHHHHhCCC
Q 020747 243 VPKAS--G-RYLLAGSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 243 ~~~~~--g-~~~~~~~~~~~~e~~~~i~~~~~~ 272 (322)
++... + .+.+.++.+|..|+++.+.+.+|.
T Consensus 195 ~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 195 DPEKHNNGKTIFLAGETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp SGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTS
T ss_pred ChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCC
Confidence 87543 4 446677899999999999999874
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=140.63 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=125.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
++++||||+|+||.+++++|+++|+ .|+++.|++....... ...+.....++..+.+|++++++++++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 6777787654432111 12332334578889999999888877655
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. +.+++|++||..+.++....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~ii~~ss~~~~~~~~~~------------- 146 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL-PLDFFVLFSSVAGVLGNPGQ------------- 146 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC-CcceEEEEccHHHhcCCCCc-------------
Confidence 36999999986432 223445678999999999999999776 67899999998666554321
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIG 197 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G 197 (322)
..|+.+|.+.+.+++.+. ..+++++.+.||.+-|
T Consensus 147 ---------~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 180 (180)
T smart00822 147 ---------ANYAAANAFLDALAAHRR-ARGLPATSINWGAWAD 180 (180)
T ss_pred ---------hhhHHHHHHHHHHHHHHH-hcCCceEEEeeccccC
Confidence 459999999999996654 5699999999987643
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=153.04 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=144.2
Q ss_pred EEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCCEE
Q 020747 12 CVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCDGV 83 (322)
Q Consensus 12 lVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~v 83 (322)
+||||+++||.+++++|+++| ++|++.+|+..... ....++.....++.++++|++|.++++++++ .+|++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAE-RAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 589999999999999999999 99999988754321 2222222223467889999999998876654 47999
Q ss_pred EEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--ccEEEEecchhhhccCCCC-CCCCc------
Q 020747 84 FHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--IKRVVLTSSIGAMLLNETP-MTPDV------ 145 (322)
Q Consensus 84 ih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~i~~SS~~~~~~~~~~-~~~~~------ 145 (322)
||+||.... .+.+.++..+++|+.|+..+++++.+.+ + .++||++||..+..+.... ..+..
T Consensus 80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
T PLN00015 80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 159 (308)
T ss_pred EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence 999996422 1234566899999999999988766542 2 4699999998543211000 00000
Q ss_pred ----cccCCCC---CCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCCCCCCCccHHHHHHH
Q 020747 146 ----VIDETWF---SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFFQPILNFGAEVILNL 214 (322)
Q Consensus 146 ----~~~E~~~---~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~ 214 (322)
..++... .... .......|+.||++...+.+.++.++ |++++.++||.|...................
T Consensus 160 ~~~~~~~~~~~~~~~~~~-~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~~ 238 (308)
T PLN00015 160 GLAGGLNGLNSSAMIDGG-EFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPP 238 (308)
T ss_pred hhhcccCCccchhhcccc-CCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHHH
Confidence 0000000 0000 00112569999999777777777653 7999999999995432211111110000000
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
+... ....+..+++.|+.++.++... ..+|.|+
T Consensus 239 ~~~~----~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~ 273 (308)
T PLN00015 239 FQKY----ITKGYVSEEEAGKRLAQVVSDPSLTKSGVYW 273 (308)
T ss_pred HHHH----HhcccccHHHhhhhhhhhccccccCCCcccc
Confidence 0000 1122467999999999988653 2456664
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=147.48 Aligned_cols=229 Identities=14% Similarity=0.034 Sum_probs=145.1
Q ss_pred CCCCCCCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCC-------CCcChhhhhh-ccCCCC-----cEEEEEc
Q 020747 1 MMSGEGEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDP-------NSPKTEHLRE-LDGATE-----RLHLFKA 65 (322)
Q Consensus 1 mm~~~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~-------~~~~~~~~~~-~~~~~~-----~~~~~~~ 65 (322)
||...+++|+++||||+ ..||+++++.|+++|++|++.+|.+ +......... ...... ++..+..
T Consensus 1 ~~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (299)
T PRK06300 1 MLKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA 80 (299)
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence 77777889999999995 9999999999999999998876531 0000000000 000000 0111223
Q ss_pred cCCCcc------------------chHHhhC-------CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHH
Q 020747 66 NLLEEG------------------SFDSAVD-------GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVL 113 (322)
Q Consensus 66 Dl~~~~------------------~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~ 113 (322)
|+++++ +++++++ ++|++||+||... +...+.+++.+++|+.|+.+++
T Consensus 81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~ 160 (299)
T PRK06300 81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLL 160 (299)
T ss_pred hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHH
Confidence 443333 2343333 5899999997521 1234457788999999999999
Q ss_pred HHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEE
Q 020747 114 RSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLV 188 (322)
Q Consensus 114 ~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ 188 (322)
+++.+.+ .-+++|++||..+..+.+.. ...|+.||.+.+.+.+.++.+. |++++
T Consensus 161 ~a~~p~m~~~G~ii~iss~~~~~~~p~~---------------------~~~Y~asKaAl~~lt~~la~el~~~~gIrVn 219 (299)
T PRK06300 161 SHFGPIMNPGGSTISLTYLASMRAVPGY---------------------GGGMSSAKAALESDTKVLAWEAGRRWGIRVN 219 (299)
T ss_pred HHHHHHhhcCCeEEEEeehhhcCcCCCc---------------------cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9998754 22579999987554332210 0259999999999999999863 89999
Q ss_pred EEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEecC
Q 020747 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGS 255 (322)
Q Consensus 189 ~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~ 255 (322)
.|.||.+-.+..... .............. +...+..++|+++++.+++... ...|..+..++
T Consensus 220 ~V~PG~v~T~~~~~~-~~~~~~~~~~~~~~----p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdG 283 (299)
T PRK06300 220 TISAGPLASRAGKAI-GFIERMVDYYQDWA----PLPEPMEAEQVGAAAAFLVSPLASAITGETLYVDH 283 (299)
T ss_pred EEEeCCccChhhhcc-cccHHHHHHHHhcC----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 999999988753211 11111111111111 2234567999999999998753 35565443333
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=141.15 Aligned_cols=217 Identities=17% Similarity=0.153 Sum_probs=154.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|++++|||.|.||.+++++|+++|..+.+++-+...... ..+++... ..++.++++|+++..+++++++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p-~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINP-SVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCC-CceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999887777655443221 33333222 4678999999999999888877
Q ss_pred -CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC------ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 -GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS------IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 -~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
.+|++||.||... +.+++..+.+|+.|..+-...+.+.++ .+-+|++||..+.++-+..
T Consensus 82 g~iDIlINgAGi~~---dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~----------- 147 (261)
T KOG4169|consen 82 GTIDILINGAGILD---DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVF----------- 147 (261)
T ss_pred CceEEEEccccccc---chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccc-----------
Confidence 4699999999865 466789999999988877666655432 2359999998666544331
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCC-----CCCccHHHHHHHHcCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQP-----ILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~-----~~~~~~~~~~~~~~g~~~~ 221 (322)
..|+.||+..-.+.++++.. .|+++.+++||.+-..-... .+......+...+..
T Consensus 148 -----------pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~---- 212 (261)
T KOG4169|consen 148 -----------PVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALER---- 212 (261)
T ss_pred -----------hhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHH----
Confidence 34999999988888886543 49999999999876532110 011111222222221
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCCCCccEEEecC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGS 255 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~ 255 (322)
..-....++++.++.+++.+..+..|.++..
T Consensus 213 ---~~~q~~~~~a~~~v~aiE~~~NGaiw~v~~g 243 (261)
T KOG4169|consen 213 ---APKQSPACCAINIVNAIEYPKNGAIWKVDSG 243 (261)
T ss_pred ---cccCCHHHHHHHHHHHHhhccCCcEEEEecC
Confidence 2234689999999999999765557877643
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=137.51 Aligned_cols=209 Identities=17% Similarity=0.094 Sum_probs=156.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhCC---C
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVDG---C 80 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~---~ 80 (322)
+..++.|++||+.-.||+++|..|++.|.+|+++.|.+... ..+-. ....++.+++|+.+++.+.+++-. +
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L-----~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pi 78 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANL-----LSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPI 78 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHH-----HHHHhhCCcceeeeEecccHHHHHHHhhcccCch
Confidence 34578999999999999999999999999999999987432 22222 234489999999998888777663 5
Q ss_pred CEEEEcccCc-----ccCCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPV-----IFLSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~-----~~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|.++|+||.. ....+..++..+++|+.+..++.+...+. .-.+.||.+||.++..+-..
T Consensus 79 dgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~n------------ 146 (245)
T KOG1207|consen 79 DGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDN------------ 146 (245)
T ss_pred hhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCC------------
Confidence 9999999952 23456667889999999999998884432 12357999999866543322
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
.+.|..+|++.+.+.+.++-|. .++++.+.|..|+.......++ .+..-..++... +...|.
T Consensus 147 ----------HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWS-DP~K~k~mL~ri----Pl~rFa 211 (245)
T KOG1207|consen 147 ----------HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWS-DPDKKKKMLDRI----PLKRFA 211 (245)
T ss_pred ----------ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccC-CchhccchhhhC----chhhhh
Confidence 1569999999999999999885 6899999999998765443322 122222333333 667789
Q ss_pred eHHHHHHHHHHhhcCCC
Q 020747 229 EIRDVVYAHIRALEVPK 245 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~ 245 (322)
.+++++.++.+++.+..
T Consensus 212 EV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 212 EVDEVVNAVLFLLSDNS 228 (245)
T ss_pred HHHHHHhhheeeeecCc
Confidence 99999999999998753
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=144.87 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=139.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||.+++++|+++|++|++++|+.+... +..+++...+.++..+.+|++|+++++++++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~-~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALK-DTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999999999999988764332 2222222224467788999999998876653
Q ss_pred -CCCEEEEcccCccc---C---CCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -GCDGVFHTASPVIF---L---SDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -~~d~vih~A~~~~~---~---~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|++||+||.... . ..+.+.+.+++|+.++..+++.+.+.+ + .++||++||.... +.
T Consensus 82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---~~-------- 150 (227)
T PRK08862 82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---QD-------- 150 (227)
T ss_pred CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC---CC--------
Confidence 58999999974321 1 122344567789888888876654421 2 3689999986221 11
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.+|++.+.+.+.++.+ +|++++.|.||.+-++... ....+..
T Consensus 151 --------------~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~~~-----~~~~~~~----------- 200 (227)
T PRK08862 151 --------------LTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANGEL-----DAVHWAE----------- 200 (227)
T ss_pred --------------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCCcc-----CHHHHHH-----------
Confidence 034999999999999999886 4899999999998887321 1111111
Q ss_pred CcceeHHHHHHHHHHhhcCCCCCcc
Q 020747 225 YIFVEIRDVVYAHIRALEVPKASGR 249 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~~g~ 249 (322)
+ .+|++.+..+++.++...|+
T Consensus 201 ---~-~~~~~~~~~~l~~~~~~tg~ 221 (227)
T PRK08862 201 ---I-QDELIRNTEYIVANEYFSGR 221 (227)
T ss_pred ---H-HHHHHhheeEEEecccccce
Confidence 0 27888888888876555553
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=138.83 Aligned_cols=151 Identities=22% Similarity=0.244 Sum_probs=118.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
|+++||||+|.||.+++++|+++| +.|+++.|+.+.... +...++.....++.++++|++++++++++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999995 577777877111111 2323333335789999999999998887766 4
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
+|++||+||.... ...+.+.+.+++|+.+...+.+++.+. +.++||++||..+..+.+..
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~g~iv~~sS~~~~~~~~~~-------------- 145 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQ-GGGKIVNISSIAGVRGSPGM-------------- 145 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHH-TTEEEEEEEEGGGTSSSTTB--------------
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheec-cccceEEecchhhccCCCCC--------------
Confidence 6999999997543 223456789999999999999999994 67899999999776654431
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKE 182 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 182 (322)
..|+.+|.+.+.+++.+++|
T Consensus 146 --------~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 146 --------SAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHHHHHHh
Confidence 56999999999999999876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=147.13 Aligned_cols=213 Identities=19% Similarity=0.161 Sum_probs=151.4
Q ss_pred CCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh--------CCCCEEE
Q 020747 15 GAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV--------DGCDGVF 84 (322)
Q Consensus 15 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--------~~~d~vi 84 (322)
|++ +.||++++++|+++|++|++++|+..... +.+.++....+ ...+++|+++++++++++ .++|++|
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV 78 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLA-DALEELAKEYG-AEVIQCDLSDEESVEALFDEAVERFGGRIDILV 78 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHH-HHHHHHHHHTT-SEEEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHHHcC-CceEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence 667 99999999999999999999999875421 12222221111 235999999999887764 4579999
Q ss_pred EcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 85 HTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 85 h~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
|+++.... ...+.+.+.+++|+.++..+++++.+.+ .-+++|++||..+..+.+.
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~--------------- 143 (241)
T PF13561_consen 79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPG--------------- 143 (241)
T ss_dssp EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTT---------------
T ss_pred ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCcc---------------
Confidence 99986432 1223567899999999999999986642 2368999999854433221
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKE----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
...|+.+|++.+.+++.++.+ +|+++++|.||.+..+.... ......+........ +...+..+
T Consensus 144 -------~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-~~~~~~~~~~~~~~~----pl~r~~~~ 211 (241)
T PF13561_consen 144 -------YSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-IPGNEEFLEELKKRI----PLGRLGTP 211 (241)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-HHTHHHHHHHHHHHS----TTSSHBEH
T ss_pred -------chhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-cccccchhhhhhhhh----ccCCCcCH
Confidence 156999999999999999875 48999999999998875221 111122222233222 55667799
Q ss_pred HHHHHHHHHhhcCC--CCCccEEEecCC
Q 020747 231 RDVVYAHIRALEVP--KASGRYLLAGSV 256 (322)
Q Consensus 231 ~D~a~~~~~~~~~~--~~~g~~~~~~~~ 256 (322)
+|+|+++++++... ..+|..+..++.
T Consensus 212 ~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 212 EEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred HHHHHHHHHHhCccccCccCCeEEECCC
Confidence 99999999999865 567876655544
|
... |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=136.39 Aligned_cols=215 Identities=23% Similarity=0.251 Sum_probs=159.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+|||||||+|++++++|+++|++|.++.|++..... .. ..++...+|+.++..+...++++|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~-----~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAA-----LA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHh-----hc---CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 469999999999999999999999999999998755422 11 4689999999999999999999999999987
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
... ... ...........+..+++. . ++++++++|.. ....... +.|..+
T Consensus 73 ~~~-~~~----~~~~~~~~~~~~~a~~a~-~-~~~~~~~~s~~-~~~~~~~-----------------------~~~~~~ 121 (275)
T COG0702 73 LLD-GSD----AFRAVQVTAVVRAAEAAG-A-GVKHGVSLSVL-GADAASP-----------------------SALARA 121 (275)
T ss_pred ccc-ccc----chhHHHHHHHHHHHHHhc-C-CceEEEEeccC-CCCCCCc-----------------------cHHHHH
Confidence 543 111 233444555566666655 2 57889998887 2211111 459999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC---CCCcceeHHHHHHHHHHhhcCCC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA---FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
|..+|+.+. +.|++.+++|+..+|....... .......+.+..+ ...+++..+|+++++..++..+.
T Consensus 122 ~~~~e~~l~----~sg~~~t~lr~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~ 191 (275)
T COG0702 122 KAAVEAALR----SSGIPYTTLRRAAFYLGAGAAF------IEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPA 191 (275)
T ss_pred HHHHHHHHH----hcCCCeEEEecCeeeeccchhH------HHHHHhhCCceecCCCCceeeeEHHHHHHHHHHHhcCCc
Confidence 999999996 5599999999887776543211 1122223333333 56789999999999999998775
Q ss_pred CCc-cEEEec-CCCCHHHHHHHHHHhCCC
Q 020747 246 ASG-RYLLAG-SVAQHSDILKFLREHYPT 272 (322)
Q Consensus 246 ~~g-~~~~~~-~~~~~~e~~~~i~~~~~~ 272 (322)
..+ .|.+.+ +..+..++...+.+..+.
T Consensus 192 ~~~~~~~l~g~~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 192 TAGRTYELAGPEALTLAELASGLDYTIGR 220 (275)
T ss_pred ccCcEEEccCCceecHHHHHHHHHHHhCC
Confidence 444 776664 689999999999998863
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=139.36 Aligned_cols=228 Identities=18% Similarity=0.144 Sum_probs=157.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+.+++++|||||+.||.+++++|+++|.+|+...|+...... ...++. ....++.++++|+++..++.++.+
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~-~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEE-AKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999998744332 222222 235678889999999998887655
Q ss_pred ---CCCEEEEcccCccc---CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 ---GCDGVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ---~~d~vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
..|++||+||.+.. ...+-.+..+.+|..|...|.+.+.+.. ...|||++||... +.... .+....|
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~--~~~~~--~~~l~~~ 186 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG--GGKID--LKDLSGE 186 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc--cCccc--hhhccch
Confidence 45999999997543 3345568899999999999988876542 2269999999843 11110 0222223
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
....... ...|+.||.+...+..+++++. |+.+..+.||.|.++.... .......+.+.+... . +
T Consensus 187 ~~~~~~~-----~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r-~~~~~~~l~~~l~~~-----~--~ 253 (314)
T KOG1208|consen 187 KAKLYSS-----DAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR-VNLLLRLLAKKLSWP-----L--T 253 (314)
T ss_pred hccCccc-----hhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec-chHHHHHHHHHHHHH-----h--c
Confidence 2211111 1249999999999999999876 7999999999999985443 222222222222110 0 1
Q ss_pred eeHHHHHHHHHHhhcCCC---CCccE
Q 020747 228 VEIRDVVYAHIRALEVPK---ASGRY 250 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~---~~g~~ 250 (322)
-..++-|+..+.++.++. ..|.|
T Consensus 254 ks~~~ga~t~~~~a~~p~~~~~sg~y 279 (314)
T KOG1208|consen 254 KSPEQGAATTCYAALSPELEGVSGKY 279 (314)
T ss_pred cCHHHHhhheehhccCccccCccccc
Confidence 257788888888887764 33455
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=122.26 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=145.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|||.|+||||-+|++|+++..++||+|++++|++++... .+.+...+.|+.|+..+.+.+.+.|+||..-+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~---------~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA---------RQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc---------cccceeecccccChhhhHhhhcCCceEEEecc
Confidence 579999999999999999999999999999999876532 24578899999999999999999999997654
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
... ..+ ..........+++.++.. ++.|++.++.+.+.+-.+. ..-.++|..|. ..|..+
T Consensus 72 ~~~---~~~----~~~~~k~~~~li~~l~~a-gv~RllVVGGAGSL~id~g------~rLvD~p~fP~------ey~~~A 131 (211)
T COG2910 72 AGA---SDN----DELHSKSIEALIEALKGA-GVPRLLVVGGAGSLEIDEG------TRLVDTPDFPA------EYKPEA 131 (211)
T ss_pred CCC---CCh----hHHHHHHHHHHHHHHhhc-CCeeEEEEcCccceEEcCC------ceeecCCCCch------hHHHHH
Confidence 321 111 112334466778888777 8999999999977775442 22233333333 348888
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CC-CC-CCCcceeHHHHHHHHHHhhcCCC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QS-FA-FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~-~~-~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
+..+|.+ +.+..+.++.|+.+.|+..|-|+.+...-. .|+ .+ .. .--++|...|.|-+++.-++++.
T Consensus 132 ~~~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGerTg~yr---------lggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 132 LAQAEFL-DSLRAEKSLDWTFVSPAAFFEPGERTGNYR---------LGGDQLLVNAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred HHHHHHH-HHHhhccCcceEEeCcHHhcCCccccCceE---------eccceEEEcCCCceeeeHHHHHHHHHHHHhccc
Confidence 8888864 455556679999999999999965433111 111 11 12 44588999999999999999875
Q ss_pred C
Q 020747 246 A 246 (322)
Q Consensus 246 ~ 246 (322)
.
T Consensus 202 h 202 (211)
T COG2910 202 H 202 (211)
T ss_pred c
Confidence 3
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=133.69 Aligned_cols=209 Identities=15% Similarity=0.049 Sum_probs=136.0
Q ss_pred HHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----CCCEEEEcccCcccCCCCCcc
Q 020747 24 LVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----GCDGVFHTASPVIFLSDNPQA 99 (322)
Q Consensus 24 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vih~A~~~~~~~~~~~~ 99 (322)
++++|+++|++|++++|+..... ...++++|++|.++++++++ ++|+|||+||... ..++.
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~---~~~~~ 65 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG---TAPVE 65 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC---CCCHH
Confidence 47899999999999999764421 13467899999999988876 5899999999753 24567
Q ss_pred hhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCc------ccccccchhHHHHHHHH
Q 020747 100 DIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP------VLCKENKEWYSLAKTLA 172 (322)
Q Consensus 100 ~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~------~~~~~~~~~Y~~sK~~~ 172 (322)
..+++|+.++..+++++.+.+ ..++||++||..++. .........++.|...... ..+....+.|+.||.+.
T Consensus 66 ~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~ 144 (241)
T PRK12428 66 LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAE-WPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEAL 144 (241)
T ss_pred HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhc-cccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHH
Confidence 899999999999999998742 236999999995542 2110000001101000000 00011125699999999
Q ss_pred HHHHHHHH-HH---cCccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--C
Q 020747 173 EEAAWKFA-KE---NGIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--K 245 (322)
Q Consensus 173 e~~~~~~~-~~---~~~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~ 245 (322)
+.+.+.++ .+ +|+++++++||.+.++......... .....+ .. . +...+..++|+|+++.+++... .
T Consensus 145 ~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~pe~va~~~~~l~s~~~~~ 218 (241)
T PRK12428 145 ILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDS---DA--K-RMGRPATADEQAAVLVFLCSDAARW 218 (241)
T ss_pred HHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhh---cc--c-ccCCCCCHHHHHHHHHHHcChhhcC
Confidence 99999888 44 4899999999999998643211100 001111 00 0 2334568999999999988643 2
Q ss_pred CCccEEEec
Q 020747 246 ASGRYLLAG 254 (322)
Q Consensus 246 ~~g~~~~~~ 254 (322)
..|..+..+
T Consensus 219 ~~G~~i~vd 227 (241)
T PRK12428 219 INGVNLPVD 227 (241)
T ss_pred ccCcEEEec
Confidence 445544333
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-17 Score=128.39 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=128.0
Q ss_pred CCcEEEEECC-cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 7 EEKVVCVTGA-SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 7 ~~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
..|+|+|||+ .|.||.+|++++.++|+.|++..|+.+++.. +.. ..++.....|+++++++.++..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~--L~~----~~gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ--LAI----QFGLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh--HHH----hhCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 3588999886 5999999999999999999999999887743 221 2347888999999998876544
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc--CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV--HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~--~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
..|++||+||.... .....-++.+++|+.|..++.++.... ...+.||+++|..++-+.+..
T Consensus 80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~---------- 149 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFG---------- 149 (289)
T ss_pred CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchh----------
Confidence 35999999996422 223345678999999999999997643 134689999998666544432
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPF 199 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~ 199 (322)
+.|.+||++...+.+.+.-| +|++++-+-+|.|-..-
T Consensus 150 ------------~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~I 189 (289)
T KOG1209|consen 150 ------------SIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDI 189 (289)
T ss_pred ------------hhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceeccc
Confidence 66999999999998877654 58999999898886653
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=131.25 Aligned_cols=172 Identities=22% Similarity=0.253 Sum_probs=126.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-ChhhhhhccCCC-CcEEEEEccCCC-ccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGAT-ERLHLFKANLLE-EGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~Dl~~-~~~~~~~~~---- 78 (322)
+++|+|+||||++.||.++++.|+++|++|+++.|+.... ............ ..+....+|+++ .++++.+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~ 82 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE 82 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999988888776542 111111111111 357788899998 877766555
Q ss_pred ---CCCEEEEcccCcc---c---CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 ---GCDGVFHTASPVI---F---LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ---~~d~vih~A~~~~---~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||... . ...+.++..+++|+.+...+.+++.+....++||++||..+. .... .
T Consensus 83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~----~----- 152 (251)
T COG1028 83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPP----G----- 152 (251)
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCC----C-----
Confidence 4899999999642 1 334567889999999999999966654222299999998554 3221 0
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPF 199 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~ 199 (322)
...|+.||.+.+.+.+.++.+ +|++++.+.||.+-.+.
T Consensus 153 ------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~ 193 (251)
T COG1028 153 ------------QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPM 193 (251)
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcc
Confidence 145999999999999999866 58999999999666554
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=130.32 Aligned_cols=207 Identities=20% Similarity=0.212 Sum_probs=153.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCC-------C
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDG-------C 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~ 80 (322)
.+|+||||+..||.+++..+..+|++|+++.|+..+... ....++......+.+..+|+.|++++..++++ +
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 489999999999999999999999999999998766543 11122222233477999999999999888773 4
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|.+|||||.... ......+..+++|..|+.|+++++...+ +.++|+.+||..+.++-..-
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~Gy----------- 182 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGY----------- 182 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccc-----------
Confidence 999999995322 3334456799999999999999876653 23489999998776654431
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
+.|+.+|.+...+...+.+| +|+.++..-|+.+..|+........+ ...++..| ..+-+
T Consensus 183 -----------saYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP-~~t~ii~g------~ss~~ 244 (331)
T KOG1210|consen 183 -----------SAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKP-EETKIIEG------GSSVI 244 (331)
T ss_pred -----------cccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCc-hheeeecC------CCCCc
Confidence 55999999988888777776 48999999999999997543322111 12223332 34457
Q ss_pred eHHHHHHHHHHhhcCC
Q 020747 229 EIRDVVYAHIRALEVP 244 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~ 244 (322)
..+++|.+++.=+.+.
T Consensus 245 ~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 245 KCEEMAKAIVKGMKRG 260 (331)
T ss_pred CHHHHHHHHHhHHhhc
Confidence 8999999999877664
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-16 Score=121.19 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=126.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+.+.+||||||+..||.+|+++|.+.|-+|++..|+.. .+.+.....+.+....+|+.|.+.++++++
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~-----~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P 77 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEE-----RLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP 77 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH-----HHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC
Confidence 34689999999999999999999999999999999874 344443335678889999999987776665
Q ss_pred CCCEEEEcccCccc---C----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIF---L----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~---~----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
..+++||+||.... . ..+...+.+++|+.++..|..++.++ .....+|.+||.-++.+...
T Consensus 78 ~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~--------- 148 (245)
T COG3967 78 NLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMAS--------- 148 (245)
T ss_pred chheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccc---------
Confidence 46999999997533 1 11223457789999999999887764 13457999999766543332
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGP 198 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~ 198 (322)
.| .|..+|++.+.+..++.+. .++++.=+-|+.|-.+
T Consensus 149 -----~P--------vYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 149 -----TP--------VYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -----cc--------cchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 12 2999999999877766643 4889999999999875
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-16 Score=124.93 Aligned_cols=162 Identities=22% Similarity=0.294 Sum_probs=119.3
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC-CC-cChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-------
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP-NS-PKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG------- 79 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~------- 79 (322)
+++||||+|.||..+++.|+++|. +|+++.|+. .. .....+.++...+.++.++++|++|+++++++++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999984 788888882 22 22245555555567899999999999999988763
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
++.|||+|+...+ .+.+.....+..-+.|+.+|.+++... ..+.||.+||..++.|....
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis~~~G~~gq-------------- 146 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-PLDFFILFSSISSLLGGPGQ-------------- 146 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEHHHHTT-TTB--------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-CCCeEEEECChhHhccCcch--------------
Confidence 4899999997543 223345667888899999999999886 78999999999888877652
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCc
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTV 195 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v 195 (322)
..|+.+-...+.+++.... .|.++..|..+..
T Consensus 147 --------~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~W 178 (181)
T PF08659_consen 147 --------SAYAAANAFLDALARQRRS-RGLPAVSINWGAW 178 (181)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-EB
T ss_pred --------HhHHHHHHHHHHHHHHHHh-CCCCEEEEEcccc
Confidence 5699999999999887654 5899888876643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=127.94 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=124.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 78 (322)
..|-|||||+-...|..+|++|.++|+.|.+-...+... +.+..... .++...++.|++++++++++.+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~ga--e~L~~~~~-s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGA--ESLRGETK-SPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchH--HHHhhhhc-CCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 357899999999999999999999999999888544332 22222211 4678888999999999987765
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
+.-.|||+||.... ...+++.+.+++|+.|+..+..+..+.- --+|+|++||..+--+.+.
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p~---------- 174 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALPA---------- 174 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCcc----------
Confidence 34799999995422 2234567899999999999988876541 2369999999854222211
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGT 194 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~ 194 (322)
..+|+.||.+.|.+..++..| +|+++.++-||.
T Consensus 175 ------------~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~ 210 (322)
T KOG1610|consen 175 ------------LGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGF 210 (322)
T ss_pred ------------cccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCc
Confidence 156999999999999999887 599999999993
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=158.72 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=134.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcC---h-----------------------------------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPK---T----------------------------------- 47 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~---~----------------------------------- 47 (322)
++++++||||+|.||.+++++|+++ |.+|++++|+..... +
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4689999999999999999999998 699999999831000 0
Q ss_pred --------hhhhhccCCCCcEEEEEccCCCccchHHhhC------CCCEEEEcccCccc-----CCCCCcchhhhHHHHH
Q 020747 48 --------EHLRELDGATERLHLFKANLLEEGSFDSAVD------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMG 108 (322)
Q Consensus 48 --------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~ 108 (322)
..+..+...+.++.++.+|++|.++++++++ ++|+|||+||.... .+.+.+...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0111122224578899999999998887765 47999999996432 3345677899999999
Q ss_pred HHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-CccE
Q 020747 109 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDL 187 (322)
Q Consensus 109 ~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~ 187 (322)
+.++++++... ..++||++||..++++.... ..|+.+|...+.+.+.++.++ ++++
T Consensus 2156 ~~~Ll~al~~~-~~~~IV~~SSvag~~G~~gq----------------------s~YaaAkaaL~~la~~la~~~~~irV 2212 (2582)
T TIGR02813 2156 LLSLLAALNAE-NIKLLALFSSAAGFYGNTGQ----------------------SDYAMSNDILNKAALQLKALNPSAKV 2212 (2582)
T ss_pred HHHHHHHHHHh-CCCeEEEEechhhcCCCCCc----------------------HHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 99999999876 55789999999888766532 559999999999999888876 7899
Q ss_pred EEEcCCCccCCC
Q 020747 188 VAIHPGTVIGPF 199 (322)
Q Consensus 188 ~~~rp~~v~G~~ 199 (322)
+.+.||.+-|+.
T Consensus 2213 ~sI~wG~wdtgm 2224 (2582)
T TIGR02813 2213 MSFNWGPWDGGM 2224 (2582)
T ss_pred EEEECCeecCCc
Confidence 999999987754
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-15 Score=117.89 Aligned_cols=174 Identities=21% Similarity=0.218 Sum_probs=124.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeC-CCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRD-PNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.+.|+||||+..||--|+++|++. |.++++-.++ ++.+ ...++.....+++++.++.|+++.++++++++
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a-~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA-ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh-hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 367999999999999999999975 6666555444 4433 22223333457899999999999888776654
Q ss_pred --CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCcc-----------EEEEecchhhhcc
Q 020747 79 --GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIK-----------RVVLTSSIGAMLL 136 (322)
Q Consensus 79 --~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~-----------~~i~~SS~~~~~~ 136 (322)
+.|.++++||.... .....+..-+++|..|+..+.+++.+. ...+ .||++||...--+
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~ 161 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG 161 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence 56999999996432 122336678999999999998886543 0122 6898988633211
Q ss_pred CCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCC
Q 020747 137 NETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~ 201 (322)
... + ....+|..||++...+.++++-+. ++-++.++||+|-.....
T Consensus 162 ~~~-------------~------~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg 210 (249)
T KOG1611|consen 162 GFR-------------P------GGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG 210 (249)
T ss_pred CCC-------------C------cchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC
Confidence 110 0 112669999999999999988664 788999999999776533
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=117.23 Aligned_cols=214 Identities=19% Similarity=0.178 Sum_probs=157.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.|+-..+||||...+|.+.++.|.++|..|++++...+.... ...++ +.++.+...|++..+++++++.
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~-vakel---g~~~vf~padvtsekdv~aala~ak~kfg 82 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGAD-VAKEL---GGKVVFTPADVTSEKDVRAALAKAKAKFG 82 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchH-HHHHh---CCceEEeccccCcHHHHHHHHHHHHhhcc
Confidence 456788999999999999999999999999999987766532 33333 5678999999999999887765
Q ss_pred CCCEEEEcccCccc-----------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-------c--cEEEEecchhhhccCC
Q 020747 79 GCDGVFHTASPVIF-----------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-------I--KRVVLTSSIGAMLLNE 138 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-------~--~~~i~~SS~~~~~~~~ 138 (322)
+.|..+||||.... ..-+++++.+++|+.||.|+++.....+| . +-+|++.|.+++.|..
T Consensus 83 rld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~ 162 (260)
T KOG1199|consen 83 RLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT 162 (260)
T ss_pred ceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc
Confidence 46999999984210 12334667889999999999998654432 1 2477888876665544
Q ss_pred CCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHH
Q 020747 139 TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215 (322)
Q Consensus 139 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~ 215 (322)
.. ..|+.||.+.-.+..-++++. |++++.+.||..-.|. ....+..+..++
T Consensus 163 gq----------------------aaysaskgaivgmtlpiardla~~gir~~tiapglf~tpl----lsslpekv~~fl 216 (260)
T KOG1199|consen 163 GQ----------------------AAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPL----LSSLPEKVKSFL 216 (260)
T ss_pred ch----------------------hhhhcccCceEeeechhhhhcccCceEEEeecccccCChh----hhhhhHHHHHHH
Confidence 32 669999998876655555554 9999999999876665 334455666666
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCccEE
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYL 251 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~ 251 (322)
....++|+ ..-|+.+.+..+-.+++++..+|..+
T Consensus 217 a~~ipfps--rlg~p~eyahlvqaiienp~lngevi 250 (260)
T KOG1199|consen 217 AQLIPFPS--RLGHPHEYAHLVQAIIENPYLNGEVI 250 (260)
T ss_pred HHhCCCch--hcCChHHHHHHHHHHHhCcccCCeEE
Confidence 64433442 23478888888888999998888443
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-15 Score=118.79 Aligned_cols=269 Identities=16% Similarity=0.147 Sum_probs=170.4
Q ss_pred CCCcEEEEECCcchhHHHHHH-----HHHHCC----CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh
Q 020747 6 GEEKVVCVTGASGFVASWLVK-----LLLQRG----YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
.+..+.+.-+++|+|+..|.- ++-+.+ |+|++++|++.+... ++...|..- +
T Consensus 10 ~~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ri-------------tw~el~~~G------i 70 (315)
T KOG3019|consen 10 GKSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARI-------------TWPELDFPG------I 70 (315)
T ss_pred CccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccc-------------ccchhcCCC------C
Confidence 345778889999999988876 444444 899999998876432 222222111 1
Q ss_pred hCCCCEEEEcccCc-----ccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 77 VDGCDGVFHTASPV-----IFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 77 ~~~~d~vih~A~~~-----~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.-.|+.++|++|.. ..+...-..++....+..|..++++..++.. .+.+|.+|.. ++|-... ...++|+
T Consensus 71 p~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gv-a~y~pS~----s~eY~e~ 145 (315)
T KOG3019|consen 71 PISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGV-AVYVPSE----SQEYSEK 145 (315)
T ss_pred ceehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEee-EEecccc----ccccccc
Confidence 11345555555532 1122222234455556678889999888743 3579999998 6664433 5677887
Q ss_pred CCCCcccccccchhHHHHHHHHH--HHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHH--HHHcCCCCCC--CC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAE--EAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVIL--NLINGDQSFA--FP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e--~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~--~~~~g~~~~~--~~ 224 (322)
.+.... + |- |.+..| ..+..- ...++++++|.|.|.|.+.... ..++. ++..|.++-. |.
T Consensus 146 ~~~qgf------d-~~-srL~l~WE~aA~~~--~~~~r~~~iR~GvVlG~gGGa~----~~M~lpF~~g~GGPlGsG~Q~ 211 (315)
T KOG3019|consen 146 IVHQGF------D-IL-SRLCLEWEGAALKA--NKDVRVALIRIGVVLGKGGGAL----AMMILPFQMGAGGPLGSGQQW 211 (315)
T ss_pred cccCCh------H-HH-HHHHHHHHHHhhcc--CcceeEEEEEEeEEEecCCcch----hhhhhhhhhccCCcCCCCCee
Confidence 766543 2 11 221111 111111 1268999999999999875432 22233 3344444433 99
Q ss_pred CcceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCC---CCCCCCCc----cCCCCccc-----cch
Q 020747 225 YIFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPT---LLRSGKLE----EKYQPTIK-----VSQ 291 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~---~~~~~~~~----~~~~~~~~-----~~~ 291 (322)
++|||++|++..+..+++++...|+.|.. +++.+..|+.+.+.++++. .++|.... .+...-.+ +-.
T Consensus 212 fpWIHv~DL~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~P 291 (315)
T KOG3019|consen 212 FPWIHVDDLVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLP 291 (315)
T ss_pred eeeeehHHHHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccc
Confidence 99999999999999999998888887765 7899999999999999864 34555443 22222223 334
Q ss_pred HHHHhhCCcc--cchhhhHHHHH
Q 020747 292 ERAKSLGINF--TPWEVGVRGCI 312 (322)
Q Consensus 292 ~k~~~lg~~~--~~~~~~l~~~~ 312 (322)
.|+.++||++ +.++++++++.
T Consensus 292 qral~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 292 QRALELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred hhHhhcCceeechHHHHHHHHHh
Confidence 5667789987 66888888764
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=119.82 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=129.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccc----hHHhhCC--CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGS----FDSAVDG--CD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~----~~~~~~~--~d 81 (322)
.=.+|||||..||++.+++|+++|++|++++|++++... ...++. ....++..+..|.++++. +++.+.+ +.
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~-v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg 128 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEA-VAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG 128 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence 568899999999999999999999999999999876543 112221 113568889999998765 4444443 57
Q ss_pred EEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 82 GVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 82 ~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|||+|...+ .......+++.+|+.++..+.+...+.| +.+-+|++||.++..+.+.
T Consensus 129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~------------ 196 (312)
T KOG1014|consen 129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPL------------ 196 (312)
T ss_pred EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChh------------
Confidence 99999997542 1122346788999999998888876542 4567999999866654432
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~ 201 (322)
++.|+.||+..+.+..++.+|+ |+.+..+-|..|-++...
T Consensus 197 ----------~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~ 239 (312)
T KOG1014|consen 197 ----------LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAK 239 (312)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccc
Confidence 2679999999999999998876 899999999999887543
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=104.96 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=121.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|++|.+||.||||-.|+.+++.+++.+ -+|+++.|+..... .....+.....|....++....++++|+.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~--------at~k~v~q~~vDf~Kl~~~a~~~qg~dV~ 87 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDP--------ATDKVVAQVEVDFSKLSQLATNEQGPDVL 87 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCc--------cccceeeeEEechHHHHHHHhhhcCCceE
Confidence 567899999999999999999999998 47999998852211 11345677778888888888888899999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
+.+-|....- .-.+..+.+.-+..+.+.+++++. |+++|+.+||..+ .+... -
T Consensus 88 FcaLgTTRgk--aGadgfykvDhDyvl~~A~~AKe~-Gck~fvLvSS~GA-d~sSr-----------------------F 140 (238)
T KOG4039|consen 88 FCALGTTRGK--AGADGFYKVDHDYVLQLAQAAKEK-GCKTFVLVSSAGA-DPSSR-----------------------F 140 (238)
T ss_pred EEeecccccc--cccCceEeechHHHHHHHHHHHhC-CCeEEEEEeccCC-Ccccc-----------------------e
Confidence 9887754332 223567888888899999999997 9999999999832 11111 3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCc-cEEEEcCCCccCCCCC
Q 020747 164 WYSLAKTLAEEAAWKFAKENGI-DLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~-~~~~~rp~~v~G~~~~ 201 (322)
.|.+.|-..|+-+.++ ++ .++|+|||.+.|....
T Consensus 141 lY~k~KGEvE~~v~eL----~F~~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 141 LYMKMKGEVERDVIEL----DFKHIIILRPGPLLGERTE 175 (238)
T ss_pred eeeeccchhhhhhhhc----cccEEEEecCcceeccccc
Confidence 4999999999888654 34 6789999999997644
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=114.98 Aligned_cols=214 Identities=25% Similarity=0.205 Sum_probs=131.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc-hHHhhCC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS-FDSAVDG---- 79 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~---- 79 (322)
+++.++|||+||||.+|+-+++.|+++|+.|.+++|+...... .+. ....+...+-+..|.....+ ...+++.
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~-~~~-~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~ 153 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAED-LLG-VFFVDLGLQNVEADVVTAIDILKKLVEAVPKG 153 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhh-hhc-ccccccccceeeeccccccchhhhhhhhcccc
Confidence 3456899999999999999999999999999999998766533 111 11123345555555554443 3333332
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
..+++-+++-..... +-..-+.+...|++|++++|+.+ |++|||++||+..--.... .+.. .
T Consensus 154 ~~~v~~~~ggrp~~e--d~~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~~-------------~~~~--~ 215 (411)
T KOG1203|consen 154 VVIVIKGAGGRPEEE--DIVTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQP-------------PNIL--L 215 (411)
T ss_pred ceeEEecccCCCCcc--cCCCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCCC-------------chhh--h
Confidence 346665655332211 11234567899999999999888 9999999998732111110 0000 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~ 239 (322)
. ...+-.+|..+|+++. +.|++.++|||+...-.......... .-......+. ..--.+.-.|+|+.++.
T Consensus 216 ~-~~~~~~~k~~~e~~~~----~Sgl~ytiIR~g~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~i~r~~vael~~~ 285 (411)
T KOG1203|consen 216 L-NGLVLKAKLKAEKFLQ----DSGLPYTIIRPGGLEQDTGGQREVVV-DDEKELLTVD----GGAYSISRLDVAELVAK 285 (411)
T ss_pred h-hhhhhHHHHhHHHHHH----hcCCCcEEEeccccccCCCCcceecc-cCcccccccc----ccceeeehhhHHHHHHH
Confidence 0 0125578888888775 67999999999987654322110000 0000000000 11125778899999999
Q ss_pred hhcCCCCCc
Q 020747 240 ALEVPKASG 248 (322)
Q Consensus 240 ~~~~~~~~g 248 (322)
++.+....+
T Consensus 286 all~~~~~~ 294 (411)
T KOG1203|consen 286 ALLNEAATF 294 (411)
T ss_pred HHhhhhhcc
Confidence 998876555
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=109.89 Aligned_cols=209 Identities=17% Similarity=0.095 Sum_probs=143.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeE--EEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTV--KATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.+.+||||++..||.-++..+.+++.+. ++..|..... +.+.... ...+....+|++....+.++++
T Consensus 6 r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~--~~L~v~~--gd~~v~~~g~~~e~~~l~al~e~~r~k~g 81 (253)
T KOG1204|consen 6 RKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAEL--EGLKVAY--GDDFVHVVGDITEEQLLGALREAPRKKGG 81 (253)
T ss_pred ceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccc--cceEEEe--cCCcceechHHHHHHHHHHHHhhhhhcCC
Confidence 4789999999999999999999988664 3444443331 1111111 2344556677777665555554
Q ss_pred CCCEEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhcC-C---ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 GCDGVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKVH-S---IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~---~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
+-|.|||+||...+ .+.+.|.++|+.|+.+...+...+.+.. + .+-+|++||.+++-+-..
T Consensus 82 kr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~------- 154 (253)
T KOG1204|consen 82 KRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSS------- 154 (253)
T ss_pred ceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccH-------
Confidence 34999999996433 3445688999999999999988776641 1 256999999877754332
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCC---CccHH---HHHHHHcCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPIL---NFGAE---VILNLINGD 218 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~---~~~~~---~~~~~~~g~ 218 (322)
+..|+.+|++-+.+.+.++.|. ++++..++||.|-.+...... ...+. +...+.
T Consensus 155 ---------------wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~--- 216 (253)
T KOG1204|consen 155 ---------------WAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELK--- 216 (253)
T ss_pred ---------------HHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHH---
Confidence 2679999999999999999764 899999999999876532111 11121 222222
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC-CCCcc
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP-KASGR 249 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~-~~~g~ 249 (322)
..-+.+.+.+.+..+..+++.. ..+|.
T Consensus 217 ----~~~~ll~~~~~a~~l~~L~e~~~f~sG~ 244 (253)
T KOG1204|consen 217 ----ESGQLLDPQVTAKVLAKLLEKGDFVSGQ 244 (253)
T ss_pred ----hcCCcCChhhHHHHHHHHHHhcCccccc
Confidence 3345677899999999999886 44453
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=106.01 Aligned_cols=216 Identities=17% Similarity=0.116 Sum_probs=153.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
-+.++.|+.||.|+++|+.-...+++|..+.|+..+...+ .....+.++++|.....-+.....++..++-+++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~------sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~g 126 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLS------SWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMG 126 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhh------CCCcccchhhccccccCcchhhhcCCcccHHHhc
Confidence 4678999999999999999999999999999987643221 1235678888888766666777778888888887
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.+. +...+..+|-....+-.+++.+. ++++|+|+|-. .+ +-+.. .+ +-|-.+
T Consensus 127 gfg-----n~~~m~~ing~ani~a~kaa~~~-gv~~fvyISa~-d~-~~~~~-------------i~-------rGY~~g 178 (283)
T KOG4288|consen 127 GFG-----NIILMDRINGTANINAVKAAAKA-GVPRFVYISAH-DF-GLPPL-------------IP-------RGYIEG 178 (283)
T ss_pred Ccc-----chHHHHHhccHhhHHHHHHHHHc-CCceEEEEEhh-hc-CCCCc-------------cc-------hhhhcc
Confidence 642 33567778888888889999998 99999999975 22 22210 01 339999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCcc----HHHHHHHHcC------C-CCCC-CCCcceeHHHHHHH
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG----AEVILNLING------D-QSFA-FPYIFVEIRDVVYA 236 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~----~~~~~~~~~g------~-~~~~-~~~~~i~~~D~a~~ 236 (322)
|+++|.-+. +.++++-.++|||.+||...-...... ...+...... + +..+ -..+.+.++++|.+
T Consensus 179 KR~AE~Ell---~~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~a 255 (283)
T KOG4288|consen 179 KREAEAELL---KKFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALA 255 (283)
T ss_pred chHHHHHHH---HhcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHH
Confidence 999997654 456889999999999998433222111 1112222211 1 3334 67889999999999
Q ss_pred HHHhhcCCCCCccEEEecCCCCHHHHHHHHHH
Q 020747 237 HIRALEVPKASGRYLLAGSVAQHSDILKFLRE 268 (322)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~ 268 (322)
.+.+++++...| .+++.||.++-.+
T Consensus 256 al~ai~dp~f~G-------vv~i~eI~~~a~k 280 (283)
T KOG4288|consen 256 ALKAIEDPDFKG-------VVTIEEIKKAAHK 280 (283)
T ss_pred HHHhccCCCcCc-------eeeHHHHHHHHHH
Confidence 999999986554 4455666555443
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=100.25 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||+++++.|.++|++|++++|+..... ....++...+.++..+.+|++++++++++++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ-ATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999998754321 2223332223457788999999988877553
Q ss_pred CCCEEEEcccCccc---CCCCCcchhhhHHHHHHHHHHHHHh----hc------CCccEEEEecchhh
Q 020747 79 GCDGVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCA----KV------HSIKRVVLTSSIGA 133 (322)
Q Consensus 79 ~~d~vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~----~~------~~~~~~i~~SS~~~ 133 (322)
++|++||+||.... .+..+......+|+.++....+.+. +. .+.+||-.+||.+.
T Consensus 93 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 93 RIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 58999999996432 1111111112344444433333332 21 13467888888743
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=106.35 Aligned_cols=179 Identities=15% Similarity=0.041 Sum_probs=122.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.+|+||.|||++|.||+.++..|+.++ .++..+++..... +.+ .+..... .....+.+|+.++.+.++++|+|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g--~a~-Dl~~~~~--~~~v~~~td~~~~~~~l~gaDvV 80 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG--VAA-DLSHIDT--PAKVTGYADGELWEKALRGADLV 80 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc--ccc-chhhcCc--CceEEEecCCCchHHHhCCCCEE
Confidence 467899999999999999999999766 6899998832221 111 1110011 22345666767767889999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|++||..... ..++.+.+..|+..+.++++++++. +++++|+++|.... .-..-. ...+.+.+.+.+. .
T Consensus 81 VitaG~~~~~-~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvd-v~~~~~--~~~~~~~sg~p~~------~ 149 (321)
T PTZ00325 81 LICAGVPRKP-GMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVN-STVPIA--AETLKKAGVYDPR------K 149 (321)
T ss_pred EECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHH-HHHHHH--HhhhhhccCCChh------h
Confidence 9999975332 2345789999999999999999998 89999999996221 110000 0011122222232 3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
.||.+-+-.-++-..+++..++...-++ +.|+|....
T Consensus 150 viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 150 LFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred eeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 4777767777888888888899888888 888887654
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=93.88 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=75.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-------CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG-------CD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~d 81 (322)
|+++|||||||+|+ +++.|.++|++|++++|+..... .....+. ...++..+.+|++|++++.+++++ +|
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~-~l~~~l~-~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id 77 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLE-NVKREST-TPESITPLPLDYHDDDALKLAIKSTIEKNGPFD 77 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHH-HHHHHhh-cCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCe
Confidence 47999999998876 99999999999999998753321 1111122 234688899999999998887763 35
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc----EEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK----RVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~----~~i~~SS~ 131 (322)
.+|+. +.+.++.++.++|++. +++ +|+|+=..
T Consensus 78 ~lv~~-----------------vh~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs 113 (177)
T PRK08309 78 LAVAW-----------------IHSSAKDALSVVCREL-DGSSETYRLFHVLGS 113 (177)
T ss_pred EEEEe-----------------ccccchhhHHHHHHHH-ccCCCCceEEEEeCC
Confidence 55543 3455678999999998 888 88887544
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=95.34 Aligned_cols=181 Identities=22% Similarity=0.229 Sum_probs=122.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-----eEEEEEeCCCCcCh--hhhhhc-cCCCCcEEEEEccCCCccchHHhhC--
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-----TVKATVRDPNSPKT--EHLREL-DGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~--~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
|.++|||++..||-+||.+|++... .++...|+.++... ..+.+. ++..-++++++.|+++..++.++.+
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di 83 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDI 83 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHH
Confidence 8899999999999999999998753 36667787766533 122221 2223468899999999877655443
Q ss_pred -----CCCEEEEcccCcc--------------------------------cCCCCCcchhhhHHHHHHHHHHHHHhhc--
Q 020747 79 -----GCDGVFHTASPVI--------------------------------FLSDNPQADIVDPAVMGTLNVLRSCAKV-- 119 (322)
Q Consensus 79 -----~~d~vih~A~~~~--------------------------------~~~~~~~~~~~~~N~~~~~~l~~~~~~~-- 119 (322)
..|+|+-+||... ..+.+....+++.|+.|...+++.+.+.
T Consensus 84 ~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll~ 163 (341)
T KOG1478|consen 84 KQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLC 163 (341)
T ss_pred HHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHhh
Confidence 5799999998321 1234556689999999999999887664
Q ss_pred -CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCc
Q 020747 120 -HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTV 195 (322)
Q Consensus 120 -~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v 195 (322)
....++|.+||..+- +.+ .--|+-.+ .. ...+|.-||.+.+-+--...+.. |+.-.++.||..
T Consensus 164 ~~~~~~lvwtSS~~a~---kk~-----lsleD~q~-~k----g~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~ 230 (341)
T KOG1478|consen 164 HSDNPQLVWTSSRMAR---KKN-----LSLEDFQH-SK----GKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIF 230 (341)
T ss_pred cCCCCeEEEEeecccc---ccc-----CCHHHHhh-hc----CCCCcchhHHHHHHHHHHHhccccccchhhhcccCcee
Confidence 123489999997432 111 00111100 00 01359999999998877666553 777888999987
Q ss_pred cCCCCCC
Q 020747 196 IGPFFQP 202 (322)
Q Consensus 196 ~G~~~~~ 202 (322)
.......
T Consensus 231 tt~~~~~ 237 (341)
T KOG1478|consen 231 TTNSFSE 237 (341)
T ss_pred ecchhhh
Confidence 7665443
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=99.62 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=119.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+||.|||++|.||++++..|+.++ .++..+++.+... ..+ .+..... .....++++.+++.+.++++|+|||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g--~a~-Dl~~~~~--~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPG--VAA-DVSHINT--PAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCe--eEc-hhhhCCc--CceEEEEeCCCCHHHHcCCCCEEEE
Confidence 3689999999999999999999877 4789998876211 111 1110011 1123355555678889999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+||..... ...+.+....|+..++++++.+++. +.+++|+++|--.....+-- ...+...+.+.|. ..|
T Consensus 93 tAG~~~~~-g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~---t~~~~~~s~~p~~------~vi 161 (323)
T PLN00106 93 PAGVPRKP-GMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIA---AEVLKKAGVYDPK------KLF 161 (323)
T ss_pred eCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHH---HHHHHHcCCCCcc------eEE
Confidence 99975332 3456789999999999999999998 78899999885221000000 0011122222222 458
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPF 199 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~ 199 (322)
|.++...+++-..++++.|+...-++ +.|+|..
T Consensus 162 G~~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 162 GVTTLDVVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred EEecchHHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 88999999999999999998887774 4556654
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-09 Score=84.59 Aligned_cols=211 Identities=16% Similarity=0.082 Sum_probs=141.2
Q ss_pred CCCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+++|++||+|-. .-|+..|++.|.++|.++......+ +. ...++++.........++||+++.++++++|+
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l-~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~ 80 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RL-EKRVEELAEELGSDLVLPCDVTNDESIDALFATIKK 80 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HH-HHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHH
Confidence 3678999999965 5799999999999999988777654 21 13334443322334678999999999988876
Q ss_pred ---CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
..|.+||+-|... +.+.+.+...+++-.-+...+.+++++.+. -..+|-.+ |+|...
T Consensus 81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs~r------ 150 (259)
T COG0623 81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGSER------ 150 (259)
T ss_pred hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----ecccee------
Confidence 4699999998543 133444556667777777788888887643 23455443 222211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
. ..+++.-|.+|++.|..++.++.+. |+|++.|.-|++-.-.... ......++.......
T Consensus 151 ~------------vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasg-I~~f~~~l~~~e~~a---- 213 (259)
T COG0623 151 V------------VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASG-IGDFRKMLKENEANA---- 213 (259)
T ss_pred e------------cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhc-cccHHHHHHHHHhhC----
Confidence 0 0112669999999999999999875 8999999988775432111 111122222222222
Q ss_pred CCCcceeHHHHHHHHHHhhcCC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
+.+.-+.++||...-.+++..-
T Consensus 214 Pl~r~vt~eeVG~tA~fLlSdL 235 (259)
T COG0623 214 PLRRNVTIEEVGNTAAFLLSDL 235 (259)
T ss_pred CccCCCCHHHhhhhHHHHhcch
Confidence 5666778999999999988763
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=93.38 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-------CeEEEEEeCCCCcChhh-hhhccCCCCcEEEEEccCCCccchHHhhCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-------YTVKATVRDPNSPKTEH-LRELDGATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
.+|+||||+|+||++++..|+..+ .+|++++++++....+. ...+ .+-......|+....++.+.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl---~d~~~~~~~~~~~~~~~~~~l~~a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMEL---QDCAFPLLKSVVATTDPEEAFKDV 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeeh---hhccccccCCceecCCHHHHhCCC
Confidence 579999999999999999999854 58999999654211100 0000 000002233555556777888999
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+||..... ..+..+.++.|+.-...+.+.+.+..... .+|.+|.-.-+- ...+-|.++..|..
T Consensus 80 DiVI~tAG~~~~~-~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~--------t~~~~k~~~~~~~~-- 148 (325)
T cd01336 80 DVAILVGAMPRKE-GMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTN--------ALILLKYAPSIPKE-- 148 (325)
T ss_pred CEEEEeCCcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHH--------HHHHHHHcCCCCHH--
Confidence 9999999975443 23347899999999999999998873223 455555421000 00111111111110
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCC
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~ 202 (322)
..=+-+....-++-..++++.+++..-++-..|+|.....
T Consensus 149 ---~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~s 188 (325)
T cd01336 149 ---NFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSST 188 (325)
T ss_pred ---HEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCCC
Confidence 0011123333455555666778887777777788875443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=90.64 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=60.4
Q ss_pred CcEEEEECCcchhHHH--HHHHHHHCCCeEEEEEeCCCCcC----------hhhhh-hccCCCCcEEEEEccCCCccchH
Q 020747 8 EKVVCVTGASGFVASW--LVKLLLQRGYTVKATVRDPNSPK----------TEHLR-ELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
+|++|||||++.+|.+ +++.| +.|.+|+++++...... .+... .....+..+..+++|++++++++
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~ 119 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQ 119 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 5899999999999999 89999 99999988885432211 01111 12222345678899999999887
Q ss_pred HhhC-------CCCEEEEcccCc
Q 020747 75 SAVD-------GCDGVFHTASPV 90 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~ 90 (322)
++++ ++|++||++|..
T Consensus 120 ~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 120 KVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHhcCCCCEEEECCccC
Confidence 7665 579999999854
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-09 Score=87.49 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCCcEEEEECCc----------------chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCC
Q 020747 6 GEEKVVCVTGAS----------------GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69 (322)
Q Consensus 6 ~~~~~ilVtGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (322)
+++|+||||+|. ||+|++||++|+++|++|+++++..+... .... ....+..+.+|...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~-~~~~----~~~~~~~V~s~~d~ 75 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKP-NDIN----NQLELHPFEGIIDL 75 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCC-cccC----CceeEEEEecHHHH
Confidence 357999999886 99999999999999999998876432111 0000 01234456663333
Q ss_pred ccchHHhhC--CCCEEEEcccCc
Q 020747 70 EGSFDSAVD--GCDGVFHTASPV 90 (322)
Q Consensus 70 ~~~~~~~~~--~~d~vih~A~~~ 90 (322)
.+.+.++++ ++|+|||+||..
T Consensus 76 ~~~l~~~~~~~~~D~VIH~AAvs 98 (229)
T PRK09620 76 QDKMKSIITHEKVDAVIMAAAGS 98 (229)
T ss_pred HHHHHHHhcccCCCEEEECcccc
Confidence 357777775 689999999974
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=87.18 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=112.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCC--cChhhh--hhcc-CCCCcEEEEEccCCCccchHH
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNS--PKTEHL--RELD-GATERLHLFKANLLEEGSFDS 75 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~--~~~~-~~~~~~~~~~~Dl~~~~~~~~ 75 (322)
.+||.|+|++|.+|+.++..|+..|. ++..+++.+.. .....+ .... ....++.. + ....+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-----~--~~~~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-----T--DDPNV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-----e--cCcHH
Confidence 46899999999999999999998874 78888885432 111111 0000 00011221 1 12245
Q ss_pred hhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCC-C
Q 020747 76 AVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWF-S 153 (322)
Q Consensus 76 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~-~ 153 (322)
.++++|+||.+||..... ..+..+.++.|+.-.+.+...+.+... -..+|.+|--.-+- ....-+.+. .
T Consensus 75 ~~~daDivvitaG~~~k~-g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~--------t~~~~k~sg~~ 145 (322)
T cd01338 75 AFKDADWALLVGAKPRGP-GMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTN--------ALIAMKNAPDI 145 (322)
T ss_pred HhCCCCEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHH--------HHHHHHHcCCC
Confidence 678999999999975332 334568899999999999999999732 33455555321000 000001110 1
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
.+. ..||.+++..+++...+++.+|++...+|...|||+...
T Consensus 146 p~~------~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~ 187 (322)
T cd01338 146 PPD------NFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP 187 (322)
T ss_pred ChH------heEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc
Confidence 111 459999999999999999999999999999999998743
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=90.05 Aligned_cols=97 Identities=25% Similarity=0.345 Sum_probs=75.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|+|.|+ |+||+.++..|+++| ++|++.+|+...+.. .... ...+++..+.|+.|.+++.+++++.|+|||++
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~--i~~~--~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCAR--IAEL--IGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHH--HHhh--ccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 68999997 999999999999999 899999998755432 2111 13479999999999999999999999999998
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
.+.. ..+++++|.+. |+ .++=+|
T Consensus 77 p~~~-----------------~~~i~ka~i~~-gv-~yvDts 99 (389)
T COG1748 77 PPFV-----------------DLTILKACIKT-GV-DYVDTS 99 (389)
T ss_pred Cchh-----------------hHHHHHHHHHh-CC-CEEEcc
Confidence 6431 12678888887 64 344333
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-08 Score=82.28 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=57.0
Q ss_pred CcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCC--ccchHHhhCCCCEEEEcccCcccC
Q 020747 16 ASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE--EGSFDSAVDGCDGVFHTASPVIFL 93 (322)
Q Consensus 16 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~d~vih~A~~~~~~ 93 (322)
+|||+|++|+++|+++|++|++++|+...... ...++.++..+-.+ .+.+.+.++++|+|||+||.....
T Consensus 24 SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~--------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd~~ 95 (229)
T PRK06732 24 STGQLGKIIAETFLAAGHEVTLVTTKTAVKPE--------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSDYT 95 (229)
T ss_pred cchHHHHHHHHHHHhCCCEEEEEECcccccCC--------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCCce
Confidence 48999999999999999999999875422100 01245555544322 234556677899999999975321
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhh
Q 020747 94 SDNPQADIVDPAVMGTLNVLRSCAK 118 (322)
Q Consensus 94 ~~~~~~~~~~~N~~~~~~l~~~~~~ 118 (322)
+....-..+...+.++.+.+++
T Consensus 96 ---~~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 96 ---PVYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ---ehhhhhhhhhhhhhhhhhhhcc
Confidence 1111112344455566666554
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=80.58 Aligned_cols=170 Identities=17% Similarity=0.136 Sum_probs=103.9
Q ss_pred cEEEEECCcchhHHHHHHHHHH-C--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQ-R--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|||+|+||+|.+|++++..|.. . ++++.+++|++.... ..+ .+.. ......+.+ .+.+++.+.++++|+||.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g-~al-Dl~~-~~~~~~i~~--~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPG-VAV-DLSH-IPTAVKIKG--FSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcc-eeh-hhhc-CCCCceEEE--eCCCCHHHHcCCCCEEEE
Confidence 5899999999999999998865 2 467888887643211 000 1110 011122333 233455667789999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhh----hccCCCCCCCCccccCCCCCCccccccc
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGA----MLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~----~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
++|...... ....+.+..|.....++++++.+. +.+++|.+.|--. +.-. .........+..
T Consensus 76 taG~~~~~~-~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~------~~~~~~sg~p~~------ 141 (312)
T PRK05086 76 SAGVARKPG-MDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAA------EVLKKAGVYDKN------ 141 (312)
T ss_pred cCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHH------HHHHHhcCCCHH------
Confidence 999754432 344688999999999999999998 7888888887422 1100 000011111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCC
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPF 199 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~ 199 (322)
...|.+-...-++-..+++..+++..-++ +.|+|..
T Consensus 142 -rvig~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeH 177 (312)
T PRK05086 142 -KLFGVTTLDVIRSETFVAELKGKQPGEVE-VPVIGGH 177 (312)
T ss_pred -HEEeeecHHHHHHHHHHHHHhCCChhheE-EEEEEec
Confidence 11233323334566666667788777777 7788866
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.9e-07 Score=79.89 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=99.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCC-------CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-----------c
Q 020747 10 VVCVTGASGFVASWLVKLLLQRG-------YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-----------G 71 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-----------~ 71 (322)
||.||||+|.+|+.++..|...| +++..++++++.. ..+....|+.|. .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~-------------~~~g~~~Dl~d~~~~~~~~~~i~~ 68 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMK-------------ALEGVVMELQDCAFPLLKGVVITT 68 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccC-------------ccceeeeehhhhcccccCCcEEec
Confidence 79999999999999999999866 2588888865211 012222333322 2
Q ss_pred chHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 72 SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 72 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
...+.++++|+|||+||..... ..+..+.+..|+.-.+.+...+.+.. .-..+|.+|--.-+-. .......
T Consensus 69 ~~~~~~~~aDiVVitAG~~~~~-g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t-------~~~~k~s 140 (323)
T cd00704 69 DPEEAFKDVDVAILVGAFPRKP-GMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNA-------LIALKNA 140 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCc-CCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHH-------HHHHHHc
Confidence 4457888999999999975333 33457899999999999999999873 2334555543100000 0000001
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
....+. ...+.+....-++-..+++..++...-++-..|+|....
T Consensus 141 g~~p~~------~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 141 PNLPPK------NFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred CCCCHH------HEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 000010 112334555556666666666776666655567786543
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=76.51 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++++++|+||+|.+|+.+++.|.+.|++|++++|+..+.. .....+.. .........|..+.+++.++++++|+||+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~-~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQ-KAADSLRA-RFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHh-hcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 56789999999999999999999999999999988753321 11111110 11234556788888888889999999998
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+.+
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=76.47 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=99.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCcc-----------
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEG----------- 71 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----------- 71 (322)
+|.|+|++|.+|++++..|...|. ++..+++.+.... .+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~-------------a~g~~~Dl~d~~~~~~~~~~~~~ 67 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV-------------LEGVVMELMDCAFPLLDGVVPTH 67 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc-------------cceeEeehhcccchhcCceeccC
Confidence 589999999999999999998553 5888888654311 122233333332
Q ss_pred chHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCc-cEEEEecchhhhccCCCCCCCCccccCC
Q 020747 72 SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI-KRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 72 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
...+.++++|+|||+||..... ..++.+..+.|+.-.+.+.+.+.+..+. ..+|.+|--.-+- ....-+.
T Consensus 68 ~~~~~~~~aDiVVitAG~~~~~-~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~--------t~v~~~~ 138 (324)
T TIGR01758 68 DPAVAFTDVDVAILVGAFPRKE-GMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTN--------ALVLSNY 138 (324)
T ss_pred ChHHHhCCCCEEEEcCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH--------HHHHHHH
Confidence 3356788999999999975332 3345789999999999999999997323 3455555310000 0000000
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~ 202 (322)
+...|.. ..=+-+....-++-..++++.+++..-++-..|+|.....
T Consensus 139 sg~~~~~-----vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s 185 (324)
T TIGR01758 139 APSIPPK-----NFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSST 185 (324)
T ss_pred cCCCCcc-----eEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCCC
Confidence 0000000 0001122233355556666778888878777888875443
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-07 Score=81.47 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC
Q 020747 5 EGEEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68 (322)
Q Consensus 5 ~~~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (322)
.+++|+|+|||| +|.+|.+++++|.++|++|++++++.+.. . ... ....|++
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~-~---------~~~--~~~~dv~ 252 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP-T---------PAG--VKRIDVE 252 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc-C---------CCC--cEEEccC
Confidence 357899999999 99999999999999999999998764211 0 111 2457898
Q ss_pred CccchHHhh----CCCCEEEEcccCc
Q 020747 69 EEGSFDSAV----DGCDGVFHTASPV 90 (322)
Q Consensus 69 ~~~~~~~~~----~~~d~vih~A~~~ 90 (322)
+.+++.+.+ ..+|++||+||..
T Consensus 253 ~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 253 SAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred CHHHHHHHHHHhcCCCCEEEEccccc
Confidence 877766555 3689999999964
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-07 Score=81.33 Aligned_cols=96 Identities=29% Similarity=0.495 Sum_probs=68.4
Q ss_pred EEEECCcchhHHHHHHHHHHCC-C-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 11 VCVTGASGFVASWLVKLLLQRG-Y-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|.|| |++|+.+++.|++++ + +|++.+|+..+... ....+ ...+++.++.|+.|+++++++++++|+|||+++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEKL--LGDRVEAVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT----TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhhc--cccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 789999 999999999999987 4 89999998744311 11111 356899999999999999999999999999998
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
+.. ...++++|.+. |+ ++|-+|
T Consensus 77 p~~-----------------~~~v~~~~i~~-g~-~yvD~~ 98 (386)
T PF03435_consen 77 PFF-----------------GEPVARACIEA-GV-HYVDTS 98 (386)
T ss_dssp GGG-----------------HHHHHHHHHHH-T--EEEESS
T ss_pred cch-----------------hHHHHHHHHHh-CC-Ceeccc
Confidence 641 12677888876 54 556644
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-06 Score=65.82 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=74.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhcc----CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELD----GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|||.|+|++|.+|++++..|...+ .++..+++.+..... ...++. .......... .+++ .++++|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g-~a~Dl~~~~~~~~~~~~i~~---~~~~----~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEG-EALDLSHASAPLPSPVRITS---GDYE----ALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHH-HHHHHHHHHHGSTEEEEEEE---SSGG----GGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccccee-eehhhhhhhhhccccccccc---cccc----ccccccE
Confidence 489999999999999999999997 578889887543221 111111 1111222222 2333 5668899
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
||-+||..... .....+.++.|..-.+.+.+.+.+. +.+ .++.+|
T Consensus 73 vvitag~~~~~-g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvt 118 (141)
T PF00056_consen 73 VVITAGVPRKP-GMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVT 118 (141)
T ss_dssp EEETTSTSSST-TSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-S
T ss_pred EEEeccccccc-cccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeC
Confidence 99999975432 2345788899999999999999998 444 444444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5e-07 Score=79.69 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHC-C-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQR-G-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.+.+++|+||||+|+||+++|++|+++ | .+++++.|+..+. ..+.. ++..+|+. ++++++.++|+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl--~~La~--------el~~~~i~---~l~~~l~~aDi 218 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERL--QELQA--------ELGGGKIL---SLEEALPEADI 218 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHH--HHHHH--------HhccccHH---hHHHHHccCCE
Confidence 356799999999999999999999865 5 6888888865332 11111 11123433 46678889999
Q ss_pred EEEcccCc
Q 020747 83 VFHTASPV 90 (322)
Q Consensus 83 vih~A~~~ 90 (322)
|||+++..
T Consensus 219 Vv~~ts~~ 226 (340)
T PRK14982 219 VVWVASMP 226 (340)
T ss_pred EEECCcCC
Confidence 99999864
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=71.65 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+|||+||||. |+.|++.|.+.|++|++..++..... .+.. .....+..+..|.+++.++++ ++|+||++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~--~~~~-----~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDA 72 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKH--LYPI-----HQALTVHTGALDPQELREFLKRHSIDILVDA 72 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccc--cccc-----cCCceEEECCCCHHHHHHHHHhcCCCEEEEc
Confidence 47999999999 99999999999999999998775331 1111 112344566667777888886 58999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEE
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~ 127 (322)
+-++. ..-+.|..++|.+. ++..+=|
T Consensus 73 tHPfA--------------~~is~~a~~a~~~~-~ipylR~ 98 (256)
T TIGR00715 73 THPFA--------------AQITTNATAVCKEL-GIPYVRF 98 (256)
T ss_pred CCHHH--------------HHHHHHHHHHHHHh-CCcEEEE
Confidence 75432 13456888999987 7765444
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.8e-07 Score=75.07 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=44.2
Q ss_pred CcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-------CCCCEEEEccc
Q 020747 16 ASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-------DGCDGVFHTAS 88 (322)
Q Consensus 16 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~~~d~vih~A~ 88 (322)
++|+||++++++|+++|++|+++++.... .. .....+|+.+.+.+++++ ..+|++||+||
T Consensus 23 SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l------~~-------~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAg 89 (227)
T TIGR02114 23 STGHLGKIITETFLSAGHEVTLVTTKRAL------KP-------EPHPNLSIREIETTKDLLITLKELVQEHDILIHSMA 89 (227)
T ss_pred cccHHHHHHHHHHHHCCCEEEEEcChhhc------cc-------ccCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCE
Confidence 38999999999999999999988753210 00 011346888776665443 35899999999
Q ss_pred Cc
Q 020747 89 PV 90 (322)
Q Consensus 89 ~~ 90 (322)
..
T Consensus 90 v~ 91 (227)
T TIGR02114 90 VS 91 (227)
T ss_pred ec
Confidence 64
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=75.56 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=60.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCC--CcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPN--SPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+++++++|+|| |.+|++++..|++.|.+ |++++|+.. ....+..+++......+.....|+++.+++.+.++.+|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 45689999998 89999999999999986 999998752 111122222322223445667888888888888888999
Q ss_pred EEEcccC
Q 020747 83 VFHTASP 89 (322)
Q Consensus 83 vih~A~~ 89 (322)
|||+...
T Consensus 203 lINaTp~ 209 (289)
T PRK12548 203 LVNATLV 209 (289)
T ss_pred EEEeCCC
Confidence 9998643
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.5e-05 Score=70.63 Aligned_cols=204 Identities=22% Similarity=0.206 Sum_probs=130.7
Q ss_pred CCcEEEEECCc-chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc----CCCCcEEEEEccCCCccchHHhhC---
Q 020747 7 EEKVVCVTGAS-GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD----GATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 7 ~~~~ilVtGat-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
..+.++||||+ |-||.+++..|++.|..|++...+-+....+..+.+. ..+..+..+..++..+.+++++++
T Consensus 395 ~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg 474 (866)
T COG4982 395 GDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIG 474 (866)
T ss_pred ccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhc
Confidence 45889999986 8899999999999999999987666554444444332 224567888999999999988876
Q ss_pred ------------------CCCEEEEcccCcc--cCC--CCCcchhhhHHHHHHHHHHHHHhhcC---Cc---cEEEEecc
Q 020747 79 ------------------GCDGVFHTASPVI--FLS--DNPQADIVDPAVMGTLNVLRSCAKVH---SI---KRVVLTSS 130 (322)
Q Consensus 79 ------------------~~d~vih~A~~~~--~~~--~~~~~~~~~~N~~~~~~l~~~~~~~~---~~---~~~i~~SS 130 (322)
..|.+|-+|++.. ... ....+..+++=+....+++-.+++.. ++ -++|..+|
T Consensus 475 ~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgS 554 (866)
T COG4982 475 DEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGS 554 (866)
T ss_pred cccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCC
Confidence 1278888888632 211 11223455666666777776665541 12 24666666
Q ss_pred hh-hhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCCCCCCC
Q 020747 131 IG-AMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFFQPILN 205 (322)
Q Consensus 131 ~~-~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~~~~~~ 205 (322)
-. +.+|.+ ..|+.+|++.|.++..|+.+. .+.++-.+.|++-|.+.-....
T Consensus 555 PNrG~FGgD------------------------GaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~Nd 610 (866)
T COG4982 555 PNRGMFGGD------------------------GAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGHND 610 (866)
T ss_pred CCCCccCCC------------------------cchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCCcc
Confidence 41 112222 459999999999999998775 4566667788887776433212
Q ss_pred ccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC
Q 020747 206 FGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.+...+... +.+. -..++++..++.++..
T Consensus 611 ----iiv~aiEk~----GV~t-yS~~EmA~~LLgL~sa 639 (866)
T COG4982 611 ----IIVAAIEKA----GVRT-YSTDEMAFNLLGLASA 639 (866)
T ss_pred ----hhHHHHHHh----Ccee-cCHHHHHHHHHhhccH
Confidence 222222111 2222 2467777777777654
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=71.24 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=74.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCC--CCcChhhh--hh-ccCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDP--NSPKTEHL--RE-LDGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~--~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
|+|.|+|+||.+|++++..|+..|+ +|++++|.. ........ .. +........ +. .+ .+.+ .++++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~-i~--~~--~d~~-~l~~aD 74 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE-IK--IS--SDLS-DVAGSD 74 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE-EE--EC--CCHH-HhCCCC
Confidence 4899999999999999999999986 499999854 21111110 00 000011111 11 11 1233 488999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+||-++|..... ..+..+..+.|+.-...+++.+.+...-..+|.+++.
T Consensus 75 iViitag~p~~~-~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 75 IVIITAGVPRKE-GMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred EEEEecCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 999999864322 2233678889999999999998887333367777763
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=73.52 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=64.0
Q ss_pred EEEEECCcchhHHHHHHHHHH----CCCeEEEEEeCCCCcChhhhhhccC----CCCcEEEEEccCCCccchHHhhCCCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQ----RGYTVKATVRDPNSPKTEHLRELDG----ATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
.++|.||+||-|..+++++.+ +|...-+..|++.+.. +.+++... .-++..++.+|.+|++++.+..+.+.
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~-~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~ 85 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQ-EVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQAR 85 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHH-HHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhE
Confidence 689999999999999999999 6777777788765443 33333321 12334488999999999999999999
Q ss_pred EEEEcccCccc
Q 020747 82 GVFHTASPVIF 92 (322)
Q Consensus 82 ~vih~A~~~~~ 92 (322)
+|+||+|+...
T Consensus 86 vivN~vGPyR~ 96 (423)
T KOG2733|consen 86 VIVNCVGPYRF 96 (423)
T ss_pred EEEecccccee
Confidence 99999998643
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-05 Score=66.44 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhh--hhccCCCCcEEEEEccCCCccchHHh
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHL--RELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
||.. .++||.|+|+ |.+|++++..|+..|. ++..++++......... ........++..... + . +.
T Consensus 1 ~~~~--~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~---~---~-~~ 70 (315)
T PRK00066 1 MMKK--QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAG---D---Y-SD 70 (315)
T ss_pred CCCC--CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeC---C---H-HH
Confidence 5543 3479999997 9999999999999986 78999987654332111 111111122332221 2 2 24
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++++|+||-+||..... .....+..+.|..-.+.+++.+++...-..+|.+|-
T Consensus 71 ~~~adivIitag~~~k~-g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 71 CKDADLVVITAGAPQKP-GETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred hCCCCEEEEecCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 68999999999874332 234468899999999999999998732234555553
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00049 Score=53.21 Aligned_cols=186 Identities=16% Similarity=0.082 Sum_probs=104.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC--C-ccch----HHhhC--C
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL--E-EGSF----DSAVD--G 79 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~-~~~~----~~~~~--~ 79 (322)
.||+|-||-|-+|+++++.+..++|-|.-++..+.+... .-..+.+|-. + .+.+ .+.+. .
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad-----------~sI~V~~~~swtEQe~~v~~~vg~sL~gek 72 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD-----------SSILVDGNKSWTEQEQSVLEQVGSSLQGEK 72 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc-----------ceEEecCCcchhHHHHHHHHHHHHhhcccc
Confidence 689999999999999999999999999888877655432 1122233221 1 1111 11222 4
Q ss_pred CCEEEEcccCcccCCCC------CcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch-hhhccCCCCCCCCccccCCCC
Q 020747 80 CDGVFHTASPVIFLSDN------PQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI-GAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~------~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~-~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|.|++.||-+...... +.+.++.--+....--...+..+.+.+-++....+ .+..+.+.-
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPgM------------ 140 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPGM------------ 140 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCcc------------
Confidence 79999999865432222 22233333333333223333332233344444443 223322221
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc-Cc----cEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GI----DLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~----~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
--||.+|.+.+++.++++.+. |+ -+..+-|-+.-.|..+.-.+. . ..-+|
T Consensus 141 ----------IGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP~-----------A----DfssW 195 (236)
T KOG4022|consen 141 ----------IGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMPN-----------A----DFSSW 195 (236)
T ss_pred ----------cchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCCC-----------C----cccCc
Confidence 239999999999999998764 44 345556665555543321110 0 33445
Q ss_pred eeHHHHHHHHHHhhc
Q 020747 228 VEIRDVVYAHIRALE 242 (322)
Q Consensus 228 i~~~D~a~~~~~~~~ 242 (322)
....-+++.++.-..
T Consensus 196 TPL~fi~e~flkWtt 210 (236)
T KOG4022|consen 196 TPLSFISEHFLKWTT 210 (236)
T ss_pred ccHHHHHHHHHHHhc
Confidence 566777777766543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.9e-05 Score=64.77 Aligned_cols=178 Identities=17% Similarity=0.094 Sum_probs=101.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
|||.|+|++|.+|++++..|+.+| .++..++.+ ....+.+ .+....... .+.+ ....+++.+.++++|+||-+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~al-DL~~~~~~~-~i~~-~~~~~~~y~~~~daDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAA-DLSHINTPA-KVTG-YLGPEELKKALKGADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeeh-HhHhCCCcc-eEEE-ecCCCchHHhcCCCCEEEEe
Confidence 479999999999999999999888 478888876 2111111 111000111 1111 00112345678899999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhc-cCCCCCCCCccccCCCCCCcccccccchh
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAML-LNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~-~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
||..... .....+..+.|..-.+.+.+.+.+. +.+ .+|.+|--.-+- +--. ......... .+. ..
T Consensus 76 aG~~~k~-g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~~i~t----~~~~~~s~~-p~~------rv 142 (310)
T cd01337 76 AGVPRKP-GMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTVPIAA----EVLKKAGVY-DPK------RL 142 (310)
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHHHHHH----HHHHHhcCC-CHH------HE
Confidence 9975332 3345789999999999999999998 444 455555431000 0000 000000000 000 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCC-CCCCCC
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPF-FQPILN 205 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~-~~~~~~ 205 (322)
.|.+-.-.-++-..++++.|++..-++ +.|+|.. .....+
T Consensus 143 iG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeHsGds~vp 183 (310)
T cd01337 143 FGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGHSGVTILP 183 (310)
T ss_pred EeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecCCCCceec
Confidence 333334445666667777788777777 7888876 444333
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=72.53 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=70.2
Q ss_pred CCCCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC
Q 020747 5 EGEEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68 (322)
Q Consensus 5 ~~~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (322)
.+++++|+|||| ||.+|.+++++|..+|++|+.+.+...... ...+ ...|++
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~----------~~~~--~~~~v~ 249 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT----------PPGV--KSIKVS 249 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC----------CCCc--EEEEec
Confidence 367899999999 467999999999999999999886553211 1112 457888
Q ss_pred Cccch-HHhh----CCCCEEEEcccCcccCCC---C---Cc-chhhhHHHHHHHHHHHHHhhc
Q 020747 69 EEGSF-DSAV----DGCDGVFHTASPVIFLSD---N---PQ-ADIVDPAVMGTLNVLRSCAKV 119 (322)
Q Consensus 69 ~~~~~-~~~~----~~~d~vih~A~~~~~~~~---~---~~-~~~~~~N~~~~~~l~~~~~~~ 119 (322)
+.+++ ++++ .++|++||+||....... . .. ...+.+|+.-+..++..+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~ 312 (390)
T TIGR00521 250 TAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKI 312 (390)
T ss_pred cHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhh
Confidence 87776 5444 368999999997432110 0 00 123346677777777777764
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.9e-05 Score=63.31 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=57.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
|+++|.| .|-+|+.+|+.|.++||+|+++++++... ++..........+.+|-+|++.++++ ++++|++|=.
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~-----~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERV-----EEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHH-----HHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 4788888 89999999999999999999999987443 22111123478899999999999988 7789999844
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=63.71 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=75.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhc---c-CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLREL---D-GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
++|.|+|+ |.+|+.++..|+..| ++|.+++|+...... ....+ . .......... .++ + .++++|+
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~-~a~dL~~~~~~~~~~~~i~~---~~~---~-~l~~aDI 71 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEG-EALDLEDALAFLPSPVKIKA---GDY---S-DCKDADI 71 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhH-hHhhHHHHhhccCCCeEEEc---CCH---H-HhCCCCE
Confidence 47999995 999999999999999 689999997655322 11111 0 0011222221 122 2 4679999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||+++|..... ..+..+..+.|..-.+.+.+.+++...-..+|.+|-
T Consensus 72 VIitag~~~~~-g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 72 VVITAGAPQKP-GETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred EEEccCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 99999875333 234468889999999999999999733335555554
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.6e-05 Score=65.98 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=101.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCC--cChhhh--hhcc-CCCCcEEEEEccCCCccchHHh
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNS--PKTEHL--RELD-GATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~--~~~~-~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
.||.|+|++|++|++++..|...|. ++..+++.+.. .....+ .... .....+.. . ....+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~------~~~~~~ 76 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-T------TDPEEA 76 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-e------cChHHH
Confidence 5899999999999999999998884 78888886422 211111 1000 00111111 1 122456
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccE-EEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR-VVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
++++|+||.+||..... ..+..+.+..|+.-.+.+.+.+.+...... +|.+|-- . +-. ....-+.++..|
T Consensus 77 ~~daDvVVitAG~~~k~-g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP-v----Dv~---t~v~~k~s~g~p 147 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKP-GMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP-A----NTN---ALIASKNAPDIP 147 (323)
T ss_pred hCCCCEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc-H----HHH---HHHHHHHcCCCC
Confidence 78999999999974332 344578999999999999999999833144 4444421 1 000 000001110001
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
. ....|.+.+..-++-..++++.+++..-++-..|+|....
T Consensus 148 ~-----~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 148 P-----KNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred H-----HHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 0 0123335555566666777777888887877778887544
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00016 Score=63.61 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=74.6
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
||.|+|++|.+|++++..|..++. ++..+++.+ ... ..+ .+............. +.+++.+.++++|+||-+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g-~a~-DL~~~~~~~~i~~~~--~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAG-VAA-DLSHIPTAASVKGFS--GEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcE-EEc-hhhcCCcCceEEEec--CCCchHHHcCCCCEEEEeC
Confidence 589999999999999999999884 788888866 211 111 111000111111101 1123456888999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecc
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSS 130 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS 130 (322)
|..... .....+....|+.-.+.+.+.+.+. +.+ .+|.+|-
T Consensus 76 G~~~~~-g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsN 117 (312)
T TIGR01772 76 GVPRKP-GMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITN 117 (312)
T ss_pred CCCCCC-CccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 975332 2344688999999999999999987 444 4555554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=63.77 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=100.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCC--cChhhh--hhcc-CCCCcEEEEEccCCCccchHH
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNS--PKTEHL--RELD-GATERLHLFKANLLEEGSFDS 75 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~--~~~~-~~~~~~~~~~~Dl~~~~~~~~ 75 (322)
.+||.|+|++|.+|+.++..|...|. ++..+++.+.. .....+ .... ....++... . ...+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~------~~y~ 76 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D------DPNV 76 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c------ChHH
Confidence 36999999999999999999998763 68888885432 111111 1100 001112211 1 2235
Q ss_pred hhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 76 AVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 76 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
.++++|+||-+||..... ..+..+.++.|+.-.+.+.+.+.+..+ -..+|.+|--.-+- ....-+.++.-
T Consensus 77 ~~~daDiVVitaG~~~k~-g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~--------t~v~~k~s~g~ 147 (326)
T PRK05442 77 AFKDADVALLVGARPRGP-GMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTN--------ALIAMKNAPDL 147 (326)
T ss_pred HhCCCCEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHH--------HHHHHHHcCCC
Confidence 677899999999964332 334578899999999999999999533 33555555321000 00000001000
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
|. . ...|.+-+..-++-..+++..+++..-++...|+|....
T Consensus 148 p~---~--rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 148 PA---E--NFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred CH---H--HEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 10 0 123334455556666777777887777776677786543
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.7e-05 Score=51.74 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=28.1
Q ss_pred cCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 281 EKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 281 ~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
..+......|++|+ ++|||+| ++++++|+++++|++.++.
T Consensus 19 ~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 19 PGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred CCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 56778899999999 9999999 9999999999999998764
|
... |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.9e-05 Score=61.48 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=46.4
Q ss_pred CCCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCC
Q 020747 6 GEEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69 (322)
Q Consensus 6 ~~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (322)
+++|+||||+| ||-.|.+|++++..+|++|+.+....+-. . ...+..+..+=.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~-~---------p~~~~~i~v~sa~ 70 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP-P---------PPGVKVIRVESAE 70 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--------------TTEEEEE-SSHH
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc-c---------cccceEEEecchh
Confidence 35789999986 79999999999999999999887763211 0 2345555543221
Q ss_pred --ccchHHhhCCCCEEEEcccCcc
Q 020747 70 --EGSFDSAVDGCDGVFHTASPVI 91 (322)
Q Consensus 70 --~~~~~~~~~~~d~vih~A~~~~ 91 (322)
.+.+.+.++++|++||+||+..
T Consensus 71 em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 71 EMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp HHHHHHHHHGGGGSEEEE-SB--S
T ss_pred hhhhhhccccCcceeEEEecchhh
Confidence 1234455567899999999753
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=63.04 Aligned_cols=118 Identities=20% Similarity=0.170 Sum_probs=76.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+.++|.|+|| |.+|+.++..|+..| .++..+++++.......+ .+.. ..........+....+.+ .++++|+||.
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~l-Dl~~-~~~~~~~~~~i~~~~d~~-~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKAL-DLKH-FSTLVGSNINILGTNNYE-DIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHH-HHhh-hccccCCCeEEEeCCCHH-HhCCCCEEEE
Confidence 4579999996 999999999999998 688888987654322111 0100 000000001111112344 6689999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecc
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSS 130 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS 130 (322)
+||..... .....+....|..-.+.+++.+.+. +.+ .+|.+|-
T Consensus 80 tag~~~~~-g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsN 123 (319)
T PTZ00117 80 TAGVQRKE-EMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTN 123 (319)
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 99864332 2234678889999999999999887 444 4666654
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=7e-05 Score=69.91 Aligned_cols=76 Identities=26% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++|+|+|+|+++ +|..+++.|++.|++|++.++.......+...++.. ..+.++.+|..+ ....++|+||+
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~--~~~~~~~~~~~~-----~~~~~~d~vv~ 74 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE--LGIELVLGEYPE-----EFLEGVDLVVV 74 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--cCCEEEeCCcch-----hHhhcCCEEEE
Confidence 5679999999888 999999999999999999988643221122222221 235677788765 24567899999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
++|.
T Consensus 75 ~~g~ 78 (450)
T PRK14106 75 SPGV 78 (450)
T ss_pred CCCC
Confidence 9985
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.7e-05 Score=74.55 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=115.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcChhhh--hhccCCCCcEEEEEccCCCccchHHhhCC----
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHL--RELDGATERLHLFKANLLEEGSFDSAVDG---- 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---- 79 (322)
..|..+|+||-|..|-+|+..|.++|.+ ++..+|+.-+...+.+ +.-...+.++..-..|++..+.-+.+++.
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence 3588999999999999999999999976 5556676555544322 11122355677777888877777777763
Q ss_pred --CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 --CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 --~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+-.|+|+|+...+ ....++.+.-+.-+.||+|+=+.-++.+ -.+.||.+||...=.|+...
T Consensus 1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~GQ----------- 1915 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAGQ----------- 1915 (2376)
T ss_pred ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCcc-----------
Confidence 4789999986543 3344455566667889999988888863 25789999998332233221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGT 194 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~ 194 (322)
+-||.+-.++|+++++-. ..|++-+.+--|.
T Consensus 1916 -----------tNYG~aNS~MERiceqRr-~~GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1916 -----------TNYGLANSAMERICEQRR-HEGFPGTAIQWGA 1946 (2376)
T ss_pred -----------cccchhhHHHHHHHHHhh-hcCCCcceeeeec
Confidence 339999999999997654 4477777665443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00056 Score=59.59 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=74.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhcc----CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELD----GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+||.|+|+ |+||+.++-.|+.++ .++.++++.+....... ..+. ..... ..+.+| .+ -+.++++|+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a-~DL~~~~~~~~~~-~~i~~~-~~----y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVA-LDLSHAAAPLGSD-VKITGD-GD----YEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchh-cchhhcchhccCc-eEEecC-CC----hhhhcCCCE
Confidence 47999999 999999999998876 47889998844332211 1111 00111 222333 22 235678999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|+-.||...... ....++++.|..-...+.+.+.+. +.+.++.+-|
T Consensus 73 VvitAG~prKpG-mtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvt 118 (313)
T COG0039 73 VVITAGVPRKPG-MTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVT 118 (313)
T ss_pred EEEeCCCCCCCC-CCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEec
Confidence 999998653322 334688999999999999999997 5455555544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=53.03 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++++|++.| +| .|.+++..|.+.|++|++++.++... +... ...++.+.+|+.++. -++-+++|.|+-+
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV-----~~a~--~~~~~~v~dDlf~p~--~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAV-----EKAK--KLGLNAFVDDLFNPN--LEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHH-----HHHH--HhCCeEEECcCCCCC--HHHHhcCCEEEEe
Confidence 357899999 66 89999999999999999999887532 1111 124688999999876 3456688998844
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
.++.+++. .+++.+++. ++.-+|..=
T Consensus 85 ---------rpp~el~~-------~~~~la~~~-~~~~~i~~l 110 (134)
T PRK04148 85 ---------RPPRDLQP-------FILELAKKI-NVPLIIKPL 110 (134)
T ss_pred ---------CCCHHHHH-------HHHHHHHHc-CCCEEEEcC
Confidence 22334433 678888887 766555443
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.001 Score=58.45 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=97.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhh--hhccC-CC-CcEEEEEccCCCccchHHhhCCCCEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHL--RELDG-AT-ERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~--~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
||.|+|+ |++|+.++..|+.+|. ++..++..+.......+ ..... .. .+++...+| .+.++++|+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCEE
Confidence 5889997 9999999999999884 78888886654332211 11111 11 134444333 2467789999
Q ss_pred EEcccCcccCCCCC-cchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhh----hccCCCCCCCCccccCCCCCCcccc
Q 020747 84 FHTASPVIFLSDNP-QADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGA----MLLNETPMTPDVVIDETWFSNPVLC 158 (322)
Q Consensus 84 ih~A~~~~~~~~~~-~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~----~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (322)
|-.||........+ ..+++..|+.-.+.+.+.+.+. +...++.+-|--. +.-... ...+..
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv~t~~~~k~----------sg~p~~--- 138 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDIAVYIAATE----------FDYPAN--- 138 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHHHHHHHHHH----------hCcChh---
Confidence 99999743322221 3688899999999999999998 5555544444201 110000 000000
Q ss_pred cccchhHHH-HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 159 KENKEWYSL-AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 159 ~~~~~~Y~~-sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
-..|. +-+-.-++-..++++.+++..-++.. |+|....
T Consensus 139 ----rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 139 ----KVIGTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred ----heecccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 01222 23333455556666678887777765 8886643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=61.87 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=73.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+||.|+|+ |.+|+.++..|+..|. +|+++++++........ .+... .........++...+.+ .++++|+||.++
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~-dl~~~-~~~~~~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKAL-DIAEA-APVEGFDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHH-HHHhh-hhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence 68999998 9999999999999875 99999986654322111 11000 00000011111112233 468999999998
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+..... .....+....|+.-...+++.+.+......+|.+|-
T Consensus 79 ~~p~~~-~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 79 GVPRKP-GMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 754322 223356777899999999999988733334666653
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=64.18 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=101.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-------CC--eEEEEEeCCCCcChhhhhhcc---CCCCcEEEEEccCCCccchHHh
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-------GY--TVKATVRDPNSPKTEHLRELD---GATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
-+|.|+|++|.+|++++..|+.. |. +++.+++..+......+.-.. ....++.+..+ + .+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~---~----ye~ 173 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID---P----YEV 173 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC---C----HHH
Confidence 58999999999999999999988 64 788888877654432221110 11112221111 2 246
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhh-cCCccEEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAK-VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~-~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
++++|+||-.||..... .....+..+.|+.-.+.+.+.+.+ ...-..+|.+|--.-+- ....-+.+...+
T Consensus 174 ~kdaDiVVitAG~prkp-G~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~--------t~v~~k~sg~~~ 244 (444)
T PLN00112 174 FQDAEWALLIGAKPRGP-GMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTN--------ALICLKNAPNIP 244 (444)
T ss_pred hCcCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHH--------HHHHHHHcCCCC
Confidence 77899999999974332 334578999999999999999999 52333555555321000 000000000000
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCC
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~ 202 (322)
. . ..=.-+.+..-++-..++++.+++..-|+-..|+|.....
T Consensus 245 ~---r--ViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGds 286 (444)
T PLN00112 245 A---K--NFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTT 286 (444)
T ss_pred c---c--eEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCc
Confidence 0 0 0011222333455566666778888888888888875443
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=7.6e-05 Score=64.30 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=57.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
...++|-|||||.|.-++++|.++|.+-.+-.|+..+. ..+... .+..+..+ ++-+++.+++..++.++|+||+
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl--~~l~~~--LG~~~~~~--p~~~p~~~~~~~~~~~VVlncv 79 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKL--DALRAS--LGPEAAVF--PLGVPAALEAMASRTQVVLNCV 79 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHH--HHHHHh--cCcccccc--CCCCHHHHHHHHhcceEEEecc
Confidence 35799999999999999999999998876666765332 112111 12333333 3334888999999999999999
Q ss_pred cCccc
Q 020747 88 SPVIF 92 (322)
Q Consensus 88 ~~~~~ 92 (322)
|++..
T Consensus 80 GPyt~ 84 (382)
T COG3268 80 GPYTR 84 (382)
T ss_pred ccccc
Confidence 98643
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00034 Score=60.38 Aligned_cols=115 Identities=18% Similarity=0.048 Sum_probs=74.5
Q ss_pred EEEECCcchhHHHHHHHHHHCC----CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 11 VCVTGASGFVASWLVKLLLQRG----YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
|.|+||+|.+|+.++..|+..| .+|..+|+++..... ....+..... .. ....+.-..++.+.++++|+||..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~-~~~dl~~~~~-~~-~~~~i~~~~d~~~~~~~aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKG-VAMDLQDAVE-PL-ADIKVSITDDPYEAFKDADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchH-HHHHHHHhhh-hc-cCcEEEECCchHHHhCCCCEEEEC
Confidence 5789999999999999999998 789999987754332 1111110000 00 011222123456678899999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
++........ .......|+.-.+.+.+.+.+...-..+|.+|
T Consensus 78 ~~~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 78 AGVGRKPGMG-RLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9865432222 34677889999999999999873333455554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0019 Score=57.29 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhc---cCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLREL---DGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+.+||.|+| +|.+|+.++..|+..|. +|+.+++++.....+.+... ........+... +| .+ .++++|+
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d---~~-~l~~aDi 77 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NN---YE-DIAGSDV 77 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CC---HH-HhCCCCE
Confidence 457999999 69999999999999995 88888987765322111111 111111222210 12 32 5689999
Q ss_pred EEEcccCcccCCC----CCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecch
Q 020747 83 VFHTASPVIFLSD----NPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSI 131 (322)
Q Consensus 83 vih~A~~~~~~~~----~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~ 131 (322)
||.+|+....... -+..+....|+.-.+.+++.+.+. +.+ .+|.+|-.
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~sNP 130 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVITNP 130 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 9999986432111 134567788999999999999887 444 67766653
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00078 Score=59.43 Aligned_cols=114 Identities=15% Similarity=0.086 Sum_probs=74.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhh--hhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHL--RELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+||.|+|+ |.+|+.++..|+..| .++.+++++........+ ............... .| .+ .++++|+||
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~d---y~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KD---YS-VTANSKVVI 76 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CC---HH-HhCCCCEEE
Confidence 58999995 999999999999887 468888887643322111 111100111122211 12 23 368999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-+||..... .....+.++.|+.-.+.+.+.+++......+|.+|-
T Consensus 77 itaG~~~k~-g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 77 VTAGARQNE-GESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred ECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 999865432 234468889999999999999999833345666664
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00032 Score=52.81 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=27.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPN 43 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~ 43 (322)
||.|+||||++|++|++.|.+.. +++..+..+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 68999999999999999999964 56655544443
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=55.84 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=52.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.+++++++|.|+ |..|+.++..|.+.|.+ |+++.|+..+. +.+.+.. ....+..+.. +++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra--~~l~~~~-~~~~~~~~~~-----~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERA--EALAEEF-GGVNIEAIPL-----EDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHH--HHHHHHH-TGCSEEEEEG-----GGHCHHHHTESEE
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHH--HHHHHHc-CccccceeeH-----HHHHHHHhhCCeE
Confidence 356799999995 88999999999999976 99999876443 2222211 1223444433 4455677889999
Q ss_pred EEcccC
Q 020747 84 FHTASP 89 (322)
Q Consensus 84 ih~A~~ 89 (322)
|++.+.
T Consensus 80 I~aT~~ 85 (135)
T PF01488_consen 80 INATPS 85 (135)
T ss_dssp EE-SST
T ss_pred EEecCC
Confidence 998754
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00062 Score=59.92 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=73.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|+|+ |++|+.++..|+..|+ +|+++++.+.......+ .+.. ..........++-..+++. ++++|+||-+|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~-d~~~-~~~~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKAL-DMYE-ASPVGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHH-hhhh-hhhccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 58999995 9999999999999886 89999986543221111 1100 0000000111211123333 67899999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|..... ..+..+....|+.-...+++.+.+...-..+|.+|-
T Consensus 78 g~p~~~-~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 78 GLPRKP-GMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 864322 233457888999999999999988733335666554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00096 Score=50.44 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=54.8
Q ss_pred cEEEEECCcchhHHHHHHHHHH-CCCeEEE-EEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQ-RGYTVKA-TVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
|||.|.|++|-.|+.+++.+.+ .++++.+ ++|++++...+...++.... ...+.-.++++++++.+|+||.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~------~~~~~v~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG------PLGVPVTDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS------T-SSBEBS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC------CcccccchhHHHhcccCCEEEEc
Confidence 4899999999999999999999 6788654 45555222211111111110 11222235778888889999987
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCc
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~ 122 (322)
. +-..+...++.|.+. ++
T Consensus 75 T-----------------~p~~~~~~~~~~~~~-g~ 92 (124)
T PF01113_consen 75 T-----------------NPDAVYDNLEYALKH-GV 92 (124)
T ss_dssp S------------------HHHHHHHHHHHHHH-T-
T ss_pred C-----------------ChHHhHHHHHHHHhC-CC
Confidence 5 123455677777776 54
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=56.92 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=72.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
|+|.|+|+ |.+|+.++..|+.+| .+|.+++++......+. +..............+ + . +.++++|+||
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~---d---~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG---D---Y-ADCKGADVVV 72 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC---C---H-HHhCCCCEEE
Confidence 37999996 999999999999999 68999998765432111 1111100111222211 2 2 3478999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
.+++..... ..+..+....|+.-...+++.+.+...-..++.++
T Consensus 73 ita~~~~~~-~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQKP-GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EccCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999864332 33445778889999999999998873223444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=64.73 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=63.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 85 (322)
.++|.|.||||++|++|++.|.++ +++|..+.+..+.. +.+.... .....+|+.+.++++.. ++++|+||-
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG--~~i~~~~-----~~l~~~~~~~~~~~~~~~~~~~DvVf~ 110 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG--QSFGSVF-----PHLITQDLPNLVAVKDADFSDVDAVFC 110 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC--CCchhhC-----ccccCccccceecCCHHHhcCCCEEEE
Confidence 469999999999999999999998 57888888754332 1111110 11223455444444432 578999986
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhh
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGA 133 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~ 133 (322)
+.+- ..+..++..+ +. + .++|-.||..-
T Consensus 111 Alp~-----------------~~s~~i~~~~-~~-g-~~VIDlSs~fR 138 (381)
T PLN02968 111 CLPH-----------------GTTQEIIKAL-PK-D-LKIVDLSADFR 138 (381)
T ss_pred cCCH-----------------HHHHHHHHHH-hC-C-CEEEEcCchhc
Confidence 5421 1345666665 33 4 58999998743
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=61.10 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=99.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHC---C--Ce--EEEEEeCCCCcCh-hhhhhcc----CCCCcEEEEEccCCCccchHHh
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR---G--YT--VKATVRDPNSPKT-EHLRELD----GATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~---g--~~--V~~~~r~~~~~~~-~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
-+|+||||+|.||.+|+-.+++- | .. +..++..+..... ....++. .....+... . .-...
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~------~~~ea 196 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-T------DLDVA 196 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-E------CCHHH
Confidence 58999999999999999999873 4 23 3444542111111 1111111 111122222 1 12457
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCc--cEEEEecchh----hhccCCCCCCCCccccCC
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI--KRVVLTSSIG----AMLLNETPMTPDVVIDET 150 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~--~~~i~~SS~~----~~~~~~~~~~~~~~~~E~ 150 (322)
++++|+||-.||..... .....+..+.|..-.+.+.+++.+. .. .+++.+.|-- ++.-.. .
T Consensus 197 ~~daDvvIitag~prk~-G~~R~DLL~~N~~Ifk~~g~~I~~~-a~~~~~VlVv~tNPvD~~t~i~~k-----------~ 263 (452)
T cd05295 197 FKDAHVIVLLDDFLIKE-GEDLEGCIRSRVAICQLYGPLIEKN-AKEDVKVIVAGRTFLNLKTSILIK-----------Y 263 (452)
T ss_pred hCCCCEEEECCCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCeEEEEeCCcHHHHHHHHHH-----------H
Confidence 88999999999865332 2345688999999999999999887 43 4666666520 111000 0
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~ 202 (322)
+|.-|. . ...|.+.....++...++++.+++..-|+-..|+|.....
T Consensus 264 apgiP~---~--rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~s 310 (452)
T cd05295 264 APSIPR---K--NIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGN 310 (452)
T ss_pred cCCCCH---H--HEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCc
Confidence 000010 0 2233444445577777777888888888888888875443
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0021 Score=57.58 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=74.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhh--hhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHL--RELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+||.|+|+ |.+|++++..|+..|. ++..++..+.......+ .......... .+.++ .+ . +.++++|+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~~-~d---y-~~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILAS-TD---Y-AVTAGSDLCI 110 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEeC-CC---H-HHhCCCCEEE
Confidence 59999995 9999999999998873 78888886644322111 1111111112 22221 12 2 2478999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-+||..... ..+..+....|+.-.+.+.+.+.+...-..+|.+|-
T Consensus 111 itAG~~~k~-g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 111 VTAGARQIP-GESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred ECCCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999975332 233468889999999999999998733335555553
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00027 Score=65.97 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=57.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~A 87 (322)
|+|+|+|+ |.+|+++++.|.+.|++|+++++++... +.+.. ...+..+.+|.+++..++++ ++++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~-----~~~~~-~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERL-----RRLQD-RLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHH-----HHHHh-hcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 47999996 9999999999999999999998876432 22211 13478899999999888888 78899988654
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00027 Score=63.10 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=44.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCe---EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYT---VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++|+|.||||++|++|++.|.++||. +.++.+..+.... +. +. + ......|+.+. .++++|+||-
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~--l~-~~--g--~~i~v~d~~~~-----~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE--LS-FK--G--KELKVEDLTTF-----DFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe--ee-eC--C--ceeEEeeCCHH-----HHcCCCEEEE
Confidence 68999999999999999999998864 4777665433211 11 11 1 23334455431 2368999997
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+++
T Consensus 70 A~g 72 (334)
T PRK14874 70 SAG 72 (334)
T ss_pred CCC
Confidence 664
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00045 Score=69.60 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=56.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-Ce-------------EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YT-------------VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (322)
++++|+|.|+ |++|+..++.|.+.+ ++ |.+.+++.... +.+....++++.++.|++|.++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-----~~la~~~~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-----KETVEGIENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-----HHHHHhcCCCceEEeecCCHHH
Confidence 3689999995 999999999999763 33 55556554222 1121112356789999999999
Q ss_pred hHHhhCCCCEEEEcccC
Q 020747 73 FDSAVDGCDGVFHTASP 89 (322)
Q Consensus 73 ~~~~~~~~d~vih~A~~ 89 (322)
+.++++++|+||++...
T Consensus 642 L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 642 LLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHhhcCCCEEEECCCc
Confidence 99999999999998753
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00092 Score=49.80 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=51.3
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEcc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHTA 87 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~A 87 (322)
|+|.| .|-+|..+++.|.+.+.+|+++++++... +.+.. ..+..+.||.++++.++++ +++++.||-+.
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~-----~~~~~--~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERV-----EELRE--EGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHH-----HHHHH--TTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHH-----HHHHh--cccccccccchhhhHHhhcCccccCEEEEcc
Confidence 57888 57899999999999777999999876332 22221 2378999999999988876 56789888554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=56.46 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=43.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|++.| ||+|.||+.|+++|.+.||+|++..|+.++........+. +. -...+.+.+.+.+|+||-
T Consensus 2 ~~~~i-~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---~~--------i~~~~~~dA~~~aDVVvL 66 (211)
T COG2085 2 MIIAI-IGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---PL--------ITGGSNEDAAALADVVVL 66 (211)
T ss_pred cEEEE-eccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc---cc--------cccCChHHHHhcCCEEEE
Confidence 45665 5599999999999999999999887766553322222221 11 122345567788999983
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00089 Score=56.43 Aligned_cols=115 Identities=17% Similarity=0.052 Sum_probs=71.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeE---EEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTV---KATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+-+|.|.||+|.||+-|...|..+ ..| ...+....+... ..+.. -+-.......+-++.++++++++|+||
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~~GVa---aDlSH--I~T~s~V~g~~g~~~L~~al~~advVv 101 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANTPGVA---ADLSH--INTNSSVVGFTGADGLENALKGADVVV 101 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcC-cccceeeeeecccCCccc---ccccc--cCCCCceeccCChhHHHHHhcCCCEEE
Confidence 468999999999999997665544 332 222222211100 00000 000111223334468999999999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
--||..... .-..++++++|..-...+..++.+.+....+.++|
T Consensus 102 IPAGVPRKP-GMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 102 IPAGVPRKP-GMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred ecCCCCCCC-CCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 999975432 22235799999999999999999984333444444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=62.04 Aligned_cols=73 Identities=26% Similarity=0.431 Sum_probs=56.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.++|+|.|+ |.+|+++++.|.+.|++|+++++++... ..+......+..+.||.++++.++++ ++++|.||-+
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~-----~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERA-----EELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-----HHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 578999996 9999999999999999999998876432 22221123467899999999888644 5688998844
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00083 Score=60.40 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=30.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 44 (322)
++|+|+||||++|++|++.|.+... ++.++.++.+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~ 40 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERS 40 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhh
Confidence 7999999999999999999998764 88877565433
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.002 Score=58.17 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=95.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-e----EEE--E--EeCCCCcChhhhhh--cc-CCCCcEEEEEccCCCccchHHh
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-T----VKA--T--VRDPNSPKTEHLRE--LD-GATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~----V~~--~--~r~~~~~~~~~~~~--~~-~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
-||.|+|++|.+|++++..|+..|. . |.+ + ++..+......+.- .. ....++....+ + .+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~---~----y~~ 117 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID---P----YEV 117 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC---C----HHH
Confidence 5899999999999999999998873 2 333 2 54444332211110 00 11112221111 2 346
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchh---h-hccCCCCCCCCccccCCC
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIG---A-MLLNETPMTPDVVIDETW 151 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~---~-~~~~~~~~~~~~~~~E~~ 151 (322)
++++|+||-+||..... .....+.++.|+.-.+.+.+.+.+..+.. .+|.+|--. . +........++..+
T Consensus 118 ~kdaDIVVitAG~prkp-g~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rvi---- 192 (387)
T TIGR01757 118 FEDADWALLIGAKPRGP-GMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNF---- 192 (387)
T ss_pred hCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEE----
Confidence 78999999999965332 33457899999999999999999953344 455555321 0 10000000001111
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
=+-+.+-.-++-..++++.+++..-++-+.|+|....
T Consensus 193 -------------G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 193 -------------HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred -------------EecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 1222333345556666666777777766777886543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00039 Score=61.84 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=54.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEE--EEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKA--TVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++|.|+||||++|++|++.|.+++|.+.. ..++.+... +.+. .. + ...++.+.+.. . ++++|+||-
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG-~~l~-~~--~-----~~l~~~~~~~~-~-~~~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAG-HSVP-FA--G-----KNLRVREVDSF-D-FSQVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCC-Ceec-cC--C-----cceEEeeCChH-H-hcCCCEEEE
Confidence 379999999999999999999987764332 223322221 1111 10 1 12333333322 2 478999986
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhh
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGA 133 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~ 133 (322)
+++. . -...++..+.+. |+ ++|=.||..-
T Consensus 73 a~p~----------~-------~s~~~v~~~~~~-G~-~VIDlS~~fR 101 (336)
T PRK05671 73 AAGA----------A-------VSRSFAEKARAA-GC-SVIDLSGALP 101 (336)
T ss_pred cCCH----------H-------HHHHHHHHHHHC-CC-eEEECchhhc
Confidence 5521 0 012366666665 64 5777777643
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=58.24 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-----------------------hhhhhccCCCCcEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-----------------------EHLRELDGATERLHL 62 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------------~~~~~~~~~~~~~~~ 62 (322)
+.++|+|.| .|.+|+++++.|+..|. +++++|++.-+.++ +.+.++.. ..+++.
T Consensus 23 ~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp-~v~i~~ 100 (338)
T PRK12475 23 REKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS-EVEIVP 100 (338)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC-CcEEEE
Confidence 458999999 57799999999999997 78888886421111 11111111 335666
Q ss_pred EEccCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 63 FKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 63 ~~~Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+..|++ ++.++++++++|+||.+. ++ ...-..+-+.|.+. ++ .+|+.+..
T Consensus 101 ~~~~~~-~~~~~~~~~~~DlVid~~--------D~--------~~~r~~in~~~~~~-~i-p~i~~~~~ 150 (338)
T PRK12475 101 VVTDVT-VEELEELVKEVDLIIDAT--------DN--------FDTRLLINDLSQKY-NI-PWIYGGCV 150 (338)
T ss_pred EeccCC-HHHHHHHhcCCCEEEEcC--------CC--------HHHHHHHHHHHHHc-CC-CEEEEEec
Confidence 777875 356788899999999774 11 11112345666665 54 46776655
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=58.39 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-----------------------hhhhhccCCCCcEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-----------------------EHLRELDGATERLHL 62 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------------~~~~~~~~~~~~~~~ 62 (322)
+.++|+|.| .|.+|+++++.|+..|. ++++++++.-+..+ +.+.+++. .-+++.
T Consensus 23 ~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp-~v~v~~ 100 (339)
T PRK07688 23 REKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS-DVRVEA 100 (339)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC-CcEEEE
Confidence 457999999 59999999999999997 78889886311110 11111111 234566
Q ss_pred EEccCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc
Q 020747 63 FKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL 136 (322)
Q Consensus 63 ~~~Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~ 136 (322)
+..+++. +.+..++++.|+||.+. ++ ...-..+.++|.+. + ..+|+.|+. +.+|
T Consensus 101 ~~~~~~~-~~~~~~~~~~DlVid~~--------Dn--------~~~r~~ln~~~~~~-~-iP~i~~~~~-g~~G 154 (339)
T PRK07688 101 IVQDVTA-EELEELVTGVDLIIDAT--------DN--------FETRFIVNDAAQKY-G-IPWIYGACV-GSYG 154 (339)
T ss_pred EeccCCH-HHHHHHHcCCCEEEEcC--------CC--------HHHHHHHHHHHHHh-C-CCEEEEeee-eeee
Confidence 6677754 55677889999999774 11 22233566778776 5 457787766 4433
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00053 Score=60.64 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++|.|+| +|.+|+.++..|+++|++|++.+|++.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999 999999999999999999999999864
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0043 Score=54.56 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=72.5
Q ss_pred EEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 11 VCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
|.|.|+ |++|+.++..|+..| .++++++++.+...... +..............+ .| ...++++|+||.+
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADADIVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCCCEEEEc
Confidence 467885 889999999999998 68999998765432211 1111111111122211 12 2377899999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||..... ..+..+....|+.-.+.+.+.+++...-..+|.+|-
T Consensus 74 ag~p~~~-~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRKP-GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 9864332 234467888999999999999998733335555553
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0022 Score=52.96 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=67.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hh---------------hhhccCCC--CcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EH---------------LRELDGAT--ERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~---------------~~~~~~~~--~~~~~~~~ 65 (322)
+.++|+|.| .|.+|+++++.|...|. +++++|.+.-+... +. .+.+.... .+++.+..
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 457999999 89999999999999996 78888876321111 00 01111112 23444444
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL 136 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~ 136 (322)
++. ++.+.++++++|+||.+.. + ...-..+.+.|++. + ..+|+.++. +.+|
T Consensus 99 ~i~-~~~~~~~~~~~D~Vi~~~d--------~--------~~~r~~l~~~~~~~-~-ip~i~~~~~-g~~G 149 (202)
T TIGR02356 99 RVT-AENLELLINNVDLVLDCTD--------N--------FATRYLINDACVAL-G-TPLISAAVV-GFGG 149 (202)
T ss_pred cCC-HHHHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-C-CCEEEEEec-cCeE
Confidence 553 3456778899999997742 1 11223466777776 5 467787765 4443
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00078 Score=60.35 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEE-EccCCCccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLF-KANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|+|+||||++|+++++.|.+. ++++.++.++.+.. +.+.+.. +.+..+ ..++.+.+.. ..+++|+||-+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g--~~l~~~~---~~~~~~~~~~~~~~~~~--~~~~vD~Vf~a 75 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG--KPLSDVH---PHLRGLVDLVLEPLDPE--ILAGADVVFLA 75 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC--cchHHhC---cccccccCceeecCCHH--HhcCCCEEEEC
Confidence 69999999999999999999987 57887776643221 1111110 111111 1223333322 45679999865
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhh
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAM 134 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~ 134 (322)
... . ....++..+.+. | +++|=.|+..-.
T Consensus 76 lP~----------~-------~~~~~v~~a~~a-G-~~VID~S~~fR~ 104 (343)
T PRK00436 76 LPH----------G-------VSMDLAPQLLEA-G-VKVIDLSADFRL 104 (343)
T ss_pred CCc----------H-------HHHHHHHHHHhC-C-CEEEECCcccCC
Confidence 421 0 123455555554 5 578888876433
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=51.89 Aligned_cols=56 Identities=27% Similarity=0.239 Sum_probs=46.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+.+++|+|+|+++.+|..+++.|.++|.+|+++.|+. +++.+.+.++|+||.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT----------------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc----------------------------hhHHHHHhhCCEEEE
Confidence 5679999999877889999999999999988887642 345667888999998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+.+.
T Consensus 94 at~~ 97 (168)
T cd01080 94 AVGK 97 (168)
T ss_pred cCCC
Confidence 7754
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=56.43 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=58.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEE-EeCCCCcChhhhhhccCCCCcEEEE-EccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKAT-VRDPNSPKTEHLRELDGATERLHLF-KANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++|.|.||||++|..+++.|.+. ++++..+ +++.+.. +.+.... +.+... ..++.+ .+.+.+.+++|+||-
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sag--k~~~~~~---~~l~~~~~~~~~~-~~~~~~~~~~DvVf~ 74 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAG--KPVSEVH---PHLRGLVDLNLEP-IDEEEIAEDADVVFL 74 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcC--CChHHhC---ccccccCCceeec-CCHHHhhcCCCEEEE
Confidence 47999999999999999999987 5677754 4433221 1111111 111111 111221 123445568999986
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhh
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAM 134 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~ 134 (322)
+..- . ....++..+.+. | .++|=.|+..-.
T Consensus 75 alP~----------~-------~s~~~~~~~~~~-G-~~VIDlS~~fR~ 104 (346)
T TIGR01850 75 ALPH----------G-------VSAELAPELLAA-G-VKVIDLSADFRL 104 (346)
T ss_pred CCCc----------h-------HHHHHHHHHHhC-C-CEEEeCChhhhc
Confidence 6521 0 234566666565 5 688888887443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0059 Score=50.21 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=68.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---h--------------------hhhhccCCCCcEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---E--------------------HLRELDGATERLHL 62 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~--------------------~~~~~~~~~~~~~~ 62 (322)
+..+|+|.|++| +|+++++.|+..|. +++++|.+.-.... + .++++.. ..+++.
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp-~v~i~~ 95 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNP-NVKLSI 95 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCC-CCEEEE
Confidence 357999999666 99999999999995 57788765322111 0 0111111 234555
Q ss_pred EEccCCC-ccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC
Q 020747 63 FKANLLE-EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 63 ~~~Dl~~-~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~ 137 (322)
+..++++ .+....+++++|+||.+- ++ ......+-+.|++. + ..+|+.++. +.+|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~dvVi~~~--------d~--------~~~~~~ln~~c~~~-~-ip~i~~~~~-G~~G~ 152 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKFTLVIATE--------EN--------YERTAKVNDVCRKH-H-IPFISCATY-GLIGY 152 (198)
T ss_pred EecccccchhhHHHHHhCCCEEEECC--------CC--------HHHHHHHHHHHHHc-C-CCEEEEEee-cCEEE
Confidence 5556643 345567788999999553 11 11223455778876 5 468888876 55554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0083 Score=52.67 Aligned_cols=165 Identities=15% Similarity=0.073 Sum_probs=93.2
Q ss_pred EECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhh--hhcc-CCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 13 VTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHL--RELD-GATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 13 VtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~--~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+| +|.+|++++..|+..+. ++..+++.........+ .... .....++.. + .+ .+.++++|+||-.|
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~----~~~~~daDivVita 72 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GD----YSDCKDADLVVITA 72 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CC----HHHHCCCCEEEECC
Confidence 456 59999999999998884 68888886644332111 1111 111222222 1 22 24678999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
|..... ..+..+.++.|+.-.+.+.+.+++...-..+|.+|--..+-.. ...... ..++. ...|.
T Consensus 73 g~~rk~-g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~-------~~~~~s-g~p~~------~viG~ 137 (299)
T TIGR01771 73 GAPQKP-GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTY-------VAWKLS-GFPKN------RVIGS 137 (299)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH-------HHHHHh-CCCHH------HEEec
Confidence 974332 2334688999999999999999987333356665543111000 000000 00000 11233
Q ss_pred -HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 168 -AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 168 -sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
+.....++-..+++..+++..-++. .|+|....
T Consensus 138 gt~LDs~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 138 GTVLDTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred cchHHHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 2233345555666666887777775 47887533
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00015 Score=58.83 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=27.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|.| .||+|.-++..|++.||+|++++.++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5899997 999999999999999999999998763
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=55.14 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=46.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|.|+|++|.+|+.+++.+.+. +.++.++ ++++..... . -..++....+++++++++|+||++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~-~-------------~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG-Q-------------GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-c-------------CCCCccccCCHHHhccCCCEEEEC
Confidence 58999999999999999998874 6887765 444322211 0 122444456677777789999988
Q ss_pred cc
Q 020747 87 AS 88 (322)
Q Consensus 87 A~ 88 (322)
+.
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 74
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0044 Score=54.55 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=69.6
Q ss_pred EEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhh--hhcc-CCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHL--RELD-GATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
|.|+|+ |.+|+.++..|+..|. +|+++++++.......+ .... .......+ .. + .+.+ .++++|+||.+
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I-~~--t--~d~~-~l~dADiVIit 73 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV-TG--T--NDYE-DIAGSDVVVIT 73 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE-EE--c--CCHH-HhCCCCEEEEe
Confidence 468997 9999999999998886 99999998653321111 1110 00111111 11 1 1233 47899999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++..... .....+....|+.-.+.+++.+.+......+|.+|-
T Consensus 74 ~g~p~~~-~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 74 AGIPRKP-GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred cCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9864322 222345667799999999999988733334555553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0062 Score=56.10 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=32.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
+|+|.|+| .|++|..++..|++.||+|++.++++..
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~ 38 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHA 38 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHH
Confidence 47899998 8999999999999999999999987654
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0016 Score=56.57 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=48.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhh-hccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLR-ELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.++++++|+|+ |.+|++++..|.+.| .+|++.+|+..+. +.+. .+.. ...+.+ ++ +....+.++|+|
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a--~~l~~~~~~-~~~~~~---~~----~~~~~~~~~Div 189 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERA--EELAKLFGA-LGKAEL---DL----ELQEELADFDLI 189 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH--HHHHHHhhh-ccceee---cc----cchhccccCCEE
Confidence 45689999996 999999999999999 7899999976433 1221 1111 000111 11 233456788999
Q ss_pred EEcccC
Q 020747 84 FHTASP 89 (322)
Q Consensus 84 ih~A~~ 89 (322)
|++...
T Consensus 190 InaTp~ 195 (278)
T PRK00258 190 INATSA 195 (278)
T ss_pred EECCcC
Confidence 998754
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=51.71 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++++|+|+|+ |.+|+.+++.|.+.| ++|++.+|+..... ........ ..+..+.. +..++++++|+||
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~-~~~~~~~~-----~~~~~~~~---~~~~~~~~~Dvvi 86 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAK-ALAERFGE-----LGIAIAYL---DLEELLAEADLII 86 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHH-HHHHHHhh-----cccceeec---chhhccccCCEEE
Confidence 45689999996 999999999999996 78999988754321 11111110 00112222 3344578899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
++...
T Consensus 87 ~~~~~ 91 (155)
T cd01065 87 NTTPV 91 (155)
T ss_pred eCcCC
Confidence 98864
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.016 Score=54.20 Aligned_cols=120 Identities=17% Similarity=0.094 Sum_probs=71.5
Q ss_pred EECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcccCccc
Q 020747 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIF 92 (322)
Q Consensus 13 VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~~~ 92 (322)
|+||+|.+|.++++.|...|.+|++..+....... . ...++.-+..|.+..+..+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~-----~--~~~~~~~~~~d~~~~~~~~------------------ 97 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA-----G--WGDRFGALVFDATGITDPA------------------ 97 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccccc-----C--cCCcccEEEEECCCCCCHH------------------
Confidence 88899999999999999999999987554321100 0 0011222222222222111
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHhhc-CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHH
Q 020747 93 LSDNPQADIVDPAVMGTLNVLRSCAKV-HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTL 171 (322)
Q Consensus 93 ~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~ 171 (322)
. +.+....+++..+. ....+||++||.....+. ..|+.+|.+
T Consensus 98 -------~-----l~~~~~~~~~~l~~l~~~griv~i~s~~~~~~~-------------------------~~~~~akaa 140 (450)
T PRK08261 98 -------D-----LKALYEFFHPVLRSLAPCGRVVVLGRPPEAAAD-------------------------PAAAAAQRA 140 (450)
T ss_pred -------H-----HHHHHHHHHHHHHhccCCCEEEEEccccccCCc-------------------------hHHHHHHHH
Confidence 1 11222222222221 123589999997332110 239999999
Q ss_pred HHHHHHHHHHHc--CccEEEEcCCC
Q 020747 172 AEEAAWKFAKEN--GIDLVAIHPGT 194 (322)
Q Consensus 172 ~e~~~~~~~~~~--~~~~~~~rp~~ 194 (322)
.+.+++.+++|+ ++++..+.|+.
T Consensus 141 l~gl~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 141 LEGFTRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHHHHHHhhcCCEEEEEecCC
Confidence 999999999885 78888887764
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0029 Score=54.90 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
..++++|+|.|++|.+|+.++..|+++|.+|++..|+. .++...++++|+||
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t----------------------------~~L~~~~~~aDIvI 207 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT----------------------------QNLPELVKQADIIV 207 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc----------------------------hhHHHHhccCCEEE
Confidence 35689999999999999999999999999888776521 13444557889999
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
++.|
T Consensus 208 ~AtG 211 (283)
T PRK14192 208 GAVG 211 (283)
T ss_pred EccC
Confidence 9986
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0087 Score=45.91 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=67.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh-h--h------------ccCC--CCcEEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL-R--E------------LDGA--TERLHLFKAN 66 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~-~--~------------~~~~--~~~~~~~~~D 66 (322)
.++|+|.| .|.+|+++++.|+..|. +++++|.+.=.... ..+ . . +... ..+++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 47899999 89999999999999996 68888765322111 000 0 0 0011 3356667777
Q ss_pred CCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhc
Q 020747 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAML 135 (322)
Q Consensus 67 l~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~ 135 (322)
+ +.+....+++++|+||.+.. + ...-..+.+.|++. + ..+|+.++. +.+
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d--------~--------~~~~~~l~~~~~~~-~-~p~i~~~~~-g~~ 129 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVD--------S--------LAARLLLNEICREY-G-IPFIDAGVN-GFY 129 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESS--------S--------HHHHHHHHHHHHHT-T--EEEEEEEE-TTE
T ss_pred c-ccccccccccCCCEEEEecC--------C--------HHHHHHHHHHHHHc-C-CCEEEEEee-cCE
Confidence 7 44567788889999998742 1 22233566778776 5 478887776 443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=57.50 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=52.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++|+|.|+ |++|+.++..+.+.|++|++++.++..... . .. -..+.+|..|.+.+.++++.+|+|.
T Consensus 3 ~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~-~---~a-----d~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 3 KTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAA-Q---VA-----DEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh-H---hC-----ceEEecCCCCHHHHHHHHhcCCEEE
Confidence 68999996 799999999999999999999876543221 1 11 1456688999999999999999874
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0077 Score=50.74 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=64.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCCC--CcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGAT--ERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~~--~~~~~~~~ 65 (322)
+.++|+|.| .|.+|+++++.|...|. +++++|.+.-+... +.+ +.+.... -+++.+..
T Consensus 20 ~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 457999999 89999999999999995 56666554311111 000 0011112 24555555
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+++ .+.+.++++++|+||.+..- . ..-..+-+.|++. + ..+|+.+..
T Consensus 99 ~i~-~~~~~~~~~~~DvVi~~~d~-------~---------~~r~~l~~~~~~~-~-ip~i~~g~~ 145 (228)
T cd00757 99 RLD-AENAEELIAGYDLVLDCTDN-------F---------ATRYLINDACVKL-G-KPLVSGAVL 145 (228)
T ss_pred eeC-HHHHHHHHhCCCEEEEcCCC-------H---------HHHHHHHHHHHHc-C-CCEEEEEec
Confidence 553 35567788899999977521 1 1123466777776 5 467777665
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.013 Score=48.03 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=65.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---------------------hhhhhccCCCCcEEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---------------------EHLRELDGATERLHLFK 64 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 64 (322)
+.++|+|.|+.| +|+++++.|+..|. +++++|.+.-.... +.+++++. ..+++.+.
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-~v~i~~~~ 97 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-RVKVSVDT 97 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC-CCEEEEEe
Confidence 357999999655 99999999999995 57777765322111 01112211 22455555
Q ss_pred ccCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC
Q 020747 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 65 ~Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~ 137 (322)
..+++ ...+.++++|+||.+.. + ...-..+-+.|++. ++ .+|+.++. +.+|.
T Consensus 98 ~~~~~--~~~~~~~~~dvVi~~~~--------~--------~~~~~~ln~~c~~~-~i-p~i~~~~~-G~~G~ 149 (197)
T cd01492 98 DDISE--KPEEFFSQFDVVVATEL--------S--------RAELVKINELCRKL-GV-KFYATGVH-GLFGF 149 (197)
T ss_pred cCccc--cHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEEec-CCEEE
Confidence 55542 34567889999996531 1 11223455778876 64 67888876 55543
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0015 Score=58.43 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=43.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEE---EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKAT---VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+|+|.||||++|++|++.|.+++|.+..+ .+..+... .+. + ........|+. . ..++++|+||-+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~--~~~-~----~~~~~~~~~~~----~-~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGR--KVT-F----KGKELEVNEAK----I-ESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCC--eee-e----CCeeEEEEeCC----h-HHhcCCCEEEEC
Confidence 58999999999999999999988875433 34433221 111 1 11344555553 1 234789999977
Q ss_pred cc
Q 020747 87 AS 88 (322)
Q Consensus 87 A~ 88 (322)
++
T Consensus 69 ~g 70 (339)
T TIGR01296 69 AG 70 (339)
T ss_pred CC
Confidence 65
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.021 Score=49.37 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCCC--CcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGAT--ERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~~--~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. ++.++|.+.-+.++ +.+ +.+...+ .+++.+..
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 457999999 78999999999999995 67777765322221 100 0011112 34555555
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.++ ++...++++++|+||.+. +++ ++..-..+-++|++. + ..+|+.|..
T Consensus 105 ~l~-~~n~~~ll~~~DlVvD~~--------D~~------~~~~r~~ln~~c~~~-~-iP~V~~~~~ 153 (287)
T PRK08223 105 GIG-KENADAFLDGVDVYVDGL--------DFF------EFDARRLVFAACQQR-G-IPALTAAPL 153 (287)
T ss_pred ccC-ccCHHHHHhCCCEEEECC--------CCC------cHHHHHHHHHHHHHc-C-CCEEEEecc
Confidence 665 355778889999998553 111 112234566778776 5 457776554
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0033 Score=54.48 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=46.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++++++|+|+ |.+|++++..|++.|++|++.+|+..+.. +....+.. ...+... ++.+ ....++|+||++
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~-~la~~~~~-~~~~~~~--~~~~-----~~~~~~DivIna 185 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAE-ELAERFQR-YGEIQAF--SMDE-----LPLHRVDLIINA 185 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhh-cCceEEe--chhh-----hcccCccEEEEC
Confidence 4689999997 89999999999999999999988754321 11111111 1112221 1111 123468999999
Q ss_pred ccC
Q 020747 87 ASP 89 (322)
Q Consensus 87 A~~ 89 (322)
.+.
T Consensus 186 tp~ 188 (270)
T TIGR00507 186 TSA 188 (270)
T ss_pred CCC
Confidence 864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0017 Score=54.40 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=32.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
|+|.|+||+|.+|++++..|.+.|++|.+.+|+++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~ 36 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEK 36 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence 479999999999999999999999999988887644
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0012 Score=57.66 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++++|+|. |.+|+.+++.|...|.+|++.+|+.... ....+. ....+ +.+++.++++++|+||+
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~--~~~~~~-----g~~~~-----~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADL--ARITEM-----GLIPF-----PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHC-----CCeee-----cHHHHHHHhccCCEEEE
Confidence 45789999995 8899999999999999999999876332 111111 11111 23456778889999998
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 216 t~ 217 (287)
T TIGR02853 216 TI 217 (287)
T ss_pred CC
Confidence 75
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.021 Score=47.05 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=52.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeC---CCCcChhh-----h---------hhccCC--CCcEEEEEcc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRD---PNSPKTEH-----L---------RELDGA--TERLHLFKAN 66 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~~~-----~---------~~~~~~--~~~~~~~~~D 66 (322)
+.++|+|.| .|.+|+.++..|++.|. +++++|++ .+....+. . +.+... ..+++.+..+
T Consensus 20 ~~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 20 EQATVAICG-LGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 457899999 58899999999999997 69888887 33222110 0 000111 2345555666
Q ss_pred CCCccchHHhhCCCCEEEEc
Q 020747 67 LLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 67 l~~~~~~~~~~~~~d~vih~ 86 (322)
++. +.+..+++++|+||-+
T Consensus 99 i~~-~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 99 ITE-ENIDKFFKDADIVCEA 117 (200)
T ss_pred CCH-hHHHHHhcCCCEEEEC
Confidence 643 5677788899999966
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0027 Score=58.54 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=31.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
|+|.|+| .|++|..++..|++.||+|++.++++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~~ 35 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQEK 35 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHHH
Confidence 3699998 8999999999999999999999987644
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.013 Score=45.32 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=63.0
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---------------------hhhhhccCCCCcEEEEEccC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---------------------EHLRELDGATERLHLFKANL 67 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------------------~~~~~~~~~~~~~~~~~~Dl 67 (322)
+|+|.| .|.+|+++++.|...|. ++++++.+.-.... +.+.++.. ..+++.+..++
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p-~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP-GVNVTAVPEGI 78 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC-CcEEEEEeeec
Confidence 588999 59999999999999997 68888765321111 01111111 23445555555
Q ss_pred CCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 68 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.+.. ....+++.|+||.+..- ......+.+.|++. + ..+|..++.
T Consensus 79 ~~~~-~~~~~~~~diVi~~~d~----------------~~~~~~l~~~~~~~-~-i~~i~~~~~ 123 (143)
T cd01483 79 SEDN-LDDFLDGVDLVIDAIDN----------------IAVRRALNRACKEL-G-IPVIDAGGL 123 (143)
T ss_pred Chhh-HHHHhcCCCEEEECCCC----------------HHHHHHHHHHHHHc-C-CCEEEEcCC
Confidence 4432 35677889999977521 22344677888886 5 467777776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.023 Score=48.41 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCC--CCcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGA--TERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~--~~~~~~~~~ 65 (322)
+.++|+|.|+ |.+|+++++.|+..|. +++++|.+.-+... +.+ +.+... ..+++.+..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 4579999996 9999999999999995 67777664322211 000 011111 234555555
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.++ .+.+..+++++|+||.+.. + ...-..+-++|++. + ..+|+.++.
T Consensus 110 ~i~-~~~~~~~~~~~DiVi~~~D--------~--------~~~r~~ln~~~~~~-~-ip~v~~~~~ 156 (245)
T PRK05690 110 RLD-DDELAALIAGHDLVLDCTD--------N--------VATRNQLNRACFAA-K-KPLVSGAAI 156 (245)
T ss_pred cCC-HHHHHHHHhcCCEEEecCC--------C--------HHHHHHHHHHHHHh-C-CEEEEeeec
Confidence 554 3456678889999997751 1 11223456777776 5 467775554
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.022 Score=48.45 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=68.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
++|+|.|||+ =|+.|++.|.+.|++|++..-...... ....+....|-+.+.+.+.++++ ++++||..
T Consensus 3 ~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~~---------~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDA 72 (248)
T PRK08057 3 PRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGGP---------ADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDA 72 (248)
T ss_pred ceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCCc---------ccCCceEEECCCCCHHHHHHHHHHCCCCEEEEC
Confidence 6899999997 699999999999999887665442210 12346777888878889999987 78999977
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEE
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~ 127 (322)
. +|+. ..-+.++.++|.+. +...+-|
T Consensus 73 T--------HPfA------~~is~~a~~ac~~~-~ipyiR~ 98 (248)
T PRK08057 73 T--------HPYA------AQISANAAAACRAL-GIPYLRL 98 (248)
T ss_pred C--------CccH------HHHHHHHHHHHHHh-CCcEEEE
Confidence 4 3322 23356888999987 7765544
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0042 Score=55.54 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCe
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYT 34 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~ 34 (322)
.++|.|.||||++|++|++.|.+++|.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 468999999999999999999998873
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0043 Score=56.31 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
.++|.|.||.|.+|+.+++.|.+.|++|++.+|+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4789999999999999999999999999999874
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.015 Score=51.89 Aligned_cols=111 Identities=21% Similarity=0.132 Sum_probs=67.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh----------hhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT----------EHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|+|.|.| +||+|.-..--|++.||+|++++.++++... +.++++-..+ .-.+-++--.+.+++++
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~----~~~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKEN----LASGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc----cccCcEEEEcCHHHHHh
Confidence 5799999 9999999999999999999999987644311 1111110000 00011222235667888
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+.|++|-+.|-.... .-..++.....+++...+....+++|.+=|+
T Consensus 76 ~adv~fIavgTP~~~-------dg~aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 76 DADVVFIAVGTPPDE-------DGSADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred cCCEEEEEcCCCCCC-------CCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 899999877642221 1223455566666666665333366666554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0077 Score=52.05 Aligned_cols=56 Identities=25% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+.+++|+|+|+++.+|+.++..|.++|..|++..++. .++.+.++++|+||.
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS----------------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEE
Confidence 5689999999999999999999999999998876531 245667888999998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
++|.
T Consensus 208 Avg~ 211 (286)
T PRK14175 208 AVGK 211 (286)
T ss_pred CCCC
Confidence 8765
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.011 Score=52.28 Aligned_cols=79 Identities=22% Similarity=0.179 Sum_probs=49.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhh----hhccCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHL----RELDGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
.++|.|.| +|-+|+.++..|+..|++|++.++++..... ..+ ..+...+.........++--.+++++++++|
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD 85 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence 47899998 7999999999999999999999987643211 011 1110000000000112222235677889999
Q ss_pred EEEEcc
Q 020747 82 GVFHTA 87 (322)
Q Consensus 82 ~vih~A 87 (322)
.|+-+.
T Consensus 86 lViEav 91 (321)
T PRK07066 86 FIQESA 91 (321)
T ss_pred EEEECC
Confidence 999775
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0022 Score=56.24 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++++|+|. |.+|+.++..|...|.+|++.+|+.... ...... + .+.+ ..+++.+.++++|+||+
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~--~~~~~~---G--~~~~-----~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHL--ARITEM---G--LSPF-----HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHc---C--Ceee-----cHHHHHHHhCCCCEEEE
Confidence 35789999995 8899999999999999999999885332 111111 1 1221 22456778889999999
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
++
T Consensus 217 t~ 218 (296)
T PRK08306 217 TI 218 (296)
T ss_pred CC
Confidence 75
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.002 Score=59.64 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=45.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|+||+|.+|+.+++.|.+.|++|++.+|++.... +...+. .+. -..+....++++|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-~~a~~~-----gv~-------~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-EVAKEL-----GVE-------YANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-HHHHHc-----CCe-------eccCHHHHhccCCEEEEec
Confidence 47999999999999999999999999999998754321 111111 111 1123455677889998665
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0037 Score=50.48 Aligned_cols=68 Identities=22% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|-||+++++.|..-|.+|++.+|+..... .... ..+ ...+++++++++|+|+.
T Consensus 34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~--~~~~-----~~~--------~~~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEE--GADE-----FGV--------EYVSLDELLAQADIVSL 97 (178)
T ss_dssp STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHH--HHHH-----TTE--------EESSHHHHHHH-SEEEE
T ss_pred cCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhh--hccc-----ccc--------eeeehhhhcchhhhhhh
Confidence 4579999999 899999999999999999999999874321 0000 001 23567888999999987
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 98 ~~pl 101 (178)
T PF02826_consen 98 HLPL 101 (178)
T ss_dssp -SSS
T ss_pred hhcc
Confidence 7654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.026 Score=47.86 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=65.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCCCC--cEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGATE--RLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~~~--~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. +++++|.+.-+... +.+ +.+....+ +++.+..
T Consensus 23 ~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 457899999 88999999999999994 67777775433222 100 00111122 3444444
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL 136 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~ 136 (322)
.++ .+.+.+++++.|+||.+. ++ ......+-++|.+. + ..+|+.++. ..+|
T Consensus 102 ~i~-~~~~~~~~~~~DlVvd~~--------D~--------~~~r~~ln~~~~~~-~-ip~v~~~~~-g~~G 152 (240)
T TIGR02355 102 KLD-DAELAALIAEHDIVVDCT--------DN--------VEVRNQLNRQCFAA-K-VPLVSGAAI-RMEG 152 (240)
T ss_pred cCC-HHHHHHHhhcCCEEEEcC--------CC--------HHHHHHHHHHHHHc-C-CCEEEEEec-ccEe
Confidence 443 345677888999999775 11 11223456777776 5 457776554 4433
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=48.39 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=63.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC---CCcChh-----------------hhhhccCCCCcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP---NSPKTE-----------------HLRELDGATERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~~~-----------------~~~~~~~~~~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|...|. +++++|.+. +....+ .+.++.. ..+++.+..
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp-~v~v~~~~~ 104 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP-FVEIEAHNE 104 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC-CCEEEEEee
Confidence 457899999 79999999999999996 588888762 111100 1111111 234555555
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.+++ +.+.++++++|+||.+. ++ ...-..+.+.|.+..+ ..+|+.+..
T Consensus 105 ~i~~-~~~~~~~~~~DvVI~a~--------D~--------~~~r~~l~~~~~~~~~-~p~I~~~~~ 152 (212)
T PRK08644 105 KIDE-DNIEELFKDCDIVVEAF--------DN--------AETKAMLVETVLEHPG-KKLVAASGM 152 (212)
T ss_pred ecCH-HHHHHHHcCCCEEEECC--------CC--------HHHHHHHHHHHHHhCC-CCEEEeehh
Confidence 5654 45667888999999773 11 1122345566666423 467776544
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.017 Score=52.57 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=66.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-----------------hh-hhhccCCCC--cEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-----------------EH-LRELDGATE--RLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------~~-~~~~~~~~~--~~~~~~~ 65 (322)
+.++|+|.| .|.+|+++++.|+..|. ++++++++.-.... +. .+.+....+ +++.+..
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 457899997 68899999999999996 68888876211100 10 111111122 3444444
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL 136 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~ 136 (322)
.+++ +.+..+++++|+||++.. ++ ..-..+-++|++. + ..+|+.+.. +++|
T Consensus 213 ~~~~-~~~~~~~~~~D~Vv~~~d--------~~--------~~r~~ln~~~~~~-~-ip~i~~~~~-g~~g 263 (376)
T PRK08762 213 RVTS-DNVEALLQDVDVVVDGAD--------NF--------PTRYLLNDACVKL-G-KPLVYGAVF-RFEG 263 (376)
T ss_pred cCCh-HHHHHHHhCCCEEEECCC--------CH--------HHHHHHHHHHHHc-C-CCEEEEEec-cCEE
Confidence 4443 456678889999998852 11 1122356777776 5 467887765 4433
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.004 Score=59.76 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=54.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.+|+|.| .|-+|++++++|.++|++|++++++++.. ++.. ......+.||.+|++.++++ ++++|.|+-+
T Consensus 418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~-----~~~~--~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRV-----DELR--ERGIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHH-----HHHH--HCCCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 4788888 89999999999999999999999876432 2222 13478999999999888755 5678877633
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0056 Score=53.69 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=28.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~ 42 (322)
+||.|.||+|+-|.+|++.|+.+. .++..++.+.
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~ 37 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRE 37 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechh
Confidence 689999999999999999999886 5766554443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0096 Score=51.79 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=46.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+|+|.|+|.+|.+|+.++..|+++|+.|++..|+. .+++++.+++|+||
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVI 207 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS----------------------------TDAKALCRQADIVV 207 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEE
Confidence 35689999999999999999999999999999875432 13556777889999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
-+.|.
T Consensus 208 savg~ 212 (301)
T PRK14194 208 AAVGR 212 (301)
T ss_pred EecCC
Confidence 87764
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0029 Score=50.36 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=43.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
++|.++| .|-.|+.+++.|+++||+|++.+|++++. +.+.+. .++ --++..++++++|+|+-+-
T Consensus 2 ~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~--~~~~~~-----g~~-------~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKA--EALAEA-----GAE-------VADSPAEAAEQADVVILCV 65 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHH--HHHHHT-----TEE-------EESSHHHHHHHBSEEEE-S
T ss_pred CEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhh--hhhHHh-----hhh-------hhhhhhhHhhcccceEeec
Confidence 6899999 79999999999999999999999876333 112111 111 1234566777789988664
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0061 Score=56.88 Aligned_cols=115 Identities=15% Similarity=0.120 Sum_probs=63.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCC-----CcEEEE----Ec-cCCCccchHHh
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGAT-----ERLHLF----KA-NLLEEGSFDSA 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~----~~-Dl~~~~~~~~~ 76 (322)
|+|.|.| .|++|..++-.|++.| ++|++++.++... ..++... +.+.-+ .+ .++-..++...
T Consensus 2 m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-----~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~ 75 (473)
T PLN02353 2 VKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVPRI-----DAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH 75 (473)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-----HHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH
Confidence 5799997 9999999999999985 8899999876432 2221110 000000 01 11111234556
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
++++|++|-|.+........+ .-...++......++.+.+.....++|.+.|+
T Consensus 76 i~~advi~I~V~TP~~~~g~~--~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 76 VAEADIVFVSVNTPTKTRGLG--AGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred HhcCCEEEEEeCCCCCCCCCc--CCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 788999998876332210000 00122444555566655554333456666665
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=44.79 Aligned_cols=57 Identities=30% Similarity=0.237 Sum_probs=46.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.+++|+|+|.|.+.-+|..++..|.++|..|+...++. .++++.++++|+||
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t----------------------------~~l~~~v~~ADIVv 76 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT----------------------------IQLQSKVHDADVVV 76 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC----------------------------cCHHHHHhhCCEEE
Confidence 46789999999999999999999999999988775422 14556788899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
-..+.
T Consensus 77 sAtg~ 81 (140)
T cd05212 77 VGSPK 81 (140)
T ss_pred EecCC
Confidence 77764
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.039 Score=46.54 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---h-------------------hhhhccCCCCcEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---E-------------------HLRELDGATERLHLF 63 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~-------------------~~~~~~~~~~~~~~~ 63 (322)
+..+|+|.| .|.+|+++++.|+..|. +++++|.+.-+... + .+.++.. .-+++.+
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np-~v~v~~~ 103 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS-DIKIETF 103 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC-CCEEEEE
Confidence 457899999 88999999999999995 67777754322111 0 0111111 2345555
Q ss_pred EccCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC
Q 020747 64 KANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 64 ~~Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~ 137 (322)
...++ .+.++++++++|+||.+.. ++ ..-..+-++|++. + ..+|+.++. +.+|.
T Consensus 104 ~~~~~-~~~~~~~l~~~D~Vid~~d--------~~--------~~r~~l~~~~~~~-~-ip~i~g~~~-g~~G~ 157 (231)
T PRK08328 104 VGRLS-EENIDEVLKGVDVIVDCLD--------NF--------ETRYLLDDYAHKK-G-IPLVHGAVE-GTYGQ 157 (231)
T ss_pred eccCC-HHHHHHHHhcCCEEEECCC--------CH--------HHHHHHHHHHHHc-C-CCEEEEeec-cCEEE
Confidence 55553 3456778889999997751 11 1112344567775 5 457777766 55543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=53.69 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=52.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
...+|+|+|+ |-+|...++.|...|.+|++++|+..+. +.+... .. ..+..+..+++.+.+.++++|+||++
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~--~~l~~~---~g--~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRL--RQLDAE---FG--GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHH--HHHHHh---cC--ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 3467999985 8999999999999999999999875332 111111 11 11223455667788888999999988
Q ss_pred ccC
Q 020747 87 ASP 89 (322)
Q Consensus 87 A~~ 89 (322)
+..
T Consensus 238 ~~~ 240 (370)
T TIGR00518 238 VLI 240 (370)
T ss_pred ccc
Confidence 754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=54.85 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCCCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC
Q 020747 5 EGEEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68 (322)
Q Consensus 5 ~~~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (322)
.+++|+||||+| ||-.|.+|++++..+|++|+.+.-.-+ .. ....++.+..+
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~---------~p~~v~~i~V~-- 320 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA---------DPQGVKVIHVE-- 320 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC---------CCCCceEEEec--
Confidence 367899999987 799999999999999999998863211 10 02234554432
Q ss_pred CccchHHhhC---CCCEEEEcccCc
Q 020747 69 EEGSFDSAVD---GCDGVFHTASPV 90 (322)
Q Consensus 69 ~~~~~~~~~~---~~d~vih~A~~~ 90 (322)
.-.++.++++ ..|++|++||+.
T Consensus 321 ta~eM~~av~~~~~~Di~I~aAAVa 345 (475)
T PRK13982 321 SARQMLAAVEAALPADIAIFAAAVA 345 (475)
T ss_pred CHHHHHHHHHhhCCCCEEEEecccc
Confidence 3333333322 379999999964
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.032 Score=50.33 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=64.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCCC--CcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGAT--ERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~~--~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. +++++|.+.-+... +.+ +.+.... .+++.+..
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 457999999 59999999999999995 67777775422211 100 0111112 34555555
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.++. +....+++++|+||.+.. + ...-..+-++|.+. + ..+|+.++.
T Consensus 106 ~i~~-~~~~~~~~~~DvVvd~~d--------~--------~~~r~~~n~~c~~~-~-ip~v~~~~~ 152 (355)
T PRK05597 106 RLTW-SNALDELRDADVILDGSD--------N--------FDTRHLASWAAARL-G-IPHVWASIL 152 (355)
T ss_pred ecCH-HHHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-C-CCEEEEEEe
Confidence 6653 455678889999997751 1 11222355677776 5 357777655
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=55.24 Aligned_cols=76 Identities=21% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-CCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-GCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vi 84 (322)
+++++|+|||++| +|.+.++.|++.|++|++.++...... .....+.. ..+.+..++. +. .++. ++|.||
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~-~~~~~l~~--~g~~~~~~~~--~~---~~~~~~~d~vV 73 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSEN-PEAQELLE--EGIKVICGSH--PL---ELLDEDFDLMV 73 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccch-hHHHHHHh--cCCEEEeCCC--CH---HHhcCcCCEEE
Confidence 4568999999988 999999999999999999987653321 11122221 1234433321 11 1233 489999
Q ss_pred EcccCc
Q 020747 85 HTASPV 90 (322)
Q Consensus 85 h~A~~~ 90 (322)
..+|..
T Consensus 74 ~s~gi~ 79 (447)
T PRK02472 74 KNPGIP 79 (447)
T ss_pred ECCCCC
Confidence 998853
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=45.39 Aligned_cols=58 Identities=28% Similarity=0.272 Sum_probs=43.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+|+|+|.|.+..+|+.|+..|.++|..|+...... .++++..+++|+||
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T----------------------------~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT----------------------------KNLQEITRRADIVV 84 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS----------------------------SSHHHHHTTSSEEE
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC----------------------------CcccceeeeccEEe
Confidence 35689999999999999999999999999988754321 34567788899999
Q ss_pred EcccCc
Q 020747 85 HTASPV 90 (322)
Q Consensus 85 h~A~~~ 90 (322)
-.+|..
T Consensus 85 sa~G~~ 90 (160)
T PF02882_consen 85 SAVGKP 90 (160)
T ss_dssp E-SSST
T ss_pred eeeccc
Confidence 888753
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.017 Score=50.96 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=50.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|-||+.+++.|..-|++|++.+|...... .+..+ ....+++++++++|+|+.
T Consensus 134 l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~------------~~~~~----~~~~~l~e~l~~aDvvv~ 196 (312)
T PRK15469 134 REDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP------------GVQSF----AGREELSAFLSQTRVLIN 196 (312)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC------------Cceee----cccccHHHHHhcCCEEEE
Confidence 4578999999 999999999999999999999987543210 11111 134578899999999997
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 197 ~lP 199 (312)
T PRK15469 197 LLP 199 (312)
T ss_pred CCC
Confidence 763
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=54.02 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
+.|+|+|+| +|..|..+++.+.+.|++|++++.++...... .. + ..+..|..|.+.+.++.+ ++|.|+
T Consensus 11 ~~~~ilIiG-~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~----~a---d--~~~~~~~~d~~~l~~~~~~~~id~vi 80 (395)
T PRK09288 11 SATRVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ----VA---H--RSHVIDMLDGDALRAVIEREKPDYIV 80 (395)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH----hh---h--heEECCCCCHHHHHHHHHHhCCCEEE
Confidence 357999998 57899999999999999999998765432211 00 1 246678888888888777 789888
Q ss_pred Ec
Q 020747 85 HT 86 (322)
Q Consensus 85 h~ 86 (322)
-.
T Consensus 81 ~~ 82 (395)
T PRK09288 81 PE 82 (395)
T ss_pred Ee
Confidence 54
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.015 Score=52.36 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=30.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRD 41 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~ 41 (322)
.++|.|+|.+|.||+.+++.|.+. |++|++.++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 379999999999999999999975 8899988763
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0089 Score=53.20 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=30.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|.| +|.+|+.++..|++.|++|.+.+|++.
T Consensus 2 mkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 2 MKIAVLG-AGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5799999 699999999999999999999998653
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.044 Score=48.21 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=66.3
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---h------------------hhhhccCCCCcEEEEEccC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---E------------------HLRELDGATERLHLFKANL 67 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~------------------~~~~~~~~~~~~~~~~~Dl 67 (322)
+|+|.| .|.+|+++++.|+..|. ++.++|.+.-+... + .+.++. ..-+++.+..++
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHANI 78 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEeccC
Confidence 589999 59999999999999995 57777765322211 1 001111 123566677788
Q ss_pred CCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc
Q 020747 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL 136 (322)
Q Consensus 68 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~ 136 (322)
++.......+++.|+||.+. ++ ...-..+-+.|+.. + ..+|..++. +++|
T Consensus 79 ~~~~~~~~f~~~~DvVv~a~--------Dn--------~~ar~~in~~c~~~-~-ip~I~~gt~-G~~G 128 (312)
T cd01489 79 KDPDFNVEFFKQFDLVFNAL--------DN--------LAARRHVNKMCLAA-D-VPLIESGTT-GFLG 128 (312)
T ss_pred CCccchHHHHhcCCEEEECC--------CC--------HHHHHHHHHHHHHC-C-CCEEEEecC-ccee
Confidence 76544457788999999664 11 22234556677775 4 457777765 4433
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.011 Score=53.77 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=51.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
..+++|+| .|-+|+.++++|.++|++|++++.+.. +. .. ..+...+.||.+|++.++++ +++++.||-+
T Consensus 240 k~HvII~G-~g~lg~~v~~~L~~~g~~vvVId~d~~----~~---~~--~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICG-HSPLAINTYLGLRQRGQAVTVIVPLGL----EH---RL--PDDADLIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEEC-CChHHHHHHHHHHHCCCCEEEEECchh----hh---hc--cCCCcEEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 35799999 678999999999999999988875421 11 11 23467899999999888765 5678888844
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.025 Score=45.43 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=49.8
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC---CCcCh-----------------hhhhhccCCCCcEEEEEccCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP---NSPKT-----------------EHLRELDGATERLHLFKANLL 68 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~~-----------------~~~~~~~~~~~~~~~~~~Dl~ 68 (322)
+|+|.| .|.+|+++++.|...|. +++++|.+. +.... ..+.++.. ..+++.+...++
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp-~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINP-FVKIEAINIKID 78 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCC-CCEEEEEEeecC
Confidence 589999 69999999999999997 588888765 11110 01111111 234555555554
Q ss_pred CccchHHhhCCCCEEEEcc
Q 020747 69 EEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 69 ~~~~~~~~~~~~d~vih~A 87 (322)
. +.++++++++|+||.+.
T Consensus 79 ~-~~~~~~l~~~DlVi~~~ 96 (174)
T cd01487 79 E-NNLEGLFGDCDIVVEAF 96 (174)
T ss_pred h-hhHHHHhcCCCEEEECC
Confidence 4 45677889999999773
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.014 Score=51.55 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=51.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
++|.|.| .|++|+-++..-...|++|++++-.++.+..+. --..+..+.+|+++++++.+.||+|
T Consensus 2 ~tvgIlG-GGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~v---------a~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 2 KTVGILG-GGQLGRMMALAAARLGIKVIVLDPDADAPAAQV---------ADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CeEEEEc-CcHHHHHHHHHHHhcCCEEEEecCCCCCchhhc---------ccceeecCCCCHHHHHHHHhhCCEE
Confidence 6899999 899999999999999999999986654432211 1145667777999999999999987
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=51.16 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.|+|.|.| +|.+|+++++.|.+.||+|.+.+|+.
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 36899998 89999999999999999999888864
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0092 Score=57.73 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=55.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
++|+|.| .|-+|+.+++.|.++|++++++++++... +.... .....+.||.++++.++++ ++++|.||-+
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v-----~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAV-----NLMRK--YGYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHH-----HHHHh--CCCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 5788888 89999999999999999999999876432 22221 2467899999999988876 5688988744
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=51.04 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=47.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+++|+|.| +|..|++++..|.+.|. +|++++|+..+... ..+.+........... .+++...++++|+||+
T Consensus 126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~-la~~l~~~~~~~~~~~-----~~~~~~~~~~aDiVIn 198 (284)
T PRK12549 126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAA-LADELNARFPAARATA-----GSDLAAALAAADGLVH 198 (284)
T ss_pred cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-HHHHHHhhCCCeEEEe-----ccchHhhhCCCCEEEE
Confidence 457999999 67899999999999996 78899887644321 1111111111122211 1334456678999999
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 199 aT 200 (284)
T PRK12549 199 AT 200 (284)
T ss_pred CC
Confidence 84
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=48.67 Aligned_cols=38 Identities=29% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 4 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
..+++|+|+|+|. |.+|+++++.|.+.|++|++.+++.
T Consensus 24 ~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 24 DSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3467899999995 7899999999999999999887764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.057 Score=45.53 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=66.4
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCC--CCcEEEEEccCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGA--TERLHLFKANLL 68 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~--~~~~~~~~~Dl~ 68 (322)
+|+|.| .|.+|+++++.|+..|. ++.++|.+.=+... +.+ +.+... .-+++.+..+++
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 488998 89999999999999995 57777765322111 110 000111 234666777776
Q ss_pred Cccch-HHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC
Q 020747 69 EEGSF-DSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 69 ~~~~~-~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~ 137 (322)
+..+. ..++++.|+||.+. + |...-..+-+.|... + ..+|..++. +..|.
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~--------D--------n~~aR~~ln~~c~~~-~-iplI~~g~~-G~~G~ 130 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNAL--------D--------NIIARRYVNGMLIFL-I-VPLIESGTE-GFKGN 130 (234)
T ss_pred hhhhchHHHHhCCCEEEECC--------C--------CHHHHHHHHHHHHHc-C-CCEEEEccc-CCceE
Confidence 54433 46788999999763 1 233344566777776 5 467777775 55443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.043 Score=49.64 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=46.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|.||+.+++.|..-|.+|++.++..... .+-....+++++++++|+|+.
T Consensus 114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-------------------~~~~~~~~L~ell~~sDiI~l 173 (378)
T PRK15438 114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTLLCDPPRADR-------------------GDEGDFRSLDELVQEADILTF 173 (378)
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCccccc-------------------ccccccCCHHHHHhhCCEEEE
Confidence 4679999999 79999999999999999999887532110 010123568888888998875
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
...
T Consensus 174 h~P 176 (378)
T PRK15438 174 HTP 176 (378)
T ss_pred eCC
Confidence 543
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=51.71 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----CC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----GC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~ 80 (322)
.+++.|||.||+|.+|++.++-....| .+|++. ++.+.. +..+++.. -...|..+++-.+...+ ++
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~-~s~e~~--~l~k~lGA------d~vvdy~~~~~~e~~kk~~~~~~ 226 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTA-CSKEKL--ELVKKLGA------DEVVDYKDENVVELIKKYTGKGV 226 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEE-cccchH--HHHHHcCC------cEeecCCCHHHHHHHHhhcCCCc
Confidence 457899999999999999999888889 455544 433322 33343321 12345556444444433 58
Q ss_pred CEEEEcccCc
Q 020747 81 DGVFHTASPV 90 (322)
Q Consensus 81 d~vih~A~~~ 90 (322)
|+|++|.|-.
T Consensus 227 DvVlD~vg~~ 236 (347)
T KOG1198|consen 227 DVVLDCVGGS 236 (347)
T ss_pred cEEEECCCCC
Confidence 9999999753
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.017 Score=50.60 Aligned_cols=72 Identities=25% Similarity=0.321 Sum_probs=50.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEE-----ccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK-----ANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~~~~~~~~~~~~~d~v 83 (322)
++|.|.| +|-.|++|+.-|.++||+|..-.|++.-. .++.....+.++.. .++.-..++..+++++|+|
T Consensus 2 ~kI~ViG-aGswGTALA~~la~ng~~V~lw~r~~~~~-----~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 2 MKIAVIG-AGSWGTALAKVLARNGHEVRLWGRDEEIV-----AEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred ceEEEEc-CChHHHHHHHHHHhcCCeeEEEecCHHHH-----HHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 5799999 78899999999999999999999976332 22222112222322 2333445788888999998
Q ss_pred EEc
Q 020747 84 FHT 86 (322)
Q Consensus 84 ih~ 86 (322)
+-.
T Consensus 76 v~a 78 (329)
T COG0240 76 VIA 78 (329)
T ss_pred EEE
Confidence 833
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.02 Score=49.88 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEE-eCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATV-RDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.+.+|+|+|.|.+|.+|..++..|+++|+.|++.. |+. +++++.+.+|+|
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-----------------------------~l~e~~~~ADIV 205 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-----------------------------DLPAVCRRADIL 205 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-----------------------------CHHHHHhcCCEE
Confidence 35789999999999999999999999999998873 321 245667788999
Q ss_pred EEcccC
Q 020747 84 FHTASP 89 (322)
Q Consensus 84 ih~A~~ 89 (322)
|-+.+.
T Consensus 206 Isavg~ 211 (296)
T PRK14188 206 VAAVGR 211 (296)
T ss_pred EEecCC
Confidence 977654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.013 Score=51.27 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
++|.|.| +|.+|+.++..|++.|++|++.++++..
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDEA 38 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 6899998 6999999999999999999999987643
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.032 Score=46.02 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=45.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++++|+|.|| |-+|...++.|++.|++|+++.+...+ .+..+.. ...+.+..-++. ...+.++|.||-
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~----~l~~l~~-~~~i~~~~~~~~-----~~~l~~adlVia 76 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTE----NLVKLVE-EGKIRWKQKEFE-----PSDIVDAFLVIA 76 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCH----HHHHHHh-CCCEEEEecCCC-----hhhcCCceEEEE
Confidence 46799999995 999999999999999999988653321 1222211 123555443322 234567898874
Q ss_pred c
Q 020747 86 T 86 (322)
Q Consensus 86 ~ 86 (322)
+
T Consensus 77 a 77 (202)
T PRK06718 77 A 77 (202)
T ss_pred c
Confidence 4
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.016 Score=52.90 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=28.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
+|.|.| .|++|..++..|+ .||+|+++++++...
T Consensus 2 kI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~~kv 35 (388)
T PRK15057 2 KITISG-TGYVGLSNGLLIA-QNHEVVALDILPSRV 35 (388)
T ss_pred EEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCHHHH
Confidence 688997 9999999996666 599999999987543
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.049 Score=51.63 Aligned_cols=102 Identities=19% Similarity=0.267 Sum_probs=67.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChh---hhhhcc-CCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTE---HLRELD-GATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~---~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
+..+|+|.| .|.+|++++..|+..|. ++.+++-+....... .+.+.. ..++.+.+...|.+..+++...+++.|
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCc
Confidence 346899999 88899999999999994 565664443321111 111222 225566666667778889999999999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccE
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~ 124 (322)
+|++.+- ++ +......+.++|.+. +...
T Consensus 207 iVi~vsD-------dy-------~~~~Lr~lN~acvke-gk~~ 234 (637)
T TIGR03693 207 WVLYVSD-------NG-------DIDDLHALHAFCKEE-GKGF 234 (637)
T ss_pred EEEEECC-------CC-------ChHHHHHHHHHHHHc-CCCe
Confidence 9998872 22 122245677777776 5333
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.026 Score=50.66 Aligned_cols=80 Identities=19% Similarity=0.052 Sum_probs=51.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|++.|.| .|-||+++++.|..-|.+|++.+|+..+.....+. +. ......+........+++++++++|+|+.
T Consensus 157 l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 157 LFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLL-IP--NGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhc-cc--cccccccccccCcccCHHHHHhhCCEEEE
Confidence 5679999999 79999999999999999999998864321110000 00 00001000111145678999999999997
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 233 ~lPl 236 (347)
T PLN02928 233 CCTL 236 (347)
T ss_pred CCCC
Confidence 7643
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.021 Score=49.46 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=65.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC-CccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL-EEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~vih 85 (322)
.++++.|+|+.| +|+--++.-...|++|++++++.++.. +....+. .+.+ .|.+ |++.++++.+..|.++|
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kke-ea~~~LG-----Ad~f-v~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKE-EAIKSLG-----ADVF-VDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHH-HHHHhcC-----ccee-EEecCCHHHHHHHHHhhcCcce
Confidence 578999999999 999888888888999999999864322 3333332 1222 3444 77777777776777777
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.+.-+ ...+. ..+++.++.. +++|+++-.
T Consensus 253 ~v~~~---a~~~~-----------~~~~~~lk~~---Gt~V~vg~p 281 (360)
T KOG0023|consen 253 TVSNL---AEHAL-----------EPLLGLLKVN---GTLVLVGLP 281 (360)
T ss_pred eeeec---cccch-----------HHHHHHhhcC---CEEEEEeCc
Confidence 76422 12221 1345555553 478888865
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.013 Score=53.88 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=51.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+.+++|+|.|+ |..|+.+++.|.+.|. ++++..|+..+. +.+.+.. .. +.....+++...+..+|+||
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra--~~La~~~---~~-----~~~~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKA--QKITSAF---RN-----ASAHYLSELPQLIKKADIII 247 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHH--HHHHHHh---cC-----CeEecHHHHHHHhccCCEEE
Confidence 45789999995 9999999999999995 688888875432 2222211 00 12223456677888999999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
++.+.
T Consensus 248 ~aT~a 252 (414)
T PRK13940 248 AAVNV 252 (414)
T ss_pred ECcCC
Confidence 99864
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.015 Score=50.73 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=48.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++++++|.| +|..|++++..|.+.|. +|+++.|+..+. +.+.+.......+ .. +...+++...+.++|+||
T Consensus 123 ~~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka--~~La~~~~~~~~~--~~--~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 123 LAGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKL--SRLVDLGVQVGVI--TR--LEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred cCCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHH--HHHHHHhhhcCcc--ee--ccchhhhhhcccCCCEEE
Confidence 3568999998 69999999999999996 688898876443 2222211100111 11 111123445557899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
|+...
T Consensus 196 naTp~ 200 (282)
T TIGR01809 196 STVPA 200 (282)
T ss_pred ECCCC
Confidence 98754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.023 Score=49.94 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=26.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEe
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVR 40 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r 40 (322)
.+|.|.||||++|.+|++.|.++.+ ++..+..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s 35 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPE 35 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999999999999999998873 5555543
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.018 Score=51.38 Aligned_cols=66 Identities=15% Similarity=0.088 Sum_probs=48.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|.||+.+++.|...|.+|++.+|...... .... .+ ...+++++++++|+|+.
T Consensus 148 L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~~-----~~--------~~~~l~ell~~aDiV~l 210 (333)
T PRK13243 148 VYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEA---EKEL-----GA--------EYRPLEELLRESDFVSL 210 (333)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhh---HHHc-----CC--------EecCHHHHHhhCCEEEE
Confidence 4679999999 699999999999999999999888643211 0000 01 12457788999999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 211 ~lP 213 (333)
T PRK13243 211 HVP 213 (333)
T ss_pred eCC
Confidence 763
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.054 Score=40.32 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=50.9
Q ss_pred cEEEEECCc---chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGAS---GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|+|.|.|++ +-.|..+++.|.+.|++|+.+.-+.... ....-+..+++.-..+|.++-
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlavv 61 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAVV 61 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEEE
Confidence 579999998 7789999999999999999874332111 111123334432356788876
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+.. -.-+..+++.|.+. |++.+++.++
T Consensus 62 ~~~-----------------~~~~~~~v~~~~~~-g~~~v~~~~g 88 (116)
T PF13380_consen 62 CVP-----------------PDKVPEIVDEAAAL-GVKAVWLQPG 88 (116)
T ss_dssp -S------------------HHHHHHHHHHHHHH-T-SEEEE-TT
T ss_pred EcC-----------------HHHHHHHHHHHHHc-CCCEEEEEcc
Confidence 542 22245678888887 8999999888
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.018 Score=51.02 Aligned_cols=36 Identities=36% Similarity=0.401 Sum_probs=32.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.+.+++|+||+|.+|.++++.+...|.+|+++.++.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 356899999999999999999999999999888764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.18 Score=43.91 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=61.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vi 84 (322)
+..+|+|-|.||.+|+.+.+.|.+-|++++. .-++.+... .+ ..+.-+.+++++.+. +|.+|
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~-~V~p~~~~~-----------~v----~G~~~y~sv~dlp~~~~~Dlav 68 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVG-GVTPGKGGT-----------TV----LGLPVFDSVKEAVEETGANASV 68 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEE-EECCCCCcc-----------ee----cCeeccCCHHHHhhccCCCEEE
Confidence 3468999999999999999999999988444 333331110 11 233445667777665 78888
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
-+... ..+..+++.|.+. |++.+|.+|+.
T Consensus 69 i~vpa-----------------~~v~~~l~e~~~~-Gvk~avIis~G 97 (286)
T TIGR01019 69 IFVPA-----------------PFAADAIFEAIDA-GIELIVCITEG 97 (286)
T ss_pred EecCH-----------------HHHHHHHHHHHHC-CCCEEEEECCC
Confidence 66421 1234567777776 89998888875
|
ATP citrate lyases appear to form an outgroup. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.052 Score=49.17 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCC--CCcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGA--TERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~--~~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. ++++++.+.-+..+ +.+ +.+... .-+++.+..
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 457899999 78999999999999995 78888776322111 100 001111 234556666
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.++ .+...++++++|+||.+.. + ...-..+-++|.+. ++ .+|+.+..
T Consensus 119 ~i~-~~~~~~~~~~~DlVid~~D--------n--------~~~r~~in~~~~~~-~i-P~v~~~~~ 165 (370)
T PRK05600 119 RLT-AENAVELLNGVDLVLDGSD--------S--------FATKFLVADAAEIT-GT-PLVWGTVL 165 (370)
T ss_pred ecC-HHHHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-CC-CEEEEEEe
Confidence 664 3456778899999997751 1 12223445667775 53 46666654
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.096 Score=44.34 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=29.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeE-EEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTV-KATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V-~~~~r~~~~ 44 (322)
++|.|.|++|-.|+.+++.+.+.+ .++ -+++|..+.
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~ 40 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL 40 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc
Confidence 689999999999999999999876 564 456666543
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.19 Score=46.82 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=61.5
Q ss_pred CCCCCcEEEEECCc---chhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 4 GEGEEKVVCVTGAS---GFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 4 ~~~~~~~ilVtGat---G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
..+..++|.|.|++ |-+|..+++.|.+.|| +|+.+..+.... ..+.-+..++++-.
T Consensus 3 ~l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~ 63 (447)
T TIGR02717 3 HLFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD 63 (447)
T ss_pred cccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence 34566899999998 6789999999999998 576554322110 12233445555656
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.+|.+|-+.. -..+..+++.|.+. |++.+|.+||.
T Consensus 64 ~~Dlavi~vp-----------------~~~~~~~l~e~~~~-gv~~~vi~s~g 98 (447)
T TIGR02717 64 PVDLAVIVVP-----------------AKYVPQVVEECGEK-GVKGAVVITAG 98 (447)
T ss_pred CCCEEEEecC-----------------HHHHHHHHHHHHhc-CCCEEEEECCC
Confidence 7888875532 12244677888887 89999988875
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.051 Score=49.27 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=47.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|.||+.+++.|..-|.+|++.++...... +......++++++++|+|+.
T Consensus 114 l~gktvGIIG-~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-------------------~~~~~~~l~ell~~aDiV~l 173 (381)
T PRK00257 114 LAERTYGVVG-AGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-------------------GDGDFVSLERILEECDVISL 173 (381)
T ss_pred cCcCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCcccccc-------------------cCccccCHHHHHhhCCEEEE
Confidence 4579999999 799999999999999999998875332110 00123457888999998876
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
....
T Consensus 174 h~Pl 177 (381)
T PRK00257 174 HTPL 177 (381)
T ss_pred eCcC
Confidence 5543
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.019 Score=49.45 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=54.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
..||++.| +|=+|++++-++.+.|.+|+++||-.....-+ .--..+..|++|.++++++++ ++|+||-
T Consensus 12 a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAmq---------VAhrs~Vi~MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 12 ATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ---------VAHRSYVIDMLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred CeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhhh---------hhhheeeeeccCHHHHHHHHHhhCCCeeee
Confidence 36899998 99999999999999999999999976543221 112456789999999999987 5788874
Q ss_pred c
Q 020747 86 T 86 (322)
Q Consensus 86 ~ 86 (322)
-
T Consensus 82 E 82 (394)
T COG0027 82 E 82 (394)
T ss_pred h
Confidence 3
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.065 Score=49.04 Aligned_cols=110 Identities=15% Similarity=0.048 Sum_probs=67.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCCC--CcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGAT--ERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~~--~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. +++++|.+.-+... +.+ +.+.... .+++.+..
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 457999999 88999999999999995 57777654322211 110 0011112 23555555
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~ 137 (322)
.++. +....+++++|+||.+. ++ ...-..+-++|++. + +.+|+.++. +++|.
T Consensus 120 ~i~~-~~~~~~~~~~D~Vvd~~--------d~--------~~~r~~ln~~~~~~-~-~p~v~~~~~-g~~G~ 171 (392)
T PRK07878 120 RLDP-SNAVELFSQYDLILDGT--------DN--------FATRYLVNDAAVLA-G-KPYVWGSIY-RFEGQ 171 (392)
T ss_pred cCCh-hHHHHHHhcCCEEEECC--------CC--------HHHHHHHHHHHHHc-C-CCEEEEEec-cCEEE
Confidence 6654 34567888999999764 11 12223456777776 5 457777766 55543
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.027 Score=49.16 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=47.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCc-Chhhhhh-ccCCC-CcEEEEEccCCCccchHHhhCCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSP-KTEHLRE-LDGAT-ERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-~~~~~~~-~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
.++++++|.|+ |.-+++++..|...|. +|+++.|+.... ..+.+.+ +.... ..+.. .++.+.+.+...+.++|
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV--TDLADQQAFAEALASAD 198 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE--echhhhhhhhhhcccCC
Confidence 35689999995 6669999999999995 788888875311 1122222 11111 11222 22222223444566789
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+|||+..
T Consensus 199 ivINaTp 205 (288)
T PRK12749 199 ILTNGTK 205 (288)
T ss_pred EEEECCC
Confidence 9999763
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.018 Score=51.27 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC---CeEEEEEeC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG---YTVKATVRD 41 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~ 41 (322)
+.++|.|.||||++|..+++.|.++. .++..+...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 34799999999999999999999854 355555433
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.016 Score=56.30 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=55.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
++|+|.| .|-+|+.+++.|.++|+++++++.++... +.+.. .+...+.||.+|++-++++ ++++|.||-+
T Consensus 401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v-----~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 401 PRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHI-----ETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred CcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHH-----HHHHh--cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 6899998 89999999999999999999999876443 22221 2468899999999988765 5678888754
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.1 Score=44.51 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=66.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+|+|.|||+ =|+.|+..|.++|+ |++.+-..-.. +.. ...........|-+.+.+.+.++++ +++.||..
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~--~~~---~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGG--ELL---KPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhH--hhh---ccccCCceEEECCCCCHHHHHHHHHhCCCcEEEEC
Confidence 5899999997 69999999999998 65444332111 111 1112456778888878899999986 79999977
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEE
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~ 127 (322)
. +|+. ..-+.|..++|++. ++..+-|
T Consensus 74 T--------HPfA------~~is~na~~a~~~~-~ipylR~ 99 (249)
T PF02571_consen 74 T--------HPFA------AEISQNAIEACREL-GIPYLRF 99 (249)
T ss_pred C--------CchH------HHHHHHHHHHHhhc-CcceEEE
Confidence 4 3322 23356888999887 7765443
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.024 Score=50.52 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=47.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|.||+.+++.|...|++|++.+|+..... .. +.-..+++.+++++|+|+-
T Consensus 144 l~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--------------~~----~~~~~~l~ell~~aDiVil 204 (330)
T PRK12480 144 VKNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDL--------------DF----LTYKDSVKEAIKDADIISL 204 (330)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhh--------------hh----hhccCCHHHHHhcCCEEEE
Confidence 4578999998 899999999999999999999988753210 00 0112357788999999886
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 205 ~l 206 (330)
T PRK12480 205 HV 206 (330)
T ss_pred eC
Confidence 64
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.03 Score=50.23 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=28.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRD 41 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 41 (322)
++|.|+|+||++|++|++.|.+++ .++..+..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence 379999999999999999998876 588877544
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.033 Score=48.11 Aligned_cols=56 Identities=23% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|+|.|.++.+|+.++..|.++|..|++..++ ..++...++++|+||-
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK----------------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEE
Confidence 568999999999999999999999999999875321 1245667888999998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
.+|.
T Consensus 208 avG~ 211 (285)
T PRK14189 208 AVGK 211 (285)
T ss_pred cCCC
Confidence 8763
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0062 Score=48.08 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=44.9
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC---CCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA---TERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
||.|.| +|-.|.+++..|.++|++|....|++... +.++.-..+ .+.... ...+.-..+++++++++|+||-.
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g~~V~l~~~~~~~~--~~i~~~~~n~~~~~~~~l-~~~i~~t~dl~~a~~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNGHEVTLWGRDEEQI--EEINETRQNPKYLPGIKL-PENIKATTDLEEALEDADIIIIA 76 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCTEEEEEETSCHHHH--HHHHHHTSETTTSTTSBE-ETTEEEESSHHHHHTT-SEEEE-
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCEEEEEeccHHHH--HHHHHhCCCCCCCCCccc-CcccccccCHHHHhCcccEEEec
Confidence 588999 89999999999999999999998875221 122211110 011111 11111124677889999998844
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.024 Score=49.56 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
++|.|.| +|.+|+.++..|+..|++|++.++++...
T Consensus 6 ~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~~ 41 (286)
T PRK07819 6 QRVGVVG-AGQMGAGIAEVCARAGVDVLVFETTEELA 41 (286)
T ss_pred cEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 5899999 59999999999999999999999987553
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.04 Score=48.41 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=47.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|-||+++++.|..-|.+|++.+|+..+. .+.. ...+++++++++|+|+.
T Consensus 120 L~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~------~~~~l~ell~~aDiv~~ 179 (303)
T PRK06436 120 LYNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVND-------------GISS------IYMEPEDIMKKSDFVLI 179 (303)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCccc-------------Cccc------ccCCHHHHHhhCCEEEE
Confidence 4579999999 89999999998888899999998864221 0110 02357888999999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 180 ~lp 182 (303)
T PRK06436 180 SLP 182 (303)
T ss_pred CCC
Confidence 764
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.04 Score=41.37 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=26.8
Q ss_pred EEEEECCcchhHHHHHHHHHHC-CCeEEEEEe
Q 020747 10 VVCVTGASGFVASWLVKLLLQR-GYTVKATVR 40 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r 40 (322)
++.|+|++|.+|+.+++.|.+. ++++.++..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~ 32 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAA 32 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEe
Confidence 4889999999999999999994 788888833
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.023 Score=50.53 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=60.4
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
+++.+|.+-|...............+...-+..++++.. +. +.|++|.++|...-.-
T Consensus 203 ~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~-~~K~~vIvTSfn~~~~------------------ 263 (410)
T PF08732_consen 203 DIKTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNT-GNKKLVIVTSFNNNAI------------------ 263 (410)
T ss_pred hhhhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccC-CCceEEEEEecCcchh------------------
Confidence 345667666654332211112222344444555666655 54 6789999999732210
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
+...+|-.+|...|+-+.....-.=-.++|+|||.+.|....
T Consensus 264 -----s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 264 -----SSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred -----hhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 111569999999999887554321237899999999998655
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.024 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|.| +|-+|+.++..|++.|++|++.+|++.
T Consensus 5 m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 5 MRVAVLG-AGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5899998 899999999999999999999998654
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.027 Score=51.31 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=51.5
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~A 87 (322)
||+|.| +|..|..+++.+.+.|++|++++.++...... .. -..+..|..|++.+.++.+ ++|+|+-..
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~----~a-----d~~~~~~~~d~~~l~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ----VA-----HRSYVINMLDGDALRAVIEREKPDYIVPEI 70 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchhh----hC-----ceEEEcCCCCHHHHHHHHHHhCCCEEEecc
Confidence 589999 69999999999999999999998875433211 11 1445678888888888877 799987543
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.022 Score=50.48 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=31.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
..|+|+|.| +|-||+.++..|.+.|++|+++.|+.
T Consensus 4 ~~m~I~IiG-~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIG-TGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 347899997 89999999999999999999999975
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.024 Score=51.50 Aligned_cols=68 Identities=25% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|-||+.+++.|..-|.+|++.+|...+.. .... .++.-..+++++++.+|+|+.
T Consensus 190 L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~--~~~~------------~g~~~~~~l~ell~~aDvV~l 254 (385)
T PRK07574 190 LEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEE--VEQE------------LGLTYHVSFDSLVSVCDVVTI 254 (385)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchh--hHhh------------cCceecCCHHHHhhcCCEEEE
Confidence 4578999999 799999999999999999999988652211 1000 012223468889999999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 255 ~lP 257 (385)
T PRK07574 255 HCP 257 (385)
T ss_pred cCC
Confidence 763
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.042 Score=47.44 Aligned_cols=56 Identities=23% Similarity=0.144 Sum_probs=46.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|+|+|.+..+|+-|+..|+++|..|++..++. .++....+++|+||.
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT----------------------------KNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence 5689999999999999999999999999998775321 245667788999998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
.+|.
T Consensus 209 avG~ 212 (285)
T PRK10792 209 AVGK 212 (285)
T ss_pred cCCC
Confidence 8875
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=53.05 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
..+++|+|+| +|-+|..+++.|...|. +|++.+|+..+... ....+ + ++..+.+++...+.++|+||
T Consensus 180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~-la~~~---g-------~~~~~~~~~~~~l~~aDvVI 247 (423)
T PRK00045 180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEE-LAEEF---G-------GEAIPLDELPEALAEADIVI 247 (423)
T ss_pred ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH-HHHHc---C-------CcEeeHHHHHHHhccCCEEE
Confidence 4568999998 59999999999999997 78888887543211 11111 1 11222345566778899999
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
.+.+
T Consensus 248 ~aT~ 251 (423)
T PRK00045 248 SSTG 251 (423)
T ss_pred ECCC
Confidence 8865
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.025 Score=51.04 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=49.4
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+|+|.|+ |++|..++..+.+.|++|++++.++..... . .. -..+.+|..|++.+.++.+.+|+|
T Consensus 1 ~igiiG~-gql~~~l~~aa~~lG~~v~~~d~~~~~p~~-~---~a-----d~~~~~~~~d~~~i~~~a~~~dvi 64 (352)
T TIGR01161 1 TVGILGG-GQLGRMLALAARPLGIKVHVLDPDANSPAV-Q---VA-----DHVVLAPFFDPAAIRELAESCDVI 64 (352)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEECCCCCCChh-H---hC-----ceeEeCCCCCHHHHHHHHhhCCEE
Confidence 4889996 799999999999999999999876543221 1 11 134578889999999999999976
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.023 Score=49.90 Aligned_cols=64 Identities=19% Similarity=0.307 Sum_probs=45.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|.| .|.+|+.+++.|.+.|++|++.+|++... +.+.+. .+. -..+.+++++++|+||-+.
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~--~~~~~~-----g~~-------~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAV--AEVIAA-----GAE-------TASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHH--HHHHHC-----CCe-------ecCCHHHHHhcCCEEEEeC
Confidence 5899998 79999999999999999999988865332 111110 111 1134556778899998765
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.02 Score=50.67 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+++|+|.|+ |-+|..+++.|.+.| .+|++++|+..+.. .+.... +. .. .+.+++.+.+.++|+||.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~--~la~~~--g~--~~-----~~~~~~~~~l~~aDvVi~ 244 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAE--ELAKEL--GG--NA-----VPLDELLELLNEADVVIS 244 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHH--HHHHHc--CC--eE-----EeHHHHHHHHhcCCEEEE
Confidence 5689999995 999999999999876 67888888754321 111111 11 11 223456677788999998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+.+.
T Consensus 245 at~~ 248 (311)
T cd05213 245 ATGA 248 (311)
T ss_pred CCCC
Confidence 8653
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.036 Score=52.35 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
|+|.|+| +|.+|+.++..|++.|++|++.++++...
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~~~ 40 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPEAE 40 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 5899997 99999999999999999999999876543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.11 Score=43.74 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=62.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCCC--CcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGAT--ERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~~--~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|++.|. +++++|.+.-...+ +.+ +.+.... .+++.+..
T Consensus 10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 357899999 89999999999999995 67777765322111 000 0011112 23444554
Q ss_pred cCCCccchHHhhC-CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVD-GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~-~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.++ ++....++. ++|+||.+.. |...-..+.+.|++. +. .+|...+.
T Consensus 89 ~i~-~~~~~~l~~~~~D~VvdaiD----------------~~~~k~~L~~~c~~~-~i-p~I~s~g~ 136 (231)
T cd00755 89 FLT-PDNSEDLLGGDPDFVVDAID----------------SIRAKVALIAYCRKR-KI-PVISSMGA 136 (231)
T ss_pred ecC-HhHHHHHhcCCCCEEEEcCC----------------CHHHHHHHHHHHHHh-CC-CEEEEeCC
Confidence 444 344555554 6899997741 122334577888886 53 56555544
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.039 Score=47.68 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.|.+|.+|+.++..|+++|+.|++.. ++. ..+++..+++|+||-
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~---s~t-------------------------~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH---SRT-------------------------RNLAEVARKADILVV 207 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC---CCC-------------------------CCHHHHHhhCCEEEE
Confidence 5689999999999999999999999999998751 111 135667788999998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+.|.
T Consensus 208 avg~ 211 (284)
T PRK14179 208 AIGR 211 (284)
T ss_pred ecCc
Confidence 8764
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=47.68 Aligned_cols=70 Identities=23% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC--CCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR--GYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|+.++|.|.| .|.||+.+++.|.+. ++++.++ +|++.+. +.+.... +-..-..+++++++++|+
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a--~~~a~~~----------g~~~~~~~~eell~~~D~ 70 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH--ADFIWGL----------RRPPPVVPLDQLATHADI 70 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH--HHHHHhc----------CCCcccCCHHHHhcCCCE
Confidence 5568999999 899999999999974 7887755 4433221 1111100 000112356667788999
Q ss_pred EEEccc
Q 020747 83 VFHTAS 88 (322)
Q Consensus 83 vih~A~ 88 (322)
|+-++.
T Consensus 71 Vvi~tp 76 (271)
T PRK13302 71 VVEAAP 76 (271)
T ss_pred EEECCC
Confidence 998874
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.03 Score=38.51 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=30.8
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
+|+|.| +|++|-+++..|.+.|.+|+++.|++.-.
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 578888 89999999999999999999999876543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.063 Score=44.56 Aligned_cols=173 Identities=16% Similarity=0.115 Sum_probs=92.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC---CC--eEEEEEeCCCCcChhhhhhcc-CC-CCcEEEEE-ccCCCccchHHhhCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR---GY--TVKATVRDPNSPKTEHLRELD-GA-TERLHLFK-ANLLEEGSFDSAVDG 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~---g~--~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~~-~Dl~~~~~~~~~~~~ 79 (322)
.-||+||||+|.||.+|+..+.+- |. -++..-.+..++. ..++... .. +.-+.... .+.+ .+-..++++
T Consensus 4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~-~~LegV~mELqD~a~PlL~~Vvat--td~~~afkd 80 (332)
T KOG1496|consen 4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMM-SVLEGVKMELQDCALPLLKGVVAT--TDEVEAFKD 80 (332)
T ss_pred ceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHH-HHHHHHHHHHHhhhhhHHHhhhcc--cChhhhhcc
Confidence 359999999999999999988753 22 2333222222221 1111100 00 00011100 1111 123457788
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCc-cccCCCCCCcc
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDV-VIDETWFSNPV 156 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~-~~~E~~~~~~~ 156 (322)
+|+.|-..+..... .....++...|+.-.+.--.++.+.. .+ +++.++--+. . +. ...+..|.-|.
T Consensus 81 v~~ailvGa~PR~e-GMERkDll~~NvkIfk~Qg~AL~k~A~~~~-KVlVVgNPaN-----T----Nali~~k~ApsIP~ 149 (332)
T KOG1496|consen 81 VDVAILVGAMPRRE-GMERKDLLSANVKIFKSQGAALEKYAKPNV-KVLVVGNPAN-----T----NALILKKFAPSIPE 149 (332)
T ss_pred CcEEEEeccccCcc-cchhhhHHhhcceeehhhhHHHHHhcCCCc-eEEEecCccc-----c----chhHHhhhCCCCch
Confidence 89998766643321 22224677778877766666665541 33 4555553311 1 11 22222322222
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCC
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPF 199 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~ 199 (322)
. +.-+.+++--.+...+++.+.|+++.-+.--.|+|..
T Consensus 150 ---k--Nfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNH 187 (332)
T KOG1496|consen 150 ---K--NFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNH 187 (332)
T ss_pred ---h--cchhhhhhchhhHHHHHHHhhCCchhhcceeEEeccc
Confidence 1 3456677777788888888889888888777777754
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.038 Score=49.02 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|++.|.| .|-||+++++.|..-|.+|++.+|..... .. +..+++++++.+|+|+.
T Consensus 146 l~gktvgIiG-~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-------------~~--------~~~~l~ell~~sDiv~l 203 (317)
T PRK06487 146 LEGKTLGLLG-HGELGGAVARLAEAFGMRVLIGQLPGRPA-------------RP--------DRLPLDELLPQVDALTL 203 (317)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCCcc-------------cc--------cccCHHHHHHhCCEEEE
Confidence 4679999999 89999999999998899999887653210 00 12368889999999886
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 204 ~lPl 207 (317)
T PRK06487 204 HCPL 207 (317)
T ss_pred CCCC
Confidence 6543
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.038 Score=47.98 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.5
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRD 41 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~ 41 (322)
+|+|.| .|.+|+++++.|+..|. +++++|.+
T Consensus 1 kVLIvG-aGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLG-AGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 588998 78999999999999995 56666653
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.017 Score=53.25 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
..+++|+|+|+ |-+|..+++.|.+.| .+|++.+|+..+.. .....+. . ..+ +.+++.+++.++|+||
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~-~la~~~g---~--~~i-----~~~~l~~~l~~aDvVi 245 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAE-DLAKELG---G--EAV-----KFEDLEEYLAEADIVI 245 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHcC---C--eEe-----eHHHHHHHHhhCCEEE
Confidence 45689999995 999999999999999 78999988764321 1111111 1 111 2235667788999999
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
.+.+
T Consensus 246 ~aT~ 249 (417)
T TIGR01035 246 SSTG 249 (417)
T ss_pred ECCC
Confidence 8864
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.042 Score=49.01 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=26.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHH-CCCe---EEEEEeC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQ-RGYT---VKATVRD 41 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~-~g~~---V~~~~r~ 41 (322)
.++|.|.||||++|+.+++.|.+ ..++ +..+...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~ 42 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK 42 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc
Confidence 46899999999999999999995 5666 4445433
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.1 Score=47.66 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhh---------------hhccCC--CCcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHL---------------RELDGA--TERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~---------------~~~~~~--~~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. +++++|.+.-+... +.+ +.+... ..+++.+..
T Consensus 37 ~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 357899999 78999999999999995 56777664322211 111 001111 234556666
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL 136 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~ 136 (322)
.++. +...++++++|+||.+.. + ...-..+-++|.+. + +.+|+.+.. ..+|
T Consensus 116 ~~~~-~~~~~~~~~~D~Vvd~~d--------~--------~~~r~~ln~~~~~~-~-~p~v~~~~~-g~~g 166 (390)
T PRK07411 116 RLSS-ENALDILAPYDVVVDGTD--------N--------FPTRYLVNDACVLL-N-KPNVYGSIF-RFEG 166 (390)
T ss_pred ccCH-HhHHHHHhCCCEEEECCC--------C--------HHHHHHHHHHHHHc-C-CCEEEEEEc-cCEE
Confidence 6654 345678889999997752 1 11122344666665 4 456666655 4444
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.16 Score=43.78 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=62.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcCh---hhh---------------hhccCCCC--cEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKT---EHL---------------RELDGATE--RLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~~~---------------~~~~~~~~--~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..| -++++++.+.-...+ +.+ +.+...++ +++.+..
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 457899998 8899999999999999 578888765322111 000 00111122 3444432
Q ss_pred cCCCccchHHhhC-CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVD-GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~-~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
..+++..+.++. ++|+||.+... +..-..+.+.|++. +. .+|..+++
T Consensus 108 -~i~~e~~~~ll~~~~D~VIdaiD~----------------~~~k~~L~~~c~~~-~i-p~I~~gGa 155 (268)
T PRK15116 108 -FITPDNVAEYMSAGFSYVIDAIDS----------------VRPKAALIAYCRRN-KI-PLVTTGGA 155 (268)
T ss_pred -ccChhhHHHHhcCCCCEEEEcCCC----------------HHHHHHHHHHHHHc-CC-CEEEECCc
Confidence 223455666664 68999977521 12233577888886 53 56666554
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.032 Score=47.45 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=40.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC---e-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY---T-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~---~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.++|.|+| +|.+|++++..|++.|. + +++..|+... ..+.+... ..+.. ..+.+++++++|+|
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~----~~~~~~~~-~~~~~-------~~~~~~~~~~~DiV 70 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVE----KLDQLQAR-YNVST-------TTDWKQHVTSVDTI 70 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHH----HHHHHHHH-cCcEE-------eCChHHHHhcCCEE
Confidence 47899999 79999999999998873 2 5555553211 11111110 01211 12345667889999
Q ss_pred EEcc
Q 020747 84 FHTA 87 (322)
Q Consensus 84 ih~A 87 (322)
|.+.
T Consensus 71 iiav 74 (245)
T PRK07634 71 VLAM 74 (245)
T ss_pred EEec
Confidence 8764
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.036 Score=48.25 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=30.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|.| .|.+|..++..|.+.|++|++.+|++.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3699998 899999999999999999999998753
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.026 Score=51.74 Aligned_cols=67 Identities=22% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+.+++|+|+| .|.||+.++..|...|.+|++.++++.+... . .. ..++.. .++++++++|+||.
T Consensus 210 l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~-A----~~--~G~~v~--------~l~eal~~aDVVI~ 273 (425)
T PRK05476 210 IAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQ-A----AM--DGFRVM--------TMEEAAELGDIFVT 273 (425)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHH-H----Hh--cCCEec--------CHHHHHhCCCEEEE
Confidence 4679999999 5999999999999999999999887644211 0 00 112211 24567789999997
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+.|
T Consensus 274 aTG 276 (425)
T PRK05476 274 ATG 276 (425)
T ss_pred CCC
Confidence 653
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.092 Score=51.54 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhh-----------------hccCC--CCcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLR-----------------ELDGA--TERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~-----------------~~~~~--~~~~~~~~~ 65 (322)
+..+|+|.|. | +|++++..|+..|. ++++++.+.-+.++.... .+... .-+++.+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4579999998 8 99999999999994 787777653222110000 00011 235666777
Q ss_pred cCCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.++ ++.++++++++|+||.|. ++ +..=..+-++|.+. + ..+|+-|+.
T Consensus 184 ~i~-~~n~~~~l~~~DlVvD~~--------D~--------~~~R~~ln~~a~~~-~-iP~i~~~~~ 230 (722)
T PRK07877 184 GLT-EDNVDAFLDGLDVVVEEC--------DS--------LDVKVLLREAARAR-R-IPVLMATSD 230 (722)
T ss_pred cCC-HHHHHHHhcCCCEEEECC--------CC--------HHHHHHHHHHHHHc-C-CCEEEEcCC
Confidence 776 567888999999999875 11 22223445667775 5 356666653
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.026 Score=51.71 Aligned_cols=37 Identities=30% Similarity=0.208 Sum_probs=33.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
+.|+|||||+...+|..+++.|.+.|++|++++..+.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3589999999999999999999999999999987653
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.034 Score=48.42 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=43.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC----CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG----YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.|+|.++| +|.+|+++++.|++.| ++|++.+|++.+.. +.+... ..++.. .+..++++++|+|
T Consensus 3 ~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~-~~l~~~----~g~~~~-------~~~~e~~~~aDvV 69 (279)
T PRK07679 3 IQNISFLG-AGSIAEAIIGGLLHANVVKGEQITVSNRSNETRL-QELHQK----YGVKGT-------HNKKELLTDANIL 69 (279)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHH-HHHHHh----cCceEe-------CCHHHHHhcCCEE
Confidence 36899998 9999999999999998 78888877542211 111110 012211 2334566788999
Q ss_pred EEcc
Q 020747 84 FHTA 87 (322)
Q Consensus 84 ih~A 87 (322)
|-+.
T Consensus 70 ilav 73 (279)
T PRK07679 70 FLAM 73 (279)
T ss_pred EEEe
Confidence 8664
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.053 Score=48.18 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++.+|+|+||+|.+|..++..+...|.+|++++++.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~ 174 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE 174 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4579999999999999999888889999998887653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.019 Score=50.99 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=57.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCcc-chHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEG-SFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~d~vih 85 (322)
+++||+.| +||+.+-++..|.+++ .+|++..|...+. +++.. +..++.+..|+++++ .+++.++..|.|+-
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~-----~~~~~-~~~~~av~ldv~~~~~~L~~~v~~~D~viS 74 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDA-----EALVK-GINIKAVSLDVADEELALRKEVKPLDLVIS 74 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHH-----HHHhc-CCCccceEEEccchHHHHHhhhcccceeee
Confidence 47899999 9999999999999886 5777777765433 22222 344889999999988 88999999999886
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+-
T Consensus 75 Ll 76 (445)
T KOG0172|consen 75 LL 76 (445)
T ss_pred ec
Confidence 65
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.053 Score=47.44 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=25.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATV 39 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 39 (322)
.+|.|.||+||.|.+|++.|.... .++..+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~ 33 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIA 33 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEe
Confidence 479999999999999999999886 3555543
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.052 Score=49.39 Aligned_cols=82 Identities=9% Similarity=0.006 Sum_probs=49.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHH-HCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLL-QRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
..+++|.|.| .|-||+++++.|. .-|.+|++.++.........................++....+++++++++|+|+
T Consensus 163 L~gktvGIiG-~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~ 241 (386)
T PLN02306 163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVIS 241 (386)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEE
Confidence 4679999999 9999999999986 6789999998765321100000000000000000011222347899999999988
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
..+.
T Consensus 242 lh~P 245 (386)
T PLN02306 242 LHPV 245 (386)
T ss_pred EeCC
Confidence 6553
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.065 Score=50.52 Aligned_cols=75 Identities=15% Similarity=0.007 Sum_probs=49.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++++|+|+| .|.+|.++++.|.++|++|++++++...........+.. ..++++.++-.. ...++|.||.
T Consensus 14 ~~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~--~gv~~~~~~~~~------~~~~~D~Vv~ 84 (480)
T PRK01438 14 WQGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEA--LGATVRLGPGPT------LPEDTDLVVT 84 (480)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHH--cCCEEEECCCcc------ccCCCCEEEE
Confidence 4568999999 588999999999999999999986643222111122221 235555554221 2346899998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
..|.
T Consensus 85 s~Gi 88 (480)
T PRK01438 85 SPGW 88 (480)
T ss_pred CCCc
Confidence 8775
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.059 Score=46.56 Aligned_cols=57 Identities=25% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+|+|+|.|.+..+|+.++..|+++|..|++..... .++...++++|+||
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV 205 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT----------------------------KDLSFYTQNADIVC 205 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEE
Confidence 35689999999999999999999999999988763211 23456778899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
-++|.
T Consensus 206 ~AvG~ 210 (285)
T PRK14191 206 VGVGK 210 (285)
T ss_pred EecCC
Confidence 77764
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.068 Score=46.20 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|+|+|.+..+|+-++..|.++|..|++..... .++.+..+++|+||.
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT----------------------------DDLKKYTLDADILVV 213 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEE
Confidence 5689999999999999999999999999987764221 235667788999998
Q ss_pred cccCc
Q 020747 86 TASPV 90 (322)
Q Consensus 86 ~A~~~ 90 (322)
++|..
T Consensus 214 AvG~p 218 (287)
T PRK14176 214 ATGVK 218 (287)
T ss_pred ccCCc
Confidence 88753
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.045 Score=45.61 Aligned_cols=35 Identities=34% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r 40 (322)
.+++++|.|.| .|.+|+++++.|.+.|..|+++.-
T Consensus 20 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 20 SLEGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEEc
Confidence 35679999999 899999999999999987776643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 322 | ||||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 7e-59 | ||
| 2rh8_A | 338 | Structure Of Apo Anthocyanidin Reductase From Vitis | 1e-51 | ||
| 2p4h_X | 322 | Crystal Structure Of Vestitone Reductase From Alfal | 4e-39 | ||
| 1y1p_A | 342 | X-Ray Structure Of Aldehyde Reductase With Nadph Le | 5e-27 | ||
| 1ujm_A | 342 | Crystal Structure Of Aldehyde Reductase 2 From Spor | 7e-25 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-06 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-06 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 6e-06 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-05 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 4e-05 | ||
| 3dhn_A | 227 | Crystal Structure Of The Putative Epimerase Q89z24_ | 9e-05 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 9e-05 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 2e-04 |
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338 | Back alignment and structure |
|
| >pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322 | Back alignment and structure |
|
| >pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph Length = 342 | Back alignment and structure |
|
| >pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 Length = 342 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Consortium Target Btr310 Length = 227 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 437 bits (1125), Expect = e-155
Identities = 128/330 (38%), Positives = 186/330 (56%), Gaps = 15/330 (4%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERL 60
M + + VCVTGASGF+ SWLV LL+RGYTV+ATVRDP + K +HL +L A L
Sbjct: 1 MGSQS--ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHL 58
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
L+KA+L +EGSFD A+ GC GVFH A+P+ F S +P+ +++ P + G L +++SCA
Sbjct: 59 TLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAK 118
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE---WYSLAKTLAEEAAW 177
+++R+V TSS G + + E V DE+ +S+ C+ K Y ++KTLAE+AAW
Sbjct: 119 TVRRLVFTSSAGTVNIQE---HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAW 175
Query: 178 KFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI---FVEIRDVV 234
K+AKEN ID + I P V+GPF + L+ I G+++ FV + D+
Sbjct: 176 KYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLC 235
Query: 235 YAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLL--RSGKLEEKYQPTIKVSQE 292
AHI E PKA GRY+ + D+ K LRE YP K ++ ++ S +
Sbjct: 236 NAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSK 295
Query: 293 RAKSLGINFT-PWEVGVRGCIESLMEKGFL 321
+ LG F E G +++ KG L
Sbjct: 296 KLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 425 bits (1094), Expect = e-150
Identities = 116/335 (34%), Positives = 177/335 (52%), Gaps = 18/335 (5%)
Query: 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLH 61
+K CV G +GFVAS LVKLLLQ+GY V TVRDP++ K HL EL L
Sbjct: 4 QHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQEL-GDLK 62
Query: 62 LFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
+F+A+L +E SF++ + GCD VFH A+PV F S++P+ D++ PA+ G +NV+++C + S
Sbjct: 63 IFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKS 122
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE---WYSLAKTLAEEAAWK 178
+KRV+LTSS A+ +N+ +V+DE +++ K Y +KTLAE+AAWK
Sbjct: 123 VKRVILTSSAAAVTINQLD-GTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWK 181
Query: 179 FAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA----------FPYIFV 228
FA+EN IDL+ + P + G + + ++LI G++
Sbjct: 182 FAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIA 241
Query: 229 EIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTL-LRSGKLEEKYQPTI 287
+ DV AHI E ASGRY+ + ++ KFL + YP + + + + +
Sbjct: 242 HVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKL 301
Query: 288 KVSQERAKSLGINFT-PWEVGVRGCIESLMEKGFL 321
+S E+ G +F E +E KG L
Sbjct: 302 IISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 420 bits (1083), Expect = e-149
Identities = 104/324 (32%), Positives = 161/324 (49%), Gaps = 14/324 (4%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP--NSPKTEHLRELDGATERLHLFKAN 66
VCVTG +GF+ SW++K LL+ GY+V T+R L L GA+E+LH F A+
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L SF +A++GC G+FHTASP+ F P+ + V G L +L++C ++KR +
Sbjct: 62 LSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFI 121
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW---YSLAKTLAEEAAWKFAKEN 183
TSS A+ N V+DE+ +S+ L + K + Y+++KTLAE+A +F ++N
Sbjct: 122 YTSSGSAVSFNG---KDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQN 178
Query: 184 GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA--FPYIFVEIRDVVYAHIRAL 241
GID+V + ++G F P L E L L+ G + + V + DV AHI L
Sbjct: 179 GIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLL 238
Query: 242 EVPKASGRYLLAGSVAQHSDILKFLREHYPTL---LRSGKLEEKYQPTIKVSQERAKSLG 298
E GRY + + ++ + L YP E K ++ ++ G
Sbjct: 239 ENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAG 298
Query: 299 INFT-PWEVGVRGCIESLMEKGFL 321
+F E I+ EKG+L
Sbjct: 299 FDFKYTIEDMFDDAIQCCKEKGYL 322
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 358 bits (920), Expect = e-124
Identities = 100/339 (29%), Positives = 151/339 (44%), Gaps = 28/339 (8%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERL 60
+ E +V VTGA+GFVAS +V+ LL+ GY V+ T R + +
Sbjct: 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFE 64
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
++L++G++D + G GV H AS V F N ++V PA+ GTLN LR+ A
Sbjct: 65 TAVVEDMLKQGAYDEVIKGAAGVAHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATP 122
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS---------NPVLCKENKEW-YSLAKT 170
S+KR VLTSS + L P + +DE ++ P + W Y+ +KT
Sbjct: 123 SVKRFVLTSSTVSA-LIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKT 181
Query: 171 LAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILNFG--AEVILNLINGDQSFAFPYI 226
AE AAWKF EN L A+ P IG F P G + +++L NG+ S A +
Sbjct: 182 EAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALM 241
Query: 227 ----FVEIRDVVYAHIRALEVPKASG-RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEE 281
+V D+ H+ L +P+ R + +L R+ YP+ +
Sbjct: 242 PPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD 301
Query: 282 KYQPTIKV----SQERAKSLGI-NFTPWEVGVRGCIESL 315
+ Q K S E KSLG + E ++ + S
Sbjct: 302 QGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-71
Identities = 62/345 (17%), Positives = 119/345 (34%), Gaps = 52/345 (15%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V GA+G + + + G+ + R + + + L L+ A +L+
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS--QIQRLAYLE-----PECRVAEMLDH 68
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
+ A+ G DGV +A Q + V A+ T +C + + R++ S
Sbjct: 69 AGLERALRGLDGVIFSAGYYPSRPRRWQ-EEVASALGQTNPFYAACLQ-ARVPRILYVGS 126
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
AM + E F + + ++ Y L K +E A + A+ G+ +V
Sbjct: 127 AYAM----PRHPQGLPGHEGLFYDSLPSGKS--SYVLCKWALDEQAREQARN-GLPVVIG 179
Query: 191 HPGTVIGP-FFQPILNFGAEVILNLINGDQSFAFPYI--FVEIRDVVYAHIRALEVPKAS 247
PG V+G P VI + NG+ + ++ + + ALE +
Sbjct: 180 IPGMVLGELDIGPTT---GRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIG 236
Query: 248 GRYLLAGSVAQHSDILKFLREH----------YPTLLRSGKLEEKY------QPTI---- 287
RYLL G + +D+ + + E L P +
Sbjct: 237 ERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETA 296
Query: 288 --------KVSQERAKS-LG-INFTPWEVGVRGCIESLMEKGFLS 322
+ +A+ LG + T + + I+ + G+ +
Sbjct: 297 IEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNGYFN 341
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 4e-69
Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 34/255 (13%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GASGFV S L+ L RG+ V A VR P K E+ E L + KA++
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--------EHLKVKKADVS 56
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
G D V +P +NP DI D + L ++ K + R ++
Sbjct: 57 SLDEVCEVCKGADAVISAFNPG---WNNP--DIYDETIKVYLTIIDGVKK-AGVNRFLMV 110
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
G++ + P + + ++ + + K L E KE ID V
Sbjct: 111 GGAGSL-----FIAPGLRLMDS-------GEVPENILPGVKALGEFYLNFLMKEKEIDWV 158
Query: 189 AIHPGTVIGPFFQP-ILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKAS 247
P + P + G + ++ I G+ + + D A I LE PK
Sbjct: 159 FFSPAADMRPGVRTGRYRLGKDDMIVDIVGNS-------HISVEDYAAAMIDELEHPKHH 211
Query: 248 GRYLLAGSVAQHSDI 262
G + H
Sbjct: 212 QERFTIGYLEHHHHH 226
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-26
Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 24/190 (12%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTGA+G + + + L ++ P LD A + +L
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLADLSP----------LDPAGPNEECVQCDLA 53
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + ++ V GCDG+ H + + P I+ ++G N+ A+ H R+V
Sbjct: 54 DANAVNAMVAGCDGIVHLGGISV---EKPFEQILQGNIIGLYNLYE-AARAHGQPRIVFA 109
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
SS + + + P Y ++K E A + + G +
Sbjct: 110 SSNHTIGYYP----QTERLGPDVPARPDGL------YGVSKCFGENLARMYFDKFGQETA 159
Query: 189 AIHPGTVIGP 198
+ G+
Sbjct: 160 LVRIGSCTPE 169
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-25
Identities = 52/296 (17%), Positives = 105/296 (35%), Gaps = 47/296 (15%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG+SG + + LV L ++ D T + ++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD----------TGGIKFITLDVSN 50
Query: 70 EGSFDSAVD--GCDGVFHTASPVIFLS-DNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
D AV+ D +FH A + +P + GT N+L AK H +++VV
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALA-YKVNMNGTYNILE-AAKQHRVEKVV 108
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+ S+IG P TP + + P + + + K AE + ++ G+D
Sbjct: 109 IPSTIGVF----GPETPKNKVPSITITRP------RTMFGVTKIAAELLGQYYYEKFGLD 158
Query: 187 LVAIHPGTVIGPFFQP-------ILNFGAEVILN---LINGDQSFAFPYIFVEIRDVVYA 236
+ ++ +I +P + + + A P +++ D + A
Sbjct: 159 VRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMP--DALKA 216
Query: 237 HIRALEVPKASGR----YLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIK 288
+ E + Y + S++ ++E P + E +Y+ +
Sbjct: 217 LVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIP------EFEIEYKEDFR 266
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 4e-25
Identities = 42/245 (17%), Positives = 78/245 (31%), Gaps = 49/245 (20%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
M++ +++ VTGA+G V S + L + V+ + H
Sbjct: 1 MLN-----RLL-VTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEE--------- 45
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
+ +L + + V CDG+ H + + P DI+ ++G N+ +
Sbjct: 46 -IVACDLADAQAVHDLVKDCDGIIHLGGVSV---ERPWNDILQANIIGAYNLYEAARN-L 100
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
R+V SS + ID P Y L+K E+ A +
Sbjct: 101 GKPRIVFASSNHTIGYYPR----TTRIDTEVPRRPD------SLYGLSKCFGEDLASLYY 150
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRA 240
+ I+ + I G+ + ++ + D + RA
Sbjct: 151 HKFDIETLNIRIGSCFPK-------------------PKDARMMATWLSVDDFMRLMKRA 191
Query: 241 LEVPK 245
PK
Sbjct: 192 FVAPK 196
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 5e-25
Identities = 42/263 (15%), Positives = 82/263 (31%), Gaps = 52/263 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL-LE 69
+ + G++G V L+K L Y + A R E + + + ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKV-----EQVPQYNNVK----AVHFDVDWT 53
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
+ G D + + + S VD + G + ++++ K +KR +L S
Sbjct: 54 PEEMAKQLHGMDAIINVSG-----SGGKSLLKVD--LYGAVKLMQAAEK-AEVKRFILLS 105
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
+I + + + Y +AK A+ KE +D
Sbjct: 106 TIFS-----LQPEKWIGAGFDALKD----------YYIAKHFADLYL---TKETNLDYTI 147
Query: 190 IHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGR 249
I PG + +++ EV I DV + + G+
Sbjct: 148 IQPGALTEEEATGLIDINDEVS--------------ASNTIGDVADTIKELVMTDHSIGK 193
Query: 250 Y--LLAGSVAQHSDILKFLREHY 270
+ G A + L H+
Sbjct: 194 VISMHNGKTAIKEALESLLEHHH 216
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-22
Identities = 52/240 (21%), Positives = 87/240 (36%), Gaps = 48/240 (20%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V V GA+G VA +L+ L +G+ A VR+ + LRE GA++ + ANL E
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEE--QGPELRER-GASD---IVVANLEE- 76
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
F A D V A + + ++D + G + ++ K IKR ++ SS
Sbjct: 77 -DFSHAFASIDAVVFAAG-SGPHTGADKTILID--LWGAIKTIQEAEK-RGIKRFIMVSS 131
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
+G +P N Y +AK LA++ K + +D +
Sbjct: 132 VGT-------------------VDPDQGPMNMRHYLVAKRLADDE----LKRSSLDYTIV 168
Query: 191 HPGTVI-GPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGR 249
PG + + ++ S I DV ++ G+
Sbjct: 169 RPGPLSNEESTGKV----------TVSPHFSEITRSITRH--DVAKVIAELVDQQHTIGK 216
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 4e-22
Identities = 31/246 (12%), Positives = 81/246 (32%), Gaps = 38/246 (15%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ + GA+G S +++ RG+ V A VR+ + + +++ + ++ +
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK--------ITQTHKDINILQKDIFDL 54
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
S + + V D + V +++ R+++
Sbjct: 55 TL--SDLSDQNVVVDAYGIS--------PDEAEKHVTSLDHLIS-VLNGTVSPRLLVVGG 103
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
++ + + +++ +Y A+ A++ + + I
Sbjct: 104 AASL---QIDEDGNTLLESKGLREA-------PYYPTARAQAKQLEHLKSHQAEFSWTYI 153
Query: 191 HPGTVIGPF-FQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG- 248
P + P G + +L +G+ F+ + D A + +E P
Sbjct: 154 SPSAMFEPGERTGDYQIGKDHLLFGSDGNS-------FISMEDYAIAVLDEIERPNHLNE 206
Query: 249 RYLLAG 254
+ +AG
Sbjct: 207 HFTVAG 212
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 5e-22
Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 47/239 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ + GA+G + +Q GY V VRD L H+ ++L+
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS-----SRLPSEGPR--PAHVVVGDVLQA 58
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
D V G D V ++ V G N++ K H + +VV +S
Sbjct: 59 ADVDKTVAGQDAVIVLLGT----RNDLSPTTVMSE--GARNIVA-AMKAHGVDKVVACTS 111
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
L + P + + + + +E+G+ VA+
Sbjct: 112 AFL--LWDPTKVPPRL----------------QAVTDDHIRMHKV----LRESGLKYVAV 149
Query: 191 HPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGR 249
P ++G P + D+ + +R L + G
Sbjct: 150 MPPH----IGD---QPLTGAYTVTLDGRG----PSRVISKHDLGHFMLRCLTTDEYDGH 197
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 9e-22
Identities = 47/267 (17%), Positives = 75/267 (28%), Gaps = 64/267 (23%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKA-----TVRDPNSPKTEHLRELDGA 56
M + + +TG +GF+ L + L+ G V T E
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVL 60
Query: 57 TERLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA-----VMGTLN 111
LEE + V+H AS + P V +
Sbjct: 61 E----------LEER----DLSDVRLVYHLASHK-----SVPRSFKQPLDYLDNVDSGRH 101
Query: 112 VLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVV-IDETWFSNPVLCKENKEWYSLAKT 170
+L + +VV+ S+ E D + E +P Y+ +K
Sbjct: 102 LLA-LCTSVGVPKVVVGST------CEVYGQADTLPTPEDSPLSPRSP------YAASKV 148
Query: 171 LAEEAAWKFAKENGIDLVAI-----------HPGTVIGPFFQPILNFGAEVILNLINGD- 218
E A + + V I P ++ +L E+ + GD
Sbjct: 149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLT-RNELP---VEGDG 204
Query: 219 -QSFAFPYIFVEIRDVVYAHIRALEVP 244
Q F Y I DVV + P
Sbjct: 205 EQRRDFTY----ITDVVDKLVALANRP 227
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 2e-21
Identities = 52/275 (18%), Positives = 86/275 (31%), Gaps = 58/275 (21%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
V VTGASG + K L + + K VR + ++ G + +F +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA-----QGKEKIGGEAD---VFIGD 56
Query: 67 LLEEGSFDSAVDGCDGVFHTAS----------------PVIFLSDNPQADIVDPAVMGTL 110
+ + S + A G D + S P D + VD +G
Sbjct: 57 ITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVD--WIGQK 114
Query: 111 NVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKT 170
N + AKV +K +V+ S+G PD +++ N + K
Sbjct: 115 NQID-AAKVAGVKHIVVVGSMGG-------TNPDHPLNKLGNGN----------ILVWKR 156
Query: 171 LAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230
AE+ ++G I G ++ D+ V
Sbjct: 157 KAEQY----LADSGTPYTIIRAGG----LLDKEGGVRELLVG---KDDELLQTDTKTVPR 205
Query: 231 RDVVYAHIRALEVPKASGR-YLLAGSVAQHSDILK 264
DV I+AL +A + + L S K
Sbjct: 206 ADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTK 240
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 9e-21
Identities = 67/348 (19%), Positives = 115/348 (33%), Gaps = 72/348 (20%)
Query: 1 MMSG--------EGEEKVVCVTGASGFVASWLVKLLLQRGYTVK-----ATVRDPNSPKT 47
MMS + KV +TG +GF+ S L++ LL+ V AT N +
Sbjct: 12 MMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEV 71
Query: 48 EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA-SPVIFLS-DNPQADIVDPA 105
L + ++ ++A G D V H A + S ++P
Sbjct: 72 RSLVSEKQW-SNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSN-ATN 129
Query: 106 VMGTLNVLRSCAKVHSIKRVVLTSS---IGAMLLNETPMTPDVVIDETWFSNPV-LCKEN 161
+ G LN+L + ++ +S G P + E P+
Sbjct: 130 IDGFLNMLIAARD-AKVQSFTYAASSSTYG--------DHPGLPKVEDTIGKPLSP---- 176
Query: 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGP--------------FFQPILNFG 207
Y++ K + E A F++ G + + V G + ++ G
Sbjct: 177 ---YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ-G 232
Query: 208 AEVILNLINGD--QSFAFPYIFVEIRDVVYAHIRALEVP-KASGRYLLAGSVAQHS--DI 262
+V INGD S F Y I + V A++ A A + + S +
Sbjct: 233 DDVY---INGDGETSRDFCY----IENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQL 285
Query: 263 LKFLREHYPTLLRSGKLEEKYQPT----IKVSQ---ERAKSLGINFTP 303
LR+ S E Y+ ++ S +A L + + P
Sbjct: 286 FFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKL-LGYAP 332
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 3e-20
Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 58/258 (22%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ ++V+ + G T + K + E + L +L+
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPII-LTRSIGNKAINDYEYRVSDYTL----EDLIN- 58
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSCAKVHSIKR 124
++ D V H A+ + T N+ ++I
Sbjct: 59 -----QLNDVDAVVHLAA---------TRGSQGKISEFHDNEILTQNLYD-ACYENNISN 103
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
+V S+ ++ P +E P L Y ++K E ++++ G
Sbjct: 104 IVYAST--ISAYSDETSLP---WNEKELPLPDLM------YGVSKLACEHIGNIYSRKKG 152
Query: 185 IDLVAIHPGTVIGP----------FFQPILNFGAEVILNLINGD--QSFAFPYIFVEIRD 232
+ + + + G FF+ + G ++ ++ + F ++ + D
Sbjct: 153 LCIKNLRFAHLYGFNEKNNYMINRFFRQAFH-GEQLT---LHANSVAKREF--LYAK--D 204
Query: 233 VVYAHIRALEVPKASGRY 250
+ I AL+ K SG +
Sbjct: 205 AAKSVIYALKQEKVSGTF 222
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 4e-20
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 46/253 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV L++ GY V V D S + ++ L +L +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV--VVVDNLS--SGRREFVN---PSAELHVRDLKDY 55
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSCAKVHSIKR 124
D VFH A+ + +P V+ T NVL A+ ++
Sbjct: 56 SWGAGI--KGDVVFHFAANP-----EVRLSTTEPIVHFNENVVATFNVLE-WARQTGVRT 107
Query: 125 VVLTSSI---GAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
VV SS G + + P E P+ Y AK E +A+
Sbjct: 108 VVFASSSTVYG-----DADVIP---TPEEEPYKPISV------YGAAKAAGEVMCATYAR 153
Query: 182 ENGIDLVAIHPGTVIGPFFQP--ILNFGAEVILN----LINGDQSFAFPYIFVEIRDVVY 235
G+ +A+ V+GP + I +F ++ N + GD + Y++V D V
Sbjct: 154 LFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVR--DAVE 211
Query: 236 AHIRALEVPKASG 248
A + A + +
Sbjct: 212 ATLAAWKKFEEMD 224
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-19
Identities = 58/280 (20%), Positives = 91/280 (32%), Gaps = 51/280 (18%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
M + + V V G +GFV S LVK LL+ G + V D + + +
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVDNLL--SAEKINVPDH-PAV 80
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLR 114
+ ++ ++ S D D VFH A+ Q+ I DP + TL +
Sbjct: 81 RFSETSITDDALLASLQDEYDYVFHLATYH-----GNQSSIHDPLADHENNTLTTLKLYE 135
Query: 115 SCAKVHSIKRVVLTSS---IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTL 171
+K+VV +++ I ++ T + D N YS++K
Sbjct: 136 RLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEET--DIVSLHNNDSP------YSMSKIF 187
Query: 172 AEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG--------AEVILNLI-------- 215
E + + K++ + V V GP V I
Sbjct: 188 GEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMP 247
Query: 216 -----NGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRY 250
G + F IFVE DV I G Y
Sbjct: 248 LPLENGGVATRDF--IFVE--DVANGLIACAADGTPGGVY 283
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 48/258 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
++ VTG +GF+ S +V L + + V D S + + ++ E L KA+L
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSE-SNEI--VVIDNLS--SGNEEFVN---EAARLVKADLA 53
Query: 69 EEGSFDSAVDGCDGVFHTA-SPVIFLSDNPQADIVDPA------VMGTLNVLRSCAKVHS 121
+ + G + V+H A +P + + +P V+ T +L + K
Sbjct: 54 AD-DIKDYLKGAEEVWHIAANPDVRIG------AENPDEIYRNNVLATYRLLEAMRK-AG 105
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
+ R+V TS+ + + E + P E + ++P+ + Y +K E +
Sbjct: 106 VSRIVFTST--STVYGEAKVIP---TPEDYPTHPI----SL--YGASKLACEALIESYCH 154
Query: 182 ENGIDLVAIHPGTVIGP---------FFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232
+ VIG F + E+ I G+ YI++ D
Sbjct: 155 TFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELE---ILGNGEQNKSYIYIS--D 209
Query: 233 VVYAHIRALEVPKASGRY 250
V A + L + +
Sbjct: 210 CVDAMLFGLRGDERVNIF 227
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-18
Identities = 54/256 (21%), Positives = 93/256 (36%), Gaps = 37/256 (14%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + +TGA GF+AS + + L G+ V D EH+ E E
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHEGHYV--IASDWKKN--EHMTEDMFCDE---FHL 78
Query: 65 ANLLEEGSFDSAVDGCDGVFHTA---SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
+L + +G D VF+ A + F+ N + I+ M + N++ A+++
Sbjct: 79 VDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNH-SVIMYNNTMISFNMIE-AARING 136
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
IKR SS + + V + + P E ++ + L K EE + K
Sbjct: 137 IKRFFYASSA-CIYPEFKQLETTNVSLKESDAWPA---EPQDAFGLEKLATEELCKHYNK 192
Query: 182 ENGIDLVAIHPGTVIGPFFQPILNFGAE-VILNLI--------------NGDQSFAFPYI 226
+ GI+ + GPF G E +G Q+ +F +
Sbjct: 193 DFGIECRIGRFHNIYGPFGTW--KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTF- 249
Query: 227 FVEIRDVVYAHIRALE 242
I + V +R +
Sbjct: 250 ---IDECVEGVLRLTK 262
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 3e-18
Identities = 37/243 (15%), Positives = 64/243 (26%), Gaps = 41/243 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ V GA+G S +V +RG+ V A VRDP + + GAT
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDP-----QKAADRLGATVAT----LVKEPL 53
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
++ +D D V S + L S + V + S
Sbjct: 54 VLTEADLDSVDAVVDALSV----PWGSGRGYLHLDFATH---LVSLLRNSDTLAVFILGS 106
Query: 131 IGAML----LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+ P+ + W+ ++
Sbjct: 107 ASLAMPGADHPMILDFPESAASQPWYD--------------GALYQYYEYQFLQMNANVN 152
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKA 246
+ I P G + +L +G + ++ A + LE P A
Sbjct: 153 WIGISPSEAFPSGPATSYVAGKDTLLVGEDGQS-------HITTGNMALAILDQLEHPTA 205
Query: 247 SGR 249
Sbjct: 206 IRD 208
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-18
Identities = 50/247 (20%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLE 69
V +TG G + S + +LLL+RG V D + + EHL++ T + ++ +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKV--VGIDNFATGRREHLKDHPNLT----FVEGSIAD 77
Query: 70 EGSFDSAVDGC--DGVFHTASPVIFLSDNPQADIVDPA---VMGTLNVLRSCAKVHSIKR 124
+ + D V HTA+ +P D + +G NV+++ K +++ R
Sbjct: 78 HALVNQLIGDLQPDAVVHTAA----SYKDP-DDWYNDTLTNCVGGSNVVQAAKK-NNVGR 131
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
V + + P + NP Y+++K+ E + + +G
Sbjct: 132 FVYFQTALCYGVKPIQQ-P---VRLDHPRNPANSS-----YAISKSANE----DYLEYSG 178
Query: 185 IDLVAIHPGTVIGP---------FFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVY 235
+D V V+GP FFQ + G + + F + ++D+
Sbjct: 179 LDFVTFRLANVVGPRNVSGPLPIFFQRLSE-GKKCFV----TKARRDFVF----VKDLAR 229
Query: 236 AHIRALE 242
A +RA++
Sbjct: 230 ATVRAVD 236
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 7e-18
Identities = 45/327 (13%), Positives = 90/327 (27%), Gaps = 47/327 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGY-----TVKATVRDPNSPKTEHLRELDGATERLHLF 63
V + G +G + + L ++L V R E ++
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHED--------NPINYV 53
Query: 64 KANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSC-AKVHSI 122
+ ++ + + + V H + + NVL + ++
Sbjct: 54 QCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTE-QENCEANSKMFRNVLDAVIPNCPNL 112
Query: 123 KRVVLTSSI----GAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
K + L + G + D E P L N L + +
Sbjct: 113 KHISLQTGRKHYMGPFESYGKIESHDPPYTEDL---PRLKYMN-----FYYDLEDIMLEE 164
Query: 179 FAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNL-INGDQSFAFPYI----------- 226
K+ G+ PG + G ++N + + I + +
Sbjct: 165 VEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSD 224
Query: 227 FVEIRDVVYAHIRALEVPKASGRY--LLAGSVAQHSDILKFLREHY------PTLLRSGK 278
+ + HI A P A + G V + K L E + K
Sbjct: 225 CSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLK 284
Query: 279 LEEKYQPTIKVSQERAKSLGINFTPWE 305
L++ + V +E + G+ T +
Sbjct: 285 LQDLMKGKEPVWEEIVRENGLTPTKLK 311
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 62/331 (18%), Positives = 118/331 (35%), Gaps = 58/331 (17%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVK-----ATVRDPNSPKTEHLRELDGATERLH 61
K +TG +GF+ S L++ LL+ V +T N + + L + R
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQW-SRFC 82
Query: 62 LFKANLLEEGSFDSAVDGCDGVFHTASPV-IFLS-DNPQADIVDPAVMGTLNVLRSCAKV 119
+ ++ + + + + G D V H A+ + S +P + G LN+L +
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTN-ATNITGFLNILHAAKN- 140
Query: 120 HSIKRVVL--TSSI-GAMLLNETPMTPDVVIDETWFSNPV-LCKENKEWYSLAKTLAEEA 175
++ +SS G P + E NP+ Y++ K + E
Sbjct: 141 AQVQSFTYAASSSTYGD--------HPALPKVEENIGNPLSP-------YAVTKYVNEIY 185
Query: 176 AWKFAKENGIDLVAIHPGTVIGP-------FFQPILNFGAEVILN----LINGD--QSFA 222
A +A+ G + + V G + I + +L INGD S
Sbjct: 186 AQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKW-TAAMLKGDDVYINGDGETSRD 244
Query: 223 FPYIFVEIRDVVYAHIRAL-EVPKASGRYLLAGSVAQHS--DILKFLREHYPTLLRSGKL 279
F Y I +V+ +I + A + + ++ ++ + + KL
Sbjct: 245 FCY----IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKL 300
Query: 280 EEKYQPT----IKVSQ---ERAKSLGINFTP 303
KY+ ++ SQ +A L + + P
Sbjct: 301 SIKYREFRSGDVRHSQADVTKAIDL-LKYRP 330
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 9e-17
Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 49/242 (20%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
M+ + +K + V GA+G + L+++ G+ V+A V E L+ + T
Sbjct: 1 MAQQ--KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVT---- 54
Query: 62 LFKANLL-EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
LF+ LL D+ +G F N + D +G ++ + +
Sbjct: 55 LFQGPLLNNVPLMDTLFEGAHLAFI----------NTTSQAGDEIAIGK-DLADAAKRAG 103
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
+I+ + +S PD + W + P K E
Sbjct: 104 TIQHYIYSS------------MPDHSLYGPWPAVP---------MWAPKFTVENY----V 138
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRA 240
++ G+ ++ G + + + + D +F + F D+ + A
Sbjct: 139 RQLGLPSTFVYA----GIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDP--DIPLPWLDA 192
Query: 241 LE 242
Sbjct: 193 EH 194
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 9e-17
Identities = 50/307 (16%), Positives = 98/307 (31%), Gaps = 54/307 (17%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATER 59
M + + GA G + + L + L + G D T+ +
Sbjct: 1 MN------PKILIIGACGQIGTELTQKLRKLYGTENVIAS-DIRKLNTDVV-------NS 46
Query: 60 LHLFKANLLEEGSFDSAVD--GCDGVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSC 116
N L+ + V+ ++ A+ NP D + +VL +
Sbjct: 47 GPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAW-DLNMNSLFHVL-NL 104
Query: 117 AKVHSIKRVVLTSSIGAMLLNE-TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEA 175
AK IK++ SSI TP I P Y ++K E
Sbjct: 105 AKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIM-----EPS------TVYGISKQAGERW 153
Query: 176 AWKFAKENGIDLVAIHPGTVIGPFFQP-------ILNFGAEVILN---LINGDQSFAFPY 225
+ G+D+ +I +I P ++ + I + P
Sbjct: 154 CEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPM 213
Query: 226 IFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHS----DILKFLREHYPTLLRSGKLEE 281
++++ D + A I ++ P + + ++A S +I +++H P +
Sbjct: 214 MYMD--DAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIP------EFTI 265
Query: 282 KYQPTIK 288
Y+P +
Sbjct: 266 TYEPDFR 272
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-16
Identities = 53/298 (17%), Positives = 98/298 (32%), Gaps = 62/298 (20%)
Query: 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLF 63
G + K V + G +GF+ L K +L+ D + + L + ER+H F
Sbjct: 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWE-VFGMDMQTDRLGDLVKH----ERMHFF 74
Query: 64 KANL-LEEGSFDSAVDGCDGVFHTASP--VIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
+ ++ + + + V CD + + P + + L ++RS K
Sbjct: 75 EGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQP-LRVFELDFEANLPIVRSAVKYG 133
Query: 121 SIKRVVLTSS---IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW---------YSLA 168
K +V S+ G M D D + Y+ +
Sbjct: 134 --KHLVFPSTSEVYG--------MCADEQFDPD--------ASALTYGPINKPRWIYACS 175
Query: 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE---VILNLIN--------- 216
K L + W + E G++ P IGP I V+ +
Sbjct: 176 KQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENIS 234
Query: 217 ----GDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASGRYLLAGSVAQHSDILKFLRE 268
G Q AF Y + D + A ++ +E A+G+ G+ + + + +
Sbjct: 235 LVDGGSQKRAFTY----VDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANK 288
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 9e-16
Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 39/188 (20%)
Query: 11 VCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
V + GA G +A ++ L + R P + + + ++L
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQP-----AKIHKPYPT--NSQIIMGDVLN 78
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
+ A+ G D V+ + + + +V+ + K +KR++
Sbjct: 79 HAALKQAMQGQDIVYANLTG-------------EDLDIQANSVIAA-MKACDVKRLIFVL 124
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
S+G DE A +A + +G++
Sbjct: 125 SLGIY-------------DEVPGKFVEWNNAVIGEPLKPFRRAADA----IEASGLEYTI 167
Query: 190 IHPGTVIG 197
+ P +
Sbjct: 168 LRPAWLTD 175
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-15
Identities = 58/281 (20%), Positives = 95/281 (33%), Gaps = 47/281 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANL-L 68
V + G +GF+ + L + LL+ Y V D S H + ++ +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEV--YGLDIGSDAISRFLN----HPHFHFVEGDISI 56
Query: 69 EEGSFDSAVDGCDGVFHTASP--VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ V CD V + I + NP + + L ++R C K KR++
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRIIRYCVKYR--KRII 113
Query: 127 L--TSSI-GAMLLNETPMTPDVVIDETWFSNPVLCKENKEW-YSLAKTLAEEAAWKFAKE 182
TS + G M D DE + V W YS++K L + W + ++
Sbjct: 114 FPSTSEVYG--------MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 165
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAE---VILNLI-------------NGDQSFAFPYI 226
G+ P +GP + I LI G Q F
Sbjct: 166 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD- 224
Query: 227 FVEIRDVVYAHIRALEVP--KASGRYLLAGSVAQHSDILKF 265
IRD + A R +E + G + G+ + I +
Sbjct: 225 ---IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEEL 262
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-15
Identities = 40/275 (14%), Positives = 94/275 (34%), Gaps = 52/275 (18%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATER 59
M+ +K+V V G +G + + LL+ G + V+ R+P + LR GA
Sbjct: 2 MVD----KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQ-GAE-- 54
Query: 60 LHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + + ++ + A++G F +++ ++ + V + A+
Sbjct: 55 --VVQGDQDDQVIMELALNGAYATF-------IVTNYWESCSQEQEVKQGKLLADL-ARR 104
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
+ VV + + + + + K EE +
Sbjct: 105 LGLHYVVYSGLENI---------------KKLTAGRLAA-----AHFDGKGEVEE----Y 140
Query: 180 AKENGIDLVAIHPGT----VIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVY 235
++ G+ + ++ ++ F G +L+L GD + + D+
Sbjct: 141 FRDIGVPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLSLPTGDVPMD----GMSVSDLGP 196
Query: 236 AHIRALEVP-KASGR-YLLAGSVAQHSDILKFLRE 268
+ L++P K G+ L+ + L +
Sbjct: 197 VVLSLLKMPEKYVGQNIGLSTCRHTAEEYAALLTK 231
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 60/341 (17%), Positives = 109/341 (31%), Gaps = 56/341 (16%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
E +++ VTG +GF+ S +VK L +G T V D N L ++ K +
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVD-NLKDGTKFVNLVDLNIADYMDKED 102
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA----VMGTLNVLRSCAKVHSI 122
L + + +FH + S + D + +L C + I
Sbjct: 103 FLIQIMAGEEFGDVEAIFHEGA----CSSTTEWD-GKYMMDNNYQYSKELLHYCLE-REI 156
Query: 123 KRVVLTSS--IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
+ +S+ G I+ + P N + +K L +E +
Sbjct: 157 PFLYASSAATYG--------GRTSDFIESREYEKP----LNV--FGYSKFLFDEYVRQIL 202
Query: 181 KENGIDLVAI-----------HPGT---VIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226
E +V H G+ V + N + L G ++F ++
Sbjct: 203 PEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGES---PKLFEGSENFKRDFV 259
Query: 227 FVEIRDVVYAHIRALEVPKASGRYLLAGSVAQ-HSDILKFLREHYPTLL-----RSGKLE 280
+V DV ++ LE SG + L A+ + ++ KL+
Sbjct: 260 YVG--DVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLK 316
Query: 281 EKYQPTIKVSQERAKSLG--INFTPWEVGVRGCIESLMEKG 319
+YQ + ++ G F GV + L
Sbjct: 317 GRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA 357
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 5e-15
Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 35/220 (15%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATV------RDPNSPKTEHLREL------ 53
E + V +TGA+GF+ +LV LL+R V + + L +
Sbjct: 71 PELRTVLLTGATGFLGRYLVLELLRRL-DVDGRLICLVRAESDEDAR-RRLEKTFDSGDP 128
Query: 54 -------DGATERLHLFKANL------LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQAD 100
+ A +RL + + L++ + + D + +A+ V P +
Sbjct: 129 ELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA---FPYHE 185
Query: 101 IVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGA-MLLNETPMTPDVVIDETWFSNPVLCK 159
+ P V GT ++R +K S+ + + T D I + V
Sbjct: 186 LFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGG 244
Query: 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIH-PGTVIGP 198
Y +K E + + VA+ G ++
Sbjct: 245 WAGG-YGTSKWAGEVLLREANDLCALP-VAVFRCGMILAD 282
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 8e-15
Identities = 60/337 (17%), Positives = 107/337 (31%), Gaps = 56/337 (16%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S +VK L +G T V D N L ++ K + L +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGIT-DILVVD-NLKDGTKFVNLVDLNIADYMDKEDFLIQ 59
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPA----VMGTLNVLRSCAKVHSIKRVV 126
+ +FH + S + D + +L C + I +
Sbjct: 60 IMAGEEFGDVEAIFHEGA----CSSTTEWD-GKYMMDNNYQYSKELLHYCLE-REIPFLY 113
Query: 127 LTSS--IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
+S+ G I+ + P+ N Y +K L +E + E
Sbjct: 114 ASSAATYG--------GRTSDFIESREYEKPL----NV--YGYSKFLFDEYVRQILPEAN 159
Query: 185 IDLVAI-----------HPGT---VIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230
+V H G+ V + N + L G ++F +++V
Sbjct: 160 SQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGES---PKLFEGSENFKRDFVYVG- 215
Query: 231 RDVVYAHIRALEVPKASGRYLLAGSVAQ-HSDILKFLREHYPTLL-----RSGKLEEKYQ 284
DV ++ LE SG + L A+ + ++ KL+ +YQ
Sbjct: 216 -DVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQ 273
Query: 285 PTIKVSQERAKSLG--INFTPWEVGVRGCIESLMEKG 319
+ ++ G F GV + L
Sbjct: 274 AFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA 310
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 2e-14
Identities = 44/250 (17%), Positives = 75/250 (30%), Gaps = 79/250 (31%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GFV L L H+ E+ +E
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTD--------------HHIFEVH-----------RQTKE 37
Query: 71 GSFDSAVDGCDGVFHTA------SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
+SA+ D + H A F N V +VL +
Sbjct: 38 EELESALLKADFIVHLAGVNRPEHDKEFSLGN---------VSYLDHVLDILTRNTKKPA 88
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
++L+SSI A T P Y +K E+ ++A+E G
Sbjct: 89 ILLSSSIQA-----TQDNP---------------------YGESKLQGEQLLREYAEEYG 122
Query: 185 IDLVAIHPGTVIGPFFQP-----ILNFGAEVI----LNLINGDQSFAFPYIFVEIRDVVY 235
+ + G + +P I F ++ + + + + Y + D+V
Sbjct: 123 NTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNY----VDDIVA 178
Query: 236 AHIRALEVPK 245
RA+E
Sbjct: 179 EIKRAIEGTP 188
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 5e-14
Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 62/262 (23%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V VTG +GF+ S +V+ LL RG V V D + T + + + F+ +L ++
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEV--AVLDNLA--TGKRENVP---KGVPFFRVDLRDK 55
Query: 71 GSFDSAVDGC--DGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSCAKVHSI 122
+ A V H A+ + + + DP ++G LN+L +C + + +
Sbjct: 56 EGVERAFREFRPTHVSHQAA----QASVKVS-VEDPVLDFEVNLLGGLNLLEACRQ-YGV 109
Query: 123 KRVVLTSSIGAMLLNETPMTPDVV-IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
+++V S+ GA+ P+ +ETW P + Y+ +K E + +
Sbjct: 110 EKLVFASTGGAIYGE----VPEGERAEETWPPRPK----SP--YAASKAAFEHYLSVYGQ 159
Query: 182 ENGIDLVAIHPGTVIGP-------------FFQPILNFGAEVILNLINGDQSFAFP---- 224
G+ V++ G V GP F + +L G V + + P
Sbjct: 160 SYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLK-GLPVT---LYARK---TPGDEG 212
Query: 225 ----YIFVEIRDVVYAHIRALE 242
Y++V DV AH AL
Sbjct: 213 CVRDYVYVG--DVAEAHALALF 232
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 6e-14
Identities = 42/317 (13%), Positives = 85/317 (26%), Gaps = 57/317 (17%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ + G G + L + L +G+ V R + A++
Sbjct: 6 ILIAGC-GDLGLELARRLTAQGHEVTGLRRSA-----------QPMPAGVQTLIADVTRP 53
Query: 71 GSFDSAVDG-CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
+ S V + + + + S+ V G N L + + ++ V S
Sbjct: 54 DTLASIVHLRPEILVYCVAA----SEYSDEHYRLSYVEGLRNTLSA-LEGAPLQHVFFVS 108
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE-EAAWKFAKENGIDLV 188
S G + +DE K + E EA
Sbjct: 109 STGVY-----GQEVEEWLDEDTPPIAK--------DFSGKRMLEAEALLA-----AYSST 150
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP---K 245
+ + GP ++ A+ + I + D ++
Sbjct: 151 ILRFSGIYGPGRLRMIRQ-AQTPEQWPARNAWTNR--IHRD--DGAAFIAYLIQQRSHAV 205
Query: 246 ASGRYLLA-GSVAQHSDILKFLREHY----PTLLRSGKLEEKYQPTIKVSQERAKSLGIN 300
Y++ D+L++L + P K K+S R + G
Sbjct: 206 PERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGNK-----KLSNARLLASGYQ 260
Query: 301 FT-P-WEVGVRGCIESL 315
P + G + ++
Sbjct: 261 LIYPDYVSGYGALLAAM 277
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 8e-14
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 37/189 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
+ + GA+G +A L LL + R +D ER+ + + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK--TRIPPEIIDH--ERVTVIEGSFQN 63
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
G + AV + VF A S + A IV +I+RV+ S
Sbjct: 64 PGXLEQAVTNAEVVFVGAME----SGSDMASIVK------------ALSRXNIRRVIGVS 107
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
G L E P+ + + + Y + A +E+ ++
Sbjct: 108 MAG--LSGEFPVALEKWTFDNLPIS----------YVQGERQARNV----LRESNLNYTI 151
Query: 190 IHPGTVIGP 198
+ +
Sbjct: 152 LRLTWLYND 160
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-12
Identities = 44/272 (16%), Positives = 71/272 (26%), Gaps = 53/272 (19%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATE 58
M + K V + GASG L+K +L++G V R + + A +
Sbjct: 16 MQN-----KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD-------EEAYK 63
Query: 59 RLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAK 118
++ + + + SA G D F + VD L K
Sbjct: 64 NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVD--RDYVLKSAELA-K 120
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
K L SS GA K + Y K E +
Sbjct: 121 AGGCKHFNLLSSKGA------------------------DKSSNFLYLQVKGEVEAKVEE 156
Query: 179 FAKENGIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQSFAFPYIFVEIRDVVYAH 237
+ PG ++ + + V + VV A
Sbjct: 157 LKFDR---YSVFRPGVLLCDRQESRPGEWLVRKFFGSLPD---SWASGHSVPVVTVVRAM 210
Query: 238 IRALEVPKASGRYLLAGSVAQHSDILKFLREH 269
+ + P+ LL I + H
Sbjct: 211 LNNVVRPRDKQMELLEN-----KAIHDLGKAH 237
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 6e-12
Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 63/292 (21%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVK-----ATVRDPNSPKTEHLRELDGATERLHLFKANL 67
V G G+ L ++ Y V + E L + +R+ +KA
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 75
Query: 68 LEEGSFDSAVDGCD-----GVFHTASP--VIFLSDNPQAD--IVDPA---------VMGT 109
+ D CD F + P V+ + A ++D + V+GT
Sbjct: 76 GKSIEL-YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGT 134
Query: 110 LNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE------ 163
LNVL + + +V ++G TP++ I+E + + + +
Sbjct: 135 LNVLFAIKEFGEECHLVKLGTMGEYG------TPNIDIEEGYITITHNGRTDTLPYPKQA 188
Query: 164 --WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221
+Y L+K K GI ++ G V G E + N ++ D F
Sbjct: 189 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEM--HEELRNRLDYDAVF 246
Query: 222 AF---PYI--------------------FVEIRDVVYAHIRALEVPKASGRY 250
+ +++IRD V A+ P +G +
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEF 298
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 50/255 (19%), Positives = 99/255 (38%), Gaps = 51/255 (20%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPN--SPKTEHLRELDGATERLHLFKANLL 68
+ +TG +G + S L++ L +G+ + V D N + K E L + G + + + ++
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEI--LVID-NFATGKREVLPPVAGLS----VIEGSVT 75
Query: 69 EEGSFDSAVDGC--DGVFHTA-------SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ G + A D V H+A + N V G++NV ++ +K
Sbjct: 76 DAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATN---------VQGSINVAKAASK- 125
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
+KR++ + A+ P I + P Y ++KT E F
Sbjct: 126 AGVKRLLNFQT--ALCYGRPATVP---IPIDSPTAPF----TS--YGISKTAGE----AF 170
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFG--AEVILNLINGDQSFAFPYI--FVEIRDVVY 235
+ + +V++ V GP I G L G + F + F+++ D +
Sbjct: 171 LMMSDVPVVSLRLANVTGP-RLAI---GPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLA 226
Query: 236 AHIRALEVPKASGRY 250
+L+ + +G +
Sbjct: 227 IADLSLQEGRPTGVF 241
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 7e-12
Identities = 51/295 (17%), Positives = 101/295 (34%), Gaps = 62/295 (21%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKA-----TVRDPNSPKTEHLRELDGATERLHLFKA 65
+ + GA+G V L + L++ G T+ D P+ G + + A
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP-----AGFSGAVDARAA 71
Query: 66 NLLEEGSFDSAVD-GCDGVFHTASPVIFLSDNPQADIVDPA------VMGTLNVLRSC-- 116
+L G + V+ D +FH A+ +S +A +D + GT + +
Sbjct: 72 DLSAPGEAEKLVEARPDVIFHLAA---IVS--GEA-ELDFDKGYRINLDGTRYLFDAIRI 125
Query: 117 --AKVHSIKRVVLTSSI---GAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTL 171
K RVV TSSI GA I + + + P+ Y K +
Sbjct: 126 ANGKDGYKPRVVFTSSIAVFGA--------PLPYPIPDEFHTTPLTS------YGTQKAI 171
Query: 172 AEEAAWKFAKENGIDLVAIHPGTVIGPFFQP-------ILNFGAEVILN---LINGDQSF 221
E +++ D + I T+ +P N E ++ ++ +S
Sbjct: 172 CELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESI 231
Query: 222 AFPYIFVE--IRDVVYAHIRALEVPKASGRYLLAG---SVAQHSDILKFLREHYP 271
+ + +++ + +E + G +V + ++ LR+
Sbjct: 232 RHWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGE---QIEALRKVAG 283
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-11
Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 53/278 (19%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
M G + + + G +G++ + +VK L+ G+ R PNS KT L E +
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF--QSLGAI 61
Query: 62 LFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
+ K L E + D V + P ++ +L + +
Sbjct: 62 IVKGELDEHEKLVELMKKVDVVISALAF--------------PQILDQFKILEAIKVAGN 107
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
IKR + S G + P + E + +
Sbjct: 108 IKRFLP-SDFGVEEDRINALPPFEALIERK----------------------RMIRRAIE 144
Query: 182 ENGIDLVAIHPG----TVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAH 237
E I + I +P + G+ FA Y +D+
Sbjct: 145 EANIPYTYVSANCFASYFINYLLRPYDPKDEITVYG--TGEAKFAMNY----EQDIGLYT 198
Query: 238 IRALEVPKASGR---YLLAGSVAQHSDILKFLREHYPT 272
I+ P+A R Y + ++ +++ +
Sbjct: 199 IKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK 236
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 6e-11
Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 44/256 (17%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKA-----TVRDPNSPKTEHLRELDGATER 59
E + K + +TG +GFV S L L+ G+ V T R N EH E
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN---VEHWI----GHEN 76
Query: 60 LHLFKANLLEEGSFDSAVDGCDGVFHTASP--VIFLSDNPQADIVDPAVMGTLNVLRSCA 117
L +++E + D ++H ASP NP + +GTLN+L
Sbjct: 77 FELINHDVVEPLYIE-----VDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAK 130
Query: 118 KVHSIKRVVLTSSIGAMLLNETPMTPDVVI-DETWFSNPVLCKENKEWYSLAKTLAEEAA 176
+V R++L S+ +E P+V E ++ + V + Y K +AE
Sbjct: 131 RVG--ARLLLAST------SEVYGDPEVHPQSEDYWGH-VNPIGPRACYDEGKRVAETMC 181
Query: 177 WKFAKENGIDLVAIHPGTVIGPFFQP-----ILNFGAEVILNL---INGD--QSFAFPYI 226
+ + K+ G+++ GP + NF + + + G Q+ AF Y
Sbjct: 182 YAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQY- 240
Query: 227 FVEIRDVVYAHIRALE 242
+ D+V + +
Sbjct: 241 ---VSDLVNGLVALMN 253
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 60/273 (21%), Positives = 98/273 (35%), Gaps = 47/273 (17%)
Query: 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLH 61
V + G +GF+ + L + LL+ Y V D S H
Sbjct: 310 CTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGL--DIGSDAISRFLN----HPHFH 363
Query: 62 LFKANLLEEGS-FDSAVDGCDGVFH---TASPVIFLSDNPQADIVDPAVMGTLNVLRSCA 117
+ ++ + V CD V A+P+ + NP + + L ++R C
Sbjct: 364 FVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTR-NP-LRVFELDFEENLRIIRYCV 421
Query: 118 KVHSIKRVVLTSSIGAMLLNET-PMTPDVVIDETWFSNPVLCKENKE-W-YSLAKTLAEE 174
K KR++ S+ +E M D DE SN ++ NK W YS++K L +
Sbjct: 422 KYR--KRIIFPST------SEVYGMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDR 472
Query: 175 AAWKFAKENGIDLVAIHPGTVIGP----FFQPILNFG---AEVILNLIN---------GD 218
W + ++ G+ P +GP + ++ILNL+ G
Sbjct: 473 VIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGK 532
Query: 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGR 249
Q F IRD + A R +E + G
Sbjct: 533 QKRCFTD----IRDGIEALYRIIENAGNRCDGE 561
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 9e-10
Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 48/254 (18%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
M S + + GA+G++ + K L G+ VR+ + +L + +
Sbjct: 1 MGS----RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKAS 56
Query: 61 --HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAK 118
++ ++ + S AV D V T + + +N++++ +
Sbjct: 57 GANIVHGSIDDHASLVEAVKNVDVVISTVGSL--------------QIESQVNIIKAIKE 102
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
V ++KR S G + N + P + E +
Sbjct: 103 VGTVKR-FFPSEFGNDVDNVHAVEPAKSVFEVK----------------------AKVRR 139
Query: 179 FAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILN---LINGDQSFAFPYIFVEIRDVVY 235
+ GI + G F + + G +I GD + +FV+ D+
Sbjct: 140 AIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARV--VFVKEEDIGT 197
Query: 236 AHIRALEVPKASGR 249
I+A++ P+ +
Sbjct: 198 FTIKAVDDPRTLNK 211
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 18/133 (13%)
Query: 13 VTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEG 71
+TGA+G + + + + VR+ K + R + + +
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVE--KVPDDWR-GKVSVR----QLDYFNQE 57
Query: 72 SFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131
S A G D V F+ + N++ + AK + ++
Sbjct: 58 SMVEAFKGMDTVV-------FIP--SIIHPSFKRIPEVENLVYA-AKQSGVAHIIFIGYY 107
Query: 132 GAMLLNETPMTPD 144
N M+P
Sbjct: 108 ADQHNNPFHMSPY 120
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-09
Identities = 38/253 (15%), Positives = 76/253 (30%), Gaps = 47/253 (18%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
M+G ++ G G+ A L + L +G+ + T R+P+ + E +R
Sbjct: 3 AMTG----TLLSF-GH-GYTARVLSRALAPQGWRIIGTSRNPD--QMEAIRASG-----A 49
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
+ ++DG + + +P + D V A+ + A+
Sbjct: 50 EPLLWPGE-----EPSLDGVTHLLISTAP------DSGGDPVLAAL-----GDQIAARAA 93
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
+ V S+ +DET P + + +
Sbjct: 94 QFRWVGYLSTTAVY-----GDHDGAWVDETTPLTPTAAR--------GRWRVMAEQQ-WQ 139
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRA 240
+ L + GP P G I +I Q F+ + + D+ +
Sbjct: 140 AVPNLPLHVFRLAGIYGPGRGPFSKLGKGGIRRIIKPGQVFS----RIHVEDIAQVLAAS 195
Query: 241 LEVPKASGRYLLA 253
+ P Y +
Sbjct: 196 MARPDPGAVYNVC 208
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 13 VTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+TGA+G + ++++ L++ + A VR+P K + L G T R +A+ +E
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPA--KAQALAA-QGITVR----QADYGDE 56
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
+ SA+ G + + +S + V NV+ + AK +K + TS
Sbjct: 57 AALTSALQGVEKLL-------LIS----SSEVGQRAPQHRNVINA-AKAAGVKFIAYTSL 104
Query: 131 IGA 133
+ A
Sbjct: 105 LHA 107
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V VTG +GF WL L G TVK P L E + + ++
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA--PTVPSLFETARVADGMQSEIGDIR 67
Query: 69 EEGSFDSAVDGC--DGVFHTAS-PVIFLS-DNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
++ ++ + VFH A+ P++ LS P + VMGT+ +L + V +K
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEP-VETYSTNVMGTVYLLEAIRHVGGVKA 126
Query: 125 VVLTSS 130
VV +S
Sbjct: 127 VVNITS 132
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 6e-09
Identities = 50/254 (19%), Positives = 83/254 (32%), Gaps = 63/254 (24%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
+TG+ G V L L G+ V VR P L+ A++ L
Sbjct: 152 ITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLL------------ 199
Query: 73 FDSAVDGCDGVFHTASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
DG D + H A IF +D+ + I + V+ T + A+ ++ S+
Sbjct: 200 -----DGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASA 254
Query: 131 IGAMLLNETPMTPDVVIDETWFSNP------VLCKENKEWYSLAKTLAEEAAWKFAKENG 184
+G + D ++ E S +C ++W E A A + G
Sbjct: 255 VGFYGHDRG----DEILTEE--SESGDDFLAEVC---RDW--------EHATAP-ASDAG 296
Query: 185 IDLVAIHPGTVIG----------PFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVV 234
+ I G + F G +G F +I I D+
Sbjct: 297 KRVAFIRTGVALSGRGGMLPLLKTLFS--TGLGG----KFGDGTS--WFSWI--AIDDLT 346
Query: 235 YAHIRALEVPKASG 248
+ RA+ + SG
Sbjct: 347 DIYYRAIVDAQISG 360
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 7e-09
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 13 VTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
VTGA+G + +++ LL++ + A VR+ K L + G R + +
Sbjct: 5 VTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE--KASTLAD-QGVEVR----HGDYNQP 57
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
S A G + F+S + ++ NV+++ A+ +K + T
Sbjct: 58 ESLQKAFAGVSKLL-------FISGPHYDN--TLLIVQHANVVKA-ARDAGVKHIAYTGY 107
Query: 131 IGA 133
A
Sbjct: 108 AFA 110
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-08
Identities = 34/324 (10%), Positives = 100/324 (30%), Gaps = 58/324 (17%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATER-L 60
M ++ V + G +G++ +V + G+ R + ++ L +
Sbjct: 1 MD---KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGA 57
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
L +A+L + A+ D V + ++ ++ L ++ + +
Sbjct: 58 KLIEASLDDHQRLVDALKQVDVVISALA----------GGVLSHHILEQLKLVEAIKEAG 107
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
+IKR + + F E+ + + +
Sbjct: 108 NIKRFLPSE----------------------FGMDPDIMEHALQPGSITFIDKRKVRRAI 145
Query: 181 KENGIDLVAIHPGTVIGPFFQPILNFGAEVILNL------INGDQSFAFPYIFVEIRDVV 234
+ I + G F + ++ +G+ +V+ DV
Sbjct: 146 EAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGI----WVDEDDVG 201
Query: 235 YAHIRALEVPKASGRYL---LAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPT---IK 288
I++++ P+ + + ++ ++++ L++ Y + +
Sbjct: 202 TYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ-----NLDKIYISSQDFLA 256
Query: 289 VSQERAKSLGI-NFTPWEVGVRGC 311
++++ I +++ RG
Sbjct: 257 DMKDKSYEEKIVRCHLYQIFFRGD 280
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 9e-08
Identities = 49/276 (17%), Positives = 93/276 (33%), Gaps = 65/276 (23%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD--PNSPKTEHLRELDGATERLHLFK 64
E + + +TG +GFV S L + K V D ++ + R + +
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 65 ANLLEEGSFDSAVD-------GCDGVFHTASPVIFLSD----NPQADIVDPAVMGTLNVL 113
+ ++ +D D +FH A+ +SD N + + LN+L
Sbjct: 69 KGEVIAADINNPLDLRRLEKLHFDYLFHQAA----VSDTTMLNQELVM-KTNYQAFLNLL 123
Query: 114 RSCAKVHSIKRVVLTSS---IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKT 170
+V+ SS G + P +P N Y +K
Sbjct: 124 EIARSKK--AKVIYASSAGVYGN---TKAP------NVVGKNESPE----NV--YGFSKL 166
Query: 171 LAEEAAWKFAKENGIDLVAI-----------HPGT---VIGPFFQPILNFGAEVILNLIN 216
+E + + N V + + ++ + EV L
Sbjct: 167 CMDE--FVLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMA-FKEVKLF-EF 222
Query: 217 GDQS--FAFPYIFVEIRDVVYAHIRALEVPKASGRY 250
G+Q F +++E DV+ A+++A++ + SG Y
Sbjct: 223 GEQLRDF----VYIE--DVIQANVKAMK-AQKSGVY 251
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-07
Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 52/269 (19%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS---PKTEHLRELDGATERLHLFKANL 67
+ + G +G + +V ++ G A VR + P+T+ + + + L + ++
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ + A+ D V A ++ Q I+ K +
Sbjct: 65 NDHETLVKAIKQVDIVICAAGRLLIED---QVKIIK------------AIKEAGNVKKFF 109
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
S G + + P + E + + + G+
Sbjct: 110 PSEFGLDVDRHDAVEPVRQVFEEK----------------------ASIRRVIEAEGVPY 147
Query: 188 VAIHPGTVIGPFFQPILNFGAEVILN---LI--NGDQSFAFPYIFVEIRDVVYAHIRALE 242
+ G F + + A +I +G+ A +V DV IRA
Sbjct: 148 TYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGA----YVTEADVGTFTIRAAN 203
Query: 243 VPKASGRYL---LAGSVAQHSDILKFLRE 268
P + + L + ++++ +
Sbjct: 204 DPNTLNKAVHIRLPKNYLTQNEVIALWEK 232
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 24/113 (21%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+TG +GFV +L L ++ V T R N K + + + +++
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEVFGTSR-NNEAKLPN----------VEMISLDIM 61
Query: 69 EEGSFDSAVDGC--DGVFHTAS----PVIFLSDNPQ--ADIVDPAVMGTLNVL 113
+ + D +FH A+ + N + V GTL+VL
Sbjct: 62 DSQRVKKVISDIKPDYIFHLAAKSSVKDSW--LNKKGTFSTN---VFGTLHVL 109
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 1 MMSGEGEEKVVCVTGAS-GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-- 57
M+ +K++ +TGAS GF + L G+ V A++RD ++ + G
Sbjct: 1 MVM---SKKIILITGASSGFGRLT-AEALAGAGHRVYASMRDIVGRNASNVEAIAGFARD 56
Query: 58 --ERLHLFKANLLEEGSFDSAVD 78
L + ++ + S D A+D
Sbjct: 57 NDVDLRTLELDVQSQVSVDRAID 79
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 19/128 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
K V + GA+G L+ +L V A R EH R LD L
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR---KALAEHPR-LDNPVGPLAELLPQ 61
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQA-DIVDPAVMGTLNVLRSCAKVHSIKRV 125
L D F I + + +A VD L V + + +
Sbjct: 62 LD---------GSIDTAFCCLGTTIKEAGSEEAFRAVD--FDLPLAVGKRALE-MGARHY 109
Query: 126 VLTSSIGA 133
++ S++GA
Sbjct: 110 LVVSALGA 117
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 3e-06
Identities = 28/254 (11%), Positives = 69/254 (27%), Gaps = 56/254 (22%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRD--PNSPKTEHLRELDGATERLHLFKAN 66
+ + + G +G++ ++V+ L + R P+S + + + + + +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ E S + D V P + ++++ + +IKR +
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPF--------------PMISSQIHIINAIKAAGNIKRFL 110
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
S G P+ P + E + + +
Sbjct: 111 -PSDFGCEEDRIKPLPPFESVLEKK----------------------RIIRRAIEAAALP 147
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLI---------NGDQSFAFPYIFVEIRDVVYAH 237
+ F +N+ + G+ F D+
Sbjct: 148 YTYVSA----NCFGAYFVNYLLHPSPHPNRNDDIVIYGTGETKFV----LNYEEDIAKYT 199
Query: 238 IRALEVPKASGRYL 251
I+ P+ R +
Sbjct: 200 IKVACDPRCCNRIV 213
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHL---- 62
E+ V VTGA+G V V +L +RGY V A+ + ++L++L GA+E +
Sbjct: 150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE--AADYLKQL-GASEVISREDVY 206
Query: 63 -FKANLLEEGSFDSAVD 78
L + + AVD
Sbjct: 207 DGTLKALSKQQWQGAVD 223
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 78/241 (32%)
Query: 1 MMSGEGEEKVVCVTGAS---GFVASWLVKLLLQ---RGYTVKATVRDPNSPKTEHLRELD 54
++ + +TG + G LVK LL + T R+ K L +L
Sbjct: 14 LVPRGSHMNSILITGCNRGLGLG---LVKALLNLPQPPQHLFTTCRNREQAKE--LEDLA 68
Query: 55 GATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS-PVIF-----LSDNPQADIVDPAVM- 107
+H+ + +L ++D V +GV V+F + + V +
Sbjct: 69 KNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELL 128
Query: 108 --------GTLNV-------LRSCAKVHSIKR--------VVLTSSIGAMLLNETPMTPD 144
+ + L+ AK + + + ++S +G++ N
Sbjct: 129 DTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDG---- 184
Query: 145 VVIDETWFSNPVLCKENKEWYS----------LAKTLAEEAAWKFAKENGIDLVAIHPGT 194
Y+ K+L+ + I V++HPG
Sbjct: 185 ------------------GMYAYRTSKSALNAATKSLSVD-----LYPQRIMCVSLHPGW 221
Query: 195 V 195
V
Sbjct: 222 V 222
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 8 EKVVCVTGAS-GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKA 65
KV VTGAS GF + + + + G TV T R E L +L A +R
Sbjct: 5 AKVWLVTGASSGFGRA-IAEAAVAAGDTVIGTARRT-----EALDDLVAAYPDRAEAISL 58
Query: 66 NLLEEGSFDSAVD 78
++ + D
Sbjct: 59 DVTDGERIDVVAA 71
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 27/246 (10%), Positives = 67/246 (27%), Gaps = 44/246 (17%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V + GA+GF+ ++ L R ++ + + + E+
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130
+ + + + S V S Q +V K + L S
Sbjct: 73 EAMEKILKEHEIDI-VVSTVGGESILDQIALVK------------AMKAVGTIKRFLPSE 119
Query: 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAI 190
G + P+ P + + + +E+GI I
Sbjct: 120 FGHDVNRADPVEPGLNMYREK----------------------RRVRQLVEESGIPFTYI 157
Query: 191 HPGTVIGPFFQPILNFGAEVILN-----LINGDQSFAFPYIFVEIRDVVYAHIRALEVPK 245
++ + ++ + +G+ FV D+ ++ ++ +
Sbjct: 158 CCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAY----FVAGTDIGKFTMKTVDDVR 213
Query: 246 ASGRYL 251
+ +
Sbjct: 214 TLNKSV 219
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHL---- 62
E V VTGA+G V S V +L +RGYTV+A+ + ++LR L GA E L
Sbjct: 149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA--EHDYLRVL-GAKEVLAREDVM 205
Query: 63 -FKANLLEEGSFDSAVD 78
+ L++ + +AVD
Sbjct: 206 AERIRPLDKQRWAAAVD 222
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 9 KVVCVTGAS-GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL------DGATERLH 61
K V +TGA G + + +++ LLQ G V T + T++ + + G+ L
Sbjct: 477 KYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGS--TLI 534
Query: 62 LFKANLLEEGSF---DSAVD 78
+ N GS ++ ++
Sbjct: 535 VVPFNQ---GSKQDVEALIE 551
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE---RLHLF 63
++ V VTGASG V S V LL + GY V A + +L+ L GA R
Sbjct: 146 QDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRES--THGYLKSL-GANRILSRDEFA 202
Query: 64 KANLLEEGSFDSAVD 78
++ LE+ + A+D
Sbjct: 203 ESRPLEKQLWAGAID 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 59/225 (26%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKA---------TVRDPNSPKT--EHLRELDGA 56
K V + G G +W+ + Y V+ +++ NSP+T E L++L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--- 205
Query: 57 TERLHLFKANLLEEGSFDSAV-DGCDGVFHTASPVIFLSDNPQA-----DIVDPAVMGTL 110
L+ N S + + ++ ++ +
Sbjct: 206 ---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 111 NVLRSCAKVHSIKRVVLTS---SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE---- 163
N+ SC +++LT+ + L T T + +D S + E K
Sbjct: 263 NL--SC-------KILLTTRFKQVTDFLSAAT--TTHISLDH--HSMTLTPDEVKSLLLK 309
Query: 164 WYSL-AKTLAEEAAWKFAKENGIDLVAIHPGTV--IGPFFQPILN 205
+ + L E + +P + I + L
Sbjct: 310 YLDCRPQDLPREV------------LTTNPRRLSIIAESIRDGLA 342
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 51/349 (14%), Positives = 96/349 (27%), Gaps = 108/349 (30%)
Query: 20 VASWLVKLLLQRGY--------------TVKA---------TVRDPN------SPKTEHL 50
+ + L +LL + Y A T R + T H+
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 51 R---ELDGATER--LHLFKANLLEEGSFDSAVDGCDGVFHTASP----VI--FLSDNP-- 97
T L L+ D + +P +I + D
Sbjct: 290 SLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTT-----NPRRLSIIAESIRDGLAT 343
Query: 98 -------QADIVDPAVMGTLNVL-----RSCAKVHSI--KRVVLTSSIGAML-LNETPMT 142
D + + +LNVL R S+ + + + +++ +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 143 PDVVIDETWFSNPVLC-KENKEW-YSL-------AKTLAEEAAW------KFAKENGIDL 187
VV+++ L K+ KE S+ L E A + D
Sbjct: 404 VMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 188 VAIHPGTVIGPFFQPI---LNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244
+ P + F+ I L E + ++ F +F++ R + IR
Sbjct: 462 DDLIPPYLDQYFYSHIGHHL-KNIE------HPERMTLFRMVFLDFR-FLEQKIRHDSTA 513
Query: 245 KASGRYLLA---------GSVAQH--------SDILKFLREHYPTLLRS 276
+ +L + + + IL FL + L+ S
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 42/233 (18%), Positives = 78/233 (33%), Gaps = 77/233 (33%)
Query: 9 KVVCVTGAS---GFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLF 63
V VTGA+ G LV+ L++ + AT RD K L+ + + R+H+
Sbjct: 4 GSVVVTGANRGIGLG---LVQQLVKDKNIRHIIATARDVE--KATELKSIKDS--RVHVL 56
Query: 64 KANLLEEGSFDSAV---------DGCDGVFHTASPVIFLSDNPQADIVDPAVM------- 107
+ + S D+ V DG + + A + LS + + AV+
Sbjct: 57 PLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAG--VLLSYGTNTE-PNRAVIAEQLDVN 113
Query: 108 --GTLNVLRSC--------------AKVHSIKRVV-LTSSIGAMLLNETPMTPDVVIDET 150
+ + + S V+ ++S +G++ N + V+
Sbjct: 114 TTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLA-- 171
Query: 151 WFSNPVLCKENKEWYS--------LAKTLAEEAAWKFAKENGIDLVAIHPGTV 195
Y +TLA + K++ + +V PG V
Sbjct: 172 --------------YRMSKAAINMFGRTLAVD-----LKDDNVLVVNFCPGWV 205
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 40/255 (15%), Positives = 76/255 (29%), Gaps = 71/255 (27%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
M+ GE + V V G G + S V+ R + V + N E A+ +
Sbjct: 1 MAASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN--------EEASASVIVK 52
Query: 62 LFKANLLEEGSFDSAVD------GCDGVFHTASPVIFLSDNPQADIVDPA--------VM 107
+ + + + V D + A + N ++ + +
Sbjct: 53 MTDSFTEQADQVTAEVGKLLGDQKVDAILCVAG--GWAGGNAKSKSLFKNCDLMWKQSIW 110
Query: 108 GTLNVLRSCAKVHSIK--RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165
+ K H + + L + A L+ TP Y
Sbjct: 111 TSTISSHLATK-HLKEGGLLTLAGAKAA--LDGTPGMIG--------------------Y 147
Query: 166 SLAK--------TLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ---PILNFG------- 207
+AK +LA + + +G +A+ P T+ P + P +F
Sbjct: 148 GMAKGAVHQLCQSLAGKNSG---MPSGAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEF 204
Query: 208 -AEVILNLINGDQSF 221
E + I G++
Sbjct: 205 LVETFHDWITGNKRP 219
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 33/166 (19%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD--PNSPKT--EHLRELDGAT 57
+ E K+V VTG +G++ S V L++ GY V D NS L L
Sbjct: 5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGYDC--VVADNLSNSTYDSVARLEVLTK-- 60
Query: 58 ERLHLFKANLLEEGSFDSAVD--GCDGVFH----------TASPVIFLSDNPQADIVDPA 105
+ ++ +L + + D V H T P+ + +N
Sbjct: 61 HHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNN--------- 111
Query: 106 VMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVV-IDET 150
++GT+ +L + +++ + V +SS A + + P+++ I E
Sbjct: 112 ILGTVVLLELMQQ-YNVSKFVFSSS--ATVYGDATRFPNMIPIPEE 154
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATV---RDPNSPKTEHLRELDGATERLHLF 63
+ + + +TG +G V+ +L K + RD K + + R+ F
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDEL--KQSEMAM-EFNDPRMRFF 75
Query: 64 KANLLEEGSFDSAVDGCDGVFHTAS--PVIFLSDNP-QADIVDPAVMGTLNVLRSCAKVH 120
++ + + A++G D H A+ V NP + + +MG NV+ +C K +
Sbjct: 76 IGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLEC--IKTNIMGASNVINACLK-N 132
Query: 121 SIKRVVLTSSIGA 133
+I +V+ S+ A
Sbjct: 133 AISQVIALSTDKA 145
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 9e-04
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ VTG +G ++L KLLL++GY V V +S LREL G + ++
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL-GIEGDIQYEDGDMA 73
Query: 69 EEGSFDSAVDGC--DGVFHTAS----PVIFLSDNPQ--ADIVDPAVMGTLNVL 113
+ S AV V++ A+ + + P + +G ++L
Sbjct: 74 DACSVQRAVIKAQPQEVYNLAAQSFVGASW--NQPVTTGVVD---GLGVTHLL 121
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 100.0 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.98 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.97 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.97 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.97 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.97 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.97 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.97 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.97 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.97 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.97 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.96 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.96 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.96 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.96 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.96 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.96 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.96 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.96 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.96 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.96 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.96 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.96 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.96 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.96 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.96 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.96 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.96 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.96 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.96 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.96 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.96 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.96 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.96 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.96 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.96 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.96 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.96 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.96 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.96 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.96 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.96 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.96 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.96 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.96 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.96 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.96 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.96 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.96 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.96 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.96 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.96 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.96 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.95 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.95 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.95 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.95 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.95 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.95 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.95 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.95 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.95 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.95 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.95 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.95 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.95 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.95 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.95 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.95 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.95 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.95 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.95 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.95 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.95 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.95 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.95 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.95 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.95 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.95 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.95 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.95 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.95 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.95 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.95 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.95 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.95 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.95 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.95 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.95 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.95 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.95 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.95 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.95 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.95 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.95 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.95 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.95 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.95 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.95 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.95 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.95 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.95 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.95 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.95 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.95 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.95 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.95 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.95 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.95 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.95 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.95 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.95 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.95 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.95 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.95 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.95 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.95 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.95 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.95 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.95 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.95 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.95 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.95 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.95 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.95 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.95 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.95 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.95 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.94 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.94 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.94 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.94 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.94 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.94 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.94 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.94 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.94 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.94 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.94 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.94 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.94 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.94 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.94 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.94 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.94 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.94 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.94 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.94 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.94 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.94 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.94 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.94 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.94 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.94 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.94 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.94 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.93 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.93 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.93 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.93 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.93 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.93 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.93 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.93 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.93 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.93 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.93 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.93 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.93 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.93 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.93 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.93 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.93 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.92 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.92 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.92 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.92 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.91 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.9 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.9 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.89 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.89 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.89 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.89 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.88 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.87 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.87 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.86 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.85 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.84 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.84 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.8 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.79 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.77 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.77 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.76 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.75 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.74 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.74 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.73 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.58 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.55 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.33 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.28 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 99.24 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 99.1 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.05 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 99.05 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.98 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.86 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.86 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.73 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.7 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.68 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.68 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.65 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.64 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.59 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.58 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.55 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.54 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.51 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.48 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.38 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.19 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.18 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.15 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.15 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.09 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.09 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.03 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.03 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 98.01 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.99 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.98 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.97 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.96 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.92 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.91 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.87 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.86 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.86 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.85 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.83 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.82 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.82 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.81 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.81 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.8 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.79 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.76 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.7 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.69 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.67 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.65 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.64 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.64 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.64 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.63 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.61 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.6 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.57 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.57 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.57 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.57 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.56 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.55 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.53 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.53 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.52 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 97.51 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.5 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.5 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.49 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.49 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.46 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.4 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.4 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.39 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.37 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.35 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.34 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.34 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.34 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.32 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.28 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 97.26 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.26 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.26 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.25 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.25 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.24 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.24 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.24 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.23 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.22 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.22 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.21 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 97.21 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.2 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.17 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.17 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.16 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.14 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.13 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.12 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.11 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.09 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.06 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.04 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.04 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.02 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.01 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.0 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.99 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.98 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.97 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.97 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.97 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.96 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.96 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.96 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.93 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.93 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.91 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.89 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.88 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.84 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.83 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.82 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.8 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.8 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.78 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.73 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.73 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.69 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.64 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 96.63 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.63 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.63 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.63 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 96.63 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.61 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.6 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.6 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.6 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.6 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.59 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.59 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.59 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.59 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.56 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.53 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.53 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.52 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.52 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.51 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.51 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.51 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.5 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.49 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.49 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.49 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.48 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.48 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.48 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.48 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.47 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.47 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.47 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.46 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.44 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.44 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.43 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.43 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.42 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.41 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.41 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.41 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.38 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.38 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 96.37 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.37 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 96.37 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.34 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.34 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.32 |
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=345.32 Aligned_cols=300 Identities=14% Similarity=0.143 Sum_probs=237.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 81 (322)
+++|+|||||||||||++|+++|+++| ++|++++|.........+..+. ...+++++.+|++|++++++++++ +|
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQ-DHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTT-TCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhc-cCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 456899999999999999999999999 7788888765433323333222 135799999999999999999987 99
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
+|||+||.... ....++...+++|+.++.+++++|++. ++++|||+||. ++|+.... ..+++|+++..|.
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~-~vy~~~~~---~~~~~E~~~~~p~---- 171 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTD-EVYGSLGK---TGRFTEETPLAPN---- 171 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEG-GGGCCCCS---SCCBCTTSCCCCC----
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCch-HHhCCCCc---CCCcCCCCCCCCC----
Confidence 99999997644 234566789999999999999999998 89999999999 66665432 6689999988776
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVY 235 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~ 235 (322)
+.|+.+|.++|++++.+++++|++++++||+.+|||...+. .....++..+..+. .+++ +.++|+|++|+|+
T Consensus 172 --~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 248 (346)
T 4egb_A 172 --SPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE-KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCS 248 (346)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc-chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHH
Confidence 77999999999999999998999999999999999987543 34455666777776 2233 7789999999999
Q ss_pred HHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC--CCCC-CccCCCCccccchHHH-HhhCCcc-cchhhhHH
Q 020747 236 AHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL--RSGK-LEEKYQPTIKVSQERA-KSLGINF-TPWEVGVR 309 (322)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~--~~~~-~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~ 309 (322)
+++.+++++..+++|+++ ++.+++.|+++.+.+.+|... +... ........+.+|++|+ +.|||+| ++++++|+
T Consensus 249 a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~ 328 (346)
T 4egb_A 249 AIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQ 328 (346)
T ss_dssp HHHHHHHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred HHHHHHhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHHH
Confidence 999999987755688777 567999999999999987532 1111 1123345677999999 7899999 79999999
Q ss_pred HHHHHHHHc
Q 020747 310 GCIESLMEK 318 (322)
Q Consensus 310 ~~~~~~~~~ 318 (322)
++++|++.+
T Consensus 329 ~~~~~~~~~ 337 (346)
T 4egb_A 329 ETVQWYEKN 337 (346)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999999875
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=336.23 Aligned_cols=286 Identities=15% Similarity=0.169 Sum_probs=234.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|||||||||||++|+++|+++|++|++++|+.... . + .+++++.+|++ ++++.++++++|+|||+|+
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~-~-------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK--A-I-------NDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcc--c-C-------CceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 7999999999999999999999999999999983221 1 1 15789999999 9999999999999999999
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
..... ++...+++|+.++.+++++|++. ++++|||+||. .+|+... ..+++|+++..|. +.|+.+
T Consensus 72 ~~~~~---~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~-~vyg~~~----~~~~~E~~~~~p~------~~Y~~s 136 (311)
T 3m2p_A 72 TRGSQ---GKISEFHDNEILTQNLYDACYEN-NISNIVYASTI-SAYSDET----SLPWNEKELPLPD------LMYGVS 136 (311)
T ss_dssp CCCSS---SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGCCCGG----GCSBCTTSCCCCS------SHHHHH
T ss_pred cCCCC---ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccH-HHhCCCC----CCCCCCCCCCCCC------chhHHH
Confidence 76543 55789999999999999999998 89999999998 6676543 5788999988776 779999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHHhhcC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~~~~~ 243 (322)
|.++|++++.++++++++++++||+.+|||...+. .....++..+..|. .+++ +.++|+|++|+|++++.++++
T Consensus 137 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~ 215 (311)
T 3m2p_A 137 KLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN-YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQ 215 (311)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C-CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC-CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhc
Confidence 99999999999998999999999999999987643 33455666677776 3333 789999999999999999998
Q ss_pred CCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCC--CCC-ccCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 244 PKASGRYLLA-GSVAQHSDILKFLREHYPTLLRS--GKL-EEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 244 ~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~--~~~-~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
+..++.|+++ ++.+|++|+++.+++.+|..... ... .........+|++|+ +.|||+| ++++++|+++++|+++
T Consensus 216 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~ 295 (311)
T 3m2p_A 216 EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRG 295 (311)
T ss_dssp TTCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC
T ss_pred CCCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHh
Confidence 7656688776 68899999999999999753211 111 233456788999999 7799999 7999999999999987
Q ss_pred cCCC
Q 020747 318 KGFL 321 (322)
Q Consensus 318 ~~~~ 321 (322)
.+..
T Consensus 296 ~~~~ 299 (311)
T 3m2p_A 296 LDDV 299 (311)
T ss_dssp ----
T ss_pred cccC
Confidence 6544
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=344.15 Aligned_cols=300 Identities=17% Similarity=0.175 Sum_probs=240.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-----CCcEEEEEccCCCccchHHhhCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-----TERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
+++|+|||||||||||++|+++|+++|++|++++|+...... .+..+... ..+++++.+|++|+++++++++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY-NLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHH-HHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchh-hhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 346899999999999999999999999999999998654322 22211110 056899999999999999999999
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+||.... ....++...+++|+.++.+++++|++. ++++|||+||. ++|+... ..+++|+++..|.
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~-~vyg~~~----~~~~~E~~~~~p~--- 172 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASS-STYGDHP----ALPKVEENIGNPL--- 172 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEG-GGGTTCC----CSSBCTTCCCCCC---
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecH-HhcCCCC----CCCCccCCCCCCC---
Confidence 999999997432 223345678999999999999999998 89999999999 6666554 6789999988776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCCC--CCC---CCCcceeHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGDQ--SFA---FPYIFVEIR 231 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~--~~~---~~~~~i~~~ 231 (322)
+.|+.+|.++|++++.+++++|++++++||+++|||...+.. .....++..+..+.+ +++ +.++|+|++
T Consensus 173 ---~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 249 (351)
T 3ruf_A 173 ---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYID 249 (351)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHH
Confidence 779999999999999999989999999999999999875432 223456666777762 222 788999999
Q ss_pred HHHHHHHHhhcCC--CCCccEEEe-cCCCCHHHHHHHHHHhCCCCCC----CCC---CccCCCCccccchHHH-HhhCCc
Q 020747 232 DVVYAHIRALEVP--KASGRYLLA-GSVAQHSDILKFLREHYPTLLR----SGK---LEEKYQPTIKVSQERA-KSLGIN 300 (322)
Q Consensus 232 D~a~~~~~~~~~~--~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~----~~~---~~~~~~~~~~~~~~k~-~~lg~~ 300 (322)
|+|++++.++.++ ..+++|+++ ++.+|++|+++.+.+.++..+. +.. ..........+|++|+ +.|||+
T Consensus 250 Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 329 (351)
T 3ruf_A 250 NVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYR 329 (351)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCC
Confidence 9999999999872 344588776 6889999999999999865211 110 1123445778999999 779999
Q ss_pred c-cchhhhHHHHHHHHHHc
Q 020747 301 F-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 301 ~-~~~~~~l~~~~~~~~~~ 318 (322)
| ++++++|+++++|++.+
T Consensus 330 p~~~~~~~l~~~~~~~~~~ 348 (351)
T 3ruf_A 330 PNIKIREGLRLSMPWYVRF 348 (351)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9 89999999999999864
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=338.85 Aligned_cols=313 Identities=40% Similarity=0.696 Sum_probs=232.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++|+||||||+||||++|+++|+++|++|++++|+.+.... ..+..+.....+++++.+|++|+++++++++++|+|||
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 83 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH 83 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 45899999999999999999999999999999997653211 11111111113588999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc---cccc
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC---KENK 162 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~---~~~~ 162 (322)
+|+.......++....+++|+.|+.+++++|++...+++|||+||..++++.... ..+++|+.+...... ..+.
T Consensus 84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~---~~~~~E~~~~~~~~~~~~~~~~ 160 (337)
T 2c29_D 84 VATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQ---LPVYDESCWSDMEFCRAKKMTA 160 (337)
T ss_dssp CCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSC---CSEECTTCCCCHHHHHHHCCTT
T ss_pred eccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCC---CcccCcccCCchhhhcccCCcc
Confidence 9997532222333468999999999999999987338999999999667765431 446788765432210 0122
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC--CCCcceeHHHHHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA--FPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~~i~~~D~a~~~~~ 239 (322)
+.|+.||.++|.++..+++++|++++++||++||||................+.|. ..+. ...+|+|++|+|++++.
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~ 240 (337)
T 2c29_D 161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHH
Confidence 56999999999999999877899999999999999986543222111111123343 2222 34559999999999999
Q ss_pred hhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc--cCCCCccccchHHHHhhCCcc-cchhhhHHHHHHHHH
Q 020747 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE--EKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIESLM 316 (322)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~~~ 316 (322)
+++++..+|.|+++++.+|++|+++.+.+.++...+|.... ........+|++|+++|||+| ++++++|+++++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~~~~~~~~ 320 (337)
T 2c29_D 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCR 320 (337)
T ss_dssp HHHCTTCCEEEEECCEEEEHHHHHHHHHHHCTTSCCCSCCTTCCTTCCCCEECCHHHHHHTCCCCCCHHHHHHHHHHHHH
T ss_pred HhcCcccCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCcccCCCccccccHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 99876666788888888999999999999886444443221 223356778999998899999 899999999999999
Q ss_pred HcCCCC
Q 020747 317 EKGFLS 322 (322)
Q Consensus 317 ~~~~~~ 322 (322)
+++.++
T Consensus 321 ~~~~~~ 326 (337)
T 2c29_D 321 AKGLLP 326 (337)
T ss_dssp HTTSSC
T ss_pred HcCCCC
Confidence 887654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=339.28 Aligned_cols=313 Identities=37% Similarity=0.604 Sum_probs=226.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+|+|||||||||||++|+++|+++||+|++++|+.+.... ..+..+. ...+++++.+|++|+++++++++++|+|||+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 5799999999999999999999999999999997654321 1111221 1246889999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc--ccc-ch
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC--KEN-KE 163 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~--~~~-~~ 163 (322)
||.......++..+.+++|+.|+.+++++|++..++++|||+||.+++++.+... ...+++|+++..+.+. ..+ ..
T Consensus 88 A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~-~~~~~~E~~~~~~~~~~~~~~~~~ 166 (338)
T 2rh8_A 88 ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDG-TGLVVDEKNWTDIEFLTSAKPPTW 166 (338)
T ss_dssp SSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTC-SCCCCCTTTTTCC-------CCCC
T ss_pred CCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCC-CCcccChhhccchhhccccCCccc
Confidence 9975332223334589999999999999999873389999999986565432110 0136788764432210 111 12
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---------CCCcceeHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---------FPYIFVEIRDV 233 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---------~~~~~i~~~D~ 233 (322)
.|+.||.++|.++..+++++|++++++||++||||............+.....|. ..++ ..++|+|++|+
T Consensus 167 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dv 246 (338)
T 2rh8_A 167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV 246 (338)
T ss_dssp CCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHHH
Confidence 4999999999999999887899999999999999986543332222222223343 1111 23489999999
Q ss_pred HHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCcc-CCCCccccchHHHHhhCCcc-cchhhhHHHH
Q 020747 234 VYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEE-KYQPTIKVSQERAKSLGINF-TPWEVGVRGC 311 (322)
Q Consensus 234 a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~ 311 (322)
|++++.+++++..+|.|+++++.+|++|+++.+.+..+..++|..... .......+|++|+++|||+| ++++|+|+++
T Consensus 247 a~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~~gl~~~ 326 (338)
T 2rh8_A 247 CRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISSEKLVKEGFSFKYGIEEIYDES 326 (338)
T ss_dssp HHHHHHHHHCTTCCEEEEECSEEECHHHHHHHHHHHCTTSCCCCCCTTSCSSCSCCCCCHHHHHHTCCCSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCcEEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCCCcCcceeechHHHHHhCCCCCCCHHHHHHHH
Confidence 999999998766667898888789999999999998874444432211 11223789999997799999 8999999999
Q ss_pred HHHHHHcCCCC
Q 020747 312 IESLMEKGFLS 322 (322)
Q Consensus 312 ~~~~~~~~~~~ 322 (322)
++|++.+++++
T Consensus 327 ~~~~~~~~~~~ 337 (338)
T 2rh8_A 327 VEYFKAKGLLQ 337 (338)
T ss_dssp HHHHHHTTCC-
T ss_pred HHHHHHcCCCC
Confidence 99999987764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=332.80 Aligned_cols=311 Identities=33% Similarity=0.548 Sum_probs=227.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe-CCCCcC-hhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVR-DPNSPK-TEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+|+|||||||||||++|+++|+++|++|++++| +..... ...+..+.....+++++.+|++|+++++++++++|+|||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 378999999999999999999999999999988 542211 111222111113578899999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc--cccch
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC--KENKE 163 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~--~~~~~ 163 (322)
+|+.......++....+++|+.|+.+++++|++..++++|||+||..++++.... ..+++|+++..+.+. ..+.+
T Consensus 81 ~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 81 TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKD---KDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp CCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSC---CSEECTTCCCCHHHHHHHCCTT
T ss_pred cCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCC---CeecCCccccchhhhcccCccc
Confidence 9986522222333568999999999999999886467899999999666654321 457788765443211 01112
Q ss_pred -hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHh
Q 020747 164 -WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 164 -~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~ 240 (322)
.|+.||.++|.++.++++++|++++++||++||||............+.....|. ..++ ..++|+|++|+|++++.+
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~ 237 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYL 237 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHH
Confidence 5999999999999999888899999999999999986543222111222234454 2233 234899999999999999
Q ss_pred hcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCC--c-cCCCCccccchHHHHhhCCcc-cchhhhHHHHHHHHH
Q 020747 241 LEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL--E-EKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIESLM 316 (322)
Q Consensus 241 ~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~--~-~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~~~ 316 (322)
++++...|.|+++++.+|++|+++.+.+..+..++|... . ........+|++|+++|||+| ++++++|+++++|++
T Consensus 238 ~~~~~~~g~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~l~~~~~~~~ 317 (322)
T 2p4h_X 238 LENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCK 317 (322)
T ss_dssp HHSCCCCEEEECCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCCEECCEECCHHHHHTTCCCCCCHHHHHHHHHHHHH
T ss_pred hhCcCCCCCEEEcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCCCcceecccHHHHHhCCccCCCHHHHHHHHHHHHH
Confidence 987655677887788899999999999988654444321 1 111145778999997799999 799999999999999
Q ss_pred HcCCC
Q 020747 317 EKGFL 321 (322)
Q Consensus 317 ~~~~~ 321 (322)
+++++
T Consensus 318 ~~~~~ 322 (322)
T 2p4h_X 318 EKGYL 322 (322)
T ss_dssp HHTCC
T ss_pred hcCCC
Confidence 87753
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=329.13 Aligned_cols=287 Identities=20% Similarity=0.239 Sum_probs=227.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|||||||||||++|+++|+++| .+++++++..... ..+ ...++++.+|++| +++.++++++|+|||+|+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~-~~~------~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNE-EFV------NEAARLVKADLAA-DDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCG-GGS------CTTEEEECCCTTT-SCCHHHHTTCSEEEECCC
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCCh-hhc------CCCcEEEECcCCh-HHHHHHhcCCCEEEECCC
Confidence 689999999999999999999999 5555555433221 111 3468999999999 999999999999999999
Q ss_pred Cccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 89 PVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 89 ~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
.... ....++...+++|+.++.+++++|++. ++++|||+||. ++|+... ..+++|+.+..|. +.|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~-~vyg~~~----~~~~~E~~~~~~~------~~Y~~ 140 (313)
T 3ehe_A 73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTS-TVYGEAK----VIPTPEDYPTHPI------SLYGA 140 (313)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCG-GGGCSCS----SSSBCTTSCCCCC------SHHHH
T ss_pred CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCch-HHhCcCC----CCCCCCCCCCCCC------CHHHH
Confidence 6433 345667889999999999999999998 88999999998 6666654 6788998877765 77999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-C--CCC---CCCcceeHHHHHHHHHHhh
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-Q--SFA---FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~--~~~---~~~~~i~~~D~a~~~~~~~ 241 (322)
+|.++|.+++.++.++|++++++||+++|||.... .....++.++..+. + +++ +.++|+|++|+|++++.++
T Consensus 141 sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 218 (313)
T 3ehe_A 141 SKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGL 218 (313)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHh
Confidence 99999999999999999999999999999998654 33455666666664 2 333 7789999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC---CCCCC--ccCCCCccccchHHHHhhCCcc-cchhhhHHHHHHH
Q 020747 242 EVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL---RSGKL--EEKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIES 314 (322)
Q Consensus 242 ~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~---~~~~~--~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~ 314 (322)
+....+++|+++ ++.+|++|+++.+.+.++..+ .+... .........+|++|+++|||+| ++++++|+++++|
T Consensus 219 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~ 298 (313)
T 3ehe_A 219 RGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAVRD 298 (313)
T ss_dssp TCCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 965555688776 579999999999999987432 11110 0223345779999997799999 8999999999999
Q ss_pred HHHc
Q 020747 315 LMEK 318 (322)
Q Consensus 315 ~~~~ 318 (322)
++.+
T Consensus 299 ~~~~ 302 (313)
T 3ehe_A 299 LVED 302 (313)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9864
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=334.21 Aligned_cols=300 Identities=16% Similarity=0.140 Sum_probs=234.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC--CCCEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD--GCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 83 (322)
++|+|||||||||||++++++|+++|++|++++|+...... ....+.. ...++.++.+|++|+++++++++ ++|+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKRE-AIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTH-HHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHH-HHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 45799999999999999999999999999999997665432 1111110 13468899999999999999998 89999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+||.... .....+...+++|+.++.+++++|++. ++++||++||. ++|+... ..+++|+.+..+.
T Consensus 83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~-~~~g~~~----~~~~~e~~~~~~~------ 150 (341)
T 3enk_A 83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVKRIVFSSSA-TVYGVPE----RSPIDETFPLSAT------ 150 (341)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGBCSCS----SSSBCTTSCCBCS------
T ss_pred EECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEecc-eEecCCC----CCCCCCCCCCCCC------
Confidence 999997533 122344678999999999999999997 88999999998 6676654 6789999887765
Q ss_pred hhHHHHHHHHHHHHHHHHHHcC-ccEEEEcCCCccCCCCCCC--------CCccHHHHHHHHcCC-CC-----------C
Q 020747 163 EWYSLAKTLAEEAAWKFAKENG-IDLVAIHPGTVIGPFFQPI--------LNFGAEVILNLINGD-QS-----------F 221 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~-~~-----------~ 221 (322)
+.|+.||.++|++++.++.+++ ++++++||+++|||..... .......+.....+. .. -
T Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (341)
T 3enk_A 151 NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD 230 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTT
T ss_pred ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCC
Confidence 7799999999999999998885 9999999999999964211 012222344444432 11 1
Q ss_pred C-CCCcceeHHHHHHHHHHhhcC---CCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCC---CccCCCCccccchHH
Q 020747 222 A-FPYIFVEIRDVVYAHIRALEV---PKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGK---LEEKYQPTIKVSQER 293 (322)
Q Consensus 222 ~-~~~~~i~~~D~a~~~~~~~~~---~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~k 293 (322)
+ +.++|+|++|+|++++.++++ ...+++|+++ ++.+|++|+++.+.+.++.. .+.. ..........+|++|
T Consensus 231 g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k 309 (341)
T 3enk_A 231 GTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRA-VPYELVARRPGDVAECYANPAA 309 (341)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSC-CCEEEECCCTTCCSEECBCCHH
T ss_pred CCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCC-cceeeCCCCCCCccccccCHHH
Confidence 2 778999999999999999986 2345688876 68899999999999998743 1111 113344567899999
Q ss_pred H-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 294 A-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 294 ~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
+ +.|||+| ++++++|+++++|++.+..
T Consensus 310 ~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 310 AAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 9 8899999 9999999999999998653
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=328.53 Aligned_cols=289 Identities=20% Similarity=0.219 Sum_probs=233.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|||||||||||++|+++|+++|++|++++|+...... .. ..+++++.+|++|++ +.+++++ |+|||+|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~------~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~ 71 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-FV------NPSAELHVRDLKDYS-WGAGIKG-DVVFHFAA 71 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGG-GS------CTTSEEECCCTTSTT-TTTTCCC-SEEEECCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchh-hc------CCCceEEECccccHH-HHhhcCC-CEEEECCC
Confidence 479999999999999999999999999999987654321 11 346789999999998 8888888 99999999
Q ss_pred Cccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 89 PVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 89 ~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
.... ....++...+++|+.++.+++++|++. ++++|||+||. ++|+... ..+++|+.+..|. +.|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~-~vyg~~~----~~~~~e~~~~~p~------~~Y~~ 139 (312)
T 3ko8_A 72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSS-TVYGDAD----VIPTPEEEPYKPI------SVYGA 139 (312)
T ss_dssp SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEG-GGGCSCS----SSSBCTTSCCCCC------SHHHH
T ss_pred CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcH-HHhCCCC----CCCCCCCCCCCCC------ChHHH
Confidence 6433 334556788999999999999999998 88999999999 6666554 6788999887765 77999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-C--CCC---CCCcceeHHHHHHHHHHhh
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-Q--SFA---FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~--~~~---~~~~~i~~~D~a~~~~~~~ 241 (322)
+|.++|++++.+++++|++++++||+++|||.... .....++.++..+. + +++ +.++|+|++|+|++++.++
T Consensus 140 sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 217 (312)
T 3ko8_A 140 AKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAW 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS--SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC--ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHH
Confidence 99999999999999999999999999999998653 23445566666664 2 333 7789999999999999999
Q ss_pred cC---C-CCCccEEEe-cCCCCHHHHHHHHHHhCCCCC----CCCCC----ccCCCCccccchHHH-HhhCCcc-cchhh
Q 020747 242 EV---P-KASGRYLLA-GSVAQHSDILKFLREHYPTLL----RSGKL----EEKYQPTIKVSQERA-KSLGINF-TPWEV 306 (322)
Q Consensus 242 ~~---~-~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~----~~~~~~~~~~~~~k~-~~lg~~~-~~~~~ 306 (322)
++ + ..++.|+++ ++.++++|+++.+.+.++..+ .|... .........+|++|+ +.|||+| +++++
T Consensus 218 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 297 (312)
T 3ko8_A 218 KKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAE 297 (312)
T ss_dssp HHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHH
T ss_pred HhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHH
Confidence 87 3 344588777 578999999999999986432 11111 123345678999999 8899999 89999
Q ss_pred hHHHHHHHHHHcCC
Q 020747 307 GVRGCIESLMEKGF 320 (322)
Q Consensus 307 ~l~~~~~~~~~~~~ 320 (322)
+|+++++|++.+++
T Consensus 298 ~l~~~~~~~~~~~~ 311 (312)
T 3ko8_A 298 AVKKTAEDLAKELW 311 (312)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999998754
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=327.72 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=232.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+|+|||||||||||++|+++|+++| ++|++++|.......+.+..+.. ..+++++.+|++|++++++++.++|+|||
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED-DPRYTFVKGDVADYELVKELVRKVDGVVH 81 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhcc-CCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence 4789999999999999999999996 89999998753322222322211 35789999999999999999999999999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc-cEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI-KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
+||.... ....++...+++|+.++.+++++|.+. +. ++||++||. ++|+... ..+++|+++..+. +
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~-~vyg~~~----~~~~~E~~~~~~~------~ 149 (336)
T 2hun_A 82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE-NPEVRFVHVSTD-EVYGDIL----KGSFTENDRLMPS------S 149 (336)
T ss_dssp CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEEEEG-GGGCCCS----SSCBCTTBCCCCC------S
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEeccH-HHHCCCC----CCCcCCCCCCCCC------C
Confidence 9997532 112345688999999999999999987 54 799999999 6666543 5678898876665 6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHI 238 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~ 238 (322)
.|+.+|.++|.+++.++.+++++++++||+.+|||...+. .....++..+..+. ++++ +.++|+|++|+|++++
T Consensus 150 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~ 228 (336)
T 2hun_A 150 PYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPE-KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIE 228 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTT-SHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC-chHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHH
Confidence 7999999999999999998999999999999999986432 23344556666665 3323 6789999999999999
Q ss_pred HhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCCCC--CCCC-CccCCCCccccchHHH-HhhCCcc-cchhhhHHHHH
Q 020747 239 RALEVPKASGRYLLAG-SVAQHSDILKFLREHYPTLL--RSGK-LEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCI 312 (322)
Q Consensus 239 ~~~~~~~~~g~~~~~~-~~~~~~e~~~~i~~~~~~~~--~~~~-~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~ 312 (322)
.+++++..++.|++++ ..+|++|+++.+++.++... +... ........+.+|++|+ +.|||+| ++++++|++++
T Consensus 229 ~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~ 308 (336)
T 2hun_A 229 LVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTI 308 (336)
T ss_dssp HHHHHCCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHH
T ss_pred HHHhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 9998765555888774 67999999999999987531 1110 0111223567899999 7799999 89999999999
Q ss_pred HHHHHc
Q 020747 313 ESLMEK 318 (322)
Q Consensus 313 ~~~~~~ 318 (322)
+|++.+
T Consensus 309 ~~~~~~ 314 (336)
T 2hun_A 309 DWYLKN 314 (336)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=331.81 Aligned_cols=293 Identities=19% Similarity=0.163 Sum_probs=232.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHH--CCCeEEEEEeCCCCcCh--------hhhhhccCCCCcEEEEEccCCCccchH
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQ--RGYTVKATVRDPNSPKT--------EHLRELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
.+++|+|||||||||||++|+++|++ +|++|++++|+.+.... ...... ...++.++.+|++|+++++
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTTCHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCCCHHHHH
Confidence 35678999999999999999999999 99999999997652110 011111 1345789999999999999
Q ss_pred Hh-hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 75 SA-VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 75 ~~-~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
++ ..++|+|||+||.... ...++...+++|+.++.+++++|++. +++ |||+||. ++|+... . +++|+++.
T Consensus 85 ~~~~~~~D~vih~A~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~-~vyg~~~----~-~~~E~~~~ 155 (362)
T 3sxp_A 85 RLEKLHFDYLFHQAAVSDT-TMLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSA-GVYGNTK----A-PNVVGKNE 155 (362)
T ss_dssp HHTTSCCSEEEECCCCCGG-GCCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEG-GGGCSCC----S-SBCTTSCC
T ss_pred HhhccCCCEEEECCccCCc-cccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcH-HHhCCCC----C-CCCCCCCC
Confidence 98 7899999999997544 34566899999999999999999987 766 9999998 6776653 3 89999887
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCC--CCCC---CCC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGD--QSFA---FPY 225 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~--~~~~---~~~ 225 (322)
.|. ++|+.+|.++|.+++.++.+ ++++++||+++|||+..... .....++..+..+. .+++ +.+
T Consensus 156 ~p~------~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (362)
T 3sxp_A 156 SPE------NVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLR 227 (362)
T ss_dssp CCS------SHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEE
T ss_pred CCC------ChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEE
Confidence 776 78999999999999988765 89999999999999875431 23455666677776 3333 788
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-Cc-cCCCCccccchHHH-HhhCCcc
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGK-LE-EKYQPTIKVSQERA-KSLGINF 301 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~~k~-~~lg~~~ 301 (322)
+|+|++|+|++++.+++++. .|+|+++ ++.++++|+++.+.+.+|..++... .. ........+|++|+ +.|||+|
T Consensus 228 ~~i~v~Dva~ai~~~~~~~~-~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 306 (362)
T 3sxp_A 228 DFVYIEDVIQANVKAMKAQK-SGVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTP 306 (362)
T ss_dssp ECEEHHHHHHHHHHHTTCSS-CEEEEESCSCEEEHHHHHHHHHHHHCCCEEECCC-------CCCCBCCHHHHHHHCCCC
T ss_pred ccEEHHHHHHHHHHHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHcCCCceEECCCCCcCcccceecCHHHHHHHhCCCC
Confidence 99999999999999999875 4588776 6889999999999999882221111 11 23456688999999 8899999
Q ss_pred -cchhhhHHHHHHHHHH
Q 020747 302 -TPWEVGVRGCIESLME 317 (322)
Q Consensus 302 -~~~~~~l~~~~~~~~~ 317 (322)
++++++|+++++|++.
T Consensus 307 ~~~l~e~l~~~~~~~~~ 323 (362)
T 3sxp_A 307 LYDLESGIKDYLPHIHA 323 (362)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 8999999999999975
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=332.71 Aligned_cols=288 Identities=20% Similarity=0.209 Sum_probs=230.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.++|+|||||||||||++|+++|+++|++|++++|+... .+++++.+|++|++++.++++++|+|||
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------------~~~~~~~~Dl~d~~~~~~~~~~~d~vih 83 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------------TGGEEVVGSLEDGQALSDAIMGVSAVLH 83 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------------SCCSEEESCTTCHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------------CCccEEecCcCCHHHHHHHHhCCCEEEE
Confidence 346899999999999999999999999999999998643 2467899999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+|+...... ..+...+++|+.++.+++++|++. ++++|||+||. .+|+.... ...+++|+++..|. +.|
T Consensus 84 ~A~~~~~~~-~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~V~~SS~-~vyg~~~~--~~~~~~E~~~~~~~------~~Y 152 (347)
T 4id9_A 84 LGAFMSWAP-ADRDRMFAVNVEGTRRLLDAASAA-GVRRFVFASSG-EVYPENRP--EFLPVTEDHPLCPN------SPY 152 (347)
T ss_dssp CCCCCCSSG-GGHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEG-GGTTTTSC--SSSSBCTTSCCCCC------SHH
T ss_pred CCcccCcch-hhHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCH-HHhCCCCC--CCCCcCCCCCCCCC------ChH
Confidence 999754332 233789999999999999999997 89999999999 66665211 16689999887775 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCcc-------------CCCCCCC----------CCccHHHHHHHHcCCC--C
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVI-------------GPFFQPI----------LNFGAEVILNLINGDQ--S 220 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~-------------G~~~~~~----------~~~~~~~~~~~~~g~~--~ 220 (322)
+.+|.++|++++.++++++++++++||+.+| ||..... ......++..+..|.+ +
T Consensus 153 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (347)
T 4id9_A 153 GLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHI 232 (347)
T ss_dssp HHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999 7654321 1223344555555553 2
Q ss_pred CC---CCCcc----eeHHHHHHHHHHhhcCC-CCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCccccch
Q 020747 221 FA---FPYIF----VEIRDVVYAHIRALEVP-KASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQ 291 (322)
Q Consensus 221 ~~---~~~~~----i~~~D~a~~~~~~~~~~-~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
++ +.++| +|++|+|++++.+++++ ..+++|+++ ++.+|+.|+++.+.+.++... +....+.......+|+
T Consensus 233 ~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~p~~~~~~~~d~ 311 (347)
T 4id9_A 233 LARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPI-VTVDFPGDGVYYHTSN 311 (347)
T ss_dssp EEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCE-EEEECSSCCCBCCBCC
T ss_pred eCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCC-ceeeCCCcccccccCH
Confidence 22 67888 99999999999999987 345588776 678999999999999987432 1111122223778999
Q ss_pred HHH-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 292 ERA-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 292 ~k~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+|+ +.|||+| ++++++|+++++|++.+
T Consensus 312 ~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 340 (347)
T 4id9_A 312 ERIRNTLGFEAEWTMDRMLEEAATARRQR 340 (347)
T ss_dssp HHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhh
Confidence 999 7799999 89999999999999864
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=323.28 Aligned_cols=290 Identities=19% Similarity=0.215 Sum_probs=230.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vi 84 (322)
++|+|||||||||||++|+++|+++|++|++++|+... . . + +++++.+|++|++++++++++ +|+||
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~-~----l-----~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 79 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-K-L----P-----NVEMISLDIMDSQRVKKVISDIKPDYIF 79 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-C-C----T-----TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-c-c----c-----eeeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999999999999998654 1 1 1 578999999999999999885 99999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+||.... ....++...+++|+.++.+++++|.+..++++||++||. ++|+... ....+++|+++..+. +
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~-~v~g~~~--~~~~~~~E~~~~~~~------~ 150 (321)
T 2pk3_A 80 HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSS-EEYGMIL--PEESPVSEENQLRPM------S 150 (321)
T ss_dssp ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEG-GGTBSCC--GGGCSBCTTSCCBCC------S
T ss_pred EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccH-HhcCCCC--CCCCCCCCCCCCCCC------C
Confidence 99997543 223456789999999999999999765358899999999 5555431 015678999877665 6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHc---C--C--CCCC---CCCcceeHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN---G--D--QSFA---FPYIFVEIRDV 233 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~---g--~--~~~~---~~~~~i~~~D~ 233 (322)
.|+.+|.++|.+++.+++++|++++++||+++|||..... .....++..+.. | . ..++ +.++|+|++|+
T Consensus 151 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dv 229 (321)
T 2pk3_A 151 PYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDI 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC-chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHH
Confidence 7999999999999999988899999999999999986542 223344444444 5 3 2222 67899999999
Q ss_pred HHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC----CCCCCccCCCCccccchHHH-HhhCCcc-cchhh
Q 020747 234 VYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL----RSGKLEEKYQPTIKVSQERA-KSLGINF-TPWEV 306 (322)
Q Consensus 234 a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~ 306 (322)
|++++.+++++..++.|+++ +..++++|+++.+.+.+|... .|............+|++|+ +.|||+| +++++
T Consensus 230 a~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e 309 (321)
T 2pk3_A 230 VQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEK 309 (321)
T ss_dssp HHHHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHH
Confidence 99999999876555688876 578999999999999987421 12111122345688999999 7799999 79999
Q ss_pred hHHHHHHHHHH
Q 020747 307 GVRGCIESLME 317 (322)
Q Consensus 307 ~l~~~~~~~~~ 317 (322)
+|+++++|+++
T Consensus 310 ~l~~~~~~~~~ 320 (321)
T 2pk3_A 310 SLFEILQSYRQ 320 (321)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999975
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=335.94 Aligned_cols=299 Identities=16% Similarity=0.232 Sum_probs=232.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC-CccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL-EEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~v 83 (322)
|++|+|||||||||||++|+++|+++ |++|++++|+.+.... +.. ..+++++.+|++ |.+.++++++++|+|
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--~~~----~~~v~~~~~Dl~~d~~~~~~~~~~~d~V 95 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD--LVK----HERMHFFEGDITINKEWVEYHVKKCDVI 95 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG--GGG----STTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh--hcc----CCCeEEEeCccCCCHHHHHHHhccCCEE
Confidence 55689999999999999999999998 9999999998754321 111 257999999999 999999999999999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccc-cccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL-CKEN 161 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~-~~~~ 161 (322)
||+||.... ....++...+++|+.++.+++++|++. + ++|||+||. ++|+... ..+++|++++.+.. ...+
T Consensus 96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~-~vyg~~~----~~~~~e~~~~~~~~p~~~p 168 (372)
T 3slg_A 96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTS-EVYGMCA----DEQFDPDASALTYGPINKP 168 (372)
T ss_dssp EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCG-GGGBSCC----CSSBCTTTCCEEECCTTCT
T ss_pred EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcH-HHhCCCC----CCCCCccccccccCCCCCC
Confidence 999997543 122345688899999999999999998 7 899999998 6777654 56778877542111 1122
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC-------CccHHHHHHHHcCC--CCCC---CCCccee
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL-------NFGAEVILNLINGD--QSFA---FPYIFVE 229 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~-------~~~~~~~~~~~~g~--~~~~---~~~~~i~ 229 (322)
.+.|+.+|.++|++++.++++ +++++++||+++|||...+.. .....++..+..|. .+++ +.++|+|
T Consensus 169 ~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 247 (372)
T 3slg_A 169 RWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTY 247 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEE
T ss_pred CCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEE
Confidence 367999999999999999888 999999999999999865311 13345666677776 2332 7889999
Q ss_pred HHHHHHHHHHhhcCCC---CCccEEEec--CCCCHHHHHHHHHHhCCCCC----CCCCCc-------------cCCCCcc
Q 020747 230 IRDVVYAHIRALEVPK---ASGRYLLAG--SVAQHSDILKFLREHYPTLL----RSGKLE-------------EKYQPTI 287 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~---~~g~~~~~~--~~~~~~e~~~~i~~~~~~~~----~~~~~~-------------~~~~~~~ 287 (322)
++|+|++++.+++++. .+++|++++ +.+|++|+++.+.+.++... .|.... .......
T Consensus 248 v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (372)
T 3slg_A 248 VDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNR 327 (372)
T ss_dssp HHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CCC
T ss_pred HHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCcccccee
Confidence 9999999999998864 455888776 48999999999999875321 010000 1244567
Q ss_pred ccchHHH-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 288 KVSQERA-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 288 ~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
.+|++|+ +.|||+| ++++++|+++++|++.+
T Consensus 328 ~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 360 (372)
T 3slg_A 328 VPKIENTMQELGWAPQFTFDDALRQIFEAYRGH 360 (372)
T ss_dssp CBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTC
T ss_pred ecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 8899999 7899999 89999999999999753
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=324.18 Aligned_cols=299 Identities=16% Similarity=0.196 Sum_probs=232.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
||+|||||||||||++|+++|+++ |++|++++|+........+..+. ..+++++.+|++|+++++++++++|+|||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL--GDRVELVVGDIADAELVDKLAAKADAIVH 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC--SSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhc--cCCeEEEECCCCCHHHHHHHhhcCCEEEE
Confidence 379999999999999999999998 89999999976432222333222 25789999999999999999999999999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCC--------CCCCccccCCCCCCcc
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETP--------MTPDVVIDETWFSNPV 156 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~--------~~~~~~~~E~~~~~~~ 156 (322)
+||.... ....++...+++|+.++.+++++|.+. ++ +|||+||. ++|+.... .....+++|+++..+.
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~-~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (348)
T 1oc2_A 82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTD-EVYGDLPLREDLPGHGEGPGEKFTAETNYNPS 158 (348)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEG-GGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCC
T ss_pred CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEeccc-ceeCCCcccccccccccccCCCcCCCCCCCCC
Confidence 9997532 112345689999999999999999998 76 99999999 55554320 0002578888776655
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC---CCCcceeHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA---FPYIFVEIR 231 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~ 231 (322)
+.|+.+|.++|.+++.++.++|++++++||+.+|||..... .....++..+..+.+ +++ +.++|+|++
T Consensus 159 ------~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 231 (348)
T 1oc2_A 159 ------SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFIPRQITNILAGIKPKLYGEGKNVRDWIHTN 231 (348)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHHHHHHHHHHHTCCCEEETTSCCEEECEEHH
T ss_pred ------CccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc-chHHHHHHHHHcCCCceEecCCCceEeeEEHH
Confidence 67999999999999999988899999999999999986432 233445566666652 222 678999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCCCCc--cCCCCccccchHHH-HhhCCcc-cc-h
Q 020747 232 DVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-RSGKLE--EKYQPTIKVSQERA-KSLGINF-TP-W 304 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~~~--~~~~~~~~~~~~k~-~~lg~~~-~~-~ 304 (322)
|+|++++.+++++..++.|+++ +..++++|+++.+.+.++... ...... ......+.+|++|+ +.|||+| ++ +
T Consensus 232 Dva~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~ 311 (348)
T 1oc2_A 232 DHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDF 311 (348)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCH
T ss_pred HHHHHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCCCcH
Confidence 9999999999876545588777 568999999999999987432 111111 12234567899999 7799999 77 9
Q ss_pred hhhHHHHHHHHHHc
Q 020747 305 EVGVRGCIESLMEK 318 (322)
Q Consensus 305 ~~~l~~~~~~~~~~ 318 (322)
+++|+++++|++.+
T Consensus 312 ~~~l~~~~~~~~~~ 325 (348)
T 1oc2_A 312 SEGLEETIQWYTDN 325 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=323.20 Aligned_cols=296 Identities=18% Similarity=0.214 Sum_probs=232.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHC---C---CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR---G---YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|+|||||||||||++|+++|+++ | ++|++++|+........+..+. ...+++++.+|++|++++++++.++|+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 79 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFVHGDIRDAGLLARELRGVDA 79 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT-TCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc-cCCCeEEEEcCCCCHHHHHHHhcCCCE
Confidence 47999999999999999999997 8 9999999975332222232222 135789999999999999999999999
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
|||+||.... ....++...+++|+.++.+++++|.+. ++++||++||. ++|+... ..+++|+++..+.
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~-~vyg~~~----~~~~~E~~~~~~~----- 148 (337)
T 1r6d_A 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTN-QVYGSID----SGSWTESSPLEPN----- 148 (337)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEG-GGGCCCS----SSCBCTTSCCCCC-----
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecch-HHhCCCC----CCCCCCCCCCCCC-----
Confidence 9999997532 112345688999999999999999997 88999999999 6666543 4678888876665
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYA 236 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~ 236 (322)
+.|+.+|.++|.+++.++++++++++++||+.+|||...+. .....++..+..+. ++++ +.++|+|++|+|++
T Consensus 149 -~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 226 (337)
T 1r6d_A 149 -SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRG 226 (337)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC-ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHH
Confidence 67999999999999999988899999999999999986432 23344556666665 2223 67899999999999
Q ss_pred HHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC--CCCCC-ccCCCCccccchHHH-HhhCCcc-cchhhhHHH
Q 020747 237 HIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL--RSGKL-EEKYQPTIKVSQERA-KSLGINF-TPWEVGVRG 310 (322)
Q Consensus 237 ~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~--~~~~~-~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~ 310 (322)
++.+++++..++.|+++ +..+|++|+++.+.+.++... +.... .......+.+|++|+ +.|||+| ++++++|++
T Consensus 227 ~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~ 306 (337)
T 1r6d_A 227 IALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLAR 306 (337)
T ss_dssp HHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999876555588877 467999999999999987431 11100 011223457899999 7799999 899999999
Q ss_pred HHHHHHHc
Q 020747 311 CIESLMEK 318 (322)
Q Consensus 311 ~~~~~~~~ 318 (322)
+++|++.+
T Consensus 307 ~~~~~~~~ 314 (337)
T 1r6d_A 307 TVRWYREN 314 (337)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=327.01 Aligned_cols=300 Identities=19% Similarity=0.173 Sum_probs=234.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc---C--CCCcEEEEEccCCCccchHHhhCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD---G--ATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
+++|+|||||||||||++|+++|+++|++|++++|+..... +.+..+. . ...+++++.+|++|+++++++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQ-RNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCH-HHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccch-hhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 45689999999999999999999999999999999764321 1111110 0 0246899999999999999999999
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+||.... ....++...+++|+.++.+++++|++. ++++||++||. .+|+... ..+++|+++..|.
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~-~~~~~~~----~~~~~E~~~~~~~--- 174 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASS-STYGDHP----GLPKVEDTIGKPL--- 174 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEG-GGGTTCC----CSSBCTTCCCCCC---
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccH-HhcCCCC----CCCCCCCCCCCCC---
Confidence 999999997532 112345688999999999999999997 88999999999 5565543 5678899887665
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCCCC--CC---CCCcceeHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGDQS--FA---FPYIFVEIR 231 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~--~~---~~~~~i~~~ 231 (322)
+.|+.+|.++|.+++.++++++++++++||+.+|||...+.. .....++..+..|.++ ++ +.++|+|++
T Consensus 175 ---~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~ 251 (352)
T 1sb8_A 175 ---SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIE 251 (352)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHH
Confidence 679999999999999999888999999999999999865431 2234455566666632 22 678999999
Q ss_pred HHHHHHHHhhcCC-C-CCccEEEe-cCCCCHHHHHHHHHHhC---CCCCC--CCCCc--cCCCCccccchHHH-HhhCCc
Q 020747 232 DVVYAHIRALEVP-K-ASGRYLLA-GSVAQHSDILKFLREHY---PTLLR--SGKLE--EKYQPTIKVSQERA-KSLGIN 300 (322)
Q Consensus 232 D~a~~~~~~~~~~-~-~~g~~~~~-~~~~~~~e~~~~i~~~~---~~~~~--~~~~~--~~~~~~~~~~~~k~-~~lg~~ 300 (322)
|+|++++.++... . .+++|+++ ++.+|++|+++.+.+.+ +.... +.... ........+|++|+ +.|||+
T Consensus 252 Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 331 (352)
T 1sb8_A 252 NTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYA 331 (352)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCC
T ss_pred HHHHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCC
Confidence 9999999998763 2 34588776 67899999999999988 63211 11111 22335667899999 789999
Q ss_pred c-cchhhhHHHHHHHHHHc
Q 020747 301 F-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 301 ~-~~~~~~l~~~~~~~~~~ 318 (322)
| ++++|+|+++++|++++
T Consensus 332 p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 332 PKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9 89999999999999764
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=328.19 Aligned_cols=288 Identities=17% Similarity=0.176 Sum_probs=226.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
|+|||||||||||++|+++|+++ |++|++++|+.... ... .+++++.+|++|+++++++++ ++|+||
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~d~vi 73 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT--DVV-------NSGPFEVVNALDFNQIEHLVEVHKITDIY 73 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC--HHH-------HSSCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc--ccc-------CCCceEEecCCCHHHHHHHHhhcCCCEEE
Confidence 78999999999999999999999 89999999976542 111 235788999999999999998 899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
|+||........++...+++|+.++.+++++|++. ++++|||+||. ++|+.... ..+++|+++..|. +.
T Consensus 74 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~-~~~~~~~~---~~~~~e~~~~~~~------~~ 142 (312)
T 2yy7_A 74 LMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSI-AVFGPTTP---KENTPQYTIMEPS------TV 142 (312)
T ss_dssp ECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCSEEECCEEG-GGCCTTSC---SSSBCSSCBCCCC------SH
T ss_pred ECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccH-HHhCCCCC---CCCccccCcCCCC------ch
Confidence 99997543222445788999999999999999997 88999999999 56654321 4577888776665 67
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC---ccHHHHHHHH-cCC-CCCC---CCCcceeHHHHHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN---FGAEVILNLI-NGD-QSFA---FPYIFVEIRDVVYA 236 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~---~~~~~~~~~~-~g~-~~~~---~~~~~i~~~D~a~~ 236 (322)
|+.+|.++|.+++.+++++|++++++||+.+|||...+... .....+.+.+ .+. ..+. +.++|+|++|+|++
T Consensus 143 Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 222 (312)
T 2yy7_A 143 YGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDA 222 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHH
Confidence 99999999999999998889999999999999987543321 1223333333 333 2232 78999999999999
Q ss_pred HHHhhcCCCC----CccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc----cCCCCccccchHHH-HhhCCcc-cchhh
Q 020747 237 HIRALEVPKA----SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE----EKYQPTIKVSQERA-KSLGINF-TPWEV 306 (322)
Q Consensus 237 ~~~~~~~~~~----~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~k~-~~lg~~~-~~~~~ 306 (322)
++.+++++.. ++.|+++++.+|++|+++.+.+.+|...++.... ........+|++|+ +.|||+| +++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~ 302 (312)
T 2yy7_A 223 TINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLES 302 (312)
T ss_dssp HHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTTCTTCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHHH
T ss_pred HHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHHCCCCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHHH
Confidence 9999987643 2689888888999999999999987433322110 01123457899999 7799999 89999
Q ss_pred hHHHHHHHHH
Q 020747 307 GVRGCIESLM 316 (322)
Q Consensus 307 ~l~~~~~~~~ 316 (322)
+|+++++|++
T Consensus 303 ~l~~~~~~~k 312 (312)
T 2yy7_A 303 MTKDMIEHLS 312 (312)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999974
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=322.06 Aligned_cols=298 Identities=19% Similarity=0.150 Sum_probs=234.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vi 84 (322)
++|+|||||||||||++|+++|+++|++|++++|+.+......+..+. ...+++++.+|++|++++++++++ +|+||
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi 91 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKAQPQEVY 91 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 358999999999999999999999999999999987553222222221 134689999999999999999885 79999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc-cEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI-KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
|+||.... ....++...+++|+.++.+++++|++. ++ ++||++||. ++|+... ..+++|+++..|.
T Consensus 92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~-~v~g~~~----~~~~~E~~~~~p~------ 159 (335)
T 1rpn_A 92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTS-EMFGLIQ----AERQDENTPFYPR------ 159 (335)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEG-GGGCSCS----SSSBCTTSCCCCC------
T ss_pred ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCH-HHhCCCC----CCCCCcccCCCCC------
Confidence 99997543 123456789999999999999999998 75 899999998 6666543 5678999887765
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CC--CC---CCCcceeHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QS--FA---FPYIFVEIRDVV 234 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~--~~---~~~~~i~~~D~a 234 (322)
+.|+.+|.++|.+++.++++++++++++||+++|||....... ....++..+..|. +. ++ +.++|+|++|+|
T Consensus 160 ~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva 239 (335)
T 1rpn_A 160 SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYV 239 (335)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHH
Confidence 6799999999999999998889999999999999998653221 1233445556665 32 22 678999999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-----CCCC-CccCCCCccccchHHH-HhhCCcc-cchh
Q 020747 235 YAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-----RSGK-LEEKYQPTIKVSQERA-KSLGINF-TPWE 305 (322)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~k~-~~lg~~~-~~~~ 305 (322)
++++.+++++. ++.|+++ ++.+|++|+++.+.+.+|... ++.. ..........+|++|+ +.|||+| ++++
T Consensus 240 ~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~ 318 (335)
T 1rpn_A 240 EAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLD 318 (335)
T ss_dssp HHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHH
T ss_pred HHHHHHHhcCC-CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHH
Confidence 99999998765 4788776 578999999999999987531 1111 0122334567899999 7899999 8999
Q ss_pred hhHHHHHHHHHHc
Q 020747 306 VGVRGCIESLMEK 318 (322)
Q Consensus 306 ~~l~~~~~~~~~~ 318 (322)
++|+++++|++++
T Consensus 319 e~l~~~~~~~~~~ 331 (335)
T 1rpn_A 319 ELIRMMVEADLRR 331 (335)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=327.95 Aligned_cols=301 Identities=16% Similarity=0.129 Sum_probs=231.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~v 83 (322)
+++|+|||||||||||++|+++|+++|++|++++|+...... ....+. ...+++++.+|++|++++.+++++ +|+|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 84 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS-LFETAR-VADGMQSEIGDIRDQNKLLESIREFQPEIV 84 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC-HHHHTT-TTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccch-hhHhhc-cCCceEEEEccccCHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999999999997654321 111111 134688999999999999999886 8999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+||.... .....+...+++|+.++.+++++|.+..++++||++||. .+|+.... ..+++|+++..+.
T Consensus 85 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~-~vyg~~~~---~~~~~E~~~~~~~------ 154 (357)
T 1rkx_A 85 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSD-KCYDNKEW---IWGYRENEAMGGY------ 154 (357)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCG-GGBCCCCS---SSCBCTTSCBCCS------
T ss_pred EECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCH-HHhCCCCc---CCCCCCCCCCCCC------
Confidence 999996322 223345688999999999999999987238899999999 66665431 3467888766554
Q ss_pred hhHHHHHHHHHHHHHHHHHHc---------CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC-CC-C--CCCccee
Q 020747 163 EWYSLAKTLAEEAAWKFAKEN---------GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ-SF-A--FPYIFVE 229 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~---------~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~-~--~~~~~i~ 229 (322)
+.|+.+|.++|++++.++.++ |++++++||+.+|||+..........++..+..|.+ .+ . +.++|+|
T Consensus 155 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ 234 (357)
T 1rkx_A 155 DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQH 234 (357)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEE
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeeccEe
Confidence 679999999999999998765 999999999999999864322334556666666662 22 2 7789999
Q ss_pred HHHHHHHHHHhhcC----C-CCCccEEEec---CCCCHHHHHHHHHHhCCCC-CC--CCCCccCCCCccccchHHH-Hhh
Q 020747 230 IRDVVYAHIRALEV----P-KASGRYLLAG---SVAQHSDILKFLREHYPTL-LR--SGKLEEKYQPTIKVSQERA-KSL 297 (322)
Q Consensus 230 ~~D~a~~~~~~~~~----~-~~~g~~~~~~---~~~~~~e~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~k~-~~l 297 (322)
++|+|++++.++++ + ..+++|++++ +.+|++|+++.+.+.+|.. ++ +............+|++|+ +.|
T Consensus 235 v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 314 (357)
T 1rkx_A 235 VLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQL 314 (357)
T ss_dssp THHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHh
Confidence 99999999998874 2 3456898773 5899999999999998642 11 1111122345678999999 789
Q ss_pred CCcc-cchhhhHHHHHHHHHHc
Q 020747 298 GINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 298 g~~~-~~~~~~l~~~~~~~~~~ 318 (322)
||+| ++++++|+++++|++.+
T Consensus 315 G~~p~~~l~e~l~~~~~~~~~~ 336 (357)
T 1rkx_A 315 GWHPRWNLNTTLEYIVGWHKNW 336 (357)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCcHHHHHHHHHHHHHHH
Confidence 9999 89999999999999763
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=319.51 Aligned_cols=296 Identities=20% Similarity=0.243 Sum_probs=226.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|||||||||||++|+++|+++|++|++++|+.+... .+. ..+++++.+|++|+++++++++++|+|||+|
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~l~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQ--RLA-----YLEPECRVAEMLDHAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGG--GGG-----GGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhh--hhc-----cCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 468999999999999999999999999999999865431 111 1357899999999999999999999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
|.... +..++...+++|+.++.+++++|.+. ++++|||+||. ++|+.... ...+ +|+++..|... ..+.|+.
T Consensus 86 ~~~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~-~~~~~~~~--~~~~-~E~~~~~p~~~--~~~~Y~~ 157 (342)
T 2x4g_A 86 GYYPS-RPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSA-YAMPRHPQ--GLPG-HEGLFYDSLPS--GKSSYVL 157 (342)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCG-GGSCCCTT--SSCB-CTTCCCSSCCT--TSCHHHH
T ss_pred ccCcC-CCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCH-HhhCcCCC--CCCC-CCCCCCCcccc--ccChHHH
Confidence 97543 23456789999999999999999998 88999999999 55554331 0134 88888776210 0267999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCC-CCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcCC
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF-QPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~-~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
+|.++|++++.+++. |++++++||+.+|||.. .+. ...++..+..|. ..++ +.++|+|++|+|++++.+++++
T Consensus 158 sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~ 233 (342)
T 2x4g_A 158 CKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT---TGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERG 233 (342)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS---TTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc---HHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCC
Confidence 999999999999887 99999999999999986 321 334455566665 2225 7789999999999999999876
Q ss_pred CCCccEEEecCCCCHHHHHHHHHHhCCCC---CCCCCCc-------------------------cCCCCccccchHHH-H
Q 020747 245 KASGRYLLAGSVAQHSDILKFLREHYPTL---LRSGKLE-------------------------EKYQPTIKVSQERA-K 295 (322)
Q Consensus 245 ~~~g~~~~~~~~~~~~e~~~~i~~~~~~~---~~~~~~~-------------------------~~~~~~~~~~~~k~-~ 295 (322)
..++.|+++++.+|++|+++.+.+.+|.. .+|.+.. ........+|++|+ +
T Consensus 234 ~~g~~~~v~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 313 (342)
T 2x4g_A 234 RIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKARE 313 (342)
T ss_dssp CTTCEEEECCEEEEHHHHHHHHHHHHTCCCCEEECHHHHHHHHHHHHC----------------CCTTCCCCBCCHHHHH
T ss_pred CCCceEEEcCCcccHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChHHHHH
Confidence 55568887753399999999999987643 1222110 01124677899999 7
Q ss_pred hhCC-cccchhhhHHHHHHHHHHcCCCC
Q 020747 296 SLGI-NFTPWEVGVRGCIESLMEKGFLS 322 (322)
Q Consensus 296 ~lg~-~~~~~~~~l~~~~~~~~~~~~~~ 322 (322)
.||| +|++++++|+++++|++++++++
T Consensus 314 ~lG~~~p~~~~~~l~~~~~~~~~~g~~~ 341 (342)
T 2x4g_A 314 ELGFFSTTALDDTLLRAIDWFRDNGYFN 341 (342)
T ss_dssp HHCCCCCSCHHHHHHHHHHHHHHTTCCC
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 7999 99999999999999999998764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=320.95 Aligned_cols=287 Identities=22% Similarity=0.279 Sum_probs=226.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+||||||+||||++++++|+++|++|++++|...... . .+ ..+++++.+|++|+++++++++ ++|+|||+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~-~---~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 73 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR-E---NV---PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQ 73 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG-G---GS---CTTCCEECCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch-h---hc---ccCeEEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence 47999999999999999999999999999988543221 1 11 1346788999999999999988 89999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC-CCCCCCCccccCCCCCCcccccccchh
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN-ETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~-~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
|+.... ....++...+++|+.|+.+++++|++. ++++||++||..++|+. .. ..+++|+++..|. +.
T Consensus 74 a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~~~----~~~~~E~~~~~~~------~~ 142 (311)
T 2p5y_A 74 AAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEVPE----GERAEETWPPRPK------SP 142 (311)
T ss_dssp CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCCCT----TCCBCTTSCCCCC------SH
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCCCC----CCCcCCCCCCCCC------Ch
Confidence 986532 122345678999999999999999987 78999999998566654 32 4578888876654 67
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC--CccHHHHHHHHcCCC--CC-----C---CCCcceeHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL--NFGAEVILNLINGDQ--SF-----A---FPYIFVEIRD 232 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~--~~~~~~~~~~~~g~~--~~-----~---~~~~~i~~~D 232 (322)
|+.||.++|.+++.+++++|++++++||+++|||...... .....++.++..+.+ ++ + +.++|+|++|
T Consensus 143 Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 222 (311)
T 2p5y_A 143 YAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGD 222 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHH
Confidence 9999999999999999888999999999999999865432 123344555556652 23 3 6789999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC-C---CCCCCccCCCCccccchHHH-HhhCCcc-cchh
Q 020747 233 VVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL-L---RSGKLEEKYQPTIKVSQERA-KSLGINF-TPWE 305 (322)
Q Consensus 233 ~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~---~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~ 305 (322)
+|++++.+++++ ++.|+++ ++.+|++|+++.+.+.++.. + .|.. ........+|++|+ + |||+| ++++
T Consensus 223 va~a~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~d~~k~~~-lg~~p~~~~~ 297 (311)
T 2p5y_A 223 VAEAHALALFSL--EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPR--PGDLERSVLSPLKLMA-HGWRPKVGFQ 297 (311)
T ss_dssp HHHHHHHHHHHC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCC--TTCCSBCCBCCHHHHT-TTCCCSSCHH
T ss_pred HHHHHHHHHhCC--CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCC--ccchhhccCCHHHHHH-CCCCCCCCHH
Confidence 999999999864 5688776 57899999999999988642 1 1111 12335678999999 6 99999 9999
Q ss_pred hhHHHHHHHHHHc
Q 020747 306 VGVRGCIESLMEK 318 (322)
Q Consensus 306 ~~l~~~~~~~~~~ 318 (322)
++|+++++|++.+
T Consensus 298 ~~l~~~~~~~~~~ 310 (311)
T 2p5y_A 298 EGIRLTVDHFRGA 310 (311)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999764
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=324.89 Aligned_cols=296 Identities=21% Similarity=0.167 Sum_probs=225.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++|+|||||||||||++|+++|+++| ++|++++|+..... +.+. ...+++++.+|++|+++++++++++|+||
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~l~----~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi 104 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK-INVP----DHPAVRFSETSITDDALLASLQDEYDYVF 104 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG-GGSC----CCTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch-hhcc----CCCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence 456899999999999999999999999 99999999765431 1111 13568999999999999999999999999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCcccc--CCC---CC-Cccc
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVID--ETW---FS-NPVL 157 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~--E~~---~~-~~~~ 157 (322)
|+||.... ....++...+++|+.++.+++++|++..++++||++||. ++|+... ..+++ |++ +. .|.
T Consensus 105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~-~vyg~~~----~~~~~~~E~~~~~~~~~~~- 178 (377)
T 2q1s_A 105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAG-CSIAEKT----FDDAKATEETDIVSLHNND- 178 (377)
T ss_dssp ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC-------------------CCCCCCCSSCCC-
T ss_pred ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCH-HHcCCCC----CCCcCcccccccccccCCC-
Confidence 99997532 112345789999999999999999875367899999998 6666543 45677 877 43 333
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCC---------CCC---CCccHHHHHHHHcCCC--CCC-
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------QPI---LNFGAEVILNLINGDQ--SFA- 222 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~---------~~~---~~~~~~~~~~~~~g~~--~~~- 222 (322)
++|+.+|.++|.+++.++++++++++++||+.+|||.. .+. ......++..+..+.+ +++
T Consensus 179 -----~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 253 (377)
T 2q1s_A 179 -----SPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENG 253 (377)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGG
T ss_pred -----CchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCC
Confidence 67999999999999999988899999999999999986 221 1234455666666662 333
Q ss_pred --CCCcceeHHHHHHH-HHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCC-CCccCCCC-ccccchHHH-
Q 020747 223 --FPYIFVEIRDVVYA-HIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-RSG-KLEEKYQP-TIKVSQERA- 294 (322)
Q Consensus 223 --~~~~~i~~~D~a~~-~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~-~~~~~~~~-~~~~~~~k~- 294 (322)
+.++|+|++|+|++ ++.+++++. .|.|+++ ++.+|++|+++.+.+.+|... +.. ........ ...+|++|+
T Consensus 254 g~~~~~~i~v~Dva~a~i~~~~~~~~-~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~ 332 (377)
T 2q1s_A 254 GVATRDFIFVEDVANGLIACAADGTP-GGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKAR 332 (377)
T ss_dssp GCCEECCEEHHHHHHHHHHHHHHCCT-TEEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHH
T ss_pred CCeEEeeEEHHHHHHHHHHHHHhcCC-CCeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHH
Confidence 77899999999999 999998865 4588776 578999999999999986421 111 01112234 678999999
Q ss_pred HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 295 KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 295 ~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+.|||+| ++++++|+++++|++.+
T Consensus 333 ~~lG~~p~~~l~e~l~~~~~~~~~~ 357 (377)
T 2q1s_A 333 RELGFSADVSIDDGLRKTIEWTKAN 357 (377)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 8899999 89999999999999764
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=317.70 Aligned_cols=291 Identities=17% Similarity=0.213 Sum_probs=227.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+|||||||||||++|+++|+++|++|++++|+..... ..+ ..+++++.+|++|+++++++++ ++|+|||+
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~ 74 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE----DAI---TEGAKFYNGDLRDKAFLRDVFTQENIEAVMHF 74 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG----GGS---CTTSEEEECCTTCHHHHHHHHHHSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch----hhc---CCCcEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 68999999999999999999999999999998754321 111 1257899999999999999998 89999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... ....++...+++|+.++.+++++|++. ++++||++||. ++|+... ..+++|+++..|. +.|
T Consensus 75 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~-~~~~~~~----~~~~~E~~~~~~~------~~Y 142 (330)
T 2c20_A 75 AADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTA-ATYGEVD----VDLITEETMTNPT------NTY 142 (330)
T ss_dssp CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCG-GGGCSCS----SSSBCTTSCCCCS------SHH
T ss_pred CcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCc-eeeCCCC----CCCCCcCCCCCCC------ChH
Confidence 997532 122345688999999999999999987 88999999998 6666543 5688999887665 679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-------CCccHHHHHHHHcCC-C---C--------CC-CCC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-------LNFGAEVILNLINGD-Q---S--------FA-FPY 225 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~-~---~--------~~-~~~ 225 (322)
+.+|.++|++++.++++++++++++||+++|||..... .......+.+...+. + + -+ +.+
T Consensus 143 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 222 (330)
T 2c20_A 143 GETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIR 222 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeE
Confidence 99999999999999988899999999999999963211 112222233333332 2 1 12 668
Q ss_pred cceeHHHHHHHHHHhhcCCC---CCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHHH-Hhh
Q 020747 226 IFVEIRDVVYAHIRALEVPK---ASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQERA-KSL 297 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~---~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k~-~~l 297 (322)
+|+|++|+|++++.+++++. .+++|+++ ++.+|++|+++.+.+.+|.. .+.... ........+|++|+ +.|
T Consensus 223 ~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~l 301 (330)
T 2c20_A 223 DYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHE-IPAEVAPRRAGDPARLVASSQKAKEKL 301 (330)
T ss_dssp CEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSC-CCEEEECCCSSCCSEECBCCHHHHHHH
T ss_pred eeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCC-CceeeCCCCCCcccccccCHHHHHHHh
Confidence 99999999999999997642 24588876 67899999999999998742 221111 22334678999999 789
Q ss_pred CCcc-c-chhhhHHHHHHHHHHcC
Q 020747 298 GINF-T-PWEVGVRGCIESLMEKG 319 (322)
Q Consensus 298 g~~~-~-~~~~~l~~~~~~~~~~~ 319 (322)
||+| + +++++|+++++|++++.
T Consensus 302 G~~p~~~~l~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 302 GWDPRYVNVKTIIEHAWNWHQKQP 325 (330)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCccCCHHHHHHHHHHHHHHhh
Confidence 9999 6 99999999999998753
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=320.27 Aligned_cols=293 Identities=18% Similarity=0.149 Sum_probs=230.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|+|||||||||||++|+++|+++|++|++++|+...... .. ..+++++.+|++|+++++++++++|+|||+
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~-----~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~ 100 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--ED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFNL 100 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--GG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh--hc-----cCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence 45899999999999999999999999999999998654321 10 235789999999999999999999999999
Q ss_pred ccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCC-CCCccccCCC--CCCccccccc
Q 020747 87 ASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPM-TPDVVIDETW--FSNPVLCKEN 161 (322)
Q Consensus 87 A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~-~~~~~~~E~~--~~~~~~~~~~ 161 (322)
|+.... ....++...+++|+.++.+++++|++. ++++|||+||. ++|+..... ....+++|++ +..+.
T Consensus 101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~-~v~~~~~~~~~~~~~~~E~~~~~~~~~----- 173 (379)
T 2c5a_A 101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSA-CIYPEFKQLETTNVSLKESDAWPAEPQ----- 173 (379)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEG-GGSCGGGSSSSSSCEECGGGGSSBCCS-----
T ss_pred ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeeh-heeCCCCCCCccCCCcCcccCCCCCCC-----
Confidence 997542 114556789999999999999999987 88999999998 555543210 0124577765 33332
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC---ccHHHHHHHHcCCC---CCC---CCCcceeHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN---FGAEVILNLINGDQ---SFA---FPYIFVEIRD 232 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~---~~~~~~~~~~~g~~---~~~---~~~~~i~~~D 232 (322)
+.|+.+|.++|.+++.++++++++++++||+.+|||....... ....++..+..+.+ +++ +.++|+|++|
T Consensus 174 -~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D 252 (379)
T 2c5a_A 174 -DAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 252 (379)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHH
Confidence 6799999999999999998889999999999999997654221 23455566656653 222 6789999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC----CCCCCCccCCCCccccchHHH-HhhCCcc-cchh
Q 020747 233 VVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL----LRSGKLEEKYQPTIKVSQERA-KSLGINF-TPWE 305 (322)
Q Consensus 233 ~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~ 305 (322)
+|++++.+++++ .++.|+++ ++.+|++|+++.+.+.++.. .+|.+ .......+|++|+ +.|||+| ++++
T Consensus 253 va~ai~~~l~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---~~~~~~~~d~~k~~~~lG~~p~~~l~ 328 (379)
T 2c5a_A 253 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP---EGVRGRNSDNNLIKEKLGWAPNMRLK 328 (379)
T ss_dssp HHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC---CCCSBCEECCHHHHHHHSCCCCCCHH
T ss_pred HHHHHHHHhhcc-CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC---CCcccccCCHHHHHHHhCCCCCCCHH
Confidence 999999999876 45688776 57899999999999998742 12221 1234567899999 7899999 7999
Q ss_pred hhHHHHHHHHHHc
Q 020747 306 VGVRGCIESLMEK 318 (322)
Q Consensus 306 ~~l~~~~~~~~~~ 318 (322)
++|+++++|++++
T Consensus 329 e~l~~~~~~~~~~ 341 (379)
T 2c5a_A 329 EGLRITYFWIKEQ 341 (379)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=314.01 Aligned_cols=269 Identities=14% Similarity=0.084 Sum_probs=217.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-CCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG-CDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~d~vih 85 (322)
++|+||||| +||||++|+++|+++|++|++++|+.+.. ..+++++.+|++|++++++++++ +|+|||
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih 69 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-----------PAGVQTLIADVTRPDTLASIVHLRPEILVY 69 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-----------CTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-----------ccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence 347899999 59999999999999999999999986542 24678999999999999999987 999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+||... .++...+++|+.++.+++++|++. ++++|||+||. ++|+... ..+++|+++..|. +.|
T Consensus 70 ~a~~~~----~~~~~~~~~n~~~~~~ll~a~~~~-~~~~~v~~SS~-~vyg~~~----~~~~~E~~~~~p~------~~Y 133 (286)
T 3gpi_A 70 CVAASE----YSDEHYRLSYVEGLRNTLSALEGA-PLQHVFFVSST-GVYGQEV----EEWLDEDTPPIAK------DFS 133 (286)
T ss_dssp CHHHHH----HC-----CCSHHHHHHHHHHTTTS-CCCEEEEEEEG-GGCCCCC----SSEECTTSCCCCC------SHH
T ss_pred eCCCCC----CCHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEEccc-EEEcCCC----CCCCCCCCCCCCC------Chh
Confidence 998743 233577889999999999999987 88999999999 6776654 6789999988776 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CC-CC-CCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QS-FA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~-~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
+.+|.++|++ ..+ ++++++||+.+|||... .++..+.. . .. .+ +.++|+|++|+|++++.+++
T Consensus 134 ~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~-------~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 199 (286)
T 3gpi_A 134 GKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRL-------RMIRQAQT-PEQWPARNAWTNRIHRDDGAAFIAYLIQ 199 (286)
T ss_dssp HHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBC-------HHHHHTTC-GGGSCSSBCEECEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-Hhc-----CCeEEEecccccCCCch-------hHHHHHHh-cccCCCcCceeEEEEHHHHHHHHHHHHh
Confidence 9999999998 543 89999999999999754 23444444 3 11 12 78899999999999999998
Q ss_pred C---CCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCccccchHHHHhhCCcc-c-chhhhHHHHHHHHH
Q 020747 243 V---PKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF-T-PWEVGVRGCIESLM 316 (322)
Q Consensus 243 ~---~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~-~-~~~~~l~~~~~~~~ 316 (322)
+ ...+++|+++ ++.+|++|+++.+++.+|... +............+|++|++.|||+| + +++++|+++++|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~l~e~l~~~~~~~~ 278 (286)
T 3gpi_A 200 QRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAY-PAGATPPVQGNKKLSNARLLASGYQLIYPDYVSGYGALLAAMR 278 (286)
T ss_dssp HHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCC-CCSCCCCBCSSCEECCHHHHHTTCCCSSCSHHHHHHHHHHHHT
T ss_pred hhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCC-CCCCCcccCCCeEeeHHHHHHcCCCCcCCcHHHHHHHHHHHHh
Confidence 7 4556688877 578999999999999997432 21111244567789999999999999 6 69999999999987
Q ss_pred Hc
Q 020747 317 EK 318 (322)
Q Consensus 317 ~~ 318 (322)
.+
T Consensus 279 ~~ 280 (286)
T 3gpi_A 279 EG 280 (286)
T ss_dssp C-
T ss_pred cc
Confidence 53
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=316.96 Aligned_cols=287 Identities=19% Similarity=0.176 Sum_probs=223.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc--ChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP--KTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+++|+|||||||||||++|+++|+++|++|++++|+.... ....+.... ...+++++.+|++ ++|+|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~----------~~d~v 73 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFL-EKPVLELEERDLS----------DVRLV 73 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEE-CSCGGGCCHHHHT----------TEEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhc-cCCCeeEEeCccc----------cCCEE
Confidence 4568999999999999999999999999999999987521 011111111 1133455556654 78999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+|+.... .....+...++ |+.++.+++++|++. ++++|||+||. .+|+... ..+++|+++..|.
T Consensus 74 i~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~-~v~~~~~----~~~~~E~~~~~p~------ 140 (321)
T 3vps_A 74 YHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTC-EVYGQAD----TLPTPEDSPLSPR------ 140 (321)
T ss_dssp EECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEG-GGGCSCS----SSSBCTTSCCCCC------
T ss_pred EECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCH-HHhCCCC----CCCCCCCCCCCCC------
Confidence 999997643 22234456777 999999999999998 78999999999 6666653 6789999888776
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCc-cEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGI-DLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYA 236 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~-~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~ 236 (322)
+.|+.+|.++|++++.+++++++ +++++||+.+|||..... .....++..+..+. .+++ +.++|+|++|+|++
T Consensus 141 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~ 219 (321)
T 3vps_A 141 SPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPD-ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDK 219 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTT-SHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCC-ChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHH
Confidence 77999999999999999998999 999999999999987652 33445566666665 2332 77899999999999
Q ss_pred HHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-CC-CCCccCCCCccccchHHH-HhhCCcc--cchhhhHHH
Q 020747 237 HIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-RS-GKLEEKYQPTIKVSQERA-KSLGINF--TPWEVGVRG 310 (322)
Q Consensus 237 ~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~-~~~~~~~~~~~~~~~~k~-~~lg~~~--~~~~~~l~~ 310 (322)
++.+++++..+ .|+++ ++.+|+.|+++.+. .++... +. ............+|++|+ +.|||+| ++++++|++
T Consensus 220 ~~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~ 297 (321)
T 3vps_A 220 LVALANRPLPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRL 297 (321)
T ss_dssp HHHGGGSCCCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHH
T ss_pred HHHHHhcCCCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHHHHH
Confidence 99999987664 88777 67899999999999 887431 11 011133456788999999 7799999 999999999
Q ss_pred HHHHHHHcC
Q 020747 311 CIESLMEKG 319 (322)
Q Consensus 311 ~~~~~~~~~ 319 (322)
+++|++.++
T Consensus 298 ~~~~~~~~~ 306 (321)
T 3vps_A 298 TLEWWQSRD 306 (321)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHhCC
Confidence 999999765
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=318.51 Aligned_cols=309 Identities=31% Similarity=0.423 Sum_probs=230.7
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc-c-CCCCcEEEE-EccCCCccchHHhhCC
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-D-GATERLHLF-KANLLEEGSFDSAVDG 79 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~-~~Dl~~~~~~~~~~~~ 79 (322)
...+++|+|||||||||||++|+++|+++|++|++++|+.+.. ..+... . ....+++++ .+|++|++++++++++
T Consensus 6 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 83 (342)
T 1y1p_A 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKL--ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTT
T ss_pred ccCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccH--HHHHHHhhccCCCceEEEEecCCcChHHHHHHHcC
Confidence 3346678999999999999999999999999999999975332 111111 0 002468888 8999999999999999
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc---
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV--- 156 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~--- 156 (322)
+|+|||+||..... .++...+++|+.++.+++++|.+..++++||++||..+++.... .....+++|+++....
T Consensus 84 ~d~vih~A~~~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~-~~~~~~~~E~~~~~~~~~~ 160 (342)
T 1y1p_A 84 AAGVAHIASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKP-NVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp CSEEEECCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCT-TCCCCEECTTCCCHHHHHH
T ss_pred CCEEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCC-CCCCcccCccccCchhhhh
Confidence 99999999976432 35678999999999999999985437899999999955433221 0112678888742110
Q ss_pred -------cccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCCCC--CC-
Q 020747 157 -------LCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGDQS--FA- 222 (322)
Q Consensus 157 -------~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~--~~- 222 (322)
.+..+.+.|+.||.++|.+++.+++++ +++++++||+++|||...+... ....++..+..|.+. ++
T Consensus 161 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1y1p_A 161 AKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240 (342)
T ss_dssp HHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcccccc
Confidence 011223679999999999999998876 7899999999999998654321 345566667776632 22
Q ss_pred -CCCcceeHHHHHHHHHHhhcCCCCCc-cEEEecCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCccccchHHH-HhhCC
Q 020747 223 -FPYIFVEIRDVVYAHIRALEVPKASG-RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERA-KSLGI 299 (322)
Q Consensus 223 -~~~~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~lg~ 299 (322)
+.++|+|++|+|++++.+++++...| .++++++.+|+.|+++.+.+.+|...++............+|++|+ +.|||
T Consensus 241 ~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~ 320 (342)
T 1y1p_A 241 MPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKS 320 (342)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHHHHHHH
T ss_pred CCcCCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCccccccccCChHHHHHHHhh
Confidence 67899999999999999998765555 5666778899999999999999854333322222223467899999 77877
Q ss_pred ---cc-cchhhhHHHHHHHHH
Q 020747 300 ---NF-TPWEVGVRGCIESLM 316 (322)
Q Consensus 300 ---~~-~~~~~~l~~~~~~~~ 316 (322)
.+ ++++++|+++++|++
T Consensus 321 ~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 321 LGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp TTCCSCCCHHHHHHHHHCCSC
T ss_pred cccCCcCCHHHHHHHHHHHhh
Confidence 45 899999999998864
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=317.62 Aligned_cols=286 Identities=18% Similarity=0.091 Sum_probs=222.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 82 (322)
+|++|+|||||||||||++|+++|+++|+ +.... ...++.+.+|++|++++++++++ +|+
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~------------~~~~~~~~~D~~d~~~~~~~~~~~~~d~ 64 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED------------WVFVSSKDADLTDTAQTRALFEKVQPTH 64 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE------------EEECCTTTCCTTSHHHHHHHHHHSCCSE
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc------------ccccCceecccCCHHHHHHHHhhcCCCE
Confidence 45678999999999999999999999998 11100 11234457999999999999986 999
Q ss_pred EEEcccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC----CCCcc
Q 020747 83 VFHTASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW----FSNPV 156 (322)
Q Consensus 83 vih~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~----~~~~~ 156 (322)
|||+|+.... ....++...+++|+.++.+++++|++. ++++|||+||. ++|+... ..+++|++ ++.|.
T Consensus 65 Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~-~vyg~~~----~~~~~E~~~~~~~~~p~ 138 (319)
T 4b8w_A 65 VIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLST-CIFPDKT----TYPIDETMIHNGPPHNS 138 (319)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCG-GGSCSSC----CSSBCGGGGGBSCCCSS
T ss_pred EEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcch-hhcCCCC----CCCccccccccCCCCCC
Confidence 9999998542 234455788999999999999999998 89999999999 6776654 66888886 33332
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHH----HHcCC--CCCC---CC
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILN----LINGD--QSFA---FP 224 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~----~~~g~--~~~~---~~ 224 (322)
..+|+.+|.++|++++.++++++++++++||+++|||...... .....++.+ +..|. .+++ +.
T Consensus 139 -----~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 213 (319)
T 4b8w_A 139 -----NFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPR 213 (319)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCE
T ss_pred -----cchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCee
Confidence 1259999999999999999989999999999999999875421 223444554 45565 2333 77
Q ss_pred CcceeHHHHHHHHHHhhcCCC-C-CccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCC-CCccCCCCccccchHHH-HhhC
Q 020747 225 YIFVEIRDVVYAHIRALEVPK-A-SGRYLLA-GSVAQHSDILKFLREHYPTLL-RSG-KLEEKYQPTIKVSQERA-KSLG 298 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~-~-~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~k~-~~lg 298 (322)
++|+|++|+|++++.+++++. . ++.|+++ ++.+|++|+++.+.+.+|... +.. ...........+|++|+ +.||
T Consensus 214 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 293 (319)
T 4b8w_A 214 RQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLP 293 (319)
T ss_dssp ECEEEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCT
T ss_pred EEEEeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcC
Confidence 899999999999999998743 2 3378665 689999999999999997431 111 11123345568999999 7799
Q ss_pred Ccc-cchhhhHHHHHHHHHHcC
Q 020747 299 INF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 299 ~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
|.| ++++++|+++++|++++.
T Consensus 294 ~~p~~~~~~~l~~~~~~~~~~~ 315 (319)
T 4b8w_A 294 DFRFTPFKQAVKETCAWFTDNY 315 (319)
T ss_dssp TCCCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 999 999999999999998753
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-44 Score=319.96 Aligned_cols=299 Identities=15% Similarity=0.146 Sum_probs=225.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih~ 86 (322)
|+|||||||||||++|+++|+++|++|++++|...+........+.. ..+++++.+|++|++++++++++ +|+|||+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc-CCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 68999999999999999999999999999998643322122222221 23588999999999999999987 9999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhccCCCCCC------------CCccccCCCC
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAMLLNETPMT------------PDVVIDETWF 152 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~~~~~~~~------------~~~~~~E~~~ 152 (322)
||.... ....++...+++|+.++.+++++|.+. +++ +||++||. ++|+...... ...+++|+.+
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~-~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~ 158 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTN-KVYGDLEQYKYNETETRYTCVDKPNGYDESTQ 158 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEG-GGGTTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccH-HHhCCCCcCCcccccccccccccccCccccCC
Confidence 997532 112345788999999999999999998 665 99999998 5665432100 0123566665
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC--CccHHHHHHHHcCC-----C--CCC-
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL--NFGAEVILNLINGD-----Q--SFA- 222 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~--~~~~~~~~~~~~g~-----~--~~~- 222 (322)
..+. +.|+.+|.++|++++.++.++|++++++||+.||||...... .....++.++..+. + .++
T Consensus 159 ~~~~------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (347)
T 1orr_A 159 LDFH------SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN 232 (347)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred CCCC------CchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecC
Confidence 5544 779999999999999999888999999999999999764321 12233444444332 1 122
Q ss_pred --CCCcceeHHHHHHHHHHhhcC-CCCCc-cEEEecC---CCCHHHHHHHHHHhCCCCC----CCCCCccCCCCccccch
Q 020747 223 --FPYIFVEIRDVVYAHIRALEV-PKASG-RYLLAGS---VAQHSDILKFLREHYPTLL----RSGKLEEKYQPTIKVSQ 291 (322)
Q Consensus 223 --~~~~~i~~~D~a~~~~~~~~~-~~~~g-~~~~~~~---~~~~~e~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~ 291 (322)
+.++|+|++|+|++++.++++ ....| .|+++++ ++|++|+++.+.+.+|... .|. .........+|+
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--~~~~~~~~~~d~ 310 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV--RESDQRVFVADI 310 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC--CSSCCSEECBCC
T ss_pred CcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCC--CCCCcceeecCH
Confidence 678999999999999999985 22344 8888754 4899999999999987431 121 122334678999
Q ss_pred HHH-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 292 ERA-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 292 ~k~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+|+ +.|||+| ++++++|+++++|++.+
T Consensus 311 ~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 339 (347)
T 1orr_A 311 KKITNAIDWSPKVSAKDGVQKMYDWTSSI 339 (347)
T ss_dssp HHHHHHHCCCCCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCccCCHHHHHHHHHHHHHHH
Confidence 999 8899999 89999999999999875
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=310.53 Aligned_cols=296 Identities=19% Similarity=0.235 Sum_probs=224.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.+++|+|||||||||||++|+++|+++|++|++++|...... ..+.... ...+++++.+|++++. +.++|+||
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~D~~~~~-----~~~~d~vi 96 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK-RNVEHWI-GHENFELINHDVVEPL-----YIEVDQIY 96 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-GGTGGGT-TCTTEEEEECCTTSCC-----CCCCSEEE
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccch-hhhhhhc-cCCceEEEeCccCChh-----hcCCCEEE
Confidence 356789999999999999999999999999999999754321 1121111 1346899999998863 56899999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+||.... ....++...+++|+.++.+++++|++. ++ +||++||. ++|+... ..+++|+.+..... ..+.+
T Consensus 97 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~-~v~g~~~----~~~~~E~~~~~~~~-~~~~~ 168 (343)
T 2b69_A 97 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTS-EVYGDPE----VHPQSEDYWGHVNP-IGPRA 168 (343)
T ss_dssp ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEG-GGGBSCS----SSSBCTTCCCBCCS-SSTTH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcH-HHhCCCC----CCCCcccccccCCC-CCCCC
Confidence 99997543 123455788999999999999999997 65 99999998 6666543 45777774321110 11226
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-CCccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-LNFGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAH 237 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~ 237 (322)
.|+.+|.++|++++.++++++++++++||+.+|||..... ......++..+..+.+ +++ +.++|+|++|+|+++
T Consensus 169 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 169 CYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHH
Confidence 7999999999999999988899999999999999986542 1233455666666662 233 678999999999999
Q ss_pred HHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC----CCCCCccCCCCccccchHHH-HhhCCcc-cchhhhHHH
Q 020747 238 IRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL----RSGKLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRG 310 (322)
Q Consensus 238 ~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~ 310 (322)
+.+++.+. ++.|+++ ++.+|++|+++.+.+.+|... +|.. ........+|++|+ +.|||+| ++++++|++
T Consensus 249 ~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~--~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~ 325 (343)
T 2b69_A 249 VALMNSNV-SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA--QDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNK 325 (343)
T ss_dssp HHHHTSSC-CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC--TTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHH
T ss_pred HHHHhcCC-CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC--CCCCceecCCHHHHHHHcCCCCCCCHHHHHHH
Confidence 99998753 5688776 578999999999999987431 1211 12234567899999 7899999 899999999
Q ss_pred HHHHHHHc
Q 020747 311 CIESLMEK 318 (322)
Q Consensus 311 ~~~~~~~~ 318 (322)
+++|++.+
T Consensus 326 ~~~~~~~~ 333 (343)
T 2b69_A 326 AIHYFRKE 333 (343)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=316.57 Aligned_cols=297 Identities=18% Similarity=0.157 Sum_probs=225.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-----ChhhhhhccC-CCCcEEEEEccCCCccchHHhhC--CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-----KTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD--GC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~--~~ 80 (322)
|+|||||||||||++|+++|+++|++|++++|..... ..+.+..+.. ...+++++.+|++|+++++++++ ++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 7999999999999999999999999999999865430 1111211110 12467899999999999999998 89
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+||.... .....+...+++|+.++.+++++|++. ++++||++||. ++|+... ..+++|+++..|.
T Consensus 83 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~-~~~g~~~----~~~~~E~~~~~p~--- 153 (348)
T 1ek6_A 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSA-TVYGNPQ----YLPLDEAHPTGGC--- 153 (348)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGGCSCS----SSSBCTTSCCCCC---
T ss_pred CEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcH-HHhCCCC----CCCcCCCCCCCCC---
Confidence 999999997532 112345688999999999999999987 88999999998 6666543 6688999876651
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCCccCCCCC------CC--CCccHHHHHHHHc--CCC--C-----
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQ------PI--LNFGAEVILNLIN--GDQ--S----- 220 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~rp~~v~G~~~~------~~--~~~~~~~~~~~~~--g~~--~----- 220 (322)
.+.|+.+|.++|.+++.++++ + ++++++||+++|||... .. .......+..... +.+ +
T Consensus 154 --~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 230 (348)
T 1ek6_A 154 --TNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDY 230 (348)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCS
T ss_pred --CCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcc
Confidence 167999999999999999887 5 99999999999999531 10 0112222333333 221 1
Q ss_pred ---CC-CCCcceeHHHHHHHHHHhhcCC--CCC-ccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC---ccCCCCcccc
Q 020747 221 ---FA-FPYIFVEIRDVVYAHIRALEVP--KAS-GRYLLA-GSVAQHSDILKFLREHYPTLLRSGKL---EEKYQPTIKV 289 (322)
Q Consensus 221 ---~~-~~~~~i~~~D~a~~~~~~~~~~--~~~-g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~ 289 (322)
-+ +.++|+|++|+|++++.+++++ ..+ ++|+++ ++.+|++|+++.+.+.++.. ++... .........+
T Consensus 231 ~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~ 309 (348)
T 1ek6_A 231 DTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKK-IPYKVVARREGDVAACYA 309 (348)
T ss_dssp SSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSC-CCEEEECCCTTCCSEECB
T ss_pred cCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCC-CceeeCCCCCccchhhcc
Confidence 12 6689999999999999999764 334 488776 67899999999999998742 22111 1223346789
Q ss_pred chHHH-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 290 SQERA-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 290 ~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
|++|+ +.|||+| ++++++|+++++|++.+
T Consensus 310 d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~ 340 (348)
T 1ek6_A 310 NPSLAQEELGWTAALGLDRMCEDLWRWQKQN 340 (348)
T ss_dssp CCHHHHHTTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999 8899999 89999999999999875
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=318.40 Aligned_cols=301 Identities=18% Similarity=0.240 Sum_probs=228.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
|+|||||||||||++|+++|+++ |++|++++|+......+.+..+.. ..+++++.+|++|+++++++++ ++|+|||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhc-CCCeEEEECCCCCHHHHHHHHhhcCCCEEEE
Confidence 36999999999999999999998 799999999753222222322221 3578999999999999999998 8999999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcC-Ccc-------EEEEecchhhhccCCCC------CCCCccccCC
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIK-------RVVLTSSIGAMLLNETP------MTPDVVIDET 150 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~-------~~i~~SS~~~~~~~~~~------~~~~~~~~E~ 150 (322)
+||.... ....++...+++|+.++.+++++|.+.+ +++ +||++||. ++|+.... .....+++|+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~-~v~g~~~~~~~~~~~~~~~~~~E~ 158 (361)
T 1kew_A 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTD-EVYGDLPHPDEVENSVTLPLFTET 158 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEG-GGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCH-HHhCCCcccccccccccCCCCCCC
Confidence 9997542 1223457899999999999999998852 455 99999998 56654320 0001178888
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~ 225 (322)
++..+. +.|+.+|.++|.+++.++.+++++++++||+.||||...+. .....++..+..+. ++++ +.+
T Consensus 159 ~~~~~~------~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (361)
T 1kew_A 159 TAYAPS------SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIR 231 (361)
T ss_dssp SCCCCC------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHHTCCEEEETTSCCEE
T ss_pred CCCCCC------CccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcc-cHHHHHHHHHHcCCCceEcCCCceeE
Confidence 776654 67999999999999999988899999999999999986432 23344556666665 2223 678
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhCCCC-C--CCCC-----Cc--cCCCCccccchHHH
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRYLLAG-SVAQHSDILKFLREHYPTL-L--RSGK-----LE--EKYQPTIKVSQERA 294 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~e~~~~i~~~~~~~-~--~~~~-----~~--~~~~~~~~~~~~k~ 294 (322)
+|+|++|+|++++.+++++..++.|++++ ..+|++|+++.+.+.++.. + .|.. .. ......+.+|++|+
T Consensus 232 ~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (361)
T 1kew_A 232 DWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKI 311 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHH
T ss_pred eeEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeecCHHHH
Confidence 99999999999999998765455888775 6799999999999887521 1 0110 00 11224567899999
Q ss_pred -HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 295 -KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 295 -~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+.|||+| ++++++|+++++|++.+
T Consensus 312 ~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 312 SRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 7799999 89999999999999764
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=316.50 Aligned_cols=296 Identities=17% Similarity=0.148 Sum_probs=229.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-----CCCcEEEEEccCCCccchHHhhCC--CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATERLHLFKANLLEEGSFDSAVDG--CD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~--~d 81 (322)
|+|||||||||||++|+++|+++|++|++++|+.+......+..+.. ...+++++.+|++|++++.+++++ +|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999865422122222211 134688999999999999998885 69
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI---KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
+|||+||.... ....++...+++|+.++.+++++|.+. ++ ++||++||. ++|+... ..+++|+++..|.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~-~~~~~~~----~~~~~E~~~~~~~- 177 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTS-ELYGKVQ----EIPQKETTPFYPR- 177 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEG-GGTCSCS----SSSBCTTSCCCCC-
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecch-hhhCCCC----CCCCCccCCCCCC-
Confidence 99999997532 112345678999999999999999987 66 799999999 5565543 5678999877665
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CC--CC---CCCccee
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QS--FA---FPYIFVE 229 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~--~~---~~~~~i~ 229 (322)
+.|+.+|.++|.+++.++.+++++++++||+++|||....... ....++.++..|. .. ++ +.++|+|
T Consensus 178 -----~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~ 252 (375)
T 1t2a_A 178 -----SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH 252 (375)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred -----ChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEE
Confidence 6799999999999999998889999999999999997543221 1223444555565 32 22 6789999
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC------CCCCC-----------------ccCCCC
Q 020747 230 IRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL------RSGKL-----------------EEKYQP 285 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~~-----------------~~~~~~ 285 (322)
++|+|++++.+++++. .+.|+++ ++.+|++|+++.+.+.+|... +|.+. ......
T Consensus 253 v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (375)
T 1t2a_A 253 AKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVD 331 (375)
T ss_dssp HHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCC
T ss_pred HHHHHHHHHHHHhcCC-CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccch
Confidence 9999999999998765 4788766 678999999999999987531 12110 012234
Q ss_pred ccccchHHH-HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 286 TIKVSQERA-KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 286 ~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
...+|++|+ +.|||+| ++++++|+++++|+++
T Consensus 332 ~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~ 365 (375)
T 1t2a_A 332 FLQGDCTKAKQKLNWKPRVAFDELVREMVHADVE 365 (375)
T ss_dssp BCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHH
Confidence 567899999 7899999 8999999999999975
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=314.04 Aligned_cols=298 Identities=17% Similarity=0.226 Sum_probs=227.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~vih~ 86 (322)
|+|||||||||||++++++|+++ |++|++++|+..... .+. ...+++++.+|++|+ +.++++++++|+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~-----~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~ 74 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----RFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG-----GGT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH-----Hhh-cCCCeEEEeccccCcHHHHHhhccCCCEEEEc
Confidence 47999999999999999999998 899999999764321 111 134689999999985 4588888999999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc-cccchh
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC-KENKEW 164 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~~~~~ 164 (322)
||.... ....++...+++|+.++.+++++|++. + ++|||+||. ++|+... ..+++|+++..+..+ ..+.+.
T Consensus 75 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~-~v~g~~~----~~~~~e~~~~~~~~~~~~~~~~ 147 (345)
T 2bll_A 75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTS-EVYGMCS----DKYFDEDHSNLIVGPVNKPRWI 147 (345)
T ss_dssp BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCG-GGGBTCC----CSSBCTTTCCCBCCCTTCGGGH
T ss_pred ccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecH-HHcCCCC----CCCcCCcccccccCcccCcccc
Confidence 997532 112345678999999999999999987 6 899999998 6666543 556788876422111 122367
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-------CCccHHHHHHHHcCCC--CCC---CCCcceeHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-------LNFGAEVILNLINGDQ--SFA---FPYIFVEIRD 232 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D 232 (322)
|+.+|.++|++++.++++++++++++||+.+|||..... ......++..+..|.+ +++ +.++|+|++|
T Consensus 148 Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D 227 (345)
T 2bll_A 148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHH
Confidence 999999999999999988899999999999999986431 1123445566666662 232 6789999999
Q ss_pred HHHHHHHhhcCCC---CCccEEEec-C-CCCHHHHHHHHHHhCCCC----CCCCCCc-------------cCCCCccccc
Q 020747 233 VVYAHIRALEVPK---ASGRYLLAG-S-VAQHSDILKFLREHYPTL----LRSGKLE-------------EKYQPTIKVS 290 (322)
Q Consensus 233 ~a~~~~~~~~~~~---~~g~~~~~~-~-~~~~~e~~~~i~~~~~~~----~~~~~~~-------------~~~~~~~~~~ 290 (322)
+|++++.+++++. .++.|++++ + .+|++|+++.+.+.++.. .+|.+.. ........+|
T Consensus 228 va~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 307 (345)
T 2bll_A 228 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPS 307 (345)
T ss_dssp HHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBC
T ss_pred HHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhccc
Confidence 9999999998753 344888875 3 799999999999987532 2222211 0123456789
Q ss_pred hHHH-HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 291 QERA-KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 291 ~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
++|+ +.|||+| ++++++|+++++|++++.
T Consensus 308 ~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~ 338 (345)
T 2bll_A 308 IRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338 (345)
T ss_dssp CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHHcC
Confidence 9999 7899999 899999999999998653
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=311.92 Aligned_cols=298 Identities=17% Similarity=0.153 Sum_probs=231.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vi 84 (322)
++|+|||||||||||++++++|+++|++|++++|+........+..+. ...+++++.+|++|++++++++++ +|+||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELG-IENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhcc-ccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 458999999999999999999999999999999987653222222221 124689999999999999998885 69999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc-cEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI-KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
|+||.... ....++...+++|+.++.+++++|.+. ++ ++||++||. ++|+... ..+++|+.+..+.
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~-~vyg~~~----~~~~~e~~~~~~~------ 148 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTS-EMFGKVQ----EIPQTEKTPFYPR------ 148 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEG-GGGCSCS----SSSBCTTSCCCCC------
T ss_pred ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEech-hhcCCCC----CCCCCccCCCCCC------
Confidence 99997533 224556789999999999999999987 76 899999999 6666554 5678888876665
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CC--CC---CCCcceeHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QS--FA---FPYIFVEIRDVV 234 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~--~~---~~~~~i~~~D~a 234 (322)
+.|+.+|.++|.+++.++.+++++++++|++++|||+...... .....+.++..|. .. ++ +.++|+|++|+|
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva 228 (345)
T 2z1m_A 149 SPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYV 228 (345)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHH
Confidence 6799999999999999999889999999999999998543211 1122334445554 22 22 567899999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC------CCCCC-----------------ccCCCCccccc
Q 020747 235 YAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL------RSGKL-----------------EEKYQPTIKVS 290 (322)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~~-----------------~~~~~~~~~~~ 290 (322)
++++.+++++. .+.|+++ ++.++++|+++.+.+.+|... +|.+. .........+|
T Consensus 229 ~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 307 (345)
T 2z1m_A 229 EAMWLMMQQPE-PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGN 307 (345)
T ss_dssp HHHHHHHTSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBC
T ss_pred HHHHHHHhCCC-CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecC
Confidence 99999998764 4688765 678999999999999987531 12110 01223456689
Q ss_pred hHHH-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 291 QERA-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 291 ~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
++|+ +.|||+| ++++++|+++++|++++
T Consensus 308 ~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 337 (345)
T 2z1m_A 308 PEKAMKKLGWKPRTTFDELVEIMMEADLKR 337 (345)
T ss_dssp CHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999 7899999 99999999999999763
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=321.97 Aligned_cols=299 Identities=14% Similarity=0.111 Sum_probs=223.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC---------------hhhhhhcc-CCCCcEEEEEccCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK---------------TEHLRELD-GATERLHLFKANLLE 69 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------------~~~~~~~~-~~~~~~~~~~~Dl~~ 69 (322)
.++++|||||||||||++|+++|+++|++|++++|...... .+.+.... ....+++++.+|++|
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 35689999999999999999999999999999988532210 00111000 012468899999999
Q ss_pred ccchHHhhCC--CCEEEEcccCcccC-CCCCc---chhhhHHHHHHHHHHHHHhhcCCc-cEEEEecchhhhccCCCCCC
Q 020747 70 EGSFDSAVDG--CDGVFHTASPVIFL-SDNPQ---ADIVDPAVMGTLNVLRSCAKVHSI-KRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 70 ~~~~~~~~~~--~d~vih~A~~~~~~-~~~~~---~~~~~~N~~~~~~l~~~~~~~~~~-~~~i~~SS~~~~~~~~~~~~ 142 (322)
++++++++++ +|+|||+||..... ...++ ...+++|+.|+.+++++|++. ++ ++||++||. ++|+..
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~~~V~~SS~-~vyg~~---- 162 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF-GEECHLVKLGTM-GEYGTP---- 162 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEECCG-GGGCCC----
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-CCCcEEEEeCcH-HHhCCC----
Confidence 9999999987 99999999975321 11122 247899999999999999987 66 599999998 666544
Q ss_pred CCccccCCC--------------CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-----
Q 020747 143 PDVVIDETW--------------FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI----- 203 (322)
Q Consensus 143 ~~~~~~E~~--------------~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~----- 203 (322)
..+++|+. +..| .+.|+.||.++|.+++.++.++|++++++||+.||||+..+.
T Consensus 163 -~~~~~E~~~~~~~~~~~~~~~~~~~~------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~ 235 (404)
T 1i24_A 163 -NIDIEEGYITITHNGRTDTLPYPKQA------SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEE 235 (404)
T ss_dssp -SSCBCSSEEEEEETTEEEEEECCCCC------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGG
T ss_pred -CCCCCccccccccccccccccCCCCC------CChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccc
Confidence 23456642 2222 267999999999999999988899999999999999986421
Q ss_pred -----------CCccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHHHHhhcCCCCCc---cEEEecCCCCHHHHHH
Q 020747 204 -----------LNFGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAHIRALEVPKASG---RYLLAGSVAQHSDILK 264 (322)
Q Consensus 204 -----------~~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~~~~~~~~~~~g---~~~~~~~~~~~~e~~~ 264 (322)
......++..+..|.+ +++ +.++|+|++|+|++++.+++++...| +||++++.+|++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~ 315 (404)
T 1i24_A 236 LRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELAS 315 (404)
T ss_dssp GCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHH
Confidence 1234556666777763 333 67999999999999999998765433 8888778899999999
Q ss_pred HHHHh---CCCC-C---CCCCCccCCCCccccchHHHHhhCCcc-cchhhhHHHHHHHHHH
Q 020747 265 FLREH---YPTL-L---RSGKLEEKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 265 ~i~~~---~~~~-~---~~~~~~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
.+.+. ++.. + .|............+|++|+++|||+| ++++++++++++|++.
T Consensus 316 ~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~LG~~p~~~~~~~l~~~~~~~~~ 376 (404)
T 1i24_A 316 LVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQ 376 (404)
T ss_dssp HHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCccccccCcccCccccceEecCHHHHHHcCCCcCcCHHHHHHHHHHHHHh
Confidence 99997 5432 1 222211112345678999997799999 8999999999999874
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=314.82 Aligned_cols=296 Identities=19% Similarity=0.180 Sum_probs=225.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC----CCCcEEEEEccCCCccchHHhhCC--CCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG----ATERLHLFKANLLEEGSFDSAVDG--CDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 82 (322)
|+|||||||||||++++++|+++|++|++++|+.+......+..+.. ...+++++.+|++|++++++++++ +|+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCCE
Confidence 78999999999999999999999999999999765421111222111 124688999999999999998885 799
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCcccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI---KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC 158 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (322)
|||+||.... ....++...+++|+.++.+++++|.+. ++ ++||++||. ++|+... ..+++|+++..|.
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~-~v~g~~~----~~~~~E~~~~~~~-- 153 (372)
T 1db3_A 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTS-ELYGLVQ----EIPQKETTPFYPR-- 153 (372)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEG-GGGTTCC----SSSBCTTSCCCCC--
T ss_pred EEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCCh-hhhCCCC----CCCCCccCCCCCC--
Confidence 9999997543 233455678899999999999999987 66 799999998 6665543 5678898877665
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CC--CC---CCCcceeH
Q 020747 159 KENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QS--FA---FPYIFVEI 230 (322)
Q Consensus 159 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~--~~---~~~~~i~~ 230 (322)
+.|+.+|.++|.+++.++.+++++++++|++++|||....... ....++..+..|. +. ++ +.++|+|+
T Consensus 154 ----~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v 229 (372)
T 1db3_A 154 ----SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHA 229 (372)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEH
T ss_pred ----ChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEH
Confidence 6799999999999999999899999999999999997643221 1233444555665 22 22 77899999
Q ss_pred HHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC------CCCC-------------------------
Q 020747 231 RDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL------RSGK------------------------- 278 (322)
Q Consensus 231 ~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~------~~~~------------------------- 278 (322)
+|+|++++.+++++. ++.|+++ ++.+|++|+++.+.+.++... +|.+
T Consensus 230 ~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1db3_A 230 KDYVKMQWMMLQQEQ-PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDP 308 (372)
T ss_dssp HHHHHHHHHTTSSSS-CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECG
T ss_pred HHHHHHHHHHHhcCC-CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccc
Confidence 999999999998764 4688766 678999999999999987421 1110
Q ss_pred --CccCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 279 --LEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 279 --~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
..........+|++|+ +.|||+| ++++|+|+++++|++.
T Consensus 309 ~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~ 351 (372)
T 1db3_A 309 RYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLE 351 (372)
T ss_dssp GGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred cccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHH
Confidence 0011233566899999 7899999 9999999999999975
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=310.80 Aligned_cols=286 Identities=18% Similarity=0.261 Sum_probs=224.2
Q ss_pred EEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
+|||||||||||++|+++|+++ |++|++++|+..... ++.++.+|++|+++++++++ ++|+|||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~------------~~~~~~~D~~d~~~~~~~~~~~~~d~vih 68 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG------------GIKFITLDVSNRDEIDRAVEKYSIDAIFH 68 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT------------TCCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc------------CceEEEecCCCHHHHHHHHhhcCCcEEEE
Confidence 5899999999999999999998 899999998754321 35678999999999999988 8999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+|+........++...+++|+.++.+++++|++. ++++||++||. ++|+.... ..+.+|+++..|. +.|
T Consensus 69 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~-~~~~~~~~---~~~~~e~~~~~p~------~~Y 137 (317)
T 3ajr_A 69 LAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTI-GVFGPETP---KNKVPSITITRPR------TMF 137 (317)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGCCTTSC---SSSBCSSSCCCCC------SHH
T ss_pred CCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCH-HHhCCCCC---CCCccccccCCCC------chH
Confidence 9997543222345788999999999999999997 88999999999 55554321 4567787776665 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCC--CCC--C-CCCcceeHHHHHHHH
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGD--QSF--A-FPYIFVEIRDVVYAH 237 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~--~~~--~-~~~~~i~~~D~a~~~ 237 (322)
+.+|.++|.+++.++++++++++++||+.+||+...+.. ......+.+.+.+. ..+ + +.++|+|++|+|+++
T Consensus 138 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 217 (317)
T 3ajr_A 138 GVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHH
Confidence 999999999999998888999999999999998654321 11222333444433 222 2 789999999999999
Q ss_pred HHhhcCCCC----CccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCc----cCCCCccccchHHH-HhhCCcc-cchhhh
Q 020747 238 IRALEVPKA----SGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLE----EKYQPTIKVSQERA-KSLGINF-TPWEVG 307 (322)
Q Consensus 238 ~~~~~~~~~----~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~k~-~~lg~~~-~~~~~~ 307 (322)
+.+++++.. ++.|+++++.+|++|+++.+.+.+|...++.... ........+|++|+ +.|||+| ++++++
T Consensus 218 ~~~l~~~~~~~~~g~~~~i~~~~~s~~e~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~ 297 (317)
T 3ajr_A 218 VDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRT 297 (317)
T ss_dssp HHHHHCCGGGCSSCSCEECCSEEECHHHHHHHHHTTCCSCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHH
T ss_pred HHHHhCCccccccCceEecCCccccHHHHHHHHHHHCCccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHH
Confidence 999987642 3589888888999999999999987433322110 01123457899999 7899999 899999
Q ss_pred HHHHHHHHHHc
Q 020747 308 VRGCIESLMEK 318 (322)
Q Consensus 308 l~~~~~~~~~~ 318 (322)
|+++++|++.+
T Consensus 298 l~~~~~~~~~~ 308 (317)
T 3ajr_A 298 IDDMIDHISEK 308 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999864
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=315.71 Aligned_cols=290 Identities=20% Similarity=0.213 Sum_probs=224.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~ 79 (322)
+++|+|||||||||||++|+++|+++| ++|++++|+..... ...+. ++. +.+|++|++.++++++ +
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~----~~~-~~~d~~~~~~~~~~~~~~~~~~ 115 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK---FVNLV----DLN-IADYMDKEDFLIQIMAGEEFGD 115 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG---GGGTT----TSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch---hhccc----Cce-EeeecCcHHHHHHHHhhcccCC
Confidence 345899999999999999999999999 99999998764321 11111 122 6789999999998887 5
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
+|+|||+||.... ...++...+++|+.++.+++++|.+. ++ +||++||. ++|+... ..+++|+++..|.
T Consensus 116 ~d~Vih~A~~~~~-~~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~-~v~g~~~----~~~~~E~~~~~p~--- 184 (357)
T 2x6t_A 116 VEAIFHEGACSST-TEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSA-ATYGGRT----SDFIESREYEKPL--- 184 (357)
T ss_dssp CCEEEECCSCCCT-TCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEG-GGGCSCS----SCCCSSGGGCCCS---
T ss_pred CCEEEECCcccCC-ccCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcch-HHhCCCC----CCCcCCcCCCCCC---
Confidence 9999999997654 34456789999999999999999997 77 99999999 5665543 4578888876664
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC---CCccHHHHHHHHcCCC--CCC---C-CCcceeH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI---LNFGAEVILNLINGDQ--SFA---F-PYIFVEI 230 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~--~~~---~-~~~~i~~ 230 (322)
+.|+.+|.++|++++.++++++++++++||+.+|||..... ......++..+..+.+ +++ + .++|+|+
T Consensus 185 ---~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 261 (357)
T 2x6t_A 185 ---NVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYV 261 (357)
T ss_dssp ---SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEH
T ss_pred ---ChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEH
Confidence 67999999999999999888899999999999999986532 1223445555666652 232 5 7899999
Q ss_pred HHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-----CCCCCccCCCCccccchHHHHhhCC-cc-c
Q 020747 231 RDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-----RSGKLEEKYQPTIKVSQERAKSLGI-NF-T 302 (322)
Q Consensus 231 ~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~k~~~lg~-~~-~ 302 (322)
+|+|++++.+++++. ++.|+++ ++.+|++|+++.+.+.+|... .+.+..........+|++|+++||| .| +
T Consensus 262 ~Dva~ai~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lG~~~~~~ 340 (357)
T 2x6t_A 262 GDVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFK 340 (357)
T ss_dssp HHHHHHHHHHHHHCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGGTTSCCSBCCCCCHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCC-CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCcccccccccccccCHHHHHHcCCCCCCC
Confidence 999999999998766 6688876 578999999999999987531 1111111223456789999966999 67 9
Q ss_pred chhhhHHHHHHHHHHc
Q 020747 303 PWEVGVRGCIESLMEK 318 (322)
Q Consensus 303 ~~~~~l~~~~~~~~~~ 318 (322)
+++++|+++++|++++
T Consensus 341 ~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 341 TVAEGVTEYMAWLNRD 356 (357)
T ss_dssp CHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999999753
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=309.77 Aligned_cols=286 Identities=20% Similarity=0.222 Sum_probs=214.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-----CCEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG-----CDGV 83 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~d~v 83 (322)
+|||||||||||++|+++|+++| ++|++++|+........+. ++. +.+|++|++.+++++++ +|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-------~~~-~~~d~~~~~~~~~~~~~~~~~~~d~v 72 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV-------DLN-IADYMDKEDFLIQIMAGEEFGDVEAI 72 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH-------TSC-CSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcC-------cce-eccccccHHHHHHHHhccccCCCcEE
Confidence 48999999999999999999999 9999999876432111111 122 67899999999999875 9999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
||+||.... ...++...+++|+.++.+++++|++. ++ +||++||. ++|+... ..+++|+++..|. +
T Consensus 73 i~~a~~~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~-~v~g~~~----~~~~~E~~~~~p~------~ 138 (310)
T 1eq2_A 73 FHEGACSST-TEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSA-ATYGGRT----SDFIESREYEKPL------N 138 (310)
T ss_dssp EECCSCCCT-TCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEG-GGGTTCC----SCBCSSGGGCCCS------S
T ss_pred EECcccccC-cccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeH-HHhCCCC----CCCCCCCCCCCCC------C
Confidence 999997654 34456789999999999999999998 78 99999999 5666543 4578888876665 6
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC---CCccHHHHHHHHcCCC--CCC---C-CCcceeHHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI---LNFGAEVILNLINGDQ--SFA---F-PYIFVEIRDVV 234 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~--~~~---~-~~~~i~~~D~a 234 (322)
.|+.+|.++|.+++.+++++|++++++||+.+|||..... ......++..+..+.+ +++ + .++|+|++|+|
T Consensus 139 ~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva 218 (310)
T 1eq2_A 139 VYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218 (310)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHH
Confidence 7999999999999999888899999999999999986421 1223445556666652 333 6 88999999999
Q ss_pred HHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-----CCCCCccCCCCccccchHHHHhhCC-cc-cchhh
Q 020747 235 YAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-----RSGKLEEKYQPTIKVSQERAKSLGI-NF-TPWEV 306 (322)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~k~~~lg~-~~-~~~~~ 306 (322)
++++.+++++. ++.|+++ ++.+|++|+++.+.+.+|... .+.+..........+|++|++.||| .| +++++
T Consensus 219 ~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~l~~ 297 (310)
T 1eq2_A 219 DVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297 (310)
T ss_dssp HHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHH
T ss_pred HHHHHHHhcCC-CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhhhcccccccccchHHHHhcCCCCCCCCHHH
Confidence 99999998766 6688876 578999999999999886431 1111111223456789999966999 67 99999
Q ss_pred hHHHHHHHHHHc
Q 020747 307 GVRGCIESLMEK 318 (322)
Q Consensus 307 ~l~~~~~~~~~~ 318 (322)
+|+++++|++++
T Consensus 298 ~l~~~~~~~~~~ 309 (310)
T 1eq2_A 298 GVTEYMAWLNRD 309 (310)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=310.86 Aligned_cols=279 Identities=16% Similarity=0.187 Sum_probs=219.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
+|+|||||||||||++|+++|+++|++|++++|+. .+|++|+++++++++ ++|+|||
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~---------------------~~D~~d~~~~~~~~~~~~~d~vih 61 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------ELNLLDSRAVHDFFASERIDQVYL 61 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc---------------------cCCccCHHHHHHHHHhcCCCEEEE
Confidence 48999999999999999999999999999887642 279999999999998 9999999
Q ss_pred cccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCC----CCccccc
Q 020747 86 TASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF----SNPVLCK 159 (322)
Q Consensus 86 ~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~----~~~~~~~ 159 (322)
+|+.... ....++...+++|+.++.+++++|++. ++++|||+||. .+|+... ..+++|+++ ..|.
T Consensus 62 ~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~-~vyg~~~----~~~~~E~~~~~~~~~p~--- 132 (321)
T 1e6u_A 62 AAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSS-CIYPKLA----KQPMAESELLQGTLEPT--- 132 (321)
T ss_dssp CCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCG-GGSCTTC----CSSBCGGGTTSSCCCGG---
T ss_pred cCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccH-HHcCCCC----CCCcCccccccCCCCCC---
Confidence 9997531 112345688999999999999999997 88999999998 6666543 567888763 3331
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC---CccHHHHHHHHc----C-C--CCCC---CCCc
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLIN----G-D--QSFA---FPYI 226 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~----g-~--~~~~---~~~~ 226 (322)
.+.|+.+|.++|++++.++++++++++++||+.+|||...... .....++..+.. | . .+++ +.++
T Consensus 133 --~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~ 210 (321)
T 1e6u_A 133 --NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMRE 210 (321)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEEC
T ss_pred --CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEE
Confidence 1479999999999999999888999999999999999865321 223344444433 3 2 2232 7789
Q ss_pred ceeHHHHHHHHHHhhcCCCC---------CccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCC-CCccCCCCccccchHHH
Q 020747 227 FVEIRDVVYAHIRALEVPKA---------SGRYLLA-GSVAQHSDILKFLREHYPTLL-RSG-KLEEKYQPTIKVSQERA 294 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~~---------~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~k~ 294 (322)
|+|++|+|++++.+++++.. +++|+++ ++.+|++|+++.+.+.++... +.. ...........+|++|+
T Consensus 211 ~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 290 (321)
T 1e6u_A 211 FLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRL 290 (321)
T ss_dssp EEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHH
T ss_pred eEEHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHH
Confidence 99999999999999987654 3688776 678999999999999987431 110 01122345678999999
Q ss_pred HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 295 KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 295 ~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+.|||+| ++++++|+++++|++.+
T Consensus 291 ~~lG~~p~~~~~~~l~~~~~~~~~~ 315 (321)
T 1e6u_A 291 HQLGWYHEISLEAGLASTYQWFLEN 315 (321)
T ss_dssp HHTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HhcCCccCCcHHHHHHHHHHHHHHH
Confidence 3399999 89999999999999865
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=315.24 Aligned_cols=301 Identities=19% Similarity=0.179 Sum_probs=225.5
Q ss_pred cEEEEECCcchhHHHHHHHHH-HCCCeEEEEEeCCCCcC-------hhhh----hhccCC--CCc---EEEEEccCCCcc
Q 020747 9 KVVCVTGASGFVASWLVKLLL-QRGYTVKATVRDPNSPK-------TEHL----RELDGA--TER---LHLFKANLLEEG 71 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~-------~~~~----~~~~~~--~~~---~~~~~~Dl~~~~ 71 (322)
|+|||||||||||++|+++|+ ++|++|++++|+..... .+.+ ..+... ..+ ++++.+|++|++
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 82 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCHH
Confidence 689999999999999999999 99999999998764420 1111 111111 123 889999999999
Q ss_pred chHHhhC--C-CCEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCC---CCCC
Q 020747 72 SFDSAVD--G-CDGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETP---MTPD 144 (322)
Q Consensus 72 ~~~~~~~--~-~d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~---~~~~ 144 (322)
+++++++ + +|+|||+||.... ....++...+++|+.++.+++++|++. ++++||++||. ++|+.... ....
T Consensus 83 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~SS~-~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 83 FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSA-AIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGTBSCCC-----CC
T ss_pred HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEECCH-HHhCCCCcccccccc
Confidence 9999887 6 9999999997532 112345789999999999999999987 88999999998 66654420 0013
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-------CCccHHHHH-----
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-------LNFGAEVIL----- 212 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-------~~~~~~~~~----- 212 (322)
.+++|+++..|. +.|+.+|.++|.+++.++.+++++++++||+++|||..... .......+.
T Consensus 161 ~~~~E~~~~~p~------~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~ 234 (397)
T 1gy8_A 161 EPIDINAKKSPE------SPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234 (397)
T ss_dssp CCBCTTSCCBCS------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHH
T ss_pred cCcCccCCCCCC------CchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHH
Confidence 578888876554 67999999999999999988899999999999999974211 111222222
Q ss_pred HHHcCCC--------------C--------CC-CCCcceeHHHHHHHHHHhhcCCC-C-----C---ccEEEe-cCCCCH
Q 020747 213 NLINGDQ--------------S--------FA-FPYIFVEIRDVVYAHIRALEVPK-A-----S---GRYLLA-GSVAQH 259 (322)
Q Consensus 213 ~~~~g~~--------------~--------~~-~~~~~i~~~D~a~~~~~~~~~~~-~-----~---g~~~~~-~~~~~~ 259 (322)
++..+.. + -+ +.++|+|++|+|++++.+++++. . + ++|+++ ++.+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~ 314 (397)
T 1gy8_A 235 DIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSV 314 (397)
T ss_dssp HHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEH
T ss_pred HHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccH
Confidence 3333321 1 12 66899999999999999987532 2 2 678876 678999
Q ss_pred HHHHHHHHHhCCCCCCCCCC---ccCCCCccccchHHH-HhhCCcc-c-chhhhHHHHHHHHHHc
Q 020747 260 SDILKFLREHYPTLLRSGKL---EEKYQPTIKVSQERA-KSLGINF-T-PWEVGVRGCIESLMEK 318 (322)
Q Consensus 260 ~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~k~-~~lg~~~-~-~~~~~l~~~~~~~~~~ 318 (322)
+|+++.+.+.++.. .+... .........+|++|+ +.|||+| + +++++|+++++|++.+
T Consensus 315 ~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~ 378 (397)
T 1gy8_A 315 REVIEVARKTTGHP-IPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (397)
T ss_dssp HHHHHHHHHHHCCC-CCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-CCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999988742 22111 122335678999999 8899999 6 9999999999999875
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=308.03 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=221.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
|+|||||||||||++++++|+++|++|++++|....... +.+.... ..++.++.+|++|+++++++++ ++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 479999999999999999999999999999875432211 1111111 2357889999999999998887 599999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+||.... .....+...+++|+.++.+++++|++. ++++||++||. ++|+... ..+++|+.+..+. .+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~-~~~g~~~----~~~~~e~~~~~~~-----~~ 147 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSA-TVYGDNP----KIPYVESFPTGTP-----QS 147 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEG-GGGCSCC----SSSBCTTSCCCCC-----SS
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccH-HHhCCCC----CCCcCcccCCCCC-----CC
Confidence 99996432 112234678999999999999999987 78999999998 6666543 5678888776441 16
Q ss_pred hHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCC------CC--CCccHHHHHHHHcCC-C---C------C--C
Q 020747 164 WYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQ------PI--LNFGAEVILNLINGD-Q---S------F--A 222 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~------~~--~~~~~~~~~~~~~g~-~---~------~--~ 222 (322)
.|+.||.++|.+++.++.++ +++++++||+++|||... +. .......+.....+. . + . +
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 227 (338)
T 1udb_A 148 PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG 227 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCC
Confidence 69999999999999999887 899999999999998421 11 111222333333322 1 1 1 1
Q ss_pred -CCCcceeHHHHHHHHHHhhcCC--CCC-ccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC---ccCCCCccccchHHH
Q 020747 223 -FPYIFVEIRDVVYAHIRALEVP--KAS-GRYLLA-GSVAQHSDILKFLREHYPTLLRSGKL---EEKYQPTIKVSQERA 294 (322)
Q Consensus 223 -~~~~~i~~~D~a~~~~~~~~~~--~~~-g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~k~ 294 (322)
+.++|+|++|+|++++.++++. ..+ ++||++ ++.+|++|+++.+.+.++.. ++... .........+|++|+
T Consensus 228 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~ 306 (338)
T 1udb_A 228 TGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKP-VNYHFAPRREGDLPAYWADASKA 306 (338)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSC-CCEEEECCCTTCCSBCCBCCHHH
T ss_pred ceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCC-CcceeCCCCCCchhhhhcCHHHH
Confidence 5689999999999999998753 233 478776 67899999999999988632 22111 122334567899999
Q ss_pred -HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 295 -KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 295 -~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
+.|||+| ++++++|+++++|++.+.
T Consensus 307 ~~~lG~~p~~~l~~~l~~~~~w~~~~~ 333 (338)
T 1udb_A 307 DRELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHhcc
Confidence 8899999 899999999999998753
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=304.92 Aligned_cols=291 Identities=17% Similarity=0.210 Sum_probs=222.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 82 (322)
.+++|+|||||||||||++|+++|+++|++|++++|+..... .....+ .+++++.+|++|+++++++++ ++|+
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~l----~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 91 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKR-EVLPPV----AGLSVIEGSVTDAGLLERAFDSFKPTH 91 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCG-GGSCSC----TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccch-hhhhcc----CCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence 456789999999999999999999999999999999654321 111111 468899999999999999998 9999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
|||+||........++. +++|+.++.+++++|.+. ++++||++||. ++|+.... ...+++|++ .+.
T Consensus 92 vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~-~~~~~~~~--~~~~~~E~~--~~~------ 157 (330)
T 2pzm_A 92 VVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKA-GVKRLLNFQTA-LCYGRPAT--VPIPIDSPT--APF------ 157 (330)
T ss_dssp EEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHH-TCSEEEEEEEG-GGGCSCSS--SSBCTTCCC--CCC------
T ss_pred EEECCccCCCccccChh--HHHHHHHHHHHHHHHHHc-CCCEEEEecCH-HHhCCCcc--CCCCcCCCC--CCC------
Confidence 99999975432222333 899999999999999987 78999999999 55654321 012778876 232
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-C-CCcceeHHHHHH-HHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-F-PYIFVEIRDVVY-AHIR 239 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~i~~~D~a~-~~~~ 239 (322)
+.|+.+|.++|.+++.+ +++++++||+++|||+.. ......++..+..+...++ . .++++|++|+|+ +++.
T Consensus 158 ~~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~a~~~ 231 (330)
T 2pzm_A 158 TSYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLA--IGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLS 231 (330)
T ss_dssp SHHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCC--SSHHHHHHHHHHTTCCCCEESCEECEEEHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCC--CCHHHHHHHHHHcCCEEeCCCCEecceeHHHHHHHHHHH
Confidence 56999999999998755 899999999999999852 2233444555555543333 3 578999999999 9999
Q ss_pred hhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCccccchHHH-----HhhCCcc-cchhhhHHHHH
Q 020747 240 ALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERA-----KSLGINF-TPWEVGVRGCI 312 (322)
Q Consensus 240 ~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~-----~~lg~~~-~~~~~~l~~~~ 312 (322)
+++++. ++.|+++ +..++++|+++.+.+.+|..++.............+|++|+ +.|||+| ++++++|++++
T Consensus 232 ~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~d~~k~~~~~l~~lG~~p~~~~~~~l~~~~ 310 (330)
T 2pzm_A 232 LQEGRP-TGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQL 310 (330)
T ss_dssp TSTTCC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCSSCCCEECCCTTSCSEECBCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_pred HhhcCC-CCEEEeCCCCCCCHHHHHHHHHHHhCCCCceeCCCCcchhhccCCHHHHhhchHHHcCCcccCCHHHHHHHHH
Confidence 998865 5688877 47899999999999988754111100011334556676666 7799999 99999999999
Q ss_pred HHHHHcCCC
Q 020747 313 ESLMEKGFL 321 (322)
Q Consensus 313 ~~~~~~~~~ 321 (322)
+|++.++++
T Consensus 311 ~~~~~~~~~ 319 (330)
T 2pzm_A 311 AWYDKYGVT 319 (330)
T ss_dssp HHHHHHCSC
T ss_pred HHHHhhCcc
Confidence 999988765
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=311.45 Aligned_cols=295 Identities=18% Similarity=0.135 Sum_probs=227.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC----CCC-cEEEEEccCCCccchHHhhCC--CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG----ATE-RLHLFKANLLEEGSFDSAVDG--CD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~-~~~~~~~Dl~~~~~~~~~~~~--~d 81 (322)
|+|||||||||||++|+++|+++|++|++++|+........+..+.. ... +++++.+|++|++++.+++++ +|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999865421111221111 012 688999999999999998885 69
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-----EEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-----RVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-----~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
+|||+||.... ....++...+++|+.++.+++++|.+. +++ +||++||. ++|+... . +++|+++..|
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~-~vyg~~~----~-~~~E~~~~~~ 181 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSS-EMFGSTP----P-PQSETTPFHP 181 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEG-GGGTTSC----S-SBCTTSCCCC
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcH-HHhCCCC----C-CCCCCCCCCC
Confidence 99999997543 112345788999999999999999987 665 99999998 6666543 4 8899887766
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CC--CC---CCCcc
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QS--FA---FPYIF 227 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~--~~---~~~~~ 227 (322)
. +.|+.+|.++|.+++.++.+++++++++|++++|||+...... ....++..+..|. .. ++ +.++|
T Consensus 182 ~------~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 255 (381)
T 1n7h_A 182 R------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDW 255 (381)
T ss_dssp C------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEEC
T ss_pred C------CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeee
Confidence 5 6799999999999999998889999999999999998643221 1223344455564 22 22 67899
Q ss_pred eeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-----CCCC-CccCCCCccccchHHH-HhhCC
Q 020747 228 VEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-----RSGK-LEEKYQPTIKVSQERA-KSLGI 299 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~k~-~~lg~ 299 (322)
+|++|+|++++.+++++. ++.|+++ ++.+|++|+++.+.+.+|... +... ..........+|++|+ +.|||
T Consensus 256 v~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 334 (381)
T 1n7h_A 256 GFAGDYVEAMWLMLQQEK-PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGW 334 (381)
T ss_dssp EEHHHHHHHHHHHHTSSS-CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCC
T ss_pred EEHHHHHHHHHHHHhCCC-CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCC
Confidence 999999999999998765 4788776 578999999999999987531 1110 0122334567899999 77999
Q ss_pred cc-cchhhhHHHHHHHHHH
Q 020747 300 NF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 300 ~~-~~~~~~l~~~~~~~~~ 317 (322)
+| ++++++|+++++|+.+
T Consensus 335 ~p~~~l~e~l~~~~~~~~~ 353 (381)
T 1n7h_A 335 KPQVGFEKLVKMMVDEDLE 353 (381)
T ss_dssp CCCSCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHh
Confidence 99 9999999999999875
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=303.11 Aligned_cols=292 Identities=21% Similarity=0.239 Sum_probs=219.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~v 83 (322)
+++|+|||||||||||++|+++|+++|++|++++|+..... +.+.. ..+++++.+|++|++++++++++ +|+|
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~l~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~D~v 93 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR-EHLKD----HPNLTFVEGSIADHALVNQLIGDLQPDAV 93 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-GGSCC----CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccch-hhHhh----cCCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence 45689999999999999999999999999999999754321 11111 14688999999999999999987 9999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
||+||........++ . +++|+.++.+++++|.+. ++++||++||. ++|+...... ..+++|++ .|. .+
T Consensus 94 ih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~-~~~g~~~~~~-~~~~~E~~--~p~-----~~ 161 (333)
T 2q1w_A 94 VHTAASYKDPDDWYN-D-TLTNCVGGSNVVQAAKKN-NVGRFVYFQTA-LCYGVKPIQQ-PVRLDHPR--NPA-----NS 161 (333)
T ss_dssp EECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHT-TCSEEEEEEEG-GGGCSCCCSS-SBCTTSCC--CCT-----TC
T ss_pred EECceecCCCccCCh-H-HHHHHHHHHHHHHHHHHh-CCCEEEEECcH-HHhCCCcccC-CCCcCCCC--CCC-----CC
Confidence 999997543212232 2 899999999999999997 88999999998 5665110000 22778876 211 04
Q ss_pred hHHHHHHHHHHHHHH-HHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC-C-CCCcceeHHHHHHHHHHh
Q 020747 164 WYSLAKTLAEEAAWK-FAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF-A-FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~-~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~i~~~D~a~~~~~~ 240 (322)
.|+.+|.++|.+++. ++ +++++||+++|||... ......++..+..+..++ + +.++++|++|+|++++.+
T Consensus 162 ~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~ 234 (333)
T 2q1w_A 162 SYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV--SGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRA 234 (333)
T ss_dssp HHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC--SSHHHHHHHHHHTTCCCEEEECEECEEEHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc--CcHHHHHHHHHHcCCeeeCCCceEeeEEHHHHHHHHHHH
Confidence 599999999999976 53 8999999999999832 123344555555554222 3 778999999999999999
Q ss_pred hcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCC---CCC--CccCCCCccccchHHHHhhCCcc-cchhhhHHHHHH
Q 020747 241 LEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLR---SGK--LEEKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIE 313 (322)
Q Consensus 241 ~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~---~~~--~~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~ 313 (322)
++++. ++.|+++ +..++++|+++.+.+.+|...+ |.. ..........+|++|++.+||+| ++++++|+++++
T Consensus 235 ~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l~~~~~ 313 (333)
T 2q1w_A 235 VDGVG-HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVA 313 (333)
T ss_dssp HTTCC-CEEEECSCSCCEEHHHHHHHHHHHTTCSSCCCCEEEECCTTSCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_pred HhcCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCceeCCCCCcccccccccccCCHHHHHhcCCCcCCCHHHHHHHHHH
Confidence 98866 5688776 5789999999999999875411 110 00112256789999993349999 999999999999
Q ss_pred HHHHcCCCC
Q 020747 314 SLMEKGFLS 322 (322)
Q Consensus 314 ~~~~~~~~~ 322 (322)
|+++++.+|
T Consensus 314 ~~~~~~~~~ 322 (333)
T 2q1w_A 314 YFREYGVSG 322 (333)
T ss_dssp HHHHHCC--
T ss_pred HHHHHCCCC
Confidence 999888764
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=303.89 Aligned_cols=266 Identities=14% Similarity=0.096 Sum_probs=216.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+|||||||||||++++++|+++|++|++++|. ++|++|+++++++++ ++|+|||+
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~D~~d~~~~~~~~~~~~~d~vi~~ 63 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------------LLDITNISQVQQVVQEIRPHIIIHC 63 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT----------------------TSCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc----------------------ccCCCCHHHHHHHHHhcCCCEEEEC
Confidence 489999999999999999999999999999882 279999999999998 79999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... ....++...+++|+.++.+++++|++. ++ +|||+||. .+|+... ..+++|+++..|. +.|
T Consensus 64 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~-~vy~~~~----~~~~~E~~~~~p~------~~Y 130 (287)
T 3sc6_A 64 AAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTD-YVFQGDR----PEGYDEFHNPAPI------NIY 130 (287)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEG-GGSCCCC----SSCBCTTSCCCCC------SHH
T ss_pred CcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchh-hhcCCCC----CCCCCCCCCCCCC------CHH
Confidence 997643 223566889999999999999999998 66 79999999 6666543 6789999988776 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-CCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
+.+|.++|++++.++ .+++++||+.+|||... .....++..+..+. .+.+ +.++|+|++|+|++++.+++
T Consensus 131 ~~sK~~~E~~~~~~~----~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 203 (287)
T 3sc6_A 131 GASKYAGEQFVKELH----NKYFIVRTSWLYGKYGN---NFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIH 203 (287)
T ss_dssp HHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC----CCcEEEeeeeecCCCCC---cHHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHHh
Confidence 999999999998663 47899999999999753 23344444455555 3334 78999999999999999999
Q ss_pred CCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC----CCCC---CccCCCCccccchHHHHhhCCcc-cchhhhHHHHHH
Q 020747 243 VPKASGRYLLA-GSVAQHSDILKFLREHYPTLL----RSGK---LEEKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIE 313 (322)
Q Consensus 243 ~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~----~~~~---~~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~ 313 (322)
++. +|.|+++ ++.+|++|+++.+++.+|... ++.. ..........+|++|++.|||.| ++++++|+++++
T Consensus 204 ~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~~~~ 282 (287)
T 3sc6_A 204 TSL-YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFI 282 (287)
T ss_dssp SCC-CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHH
T ss_pred CCC-CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHHhhCCCCCccHHHHHHHHHH
Confidence 876 7788776 578999999999999987431 2211 11233356789999999999999 999999999999
Q ss_pred HHHH
Q 020747 314 SLME 317 (322)
Q Consensus 314 ~~~~ 317 (322)
|++.
T Consensus 283 ~~~~ 286 (287)
T 3sc6_A 283 ETKS 286 (287)
T ss_dssp HTC-
T ss_pred HHhc
Confidence 9864
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=307.06 Aligned_cols=293 Identities=18% Similarity=0.148 Sum_probs=227.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-------CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-------YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV- 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~- 77 (322)
+++|+||||||+||||++|+++|+++| ++|++++|+...... ....++.++.+|++|++++++++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-------GFSGAVDARAADLSAPGEAEKLVE 84 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-------TCCSEEEEEECCTTSTTHHHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-------ccCCceeEEEcCCCCHHHHHHHHh
Confidence 567899999999999999999999999 899999997643311 11356889999999999999998
Q ss_pred CCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-----ccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 78 DGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-----IKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 78 ~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-----~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
.++|+|||+||........++...+++|+.|+.+++++|++. + +++||++||. ++|+... ..+++|+++
T Consensus 85 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~-~~~~~~~~~iv~~SS~-~~~~~~~----~~~~~E~~~ 158 (342)
T 2hrz_A 85 ARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIA-NGKDGYKPRVVFTSSI-AVFGAPL----PYPIPDEFH 158 (342)
T ss_dssp TCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEG-GGCCSSC----CSSBCTTCC
T ss_pred cCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhc-ccccCCCcEEEEeCch-HhhCCCC----CCCcCCCCC
Confidence 489999999997643223456788999999999999999987 4 7899999999 6665543 457899988
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccC-CCCCCCC--CccHHHHHHHHcCCC-CCC----CC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIG-PFFQPIL--NFGAEVILNLINGDQ-SFA----FP 224 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G-~~~~~~~--~~~~~~~~~~~~g~~-~~~----~~ 224 (322)
..+. +.|+.+|.++|.+++.++++++++.+++|++.+|| |+..... .....++.....|.+ .++ ..
T Consensus 159 ~~~~------~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (342)
T 2hrz_A 159 TTPL------TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIR 232 (342)
T ss_dssp CCCS------SHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCE
T ss_pred CCCc------chHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccc
Confidence 7765 67999999999999999988899999999999998 6543211 122344555566652 122 45
Q ss_pred CcceeHHHHHHHHHHhhcCCC----CCccEEEecCCCCHHHHHHHHHHhCCCCC------CCCCCc--cCCCCccccchH
Q 020747 225 YIFVEIRDVVYAHIRALEVPK----ASGRYLLAGSVAQHSDILKFLREHYPTLL------RSGKLE--EKYQPTIKVSQE 292 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~----~~g~~~~~~~~~~~~e~~~~i~~~~~~~~------~~~~~~--~~~~~~~~~~~~ 292 (322)
.+++|++|+|++++.+++.+. .++.|+++++.+|++|+++.+.+.+|... .|.... ........+|++
T Consensus 233 ~~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 312 (342)
T 2hrz_A 233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAK 312 (342)
T ss_dssp EEEECHHHHHHHHHHHHHSCHHHHCSCCEEECCCEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCH
T ss_pred eeeEehHHHHHHHHHHHhccccccCCccEEEcCCCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChH
Confidence 668999999999999998753 34588888888999999999999876321 111100 011122368999
Q ss_pred HHHhhCCcc-cchhhhHHHHHHHHHH
Q 020747 293 RAKSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 293 k~~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
|++.|||+| ++++++|+++++|++.
T Consensus 313 k~~~lG~~p~~~l~e~l~~~~~~~~~ 338 (342)
T 2hrz_A 313 RARELGFTAESSFEEIIQVHIEDELG 338 (342)
T ss_dssp HHHHTTCCCCSSHHHHHHHHHHHHST
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHhcC
Confidence 994499999 8999999999999974
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=302.21 Aligned_cols=273 Identities=14% Similarity=0.102 Sum_probs=216.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih~ 86 (322)
|+|||||||||||++++++|+ +|++|++++|+.. .+.+|++|++++++++++ +|+|||+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~------------------~~~~D~~d~~~~~~~~~~~~~d~vih~ 61 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK------------------EFCGDFSNPKGVAETVRKLRPDVIVNA 61 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS------------------SSCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc------------------cccccCCCHHHHHHHHHhcCCCEEEEC
Confidence 479999999999999999999 8999999988651 236899999999999886 9999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... ....++...+++|+.++.+++++|++. ++ +|||+||. ++|+... ..+++|+++..|. +.|
T Consensus 62 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~-~vy~~~~----~~~~~E~~~~~p~------~~Y 128 (299)
T 1n2s_A 62 AAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTD-YVFPGTG----DIPWQETDATSPL------NVY 128 (299)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEG-GGSCCCT----TCCBCTTSCCCCS------SHH
T ss_pred cccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecc-cEEeCCC----CCCCCCCCCCCCc------cHH
Confidence 997543 223556789999999999999999987 66 89999999 6666543 5688999887765 679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-CCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
+.+|.++|++++.++ .+++++||+.+|||... .....++..+..+. .+.+ +.++|+|++|+|++++.+++
T Consensus 129 ~~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 201 (299)
T 1n2s_A 129 GKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIR 201 (299)
T ss_dssp HHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCeEEEeeeeecCCCcC---cHHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHHH
Confidence 999999999998663 48999999999999754 23344455555565 2334 77999999999999999998
Q ss_pred CC--C--CCccEEEe-cCCCCHHHHHHHHHHhCCCC----------CCCCCC---ccCCCCccccchHHH-HhhCCcccc
Q 020747 243 VP--K--ASGRYLLA-GSVAQHSDILKFLREHYPTL----------LRSGKL---EEKYQPTIKVSQERA-KSLGINFTP 303 (322)
Q Consensus 243 ~~--~--~~g~~~~~-~~~~~~~e~~~~i~~~~~~~----------~~~~~~---~~~~~~~~~~~~~k~-~~lg~~~~~ 303 (322)
++ . .++.|+++ ++.+|++|+++.+.+.+|.. +.+... .........+|++|+ +.|||+|.+
T Consensus 202 ~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 281 (299)
T 1n2s_A 202 VALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQ 281 (299)
T ss_dssp HHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCB
T ss_pred HhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCCC
Confidence 75 2 25688776 57899999999999887422 111100 012234678999999 779999988
Q ss_pred hhhhHHHHHHHHHHcCC
Q 020747 304 WEVGVRGCIESLMEKGF 320 (322)
Q Consensus 304 ~~~~l~~~~~~~~~~~~ 320 (322)
++++|+++++|++++..
T Consensus 282 ~~~~l~~~~~~~~~~~~ 298 (299)
T 1n2s_A 282 WELGVKRMLTEMFTTTT 298 (299)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999987654
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=299.47 Aligned_cols=278 Identities=13% Similarity=0.137 Sum_probs=191.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih 85 (322)
+|+|||||||||||++|+++|+++|++|++++|+... .+ ++.+|++|++++++++++ +|+|||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih 66 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-------------PK--FEQVNLLDSNAVHHIIHDFQPHVIVH 66 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------------CHHHHHHHCCSEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-------------CC--eEEecCCCHHHHHHHHHhhCCCEEEE
Confidence 3799999999999999999999999999999986532 11 678999999999998884 899999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
+||.... ....++...+++|+.++.+++++|.+. ++ +|||+||. .+|+.. ..+++|+++..|. +.
T Consensus 67 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~-~v~~~~-----~~~~~E~~~~~~~------~~ 132 (315)
T 2ydy_A 67 CAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSD-YVFDGT-----NPPYREEDIPAPL------NL 132 (315)
T ss_dssp CC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEG-GGSCSS-----SCSBCTTSCCCCC------SH
T ss_pred CCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchH-HHcCCC-----CCCCCCCCCCCCc------CH
Confidence 9997543 234556789999999999999999997 65 99999999 555542 5678999877665 67
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHH-cCCC--CCC-CCCcceeHHHHHHHHHHh
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI-NGDQ--SFA-FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~-~g~~--~~~-~~~~~i~~~D~a~~~~~~ 240 (322)
|+.+|.++|++++.+ +++++++||+.|||+...+.......++..+. .+.+ ..+ +.++++|++|+|++++.+
T Consensus 133 Y~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 208 (315)
T 2ydy_A 133 YGKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQL 208 (315)
T ss_dssp HHHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHHHHHH
Confidence 999999999999765 57889999999999986521112222344444 4542 223 788999999999999999
Q ss_pred hcCC----CCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-----CCCCC--ccCCCCccccchHHHHhhCCcc-cchhhh
Q 020747 241 LEVP----KASGRYLLA-GSVAQHSDILKFLREHYPTLL-----RSGKL--EEKYQPTIKVSQERAKSLGINF-TPWEVG 307 (322)
Q Consensus 241 ~~~~----~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-----~~~~~--~~~~~~~~~~~~~k~~~lg~~~-~~~~~~ 307 (322)
++++ ..++.|+++ ++.+|+.|+++.+.+.+|... ++... .........+|++|++.+||+| ++++++
T Consensus 209 ~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~ 288 (315)
T 2ydy_A 209 AEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIG 288 (315)
T ss_dssp HHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHTTCCCCCCHHHH
T ss_pred HHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhcCCCCCCCHHHH
Confidence 8753 345688776 578999999999999987431 22100 1122346789999994449998 999999
Q ss_pred HHHHHHHHHHc
Q 020747 308 VRGCIESLMEK 318 (322)
Q Consensus 308 l~~~~~~~~~~ 318 (322)
|+++++|++.+
T Consensus 289 l~~~~~~~~~~ 299 (315)
T 2ydy_A 289 IKESLWPFLID 299 (315)
T ss_dssp HHHHHGGGCC-
T ss_pred HHHHHHHHccc
Confidence 99999998654
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=294.36 Aligned_cols=265 Identities=14% Similarity=0.051 Sum_probs=213.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
.|+|||||||||||++|+++|+++|++|++++|+ .+|++|+++++++++ ++|+|||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~Dl~d~~~~~~~~~~~~~d~vih 69 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------------DLDITNVLAVNKFFNEKKPNVVIN 69 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT----------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc----------------------cCCCCCHHHHHHHHHhcCCCEEEE
Confidence 4899999999999999999999999999999875 279999999999998 7999999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
+||.... ....++...+++|+.++.+++++|++. ++ +||++||. ++|+... ..+++|+++..|. +.
T Consensus 70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~-~v~~~~~----~~~~~E~~~~~~~------~~ 136 (292)
T 1vl0_A 70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTD-YVFDGEA----KEPITEFDEVNPQ------SA 136 (292)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEG-GGSCSCC----SSCBCTTSCCCCC------SH
T ss_pred CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechH-HeECCCC----CCCCCCCCCCCCc------cH
Confidence 9997532 122455789999999999999999997 77 99999999 6665543 5688999887765 67
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-CCCcceeHHHHHHHHHHhh
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~i~~~D~a~~~~~~~ 241 (322)
|+.+|.++|.+++.+ +.+++++||+.+||| .. .....++..+..+. .+.+ +.++++|++|+|++++.++
T Consensus 137 Y~~sK~~~E~~~~~~----~~~~~~lR~~~v~G~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~ 208 (292)
T 1vl0_A 137 YGKTKLEGENFVKAL----NPKYYIVRTAWLYGD-GN---NFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVI 208 (292)
T ss_dssp HHHHHHHHHHHHHHH----CSSEEEEEECSEESS-SS---CHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh----CCCeEEEeeeeeeCC-Cc---ChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHH
Confidence 999999999999865 457999999999999 32 22334444455555 2234 7789999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC----CCCCCCc---cCCCCccccchHHH-HhhCCcccchhhhHHHHH
Q 020747 242 EVPKASGRYLLA-GSVAQHSDILKFLREHYPTL----LRSGKLE---EKYQPTIKVSQERA-KSLGINFTPWEVGVRGCI 312 (322)
Q Consensus 242 ~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~----~~~~~~~---~~~~~~~~~~~~k~-~~lg~~~~~~~~~l~~~~ 312 (322)
+++ .++.|+++ ++.+|++|+++.+.+.++.. ++|.+.. ........+|++|+ +.|||+|.+++++|++++
T Consensus 209 ~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l~~~~ 287 (292)
T 1vl0_A 209 DEK-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYI 287 (292)
T ss_dssp HHT-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHH
T ss_pred hcC-CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCCCHHHHHHHHH
Confidence 876 56688776 57899999999999988743 1232211 12234678999999 779999999999999999
Q ss_pred HHHH
Q 020747 313 ESLM 316 (322)
Q Consensus 313 ~~~~ 316 (322)
+|++
T Consensus 288 ~~~~ 291 (292)
T 1vl0_A 288 DLLQ 291 (292)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9985
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=320.93 Aligned_cols=301 Identities=17% Similarity=0.233 Sum_probs=230.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc-hHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS-FDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~v 83 (322)
+++|+|||||||||||++|+++|+++ |++|++++|+..... .+. ...+++++.+|++|+++ ++++++++|+|
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~--~~~----~~~~v~~v~~Dl~d~~~~~~~~~~~~D~V 386 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--RFL----NHPHFHFVEGDISIHSEWIEYHVKKCDVV 386 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTG--GGT----TCTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhh--hhc----cCCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence 35689999999999999999999998 899999999865431 111 13568999999999865 77788899999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccc-ccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLC-KEN 161 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~-~~~ 161 (322)
||+||.... ....++...+++|+.++.+++++|.+. + ++||++||. ++|+... ..+++|+++..+..+ ..+
T Consensus 387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~-~vyg~~~----~~~~~E~~~~~~~~p~~~p 459 (660)
T 1z7e_A 387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTS-EVYGMCS----DKYFDEDHSNLIVGPVNKP 459 (660)
T ss_dssp EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCG-GGGBTCC----SSSBCTTTCCEEECCTTCT
T ss_pred EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecH-HHcCCCC----CcccCCCccccccCcccCC
Confidence 999997542 122345688999999999999999997 6 899999998 5665543 557888875421110 122
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-------CCccHHHHHHHHcCCC--CCC---CCCccee
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-------LNFGAEVILNLINGDQ--SFA---FPYIFVE 229 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-------~~~~~~~~~~~~~g~~--~~~---~~~~~i~ 229 (322)
.+.|+.||.++|.+++.+++++|++++++||+++|||..... ......++..+..|.+ +++ +.++|+|
T Consensus 460 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 539 (660)
T 1z7e_A 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD 539 (660)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEE
Confidence 367999999999999999888899999999999999986431 1223455666666663 222 7789999
Q ss_pred HHHHHHHHHHhhcCCC---CCccEEEec-C-CCCHHHHHHHHHHhCCCC----CCCCCCc-------------cCCCCcc
Q 020747 230 IRDVVYAHIRALEVPK---ASGRYLLAG-S-VAQHSDILKFLREHYPTL----LRSGKLE-------------EKYQPTI 287 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~---~~g~~~~~~-~-~~~~~e~~~~i~~~~~~~----~~~~~~~-------------~~~~~~~ 287 (322)
++|+|++++.+++++. .+++|++++ + .+|++|+++.+.+.++.. .+|.+.. .......
T Consensus 540 v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 619 (660)
T 1z7e_A 540 IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHR 619 (660)
T ss_dssp HHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCC
T ss_pred HHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhc
Confidence 9999999999998754 334788775 4 799999999999887532 2232210 0123456
Q ss_pred ccchHHH-HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 288 KVSQERA-KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 288 ~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
.+|++|+ +.|||+| ++++++|+++++|++++.
T Consensus 620 ~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~ 653 (660)
T 1z7e_A 620 KPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653 (660)
T ss_dssp CBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTS
T ss_pred ccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhc
Confidence 7899999 7899999 999999999999998765
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=320.81 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=225.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC--CCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD--GCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 81 (322)
+++|+|||||||||||++|+++|+++|++|++++|+...... ..+..+. ..+++++.+|++|+++++++++ ++|
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~D 86 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKID 86 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence 456899999999999999999999999999999997654321 1111111 2457889999999999999988 899
Q ss_pred EEEEcccCcccC-CCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 82 GVFHTASPVIFL-SDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 82 ~vih~A~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
+|||+||..... ....+...+++|+.++.+++++|++. ++++||++||. ++|+.........+++|+++..|.
T Consensus 87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~-~vyg~~~~~~~~~~~~E~~~~~p~---- 160 (699)
T 1z45_A 87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSA-TVYGDATRFPNMIPIPEECPLGPT---- 160 (699)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEG-GGGCCGGGSTTCCSBCTTSCCCCC----
T ss_pred EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcH-HHhCCCccccccCCccccCCCCCC----
Confidence 999999975321 12234578999999999999999987 88999999998 556543211113567888776654
Q ss_pred cchhHHHHHHHHHHHHHHHHHH--cCccEEEEcCCCccCCCCCCC--------CCccHHHHHHHHcC--C--CCC-----
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKE--NGIDLVAIHPGTVIGPFFQPI--------LNFGAEVILNLING--D--QSF----- 221 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~rp~~v~G~~~~~~--------~~~~~~~~~~~~~g--~--~~~----- 221 (322)
+.|+.+|.++|++++.++.+ .+++++++||+++|||..... .......+.+...+ . .++
T Consensus 161 --~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 238 (699)
T 1z45_A 161 --NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYD 238 (699)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC-----
T ss_pred --ChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCccc
Confidence 67999999999999999877 699999999999999853210 01222334444443 2 221
Q ss_pred ---C-CCCcceeHHHHHHHHHHhhcCC------C-CCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCc
Q 020747 222 ---A-FPYIFVEIRDVVYAHIRALEVP------K-ASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPT 286 (322)
Q Consensus 222 ---~-~~~~~i~~~D~a~~~~~~~~~~------~-~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~ 286 (322)
+ +.++|||++|+|++++.+++.. . .+++|+++ ++.+|++|+++.+++.++.. .+.... ......
T Consensus 239 ~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~ 317 (699)
T 1z45_A 239 SRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGID-LPYKVTGRRAGDVLN 317 (699)
T ss_dssp -CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCC-CCC---------CCC
T ss_pred CCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCC-CCceecCCCCCcccc
Confidence 2 6789999999999999988642 1 23478775 67899999999999988642 221111 223456
Q ss_pred cccchHHH-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 287 IKVSQERA-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 287 ~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
..+|++|+ +.|||+| ++++++|+++++|++++..
T Consensus 318 ~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~ 353 (699)
T 1z45_A 318 LTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPF 353 (699)
T ss_dssp CCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 78999999 8899999 9999999999999987643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=286.25 Aligned_cols=260 Identities=17% Similarity=0.197 Sum_probs=203.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|||||| ||||++|+++|+++|++|++++|+.... ..+. ..+++++.+|++|.+ ++++|+|||+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~-----~~~~~~~~~D~~d~~-----~~~~d~vi~~a 71 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM--EAIR-----ASGAEPLLWPGEEPS-----LDGVTHLLIST 71 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGH--HHHH-----HTTEEEEESSSSCCC-----CTTCCEEEECC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhh--hhHh-----hCCCeEEEecccccc-----cCCCCEEEECC
Confidence 379999998 9999999999999999999999976432 1121 145899999999954 78999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhc-CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV-HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
+..... . ..+.++++++++. .++++|||+||. ++|+... ..+++|+++..|. +.|+
T Consensus 72 ~~~~~~--~----------~~~~~l~~a~~~~~~~~~~~v~~Ss~-~vyg~~~----~~~~~E~~~~~p~------~~Y~ 128 (286)
T 3ius_A 72 APDSGG--D----------PVLAALGDQIAARAAQFRWVGYLSTT-AVYGDHD----GAWVDETTPLTPT------AARG 128 (286)
T ss_dssp CCBTTB--C----------HHHHHHHHHHHHTGGGCSEEEEEEEG-GGGCCCT----TCEECTTSCCCCC------SHHH
T ss_pred Cccccc--c----------HHHHHHHHHHHhhcCCceEEEEeecc-eecCCCC----CCCcCCCCCCCCC------CHHH
Confidence 865321 1 1357889999883 278999999999 6776654 6689999988876 7799
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-C-CCC--CCCcceeHHHHHHHHHHhhc
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-Q-SFA--FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~-~~~--~~~~~i~~~D~a~~~~~~~~ 242 (322)
.+|.++|++++.+ .+++++++||+.+|||..... .++..|. . +.. +.++|+|++|+|++++.+++
T Consensus 129 ~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 197 (286)
T 3ius_A 129 RWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF--------SKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMA 197 (286)
T ss_dssp HHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS--------TTSSSSCCCEEECTTCCBCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---cCCCEEEEeccceECCCchHH--------HHHhcCCccccCCCCcccceEEHHHHHHHHHHHHh
Confidence 9999999999876 599999999999999985432 2233444 2 222 78999999999999999999
Q ss_pred CCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC---CCCCCc-------cCCCCccccchHHH-HhhCCcc-c-chhhhH
Q 020747 243 VPKASGRYLLA-GSVAQHSDILKFLREHYPTLL---RSGKLE-------EKYQPTIKVSQERA-KSLGINF-T-PWEVGV 308 (322)
Q Consensus 243 ~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~---~~~~~~-------~~~~~~~~~~~~k~-~~lg~~~-~-~~~~~l 308 (322)
++..++.|+++ ++.+|+.|+++.+.+.++... ++.... ........+|++|+ +.|||+| + +++++|
T Consensus 198 ~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l 277 (286)
T 3ius_A 198 RPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGL 277 (286)
T ss_dssp SCCTTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHH
T ss_pred CCCCCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHH
Confidence 88766688776 678999999999999987432 111110 11236678999999 6799999 7 799999
Q ss_pred HHHHHH
Q 020747 309 RGCIES 314 (322)
Q Consensus 309 ~~~~~~ 314 (322)
+++++.
T Consensus 278 ~~~~~~ 283 (286)
T 3ius_A 278 EALQAD 283 (286)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=285.93 Aligned_cols=290 Identities=14% Similarity=0.127 Sum_probs=222.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-----CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC---C
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-----YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG---C 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~ 80 (322)
|+|||||||||||++|+++|+++| ++|++++|+..... . ...+++++.+|++|++++++++++ +
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 73 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------H--EDNPINYVQCDISDPDDSQAKLSPLTDV 73 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------C--CSSCCEEEECCTTSHHHHHHHHTTCTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------c--ccCceEEEEeecCCHHHHHHHHhcCCCC
Confidence 789999999999999999999999 99999999875532 0 134688999999999999999998 9
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEE-------EecchhhhccCCCCCCCCccccCCCC
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVV-------LTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i-------~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|+|||+||... .++...+++|+.++.+++++|++.. ++++|| |+||. ++|+.... ...+++|+++
T Consensus 74 d~vih~a~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~-~vyg~~~~--~~~~~~E~~~ 146 (364)
T 2v6g_A 74 THVFYVTWANR----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPF-ESYGKIES--HDPPYTEDLP 146 (364)
T ss_dssp CEEEECCCCCC----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCG-GGTTTSCC--CCSSBCTTSC
T ss_pred CEEEECCCCCc----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEech-hhcccccc--CCCCCCcccc
Confidence 99999999752 3457899999999999999999852 588997 79998 56655321 1457889887
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcC-ccEEEEcCCCccCCCCCCCCCc-cHHHHHHHH---cCCC-C-CC---
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENG-IDLVAIHPGTVIGPFFQPILNF-GAEVILNLI---NGDQ-S-FA--- 222 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~~~---~g~~-~-~~--- 222 (322)
..+. .+.| ..+|+++++++++++ ++++++||+.+|||........ ...++.+.+ .|.+ . .+
T Consensus 147 ~~~~-----~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 217 (364)
T 2v6g_A 147 RLKY-----MNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKA 217 (364)
T ss_dssp CCSS-----CCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHH
T ss_pred CCcc-----chhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcc
Confidence 6552 1457 358999988887777 9999999999999987643222 222233333 4552 2 22
Q ss_pred ---CCCcceeHHHHHHHHHHhhcCCCCCc-cEEEe-cCCCCHHHHHHHHHHhCCCC------CCCCCCc-----------
Q 020747 223 ---FPYIFVEIRDVVYAHIRALEVPKASG-RYLLA-GSVAQHSDILKFLREHYPTL------LRSGKLE----------- 280 (322)
Q Consensus 223 ---~~~~~i~~~D~a~~~~~~~~~~~~~g-~~~~~-~~~~~~~e~~~~i~~~~~~~------~~~~~~~----------- 280 (322)
...+++|++|+|++++.+++++...| +|+++ ++.+|++|+++.+++.+|.. .+|.+..
T Consensus 218 ~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~ 297 (364)
T 2v6g_A 218 AWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWE 297 (364)
T ss_dssp HHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHHH
Confidence 34788899999999999998865445 88877 46799999999999988642 2332200
Q ss_pred --------cCC---C------------Cc-cccchHHHHhhCCcc-cchhhhHHHHHHHHHHcCCCC
Q 020747 281 --------EKY---Q------------PT-IKVSQERAKSLGINF-TPWEVGVRGCIESLMEKGFLS 322 (322)
Q Consensus 281 --------~~~---~------------~~-~~~~~~k~~~lg~~~-~~~~~~l~~~~~~~~~~~~~~ 322 (322)
... . .. ..+|++|++.|||+| ++++++++++++|+++++++|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~g~lp 364 (364)
T 2v6g_A 298 EIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364 (364)
T ss_dssp HHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCccccccccccchhhhccccchhhcchHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 000 0 33 589999994499998 999999999999999999886
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=281.07 Aligned_cols=268 Identities=19% Similarity=0.193 Sum_probs=200.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|||||||||||||++|+++|+++||+|++++|++... . +..| +.....++++|+|||+|+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-------------~---~~~~----~~~~~~l~~~d~vihla~ 60 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-------------R---ITWD----ELAASGLPSCDAAVNLAG 60 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------E---EEHH----HHHHHCCCSCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-------------e---eecc----hhhHhhccCCCEEEEecc
Confidence 5799999999999999999999999999999975432 1 1222 122345678999999998
Q ss_pred Cccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 89 PVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
.... +.......+++.|+.+|.+++++++... +.++||++||. ++|+... ..+.+|+++..+.
T Consensus 61 ~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~-~vyg~~~----~~~~~E~~p~~~~------ 129 (298)
T 4b4o_A 61 ENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGV-AYYQPSL----TAEYDEDSPGGDF------ 129 (298)
T ss_dssp CCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEG-GGSCCCS----SCCBCTTCCCSCS------
T ss_pred CcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeee-eeecCCC----CCcccccCCcccc------
Confidence 5322 1222345688999999999999998862 23458888988 7777665 7788999887765
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---CCCcceeHHHHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---FPYIFVEIRDVVYAHI 238 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~~~i~~~D~a~~~~ 238 (322)
+.|+..|...|... +....+++++++||+.||||... ....+......+. ..++ +.++|||++|+|++++
T Consensus 130 ~~~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~~----~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~ 203 (298)
T 4b4o_A 130 DFFSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGGG----AMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILT 203 (298)
T ss_dssp SHHHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTSH----HHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHH
T ss_pred chhHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCCC----chhHHHHHHhcCCcceecccCceeecCcHHHHHHHHH
Confidence 55888877777643 23346899999999999999742 2233334444455 3333 8899999999999999
Q ss_pred HhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC---CCCCCCc---------cCCCCccccchHHHHhhCCcc--cc
Q 020747 239 RALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL---LRSGKLE---------EKYQPTIKVSQERAKSLGINF--TP 303 (322)
Q Consensus 239 ~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~---~~~~~~~---------~~~~~~~~~~~~k~~~lg~~~--~~ 303 (322)
.+++++...|.||++ ++++|++|+++.+++.++.. ++|.+.. .....+..++++|++++||++ ++
T Consensus 204 ~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~~Gf~f~yp~ 283 (298)
T 4b4o_A 204 HALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLATGYQYSFPE 283 (298)
T ss_dssp HHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHHHTTCCCSCCS
T ss_pred HHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHHhcchhHHHhhCCCEEcHHHHHHCCCCCCCCC
Confidence 999998888899776 68899999999999998642 3443322 111234567889998899998 46
Q ss_pred hhhhHHHHHH
Q 020747 304 WEVGVRGCIE 313 (322)
Q Consensus 304 ~~~~l~~~~~ 313 (322)
++++|+++++
T Consensus 284 l~~al~~l~~ 293 (298)
T 4b4o_A 284 LGAALKEIAE 293 (298)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=290.52 Aligned_cols=273 Identities=18% Similarity=0.151 Sum_probs=201.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|||||||||||++|+++|+++|++|++++|+.... ..+.+|+.+. +..+++++|+|||+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~---------------~~v~~d~~~~--~~~~l~~~D~Vih~A 209 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP---------------GKRFWDPLNP--ASDLLDGADVLVHLA 209 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT---------------TCEECCTTSC--CTTTTTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc---------------cceeecccch--hHHhcCCCCEEEECC
Confidence 68999999999999999999999999999999987542 1256787653 466778999999999
Q ss_pred cCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhcc-CCCCCCCCccccCCCCCCcccccccchh
Q 020747 88 SPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLL-NETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 88 ~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~-~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
|.... .....+..++++|+.++.++++++.+..++++|||+||. ++|+ ... ..+++|+++. +. +.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~-~vyg~~~~----~~~~~E~~~~-~~------~~ 277 (516)
T 3oh8_A 210 GEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAV-GFYGHDRG----DEILTEESES-GD------DF 277 (516)
T ss_dssp CC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEG-GGGCSEEE----EEEECTTSCC-CS------SH
T ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcc-eEecCCCC----CCccCCCCCC-Cc------Ch
Confidence 97532 234455678999999999999994443488999999999 6666 332 5688998876 32 56
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---CCCcceeHHHHHHHHHHh
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~~~i~~~D~a~~~~~~ 240 (322)
|+.+|...|.++.. +...|++++++||+++|||.. .....+...+..|. ..++ +.++|+|++|+|++++.+
T Consensus 278 y~~~~~~~E~~~~~-~~~~gi~~~ilRp~~v~Gp~~----~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~ 352 (516)
T 3oh8_A 278 LAEVCRDWEHATAP-ASDAGKRVAFIRTGVALSGRG----GMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRA 352 (516)
T ss_dssp HHHHHHHHHHTTHH-HHHTTCEEEEEEECEEEBTTB----SHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhCCCCEEEEEeeEEECCCC----ChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHH
Confidence 99999999987654 456799999999999999973 12222232233333 3333 778999999999999999
Q ss_pred hcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC---CCCCCCcc----------CCCCccccchHHHHhhCCcc-cc-h
Q 020747 241 LEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL---LRSGKLEE----------KYQPTIKVSQERAKSLGINF-TP-W 304 (322)
Q Consensus 241 ~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~---~~~~~~~~----------~~~~~~~~~~~k~~~lg~~~-~~-~ 304 (322)
++++...|.||++ ++.+|++|+++.+++.++.. ++|.+... ....+..++++|++.+||+| ++ +
T Consensus 353 l~~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~lG~~~~~~~l 432 (516)
T 3oh8_A 353 IVDAQISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYTDI 432 (516)
T ss_dssp HHCTTCCEEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHHHTTCCCSCSSH
T ss_pred HhCcccCCcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHHCCCCCCCCCH
Confidence 9987777888766 68899999999999987632 23333211 11235567889998899999 66 9
Q ss_pred hhhHHHHHHH
Q 020747 305 EVGVRGCIES 314 (322)
Q Consensus 305 ~~~l~~~~~~ 314 (322)
+++|+++++.
T Consensus 433 ~e~l~~~l~~ 442 (516)
T 3oh8_A 433 GAAIAHELGY 442 (516)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCc
Confidence 9999999864
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=278.36 Aligned_cols=300 Identities=15% Similarity=0.133 Sum_probs=212.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhh-c---------cCCCCcEEEEEccCCCccchH
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRE-L---------DGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~-~---------~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
+.+|+|||||||||||++|+++|+++|++|++++|+...... ..+.. + .....++.++.+|++|++.+.
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 346899999999999999999999999999999998752211 11100 0 001357999999999988888
Q ss_pred HhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCC-CCCCCccccCCCCC
Q 020747 75 SAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNET-PMTPDVVIDETWFS 153 (322)
Q Consensus 75 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~-~~~~~~~~~E~~~~ 153 (322)
.+.++|+|||+||.... ..++...+++|+.++.+++++|.+ ++++||++||..+ |... ......+++|+++.
T Consensus 147 -~~~~~d~Vih~A~~~~~--~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~--G~~~~~~~~~~~~~E~~~~ 219 (427)
T 4f6c_A 147 -LPENMDTIIHAGARTDH--FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV--GTYFDIDTEDVTFSEADVY 219 (427)
T ss_dssp -CSSCCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG--GSEECSSCSCCEECTTCSC
T ss_pred -CcCCCCEEEECCcccCC--CCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh--CCCccCCCCCccccccccc
Confidence 77899999999997643 345678999999999999999998 5789999999954 3321 11226688998874
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC------ccHHHHHHHHcCCC-CC--C-C
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN------FGAEVILNLINGDQ-SF--A-F 223 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~------~~~~~~~~~~~g~~-~~--~-~ 223 (322)
.+. .+.+.|+.+|.++|.+++.+++ .|++++++|||+|||+....... ....++.....+.. .. + .
T Consensus 220 ~~~---~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (427)
T 4f6c_A 220 KGQ---LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEM 295 (427)
T ss_dssp SSC---CCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTC
T ss_pred cCC---CCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccc
Confidence 432 1236799999999999999864 69999999999999998654321 13344555555441 11 2 7
Q ss_pred CCcceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCC--CCc---c-------------CCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSG--KLE---E-------------KYQ 284 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~--~~~---~-------------~~~ 284 (322)
.++|+|++|+|++++.++.++..+++|+++ ++.+++.|+++.+++ ++...++. |.. . ...
T Consensus 296 ~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 374 (427)
T 4f6c_A 296 PVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KEIELVSDESFNEILQKQDMYETIGLTSVDREQ 374 (427)
T ss_dssp EECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SCCEEECHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred eEEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cCCcccCHHHHHHHHHhcCchhhhhhhhccccC
Confidence 889999999999999999887755588776 678999999999998 44211211 110 0 022
Q ss_pred CccccchHHH----HhhCCcccch-hhhHHHHHHHHHH
Q 020747 285 PTIKVSQERA----KSLGINFTPW-EVGVRGCIESLME 317 (322)
Q Consensus 285 ~~~~~~~~k~----~~lg~~~~~~-~~~l~~~~~~~~~ 317 (322)
....+|+.+. +.+||.++++ ++.+++++++++.
T Consensus 375 ~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~ 412 (427)
T 4f6c_A 375 QLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKT 412 (427)
T ss_dssp EECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 3456666554 5579998444 4489999888875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=252.91 Aligned_cols=219 Identities=25% Similarity=0.287 Sum_probs=171.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|+|||||||||++++++|+++|++|++++|+++.... + ..+++++.+|++|+++++++++++|+|||+|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~---~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-----E---NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC-----C---CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh-----c---cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 4799999999999999999999999999999998644321 1 2568999999999999999999999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
+.... . ...+++|+.++.++++++++. ++++||++||..++++.+. ...|+.+..|. +.|+.
T Consensus 76 ~~~~~----~-~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~~------~~~~~~~~~p~------~~Y~~ 137 (227)
T 3dhn_A 76 NPGWN----N-PDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPG------LRLMDSGEVPE------NILPG 137 (227)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEETT------EEGGGTTCSCG------GGHHH
T ss_pred cCCCC----C-hhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCCC------CccccCCcchH------HHHHH
Confidence 86421 1 247899999999999999998 8899999999966655432 22344444444 67999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcCCC
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
+|.++|.+++.++++++++++++||+.+|||........ ..+. +... ..++|+|++|+|++++.+++++.
T Consensus 138 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~ 209 (227)
T 3dhn_A 138 VKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR--------LGKDDMIVDIVGNSHISVEDYAAAMIDELEHPK 209 (227)
T ss_dssp HHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE--------EESSBCCCCTTSCCEEEHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhccCccEEEEeCCcccCCCcccccee--------ecCCCcccCCCCCcEEeHHHHHHHHHHHHhCcc
Confidence 999999999999878899999999999999976532211 1122 2223 45899999999999999999987
Q ss_pred CCc-cEEEe-cCCCCHH
Q 020747 246 ASG-RYLLA-GSVAQHS 260 (322)
Q Consensus 246 ~~g-~~~~~-~~~~~~~ 260 (322)
..| +|+++ +++.++.
T Consensus 210 ~~g~~~~~~~~~~~~~~ 226 (227)
T 3dhn_A 210 HHQERFTIGYLEHHHHH 226 (227)
T ss_dssp CCSEEEEEECCSCCC--
T ss_pred ccCcEEEEEeehhcccC
Confidence 666 77665 5777664
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=260.40 Aligned_cols=258 Identities=19% Similarity=0.182 Sum_probs=198.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih~ 86 (322)
|+|+|||||||||++++++|+ +|++|++++|+.... .+ +.+|++|++++++++++ +|+|||+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~ 64 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ------------GG---YKLDLTDFPRLEDFIIKKRPDVIINA 64 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT------------TC---EECCTTSHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC------------CC---ceeccCCHHHHHHHHHhcCCCEEEEC
Confidence 369999999999999999999 589999999976321 11 78999999999999886 9999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... ....++...+++|+.++.++++++++. ++ +||++||. .+|+.. ..+++|+++..|. +.|
T Consensus 65 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~-~~~~~~-----~~~~~e~~~~~~~------~~Y 130 (273)
T 2ggs_A 65 AAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTD-YVFDGE-----KGNYKEEDIPNPI------NYY 130 (273)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEG-GGSCSS-----SCSBCTTSCCCCS------SHH
T ss_pred CcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecc-eeEcCC-----CCCcCCCCCCCCC------CHH
Confidence 997543 112356789999999999999999987 65 99999999 455433 3378888877664 679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC--CCCCCcceeHHHHHHHHHHhhcC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS--FAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
+.+|.++|.+++. ++++++||+.+||+. .....++..+..+.++ .+..++++|++|+|++++.++++
T Consensus 131 ~~sK~~~e~~~~~------~~~~~iR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~ 199 (273)
T 2ggs_A 131 GLSKLLGETFALQ------DDSLIIRTSGIFRNK-----GFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLEL 199 (273)
T ss_dssp HHHHHHHHHHHCC------TTCEEEEECCCBSSS-----SHHHHHHHHHHTTCCEEEESCEECCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------CCeEEEecccccccc-----HHHHHHHHHHHcCCCEEeecCCCCceEHHHHHHHHHHHHhc
Confidence 9999999999864 678999999999821 2222333444455421 11367899999999999999987
Q ss_pred CCCCccEEEecCCCCHHHHHHHHHHhCCCCC-C--CCCC---ccCCCCccccchHHH-HhhCCcc--cchhhhH
Q 020747 244 PKASGRYLLAGSVAQHSDILKFLREHYPTLL-R--SGKL---EEKYQPTIKVSQERA-KSLGINF--TPWEVGV 308 (322)
Q Consensus 244 ~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~-~--~~~~---~~~~~~~~~~~~~k~-~~lg~~~--~~~~~~l 308 (322)
+. +|.|+++++.+|++|+++.+.+.+|... + +.+. .........+|++|+ +.|||+| +++++++
T Consensus 200 ~~-~g~~~i~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 200 RK-TGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp TC-CEEEECCCCCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred Cc-CCeEEECCCcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 64 6688877788999999999999987431 1 1111 122234678999999 7799998 6788875
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=258.10 Aligned_cols=234 Identities=19% Similarity=0.212 Sum_probs=187.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|||||||||||++|+++|+++|++|++++|+..... ..+++++.+|++|+++++++++++|+|||+||
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 72 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA----------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG 72 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC----------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc----------CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence 78999999999999999999999999999999765321 13578899999999999999999999999999
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
... ...+...+++|+.++.++++++++. ++++||++||. .+|+.... ..+++|+++..|. +.|+.+
T Consensus 73 ~~~---~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~-~~~~~~~~---~~~~~E~~~~~~~------~~Y~~s 138 (267)
T 3ay3_A 73 VSV---ERPWNDILQANIIGAYNLYEAARNL-GKPRIVFASSN-HTIGYYPR---TTRIDTEVPRRPD------SLYGLS 138 (267)
T ss_dssp CCS---CCCHHHHHHHTHHHHHHHHHHHHHT-TCCEEEEEEEG-GGSTTSBT---TSCBCTTSCCCCC------SHHHHH
T ss_pred CCC---CCCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCH-HHhCCCCC---CCCCCCCCCCCCC------ChHHHH
Confidence 752 3455788999999999999999987 88999999999 55544221 4678999887765 679999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCC-
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKAS- 247 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~- 247 (322)
|.++|.+++.++++++++++++||+.+|+... .. . ..++++|++|+|++++.+++++..+
T Consensus 139 K~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~------~~---------~----~~~~~~~~~dva~~~~~~~~~~~~~~ 199 (267)
T 3ay3_A 139 KCFGEDLASLYYHKFDIETLNIRIGSCFPKPK------DA---------R----MMATWLSVDDFMRLMKRAFVAPKLGC 199 (267)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEECBCSSSCC------SH---------H----HHHHBCCHHHHHHHHHHHHHSSCCCE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeceeecCCCC------CC---------C----eeeccccHHHHHHHHHHHHhCCCCCc
Confidence 99999999999888899999999999994211 00 0 3367899999999999999886543
Q ss_pred ccEEEecCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCccccchHHHHhhCCcc-cchhhhHHHHHH
Q 020747 248 GRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIE 313 (322)
Q Consensus 248 g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~ 313 (322)
+.|++.++. .....|..+++.+||+| ++++++++++.+
T Consensus 200 ~~~~~~~~~----------------------------~~~~~d~~~~~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 200 TVVYGASAN----------------------------TESWWDNDKSAFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp EEEEECCSC----------------------------SSCCBCCGGGGGGCCCCCCCGGGGHHHHHH
T ss_pred eeEecCCCc----------------------------cccccCHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 355543210 11234555557799999 999999998875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=274.18 Aligned_cols=255 Identities=17% Similarity=0.154 Sum_probs=191.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC---CCeEEEEEeCCCCcCh-hhhhhccC-------------CCCcEEEEEccCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR---GYTVKATVRDPNSPKT-EHLRELDG-------------ATERLHLFKANLL 68 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~-~~~~~~~~-------------~~~~~~~~~~Dl~ 68 (322)
.++|+|||||||||||++|+++|+++ |++|++++|+.+.... ..+.+... ...+++++.+|++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 45789999999999999999999999 9999999998654311 11111111 1257999999998
Q ss_pred ------CccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCC
Q 020747 69 ------EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 69 ------~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
|.+.++.+++++|+|||+||.... .++...+++|+.++.+++++|.+. ++++|||+||. ++|+...
T Consensus 151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~---~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~~V~iSS~-~v~~~~~--- 222 (478)
T 4dqv_A 151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA---FPYHELFGPNVAGTAELIRIALTT-KLKPFTYVSTA-DVGAAIE--- 222 (478)
T ss_dssp SGGGGCCHHHHHHHHHHCCEEEECCSSCSB---SSCCEEHHHHHHHHHHHHHHHTSS-SCCCEEEEEEG-GGGTTSC---
T ss_pred CcccCCCHHHHHHHHcCCCEEEECccccCC---cCHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeeh-hhcCccC---
Confidence 445788888999999999998654 455789999999999999999997 88999999998 6666543
Q ss_pred CCccccCCCCCCcccc-----cccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCC-CC---ccHHHHHH
Q 020747 143 PDVVIDETWFSNPVLC-----KENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI-LN---FGAEVILN 213 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~-~~---~~~~~~~~ 213 (322)
..+++|+.+..+..+ ....+.|+.||.++|.+++.++++.|++++++|||+|||+..... .+ ....++..
T Consensus 223 -~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~ 301 (478)
T 4dqv_A 223 -PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS 301 (478)
T ss_dssp -TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHH
T ss_pred -CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHH
Confidence 567788776544311 111244999999999999999988899999999999999865221 11 22233333
Q ss_pred HH-cCC-CCC-----------CCCCcceeHHHHHHHHHHhhcC----CC-CCccEEEe-cCC--CCHHHHHHHHHHh
Q 020747 214 LI-NGD-QSF-----------AFPYIFVEIRDVVYAHIRALEV----PK-ASGRYLLA-GSV--AQHSDILKFLREH 269 (322)
Q Consensus 214 ~~-~g~-~~~-----------~~~~~~i~~~D~a~~~~~~~~~----~~-~~g~~~~~-~~~--~~~~e~~~~i~~~ 269 (322)
.. .|. +.. ...++++|++|+|++++.++.+ +. .+++|+++ ++. ++++|+++.+.+.
T Consensus 302 ~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~ 378 (478)
T 4dqv_A 302 LMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378 (478)
T ss_dssp HHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred HHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence 22 233 221 1467999999999999999875 33 34488877 455 9999999999996
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=278.98 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=214.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhh----hhc------cCCCCcEEEEEccCCCccchHHh
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHL----REL------DGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~----~~~------~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
+|+|||||||||||++|+++|+++|++|++++|+...... ..+ ... .....+++++.+|+++++.+. +
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~ 228 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-L 228 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-C
T ss_pred CCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-C
Confidence 5799999999999999999999999999999998763211 000 000 011357999999999988888 7
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCC-CCCCCccccCCCCCCc
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNET-PMTPDVVIDETWFSNP 155 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~-~~~~~~~~~E~~~~~~ 155 (322)
..++|+|||+||.... ..++...+++|+.++.+++++|.+ ++++|||+||.++ |... ......+++|+++..+
T Consensus 229 ~~~~D~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v--G~~~~~~~~~~~~~E~~~~~~ 302 (508)
T 4f6l_B 229 PENMDTIIHAGARTDH--FGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV--GTYFDIDTEDVTFSEADVYKG 302 (508)
T ss_dssp SSCCSEEEECCCC----------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT--TSEECTTCSCCEECTTCSCSS
T ss_pred ccCCCEEEECCceecC--CCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh--ccCCccCCcCccccccccccc
Confidence 7899999999997643 345578899999999999999988 5689999999844 3211 1112568899887443
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC------CccHHHHHHHHcCC--CCC-C-CCC
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL------NFGAEVILNLINGD--QSF-A-FPY 225 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~------~~~~~~~~~~~~g~--~~~-~-~~~ 225 (322)
. .+.+.|+.+|.++|++++.+++ .|++++++||+.|||+...... .....++.....+. +.. + +.+
T Consensus 303 ~---~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~ 378 (508)
T 4f6l_B 303 Q---LLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPV 378 (508)
T ss_dssp B---CCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEE
T ss_pred c---cCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceE
Confidence 2 1236799999999999999764 6999999999999999865431 11344555555544 222 2 788
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCC--CCCc----------------cCCCCc
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRS--GKLE----------------EKYQPT 286 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~--~~~~----------------~~~~~~ 286 (322)
+|+|++|+|++++.++.++..+++|+++ ++.+++.|+++.+++.. ...++ .|.. ......
T Consensus 379 ~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~-~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~ 457 (508)
T 4f6l_B 379 DFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE-IELVSDESFNEILQKQDMYETIGLTSVDREQQL 457 (508)
T ss_dssp ECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC-CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSEE
T ss_pred EEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC-CcccCHHHHHHHHHhcCCccchhcccccccCcc
Confidence 9999999999999999887656688776 57899999999999765 21111 1111 012234
Q ss_pred cccchHHH----HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 287 IKVSQERA----KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 287 ~~~~~~k~----~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
..+|+.+. +.+||.+ ..-++.+++++++++.
T Consensus 458 ~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~ 493 (508)
T 4f6l_B 458 AMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKT 493 (508)
T ss_dssp CEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 55665543 5579998 5456678888888875
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=266.35 Aligned_cols=234 Identities=16% Similarity=0.225 Sum_probs=185.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHC-CC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQR-GY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
++++|+|||||||||||++++++|+++ |+ +|++++|++.+.. .....+. ..++.++.+|++|+++++++++++|+
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~-~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~D~ 94 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS-EMAMEFN--DPRMRFFIGDVRDLERLNYALEGVDI 94 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH-HHHHHHC--CTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH-HHHHHhc--CCCEEEEECCCCCHHHHHHHHhcCCE
Confidence 466799999999999999999999999 97 9999999753321 1111121 25789999999999999999999999
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
|||+||.... .....+.+.+++|+.|+.+++++|.+. ++++||++||..++.+ .
T Consensus 95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~~~p--~---------------------- 149 (344)
T 2gn4_A 95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDKAANP--I---------------------- 149 (344)
T ss_dssp EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSSC--C----------------------
T ss_pred EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCccCCC--c----------------------
Confidence 9999997532 112345689999999999999999998 8999999999844321 1
Q ss_pred chhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CC--C-C-CCCcceeHHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QS--F-A-FPYIFVEIRDV 233 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~--~-~-~~~~~i~~~D~ 233 (322)
++|+.||+++|.+++.++.+ .|++++++|||+|||+.. ...+.++..+..|. ++ . + ..++|+|++|+
T Consensus 150 -~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~----~~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~ 224 (344)
T 2gn4_A 150 -NLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG----SVVPFFKKLVQNKASEIPITDIRMTRFWITLDEG 224 (344)
T ss_dssp -SHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT----SHHHHHHHHHHHTCCCEEESCTTCEEEEECHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC----CHHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHH
Confidence 56999999999999988764 589999999999999873 23344455555554 22 2 2 66889999999
Q ss_pred HHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCC
Q 020747 234 VYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 271 (322)
Q Consensus 234 a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~ 271 (322)
|++++.+++++..+.+|++.++.+++.|+++.+.+..+
T Consensus 225 a~~v~~~l~~~~~g~~~~~~~~~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 225 VSFVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHHHHHCCSSCEEEECCCEEEHHHHHHHHCTTCC
T ss_pred HHHHHHHHhhccCCCEEecCCCcEEHHHHHHHHHHhCC
Confidence 99999999876544488888778999999999987654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=252.69 Aligned_cols=213 Identities=17% Similarity=0.194 Sum_probs=177.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|+||||||+||||++++++|+++|++|++++|+..... ..+++++.+|++|+++++++++++|+|||+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~ 71 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----------GPNEECVQCDLADANAVNAMVAGCDGIVHL 71 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence 3589999999999999999999999999999999875432 356899999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
||.. ...++...+++|+.|+.++++++++. ++++||++||..++..... ..+++|+.+..+. +.|+
T Consensus 72 Ag~~---~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~g~~~~----~~~~~e~~~~~~~------~~Y~ 137 (267)
T 3rft_A 72 GGIS---VEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQ----TERLGPDVPARPD------GLYG 137 (267)
T ss_dssp CSCC---SCCCHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGTTSBT----TSCBCTTSCCCCC------SHHH
T ss_pred CCCc---CcCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcchHHhCCCCC----CCCCCCCCCCCCC------ChHH
Confidence 9973 34567889999999999999999987 8899999999955533332 5678898877766 6799
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCC
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKA 246 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~ 246 (322)
.||.++|.+++.++++++++++++||+.|+|+..... ..++|+|++|+++++..+++.+..
T Consensus 138 ~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~~~-------------------~~~~~~~~~d~a~~~~~~~~~~~~ 198 (267)
T 3rft_A 138 VSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYR-------------------MLSTWFSHDDFVSLIEAVFRAPVL 198 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCSTT-------------------HHHHBCCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCCCC-------------------ceeeEEcHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999743211 335678999999999999998765
Q ss_pred Cc-cE-EEecCCCCHHHH
Q 020747 247 SG-RY-LLAGSVAQHSDI 262 (322)
Q Consensus 247 ~g-~~-~~~~~~~~~~e~ 262 (322)
++ ++ +++++..++.++
T Consensus 199 ~~~~~~~~s~~~~~~~~~ 216 (267)
T 3rft_A 199 GCPVVWGASANDAGWWDN 216 (267)
T ss_dssp CSCEEEECCCCTTCCBCC
T ss_pred CceEEEEeCCCCCCcccC
Confidence 54 44 555665555443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=244.06 Aligned_cols=208 Identities=16% Similarity=0.175 Sum_probs=168.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCC-ccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE-EGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~d~vih~A 87 (322)
|+|+|||||||||++++++|+++|++|++++|+.++... ..+++++++|++| +++++++++++|+|||+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ---------YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC---------CTTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh---------cCCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 479999999999999999999999999999998644321 1568999999999 999999999999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
|... ...+++|+.++.+++++|++. ++++||++||.++.. ..+.+| .++.+ .+.|+.
T Consensus 72 g~~~-------~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~--------~~~~~e-~~~~~------~~~Y~~ 128 (219)
T 3dqp_A 72 GSGG-------KSLLKVDLYGAVKLMQAAEKA-EVKRFILLSTIFSLQ--------PEKWIG-AGFDA------LKDYYI 128 (219)
T ss_dssp CCTT-------SSCCCCCCHHHHHHHHHHHHT-TCCEEEEECCTTTTC--------GGGCCS-HHHHH------THHHHH
T ss_pred cCCC-------CCcEeEeHHHHHHHHHHHHHh-CCCEEEEECcccccC--------CCcccc-ccccc------ccHHHH
Confidence 8753 247788999999999999997 889999999984432 223334 22222 267999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCC
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKAS 247 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~ 247 (322)
+|.++|++++ +..+++++++||+.+||+....... .+. ..+++++++|+|++++.+++++...
T Consensus 129 sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~~----------~~~----~~~~~i~~~Dva~~i~~~l~~~~~~ 191 (219)
T 3dqp_A 129 AKHFADLYLT---KETNLDYTIIQPGALTEEEATGLID----------IND----EVSASNTIGDVADTIKELVMTDHSI 191 (219)
T ss_dssp HHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSEEE----------ESS----SCCCCEEHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHH---hccCCcEEEEeCceEecCCCCCccc----------cCC----CcCCcccHHHHHHHHHHHHhCcccc
Confidence 9999999986 4679999999999999986543211 122 7789999999999999999987654
Q ss_pred c-cEEEecCCCCHHHHHHH
Q 020747 248 G-RYLLAGSVAQHSDILKF 265 (322)
Q Consensus 248 g-~~~~~~~~~~~~e~~~~ 265 (322)
| .|+++++..+++|+.+.
T Consensus 192 g~~~~i~~g~~~~~e~~~~ 210 (219)
T 3dqp_A 192 GKVISMHNGKTAIKEALES 210 (219)
T ss_dssp TEEEEEEECSEEHHHHHHT
T ss_pred CcEEEeCCCCccHHHHHHH
Confidence 5 88887777999998764
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=251.00 Aligned_cols=251 Identities=15% Similarity=0.148 Sum_probs=190.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
|+|+|||||||||++++++|+++ |++|++++|+.... ..+. ..+++++.+|++|++++.++++++|+|||+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~l~-----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 73 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA--STLA-----DQGVEVRHGDYNQPESLQKAFAGVSKLLFI 73 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT--HHHH-----HTTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH--hHHh-----hcCCeEEEeccCCHHHHHHHHhcCCEEEEc
Confidence 47999999999999999999999 99999999976543 1121 135789999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
|+... .. ++|+.++.+++++|++. ++++||++||.. .+..+ .+|+
T Consensus 74 a~~~~-------~~--~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~-~~~~~------------------------~~y~ 118 (287)
T 2jl1_A 74 SGPHY-------DN--TLLIVQHANVVKAARDA-GVKHIAYTGYAF-AEESI------------------------IPLA 118 (287)
T ss_dssp CCCCS-------CH--HHHHHHHHHHHHHHHHT-TCSEEEEEEETT-GGGCC------------------------STHH
T ss_pred CCCCc-------Cc--hHHHHHHHHHHHHHHHc-CCCEEEEECCCC-CCCCC------------------------CchH
Confidence 98521 11 67999999999999997 899999999984 33211 2499
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHH-cCCCCC--C-CCCcceeHHHHHHHHHHhhc
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI-NGDQSF--A-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~-~g~~~~--~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
.+|.++|++++ +++++++++||+.++|+... .. +...+ .+...+ + +.++|+|++|+|++++.+++
T Consensus 119 ~~K~~~E~~~~----~~~~~~~ilrp~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 187 (287)
T 2jl1_A 119 HVHLATEYAIR----TTNIPYTFLRNALYTDFFVN---EG----LRASTESGAIVTNAGSGIVNSVTRNELALAAATVLT 187 (287)
T ss_dssp HHHHHHHHHHH----HTTCCEEEEEECCBHHHHSS---GG----GHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HcCCCeEEEECCEeccccch---hh----HHHHhhCCceeccCCCCccCccCHHHHHHHHHHHhc
Confidence 99999999885 46999999999998886522 11 12222 233212 2 77899999999999999998
Q ss_pred CCCCCc-cEEEec-CCCCHHHHHHHHHHhCCCC----CCCCCCcc------CC----------------CCccccchHHH
Q 020747 243 VPKASG-RYLLAG-SVAQHSDILKFLREHYPTL----LRSGKLEE------KY----------------QPTIKVSQERA 294 (322)
Q Consensus 243 ~~~~~g-~~~~~~-~~~~~~e~~~~i~~~~~~~----~~~~~~~~------~~----------------~~~~~~~~~k~ 294 (322)
++...| .|++++ +.+|++|+++.+.+.+|.. .+|..... .. .....+|++|+
T Consensus 188 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
T 2jl1_A 188 EEGHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDL 267 (287)
T ss_dssp SSSCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHH
T ss_pred CCCCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHH
Confidence 764444 787775 6899999999999998642 12211000 00 12346678999
Q ss_pred -HhhCCcccchhhhHHHHHH
Q 020747 295 -KSLGINFTPWEVGVRGCIE 313 (322)
Q Consensus 295 -~~lg~~~~~~~~~l~~~~~ 313 (322)
+.|| .+++++|+++++++
T Consensus 268 ~~~lG-~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 268 QKLIG-SLTPLKETVKQALK 286 (287)
T ss_dssp HHHHS-SCCCHHHHHHHHHT
T ss_pred HHHhC-CCCCHHHHHHHHhc
Confidence 7799 44999999998875
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=240.78 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=168.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcE-EEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL-HLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++|+|+|||||||||++++++|+++|++|++++|+.+.. +.+.. .++ +++.+|++ +++.++++++|+||
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~--~~~~~-----~~~~~~~~~Dl~--~~~~~~~~~~D~vi 89 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG--PELRE-----RGASDIVVANLE--EDFSHAFASIDAVV 89 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHH-----TTCSEEEECCTT--SCCGGGGTTCSEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH--HHHHh-----CCCceEEEcccH--HHHHHHHcCCCEEE
Confidence 5679999999999999999999999999999999986442 11211 257 89999999 78888999999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
|+||... ...+...+++|+.++.+++++|++. ++++||++||..+..+ |..+ .+ .+.
T Consensus 90 ~~ag~~~---~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~------------~~~~-~~------~~~ 146 (236)
T 3e8x_A 90 FAAGSGP---HTGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDP------------DQGP-MN------MRH 146 (236)
T ss_dssp ECCCCCT---TSCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCG------------GGSC-GG------GHH
T ss_pred ECCCCCC---CCCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCC------------CCCh-hh------hhh
Confidence 9999754 2456789999999999999999998 8899999999632211 1111 11 267
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
|+.+|.++|++++ +.|++++++|||.++|+......... ..+. +.++++|++|+|++++.+++++
T Consensus 147 Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~~~~~~-------~~~~----~~~~~i~~~Dva~~~~~~~~~~ 211 (236)
T 3e8x_A 147 YLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTGKVTVS-------PHFS----EITRSITRHDVAKVIAELVDQQ 211 (236)
T ss_dssp HHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCSEEEEE-------SSCS----CCCCCEEHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCCeEEec-------cCCC----cccCcEeHHHHHHHHHHHhcCc
Confidence 9999999999886 67999999999999998643321110 0111 5689999999999999999987
Q ss_pred CCCc-cEEEecCCCCHHHHHHHHH
Q 020747 245 KASG-RYLLAGSVAQHSDILKFLR 267 (322)
Q Consensus 245 ~~~g-~~~~~~~~~~~~e~~~~i~ 267 (322)
...| .|+++++..+++|+++.++
T Consensus 212 ~~~g~~~~v~~~~~~~~e~~~~i~ 235 (236)
T 3e8x_A 212 HTIGKTFEVLNGDTPIAKVVEQLG 235 (236)
T ss_dssp GGTTEEEEEEECSEEHHHHHHTC-
T ss_pred cccCCeEEEeCCCcCHHHHHHHhc
Confidence 5545 7888766899999998765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=250.62 Aligned_cols=251 Identities=16% Similarity=0.134 Sum_probs=184.5
Q ss_pred EEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|||||||||++++++|+++ |++|++++|++++.. .+.. .+++++.+|++|+++++++++++|+|||+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~~~-----~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 73 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ--ALAA-----QGITVRQADYGDEAALTSALQGVEKLLLIS 73 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH--HHHH-----TTCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh--hhhc-----CCCeEEEcCCCCHHHHHHHHhCCCEEEEeC
Confidence 4899999999999999999998 999999999865431 1111 357889999999999999999999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
+... ..|+.++.+++++|++. ++++||++||.. .+..+ ..|+.
T Consensus 74 ~~~~-----------~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~-~~~~~------------------------~~y~~ 116 (286)
T 2zcu_A 74 SSEV-----------GQRAPQHRNVINAAKAA-GVKFIAYTSLLH-ADTSP------------------------LGLAD 116 (286)
T ss_dssp -------------------CHHHHHHHHHHHH-TCCEEEEEEETT-TTTCC------------------------STTHH
T ss_pred CCCc-----------hHHHHHHHHHHHHHHHc-CCCEEEEECCCC-CCCCc------------------------chhHH
Confidence 8521 14788999999999998 899999999983 33110 24999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHc-CCCCC--C-CCCcceeHHHHHHHHHHhhcC
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN-GDQSF--A-FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~-g~~~~--~-~~~~~i~~~D~a~~~~~~~~~ 243 (322)
+|.++|+++++ .+++++++||+.++++.. . .+..... +...+ + +.++++|++|+|++++.++++
T Consensus 117 sK~~~e~~~~~----~~~~~~ilrp~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~ 184 (286)
T 2zcu_A 117 EHIETEKMLAD----SGIVYTLLRNGWYSENYL----A----SAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISE 184 (286)
T ss_dssp HHHHHHHHHHH----HCSEEEEEEECCBHHHHH----T----THHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH----cCCCeEEEeChHHhhhhH----H----HhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhcC
Confidence 99999999863 599999999987766532 1 1222222 22112 2 778999999999999999987
Q ss_pred CCC-CccEEEec-CCCCHHHHHHHHHHhCCCC----CCCCCCcc------CC----------------CCccccchHHH-
Q 020747 244 PKA-SGRYLLAG-SVAQHSDILKFLREHYPTL----LRSGKLEE------KY----------------QPTIKVSQERA- 294 (322)
Q Consensus 244 ~~~-~g~~~~~~-~~~~~~e~~~~i~~~~~~~----~~~~~~~~------~~----------------~~~~~~~~~k~- 294 (322)
+.. ++.|++++ +.+|++|+++.+.+.+|.. ++|.+... .. ......|++|+
T Consensus 185 ~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (286)
T 2zcu_A 185 AGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLS 264 (286)
T ss_dssp SSCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHH
T ss_pred CCCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHH
Confidence 543 44887775 5899999999999998642 22221100 00 11245678899
Q ss_pred HhhCCcccchhhhHHHHHHHHH
Q 020747 295 KSLGINFTPWEVGVRGCIESLM 316 (322)
Q Consensus 295 ~~lg~~~~~~~~~l~~~~~~~~ 316 (322)
+.|||.+++++|+|+++++|+.
T Consensus 265 ~~lg~~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 265 KLIGHPTTTLAESVSHLFNVNN 286 (286)
T ss_dssp HHHTSCCCCHHHHHHGGGC---
T ss_pred HHhCcCCCCHHHHHHHHHhhcC
Confidence 7799866999999999998863
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=250.19 Aligned_cols=240 Identities=18% Similarity=0.136 Sum_probs=186.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|||||||||||++|+++|+++|+ +|++++|+ +|+++++++++++|+|||+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------------~d~~~l~~~~~~~d~Vih~a 54 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------------TKEEELESALLKADFIVHLA 54 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------------CCHHHHHHHHHHCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------------CCHHHHHHHhccCCEEEECC
Confidence 4799999999999999999999998 77776553 56778888999999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
|.... .++...+++|+.++.+++++|++. +++ +||++||. .+++. +.|+
T Consensus 55 ~~~~~---~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~-~~~~~-------------------------~~Y~ 104 (369)
T 3st7_A 55 GVNRP---EHDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSI-QATQD-------------------------NPYG 104 (369)
T ss_dssp CSBCT---TCSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEG-GGGSC-------------------------SHHH
T ss_pred cCCCC---CCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCch-hhcCC-------------------------CCch
Confidence 97543 344678899999999999999997 777 99999999 55441 5599
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC-ccHHHHHHHHcCCC--CC-C-CCCcceeHHHHHHHHHHhh
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN-FGAEVILNLINGDQ--SF-A-FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~--~~-~-~~~~~i~~~D~a~~~~~~~ 241 (322)
.+|.++|++++.++++++++++++||+++||+...+... ....++..+..+.+ +. + +.++++|++|+|++++.++
T Consensus 105 ~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l 184 (369)
T 3st7_A 105 ESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAI 184 (369)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHH
Confidence 999999999999999899999999999999998765433 34555666666662 22 2 7789999999999999999
Q ss_pred cCCCC--CccEEEe-cCCCCHHHHHHHHHHhCCCC-CCCCCCccCCCCccccchHHH-HhhCCcc-cchhhhHH
Q 020747 242 EVPKA--SGRYLLA-GSVAQHSDILKFLREHYPTL-LRSGKLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVR 309 (322)
Q Consensus 242 ~~~~~--~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~ 309 (322)
+++.. ++.|+++ ++.+|+.|+++.+++..+.. ++... .. ......... ..+||.| .+++++++
T Consensus 185 ~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~--~~---~~~~~~~l~~~~l~~~p~~~~~~~l~ 253 (369)
T 3st7_A 185 EGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLP--KL---DNLFEKDLYSTYLSYLPSTDFSYPLL 253 (369)
T ss_dssp HTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCC--CT---TSHHHHHHHHHHHHTSCTTCSCCCCC
T ss_pred hCCcccCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccC--CC---CCHHHHHHHHHHhcccCCcceeechh
Confidence 98766 5688766 57899999999999987532 11110 00 111111233 3478888 76665543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=246.91 Aligned_cols=269 Identities=13% Similarity=0.105 Sum_probs=186.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC--CCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD--GCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 81 (322)
|++|+|+|||||||||++|+++|+++|++|++++|+.+.... ..+..+. ..+++++.+|++|++++.++++ ++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE--DKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH--hCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 445799999999999999999999999999999998633211 1111221 2468999999999999999999 999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
+|||+|+.. |+.++.+++++|++. + +++||+ |+. + .+.+|+.+..|.
T Consensus 86 ~Vi~~a~~~--------------n~~~~~~l~~aa~~~-g~v~~~v~-S~~----g--------~~~~e~~~~~p~---- 133 (346)
T 3i6i_A 86 IVVSTVGGE--------------SILDQIALVKAMKAV-GTIKRFLP-SEF----G--------HDVNRADPVEPG---- 133 (346)
T ss_dssp EEEECCCGG--------------GGGGHHHHHHHHHHH-CCCSEEEC-SCC----S--------SCTTTCCCCTTH----
T ss_pred EEEECCchh--------------hHHHHHHHHHHHHHc-CCceEEee-ccc----C--------CCCCccCcCCCc----
Confidence 999999862 788899999999998 7 999886 432 2 223455544444
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVY 235 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~ 235 (322)
+.|+.+|..+|+++++ .|++++++|||.++|........ .......+. .+++ +.++|+|++|+|+
T Consensus 134 --~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~~----~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~ 203 (346)
T 3i6i_A 134 --LNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNIH----PSEVLPPTDFFQIYGDGNVKAYFVAGTDIGK 203 (346)
T ss_dssp --HHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC---------CCCCSSCEEEETTSCCCEEEECHHHHHH
T ss_pred --chHHHHHHHHHHHHHH----cCCCEEEEEecccccccCccccc----cccccCCCceEEEccCCCceEEecCHHHHHH
Confidence 6799999999998864 69999999999999976432111 111111222 2222 6899999999999
Q ss_pred HHHHhhcCCCC-CccEEEe--cCCCCHHHHHHHHHHhCCCCC----CCCCCc----cC-----------------CCCcc
Q 020747 236 AHIRALEVPKA-SGRYLLA--GSVAQHSDILKFLREHYPTLL----RSGKLE----EK-----------------YQPTI 287 (322)
Q Consensus 236 ~~~~~~~~~~~-~g~~~~~--~~~~~~~e~~~~i~~~~~~~~----~~~~~~----~~-----------------~~~~~ 287 (322)
+++.++.++.. ++.|++. ++.+|+.|+++.+++.+|... ++.... .. .....
T Consensus 204 ~~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 283 (346)
T 3i6i_A 204 FTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQV 283 (346)
T ss_dssp HHHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCc
Confidence 99999998754 4466654 579999999999999986421 111100 00 00001
Q ss_pred ccch-----HHH-Hh-hCCcccchhhhHHHHHHHHHHc
Q 020747 288 KVSQ-----ERA-KS-LGINFTPWEVGVRGCIESLMEK 318 (322)
Q Consensus 288 ~~~~-----~k~-~~-lg~~~~~~~~~l~~~~~~~~~~ 318 (322)
.++. .++ +. -++++++++|.++++++|++.+
T Consensus 284 ~~~~~~~~~~~~~~~~p~~~~t~~~e~l~~~~~~~~~~ 321 (346)
T 3i6i_A 284 NFSIDGPEDVEVTTLYPEDSFRTVEECFGEYIVKMEEK 321 (346)
T ss_dssp SSCCCSTTEEEHHHHSTTCCCCCHHHHHHHHHCC----
T ss_pred ccccCCCCcccHHHhCCCCCcCcHHHHHHHHHHHhhcc
Confidence 1122 123 22 3678889999999999988754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=225.92 Aligned_cols=210 Identities=16% Similarity=0.131 Sum_probs=160.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+|||||||||++++++|+++|++|++++|+..+. ..+. ..+++++.+|++|+++ +.++++|+|||+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-----~~~~--~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-----ADRL--GATVATLVKEPLVLTE--ADLDSVDAVVDALS 71 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-----HHHT--CTTSEEEECCGGGCCH--HHHTTCSEEEECCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc-----cccc--CCCceEEecccccccH--hhcccCCEEEECCc
Confidence 4799999999999999999999999999999975332 2221 2468999999999887 78899999999999
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.... ....+.|+.++.+++++|++. + ++||++||..++++.... ...+.+|+..+.|. +.|+.+
T Consensus 72 ~~~~------~~~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~~--~~~~~~~~~~~~~~------~~y~~s 135 (224)
T 3h2s_A 72 VPWG------SGRGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGAD--HPMILDFPESAASQ------PWYDGA 135 (224)
T ss_dssp CCTT------SSCTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTCS--SCGGGGCCGGGGGS------TTHHHH
T ss_pred cCCC------cchhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCCC--ccccccCCCCCccc------hhhHHH
Confidence 7511 123578999999999999998 7 999999998677654431 02345555444333 669999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-CCCcceeHHHHHHHHHHhhcCCC
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
|..+|.+ ..+.++.+++++++||+.+||+..... . ..+. ...+ ..++++|++|+|++++.+++++.
T Consensus 136 K~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~--~--------~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~ 204 (224)
T 3h2s_A 136 LYQYYEY-QFLQMNANVNWIGISPSEAFPSGPATS--Y--------VAGKDTLLVGEDGQSHITTGNMALAILDQLEHPT 204 (224)
T ss_dssp HHHHHHH-HHHTTCTTSCEEEEEECSBCCCCCCCC--E--------EEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHH-HHHHhcCCCcEEEEcCccccCCCcccC--c--------eecccccccCCCCCceEeHHHHHHHHHHHhcCcc
Confidence 9999954 455556799999999999999853321 1 0111 1223 66899999999999999999987
Q ss_pred CCc-cEEEec
Q 020747 246 ASG-RYLLAG 254 (322)
Q Consensus 246 ~~g-~~~~~~ 254 (322)
..| +|++.+
T Consensus 205 ~~g~~~~~~~ 214 (224)
T 3h2s_A 205 AIRDRIVVRD 214 (224)
T ss_dssp CTTSEEEEEE
T ss_pred ccCCEEEEec
Confidence 655 786664
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-32 Score=225.82 Aligned_cols=209 Identities=15% Similarity=0.206 Sum_probs=143.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+|||||||||++++++|+++|++|++++|+++. +..+. .+++++.+|++|+++ +.+.++|+|||+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~-----~~~~~---~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK-----ITQTH---KDINILQKDIFDLTL--SDLSDQNVVVDAYG 70 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH-----HHHHC---SSSEEEECCGGGCCH--HHHTTCSEEEECCC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh-----hhhcc---CCCeEEeccccChhh--hhhcCCCEEEECCc
Confidence 479999999999999999999999999999998633 22221 458999999999887 78899999999998
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.... ..+.|+.++.+++++|++. +++++|++||..++++.+. ..+..|+.+..|. +.|+.+
T Consensus 71 ~~~~--------~~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~----~~~~~~~~~~~~~------~~y~~~ 131 (221)
T 3ew7_A 71 ISPD--------EAEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDED----GNTLLESKGLREA------PYYPTA 131 (221)
T ss_dssp SSTT--------TTTSHHHHHHHHHHHHCSC-CSSEEEEECCCC-----------------------C------CCSCCH
T ss_pred CCcc--------ccchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCCC----CccccccCCCCCH------HHHHHH
Confidence 7321 2466999999999999997 7899999999977776553 3456666655554 569999
Q ss_pred HHHHHHHHHHHHH-HcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCcceeHHHHHHHHHHhhcCCC
Q 020747 169 KTLAEEAAWKFAK-ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 169 K~~~e~~~~~~~~-~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
|..+|.+ ..+.+ ..+++++++||+.+||+..... . + . ..+. .... ...+++|++|+|++++.+++++.
T Consensus 132 k~~~e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~--~----~-~-~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~ 202 (221)
T 3ew7_A 132 RAQAKQL-EHLKSHQAEFSWTYISPSAMFEPGERTG--D----Y-Q-IGKDHLLFGSDGNSFISMEDYAIAVLDEIERPN 202 (221)
T ss_dssp HHHHHHH-HHHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHHSCS
T ss_pred HHHHHHH-HHHHhhccCccEEEEeCcceecCCCccC--c----e-E-eccccceecCCCCceEeHHHHHHHHHHHHhCcc
Confidence 9999997 33443 6799999999999999842211 0 0 0 1111 1111 34579999999999999999987
Q ss_pred CCc-cEEEecC
Q 020747 246 ASG-RYLLAGS 255 (322)
Q Consensus 246 ~~g-~~~~~~~ 255 (322)
..| .|++.+.
T Consensus 203 ~~g~~~~~~~~ 213 (221)
T 3ew7_A 203 HLNEHFTVAGK 213 (221)
T ss_dssp CTTSEEECCC-
T ss_pred ccCCEEEECCC
Confidence 655 7877653
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=228.67 Aligned_cols=228 Identities=19% Similarity=0.179 Sum_probs=169.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+++|+|+||||+||||++++++|+++ |++|++++|++.+ ...+ ..++.++.+|++|+++++++++++|+|
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~-----~~~~---~~~~~~~~~D~~d~~~~~~~~~~~d~v 73 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG-----KEKI---GGEADVFIGDITDADSINPAFQGIDAL 73 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH-----HHHT---TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc-----hhhc---CCCeeEEEecCCCHHHHHHHHcCCCEE
Confidence 34589999999999999999999999 8999999997532 1222 235678999999999999999999999
Q ss_pred EEcccCcccC-----------C---CCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 84 FHTASPVIFL-----------S---DNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 84 ih~A~~~~~~-----------~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
||+||..... . ...+...+++|+.++.++++++++. ++++||++||..+. ...
T Consensus 74 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~-~~~----------- 140 (253)
T 1xq6_A 74 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSMGGT-NPD----------- 140 (253)
T ss_dssp EECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEETTTT-CTT-----------
T ss_pred EEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEEEEcCccCC-CCC-----------
Confidence 9999965321 0 1112346799999999999999998 78999999998432 111
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCCCCCcc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFAFPYIF 227 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~ 227 (322)
.+..+ +. .+.|+.+|.++|.+++ +.+++++++|||.+||+..... ... .+. .++....++
T Consensus 141 -~~~~~-~~---~~~y~~sK~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~-~~~--------~~~~~~~~~~~~~~ 202 (253)
T 1xq6_A 141 -HPLNK-LG---NGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVR-ELL--------VGKDDELLQTDTKT 202 (253)
T ss_dssp -CGGGG-GG---GCCHHHHHHHHHHHHH----TSSSCEEEEEECEEECSCSSSS-CEE--------EESTTGGGGSSCCE
T ss_pred -Ccccc-cc---chhHHHHHHHHHHHHH----hCCCceEEEecceeecCCcchh-hhh--------ccCCcCCcCCCCcE
Confidence 01011 00 0248899999999875 4699999999999999874321 110 111 111134679
Q ss_pred eeHHHHHHHHHHhhcCCCCCc-cEEEec----CCCCHHHHHHHHHHhCCC
Q 020747 228 VEIRDVVYAHIRALEVPKASG-RYLLAG----SVAQHSDILKFLREHYPT 272 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~~~g-~~~~~~----~~~~~~e~~~~i~~~~~~ 272 (322)
+|++|+|++++.+++++...| .|++++ +.+|++|+++.+++.+|.
T Consensus 203 ~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 203 VPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred EcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999999999998865444 787664 258999999999988763
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-31 Score=230.53 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=179.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|+|||||||||++++++|+++ |++|++++|+++.... +. ..+++++.+|++|+++++++++++|+|||+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~-----~~--~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a 73 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD-----DW--RGKVSVRQLDYFNQESMVEAFKGMDTVVFIP 73 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG-----GG--BTTBEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH-----hh--hCCCEEEEcCCCCHHHHHHHHhCCCEEEEeC
Confidence 36999999999999999999998 9999999998754321 11 2468999999999999999999999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
+.... ...|+.++.+++++|++. ++++||++||... .. ..+ ..+..
T Consensus 74 ~~~~~---------~~~~~~~~~~l~~aa~~~-gv~~iv~~Ss~~~----~~----~~~----------------~~~~~ 119 (289)
T 3e48_A 74 SIIHP---------SFKRIPEVENLVYAAKQS-GVAHIIFIGYYAD----QH----NNP----------------FHMSP 119 (289)
T ss_dssp CCCCS---------HHHHHHHHHHHHHHHHHT-TCCEEEEEEESCC----ST----TCC----------------STTHH
T ss_pred CCCcc---------chhhHHHHHHHHHHHHHc-CCCEEEEEcccCC----CC----CCC----------------Cccch
Confidence 86321 245899999999999998 8999999999621 11 000 00122
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC---CCCcceeHHHHHHHHHHhhcC
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA---FPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.+..+|..+ ++.|++++++||+.++|+.. ..+..+..+. ..++ +.++|+|++|+|++++.++.+
T Consensus 120 ~~~~~e~~~----~~~g~~~~ilrp~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~ 187 (289)
T 3e48_A 120 YFGYASRLL----STSGIDYTYVRMAMYMDPLK--------PYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKN 187 (289)
T ss_dssp HHHHHHHHH----HHHCCEEEEEEECEESTTHH--------HHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHHHC
T ss_pred hHHHHHHHH----HHcCCCEEEEeccccccccH--------HHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHHcC
Confidence 222344433 35699999999999999742 1223333333 3333 778899999999999999998
Q ss_pred CCC-CccEEEecCCCCHHHHHHHHHHhCCCC----CCCCCCc-----c--------------CCCCccccchHHH-HhhC
Q 020747 244 PKA-SGRYLLAGSVAQHSDILKFLREHYPTL----LRSGKLE-----E--------------KYQPTIKVSQERA-KSLG 298 (322)
Q Consensus 244 ~~~-~g~~~~~~~~~~~~e~~~~i~~~~~~~----~~~~~~~-----~--------------~~~~~~~~~~~k~-~~lg 298 (322)
+.. ++.|+++++.+|+.|+++.+.+.+|.. +++.... . ........+...+ +.+|
T Consensus 188 ~~~~g~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G 267 (289)
T 3e48_A 188 PDTWGKRYLLSGYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVN 267 (289)
T ss_dssp GGGTTCEEEECCEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHHS
T ss_pred CCcCCceEEeCCCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHhC
Confidence 765 448877788999999999999998642 1111000 0 0001122345566 7789
Q ss_pred CcccchhhhHHHHH
Q 020747 299 INFTPWEVGVRGCI 312 (322)
Q Consensus 299 ~~~~~~~~~l~~~~ 312 (322)
++|+++++.+++..
T Consensus 268 ~~p~~~~~~~~~~~ 281 (289)
T 3e48_A 268 DQPQTLQSFLQENI 281 (289)
T ss_dssp SCCCCHHHHHHC--
T ss_pred CCCCCHHHHHHHHH
Confidence 99999998776543
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=220.65 Aligned_cols=209 Identities=18% Similarity=0.081 Sum_probs=160.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|++|+|+||||+|+||++++++|+++|+ +|++++|++....... ..++.++.+|++|+++++++++++|+|
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~d~v 88 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-------YKNVNQEVVDFEKLDDYASAFQGHDVG 88 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-------GGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-------cCCceEEecCcCCHHHHHHHhcCCCEE
Confidence 3468999999999999999999999999 9999999875542211 135788999999999999999999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
||+||..... ..+...+++|+.++.++++++++. ++++||++||. +.++... +
T Consensus 89 i~~ag~~~~~--~~~~~~~~~n~~~~~~~~~~~~~~-~~~~iv~~SS~-~~~~~~~-----------------------~ 141 (242)
T 2bka_A 89 FCCLGTTRGK--AGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSK-GADKSSN-----------------------F 141 (242)
T ss_dssp EECCCCCHHH--HHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCT-TCCTTCS-----------------------S
T ss_pred EECCCccccc--CCcccceeeeHHHHHHHHHHHHHC-CCCEEEEEccC-cCCCCCc-----------------------c
Confidence 9999975331 234678999999999999999987 78999999998 4443211 4
Q ss_pred hHHHHHHHHHHHHHHHHHHcCc-cEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhc
Q 020747 164 WYSLAKTLAEEAAWKFAKENGI-DLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~-~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~ 242 (322)
.|+.+|.++|.+++. .++ +++++|||.+||+..... .............+.......+++++|+|++++.++.
T Consensus 142 ~Y~~sK~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~ 215 (242)
T 2bka_A 142 LYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR--PGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVV 215 (242)
T ss_dssp HHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS--HHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHh----cCCCCeEEEcCceecCCCCCCc--HHHHHHHHhhcccCccccCCcccCHHHHHHHHHHHHh
Confidence 599999999998863 478 699999999999975321 1111222222222211123468999999999999999
Q ss_pred CCCCCccEEEec
Q 020747 243 VPKASGRYLLAG 254 (322)
Q Consensus 243 ~~~~~g~~~~~~ 254 (322)
++...|.|++++
T Consensus 216 ~~~~~~~~~~~~ 227 (242)
T 2bka_A 216 RPRDKQMELLEN 227 (242)
T ss_dssp SCCCSSEEEEEH
T ss_pred CccccCeeEeeH
Confidence 887667776653
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=223.74 Aligned_cols=234 Identities=22% Similarity=0.196 Sum_probs=169.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +..... ..++.++++|++|+++++++++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALD-DLVAAY---PDRAEAISLDVTDGERIDVVAADVLARYG 78 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH-HHHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999999999764432 111111 3578999999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHH----hhcCCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSC----AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~----~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++ ++. +.++||++||..++.+.+.
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~~sS~~~~~~~~~---------- 147 (281)
T 3m1a_A 79 RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER-GSGSVVNISSFGGQLSFAG---------- 147 (281)
T ss_dssp CCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTCCCTT----------
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEcCccccCCCCC----------
Confidence 78999999997532 223455678999999966666555 444 5689999999866554322
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCC-------CccHHH---HHHHHc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPIL-------NFGAEV---ILNLIN 216 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~-------~~~~~~---~~~~~~ 216 (322)
.+.|+.||.+.|.+++.++.+ +|++++++|||.+.++...+.. ...... ......
T Consensus 148 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (281)
T 3m1a_A 148 ------------FSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQ 215 (281)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHh
Confidence 166999999999999999988 6999999999999988643321 111111 112222
Q ss_pred CCCCCCCCCcceeHHHHHHHHHHhhcCCCCCccEEEec-CCCCHHHHHHHHHHhC
Q 020747 217 GDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAG-SVAQHSDILKFLREHY 270 (322)
Q Consensus 217 g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~-~~~~~~e~~~~i~~~~ 270 (322)
+. ...++.+++|+|++++++++++..++.|++++ ......+....+.+.+
T Consensus 216 ~~----~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~ 266 (281)
T 3m1a_A 216 GS----DGSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAEL 266 (281)
T ss_dssp C---------CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHH
T ss_pred hc----cCCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHH
Confidence 22 55678899999999999999887777787764 4455666666665543
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=223.31 Aligned_cols=203 Identities=18% Similarity=0.124 Sum_probs=158.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++|+|+||||||+||++++++|+++|+ +|++++|++... ..+++.+.+|++|++++++++ +|+||
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~-----------~~~~~~~~~D~~~~~~~~~~~--~d~vi 70 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-----------HPRLDNPVGPLAELLPQLDGS--IDTAF 70 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-----------CTTEECCBSCHHHHGGGCCSC--CSEEE
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc-----------CCCceEEeccccCHHHHHHhh--hcEEE
Confidence 457999999999999999999999998 999999986541 246788899999999888887 99999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
|+||..... ..++...+++|+.++.++++++++. ++++||++||. ..++.+. +.
T Consensus 71 ~~a~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~-~~~~~~~-----------------------~~ 124 (215)
T 2a35_A 71 CCLGTTIKE-AGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSAL-GADAKSS-----------------------IF 124 (215)
T ss_dssp ECCCCCHHH-HSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCT-TCCTTCS-----------------------SH
T ss_pred ECeeecccc-CCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCc-ccCCCCc-----------------------cH
Confidence 999975432 2455788999999999999999997 88999999998 4443221 45
Q ss_pred HHHHHHHHHHHHHHHHHHcCcc-EEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-CCCcceeHHHHHHHHHHhhc
Q 020747 165 YSLAKTLAEEAAWKFAKENGID-LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~-~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
|+.+|.++|++++. .+++ ++++||+.+||+...... +..+......+. ..++++|++|+|++++.+++
T Consensus 125 y~~sK~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~ 194 (215)
T 2a35_A 125 YNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFRL------AEILAAPIARILPGKYHGIEACDLARALWRLAL 194 (215)
T ss_dssp HHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEEG------GGGTTCCCC----CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----cCCCeEEEEeCceeeCCCCcchH------HHHHHHhhhhccCCCcCcEeHHHHHHHHHHHHh
Confidence 99999999999863 5899 999999999999754211 111111111112 46789999999999999999
Q ss_pred CCCCCccEEEec-CCCCH
Q 020747 243 VPKASGRYLLAG-SVAQH 259 (322)
Q Consensus 243 ~~~~~g~~~~~~-~~~~~ 259 (322)
++. ++.|++++ +.+++
T Consensus 195 ~~~-~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 195 EEG-KGVRFVESDELRKL 211 (215)
T ss_dssp CCC-SEEEEEEHHHHHHH
T ss_pred cCC-CCceEEcHHHHHHh
Confidence 875 66887764 44443
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=221.85 Aligned_cols=240 Identities=17% Similarity=0.227 Sum_probs=176.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.. ..++.++.+|++|+++++++++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 91 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ-KVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKHG 91 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHH-HHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999988653221 11222221 2368999999999999888876
Q ss_pred CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 162 (278)
T 2bgk_A 92 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEG--------- 162 (278)
T ss_dssp CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTT---------
T ss_pred CCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCC---------
Confidence 78999999996431 112345678999999999999998764 24579999999855543220
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
+ ...|+.||.+.+.+++.++.+ +|++++++|||.++|+...............+....+. ...
T Consensus 163 ------~------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~ 228 (278)
T 2bgk_A 163 ------V------SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN--LKG 228 (278)
T ss_dssp ------S------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS--SCS
T ss_pred ------C------CcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcccc--ccc
Confidence 0 156999999999999999877 59999999999999997554322222222222221100 345
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCc-cEEEe-cCCCCHHHHHHHHHHhC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASG-RYLLA-GSVAQHSDILKFLREHY 270 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~-~~~~~~~e~~~~i~~~~ 270 (322)
.+++++|+|+++++++..+ ...| .+++. +...+++|+++.+.+.+
T Consensus 229 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 229 TLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 6899999999999999653 3456 56666 45789999999886543
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=221.17 Aligned_cols=223 Identities=19% Similarity=0.176 Sum_probs=166.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC-CCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD-PNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+|+||||+|+||++++++|+++|++|++++|+ .... .....++.....++.++.+|++|+++++++++
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANI-DETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTH-HHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998 4332 12222222224578999999999999988877
Q ss_pred --CCCEEEEcccC-ccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--c---cEEEEecchhhhc-cCCCCC
Q 020747 79 --GCDGVFHTASP-VIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--I---KRVVLTSSIGAML-LNETPM 141 (322)
Q Consensus 79 --~~d~vih~A~~-~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~---~~~i~~SS~~~~~-~~~~~~ 141 (322)
++|+|||+||. ... ...+.+...+++|+.++.++++++.+.+ + . ++||++||..+.. +.+.
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-- 160 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPG-- 160 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTT--
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCC--
Confidence 79999999996 221 2223456789999999999999876431 2 2 7899999985554 2211
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
.+.|+.||.+.+.+++.++.++ |++++++|||.++++..... .......+..+.
T Consensus 161 --------------------~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~ 217 (258)
T 3afn_B 161 --------------------AGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK---TQDVRDRISNGI 217 (258)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC---CHHHHHHHHTTC
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc---CHHHHHHHhccC
Confidence 1569999999999999998875 99999999999999875432 223333444444
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC---CCCc-cEEEecCCC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP---KASG-RYLLAGSVA 257 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~---~~~g-~~~~~~~~~ 257 (322)
+..++++++|+|++++.++..+ ...| .|+++++..
T Consensus 218 ----~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~~ 256 (258)
T 3afn_B 218 ----PMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQY 256 (258)
T ss_dssp ----TTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTSS
T ss_pred ----CCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCcc
Confidence 5567899999999999999754 3356 567766543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-30 Score=216.70 Aligned_cols=220 Identities=16% Similarity=0.184 Sum_probs=167.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+|+||++++++|+++|++|++++|+..+.......++...+.++..+++|++|+++++++++ +
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999988864332222223333335678999999999999888776 7
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|++||+||.... ...+.++..+++|+.|+.++++++.+. .+.++||++||..++++.+..
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------- 151 (246)
T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQ----------- 151 (246)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC-----------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCC-----------
Confidence 8999999997532 233456679999999999999998432 156799999998777654321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.||.+.+.+.+.++.+ +|+++++++||.+.++..... .......+..+. +...+.
T Consensus 152 -----------~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~~r~~ 213 (246)
T 3osu_A 152 -----------ANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL---SDELKEQMLTQI----PLARFG 213 (246)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS---CHHHHHHHHTTC----TTCSCB
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc---CHHHHHHHHhcC----CCCCCc
Confidence 56999999999999999985 489999999999999875432 233344444444 566788
Q ss_pred eHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 229 EIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+++|+|+++++++... ..+| .++++++
T Consensus 214 ~~~dva~~v~~l~s~~~~~itG~~i~vdgG 243 (246)
T 3osu_A 214 QDTDIANTVAFLASDKAKYITGQTIHVNGG 243 (246)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 9999999999999754 3456 4566544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=205.29 Aligned_cols=200 Identities=19% Similarity=0.212 Sum_probs=151.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+||||||+||++++++|+++|++|++++|++..... . ...+++++.+|++|+++++++++++|+|||+|+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~-----~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-----E--GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-----S--SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc-----c--cCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 799999999999999999999999999999997643211 1 024688999999999999999999999999998
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
.... . ...++|+.++.++++++++. ++++||++||. .+++... ..+. +.+.|+.+
T Consensus 77 ~~~~--~----~~~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~-~~~~~~~----~~~~-------------~~~~y~~~ 131 (206)
T 1hdo_A 77 TRND--L----SPTTVMSEGARNIVAAMKAH-GVDKVVACTSA-FLLWDPT----KVPP-------------RLQAVTDD 131 (206)
T ss_dssp CTTC--C----SCCCHHHHHHHHHHHHHHHH-TCCEEEEECCG-GGTSCTT----CSCG-------------GGHHHHHH
T ss_pred CCCC--C----CccchHHHHHHHHHHHHHHh-CCCeEEEEeee-eeccCcc----cccc-------------cchhHHHH
Confidence 6533 1 12358999999999999997 88999999999 5554322 1100 12679999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCc
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG 248 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g 248 (322)
|.++|++++ +.+++++++||+.+ ++..... .... ...+. ...+++|++|+|++++.+++++...|
T Consensus 132 K~~~e~~~~----~~~i~~~~lrp~~~-~~~~~~~-~~~~-----~~~~~----~~~~~i~~~Dva~~~~~~~~~~~~~g 196 (206)
T 1hdo_A 132 HIRMHKVLR----ESGLKYVAVMPPHI-GDQPLTG-AYTV-----TLDGR----GPSRVISKHDLGHFMLRCLTTDEYDG 196 (206)
T ss_dssp HHHHHHHHH----HTCSEEEEECCSEE-ECCCCCS-CCEE-----ESSSC----SSCSEEEHHHHHHHHHHTTSCSTTTT
T ss_pred HHHHHHHHH----hCCCCEEEEeCCcc-cCCCCCc-ceEe-----cccCC----CCCCccCHHHHHHHHHHHhcCccccc
Confidence 999999884 46999999999997 3322111 1000 00111 11689999999999999999876555
Q ss_pred -cEEEecC
Q 020747 249 -RYLLAGS 255 (322)
Q Consensus 249 -~~~~~~~ 255 (322)
.|+++++
T Consensus 197 ~~~~i~~g 204 (206)
T 1hdo_A 197 HSTYPSHQ 204 (206)
T ss_dssp CEEEEECC
T ss_pred cceeeecc
Confidence 7777653
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=223.38 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=160.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc---cCCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL---DGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ .....++..+.+|++|+++++++++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE-ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999753321 111222 2223568999999999999888877
Q ss_pred ---CCCEEEEcccCccc-----C----CCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhh-hccCCCCCC
Q 020747 79 ---GCDGVFHTASPVIF-----L----SDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGA-MLLNETPMT 142 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~----~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~-~~~~~~~~~ 142 (322)
++|+|||+||.... . ..+.++..+++|+.|+.++++++.+.+ + ++||++||..+ +.+.+.
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~--- 158 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPD--- 158 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTT---
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCCC---
Confidence 79999999996432 1 334466789999999999999987642 4 79999999855 332221
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHH------HHH
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEV------ILN 213 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~------~~~ 213 (322)
...|+.||.+.+.+.+.++.+ +|++++++|||.++++............ ...
T Consensus 159 -------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 219 (278)
T 1spx_A 159 -------------------FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMAT 219 (278)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHH
Confidence 156999999999999999876 4899999999999998643211000000 122
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC---CCc-cEEEec-CCCCHHHHHHHHHHh
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVPK---ASG-RYLLAG-SVAQHSDILKFLREH 269 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~---~~g-~~~~~~-~~~~~~e~~~~i~~~ 269 (322)
+.... +...+++++|+|+++++++..+. ..| .+++.+ ...++.++++.+.+.
T Consensus 220 ~~~~~----p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 220 MKECV----PAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKL 276 (278)
T ss_dssp HHHHC----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC-----------
T ss_pred HHhcC----CCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHH
Confidence 22111 34568899999999999987532 456 556664 578999999988765
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=217.05 Aligned_cols=219 Identities=20% Similarity=0.121 Sum_probs=163.1
Q ss_pred CCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CC
Q 020747 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GC 80 (322)
Q Consensus 4 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~ 80 (322)
..+++|+|+||||+|+||++++++|+++|++|++++|+..... +...+ ..+++.+.+|++|+++++++++ .+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV-SLAKE----CPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH----STTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHh----ccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 3467799999999999999999999999999999998753221 11111 1245778999999999999887 47
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ + .++||++||..++.+.+.
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 145 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPN------------ 145 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT------------
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCC------------
Confidence 999999996432 2234556789999999999999887642 3 579999999855433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.||.+.|.+++.++.+ .+++++++|||.++|+...... ....++..+..+. +.++++
T Consensus 146 ----------~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~----~~~~~~ 210 (244)
T 1cyd_A 146 ----------LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-ADPEFARKLKERH----PLRKFA 210 (244)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CCHHHHHHHHHHS----TTSSCB
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc-cCHHHHHHHHhcC----CccCCC
Confidence 156999999999999999887 4899999999999998643111 1122333444444 567899
Q ss_pred eHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 229 EIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
+++|+|++++++++.+ ...| .+.+.+
T Consensus 211 ~~~dva~~~~~l~~~~~~~~~G~~~~v~g 239 (244)
T 1cyd_A 211 EVEDVVNSILFLLSDRSASTSGGGILVDA 239 (244)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred CHHHHHHHHHHHhCchhhcccCCEEEECC
Confidence 9999999999999764 2345 445554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=218.37 Aligned_cols=224 Identities=14% Similarity=0.133 Sum_probs=166.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.....++.++.+|++|+++++++++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999753321 1122222223568899999999999988876
Q ss_pred CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 155 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNIN------------ 155 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTT------------
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCC------------
Confidence 79999999997533 122345678999999999999998632 15689999999855432221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
.+.|+.||.+.|.+++.++.++ +++++++|||.++++...... .......+..+. +...++
T Consensus 156 ----------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~----~~~~~~ 219 (255)
T 1fmc_A 156 ----------MTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI--TPEIEQKMLQHT----PIRRLG 219 (255)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC--CHHHHHHHHHTC----SSCSCB
T ss_pred ----------CcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc--ChHHHHHHHhcC----CcccCC
Confidence 1569999999999999998775 899999999999998643221 223334444444 456788
Q ss_pred eHHHHHHHHHHhhcCC--CCCc-cEEEec-CCCC
Q 020747 229 EIRDVVYAHIRALEVP--KASG-RYLLAG-SVAQ 258 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g-~~~~~~-~~~~ 258 (322)
+++|+|+++++++..+ ...| .|++++ ...|
T Consensus 220 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s 253 (255)
T 1fmc_A 220 QPQDIANAALFLCSPAASWVSGQILTVSGGGVQE 253 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC
T ss_pred CHHHHHHHHHHHhCCccccCCCcEEEECCceecc
Confidence 9999999999999753 2345 677764 4444
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=223.24 Aligned_cols=261 Identities=14% Similarity=0.118 Sum_probs=187.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+|+|+||||||+||++++++|+++| ++|++++|+++......+. ..+++.+.+|++|+++++++++++|+|||+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~-----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELR-----LQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHH-----HTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHH-----HCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 4799999999999999999999999 9999999986543211111 135789999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
|+..... ..+.|+.++.+++++|++. ++++||++||. .+++... .. + ...|+
T Consensus 80 a~~~~~~-------~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~-~~~~~~~----------~~---~------~~~y~ 131 (299)
T 2wm3_A 80 TNYWESC-------SQEQEVKQGKLLADLARRL-GLHYVVYSGLE-NIKKLTA----------GR---L------AAAHF 131 (299)
T ss_dssp CCHHHHT-------CHHHHHHHHHHHHHHHHHH-TCSEEEECCCC-CHHHHTT----------TS---C------CCHHH
T ss_pred CCCCccc-------cchHHHHHHHHHHHHHHHc-CCCEEEEEcCc-cccccCC----------Cc---c------cCchh
Confidence 9853221 2457899999999999998 89999998876 5543221 00 1 14599
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC---CCC--C-CCCcceeHHHHHHHHHHh
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD---QSF--A-FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~---~~~--~-~~~~~i~~~D~a~~~~~~ 240 (322)
.+|..+|++++. .|++++++||+.+||+......... ...|. ..+ + ..++|+|++|+|++++.+
T Consensus 132 ~sK~~~e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~ 201 (299)
T 2wm3_A 132 DGKGEVEEYFRD----IGVPMTSVRLPCYFENLLSHFLPQK------APDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSL 201 (299)
T ss_dssp HHHHHHHHHHHH----HTCCEEEEECCEEGGGGGTTTCCEE------CTTSSSEEECCCCTTSCEEEECGGGHHHHHHHH
T ss_pred hHHHHHHHHHHH----CCCCEEEEeecHHhhhchhhcCCcc------cCCCCEEEEEecCCCCccceecHHHHHHHHHHH
Confidence 999999999864 5999999999999997543211110 11221 012 2 678999999999999999
Q ss_pred hcCCC--CCccEEEecCCCCHHHHHHHHHHhCCCC----CCCCCCcc----C-----------CCCccccchHHH-HhhC
Q 020747 241 LEVPK--ASGRYLLAGSVAQHSDILKFLREHYPTL----LRSGKLEE----K-----------YQPTIKVSQERA-KSLG 298 (322)
Q Consensus 241 ~~~~~--~~g~~~~~~~~~~~~e~~~~i~~~~~~~----~~~~~~~~----~-----------~~~~~~~~~~k~-~~lg 298 (322)
+.++. .+..|+++++.+|+.|+++.+.+.+|.. ++|.+... + .......+ ... +.+|
T Consensus 202 l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 280 (299)
T 2wm3_A 202 LKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALRPDRD-IELTLRLN 280 (299)
T ss_dssp HHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTCCCCC-HHHHHHHC
T ss_pred HcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhcCCCC-HHHHHHhC
Confidence 98742 3447888888899999999999988642 22221100 0 00011112 233 6678
Q ss_pred CcccchhhhHHHHH
Q 020747 299 INFTPWEVGVRGCI 312 (322)
Q Consensus 299 ~~~~~~~~~l~~~~ 312 (322)
-+|++|++.+++..
T Consensus 281 ~~~~~~~~~~~~~~ 294 (299)
T 2wm3_A 281 PKALTLDQWLEQHK 294 (299)
T ss_dssp TTCCCHHHHHHHHG
T ss_pred CCCCCHHHHHHhCh
Confidence 88888998887653
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-29 Score=213.37 Aligned_cols=210 Identities=21% Similarity=0.214 Sum_probs=162.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ..++.++++|++|+++++++++
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 95 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA----------DPDIHTVAGDISKPETADRIVREGIERFG 95 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS----------STTEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc----------cCceEEEEccCCCHHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999999999999865432 2368999999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..+..+...
T Consensus 96 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 164 (260)
T 3un1_A 96 RIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVG----------- 164 (260)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCC-----------
Confidence 78999999996432 234456788999999999999988432 25679999999844322111
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+ ...|+.||.+.+.+.+.++.++ |+++++++||.|+++..... ......... +...+
T Consensus 165 ---~~------~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~------~~~~~~~~~----p~~r~ 225 (260)
T 3un1_A 165 ---MP------SALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE------THSTLAGLH----PVGRM 225 (260)
T ss_dssp ---CC------CHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG------GHHHHHTTS----TTSSC
T ss_pred ---Cc------cHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH------HHHHHhccC----CCCCC
Confidence 01 1569999999999999999987 89999999999999875421 112222222 55678
Q ss_pred eeHHHHHHHHHHhhcCCCCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVPKASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~~~~g-~~~~~~~ 255 (322)
.+++|+|++++++.+.....| .++++++
T Consensus 226 ~~~~dva~av~~L~~~~~itG~~i~vdGG 254 (260)
T 3un1_A 226 GEIRDVVDAVLYLEHAGFITGEILHVDGG 254 (260)
T ss_dssp BCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHhcccCCCCCcEEEECCC
Confidence 899999999999976666677 4566543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=220.47 Aligned_cols=244 Identities=20% Similarity=0.163 Sum_probs=177.8
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC---CCcEEEEEccCCCccchHHhhC
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA---TERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... ..++.++++|++|+++++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 83 (281)
T 3svt_A 5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLA-GAVQELEALGANGGAIRYEPTDITNEDETARAVD 83 (281)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHH
T ss_pred CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHH
Confidence 333467899999999999999999999999999999998764322 222222222 2378999999999998887776
Q ss_pred -------CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCC
Q 020747 79 -------GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 79 -------~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
++|++||+||... ....+.+...+++|+.|+.++++++.+.+ +.++||++||..++.+.+..
T Consensus 84 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-- 161 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWF-- 161 (281)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTC--
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCC--
Confidence 6799999999622 13344567899999999999999887642 34599999999666543321
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ 219 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 219 (322)
+.|+.||++.+.+++.++.++ |+++++++||.|+++...... .............
T Consensus 162 --------------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~- 219 (281)
T 3svt_A 162 --------------------GAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT-ESAELSSDYAMCT- 219 (281)
T ss_dssp --------------------THHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TCHHHHHHHHHHC-
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc-cCHHHHHHHHhcC-
Confidence 569999999999999999875 699999999999998643210 1112222233332
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEec-CCCC-HHHHHHHHHHhCCCC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAG-SVAQ-HSDILKFLREHYPTL 273 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~-~~~~-~~e~~~~i~~~~~~~ 273 (322)
+...+.+++|+|+++++++... ..+| .+++++ ...+ ..++++.+.+.++..
T Consensus 220 ---p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~ 275 (281)
T 3svt_A 220 ---PLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRD 275 (281)
T ss_dssp ---SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTT
T ss_pred ---CCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCc
Confidence 5567789999999999999753 3456 556654 3444 668888888877643
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=210.57 Aligned_cols=216 Identities=23% Similarity=0.194 Sum_probs=158.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+...... ...++ ..++.++++|++|+++++++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEE-PAAEL---GAAVRFRNADVTNEADATAALAFAKQEFG 80 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-HHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 667999999999999999999999999999999998754322 11222 3468899999999999888776
Q ss_pred CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC---------CccEEEEecchhhhccCCCC
Q 020747 79 GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH---------SIKRVVLTSSIGAMLLNETP 140 (322)
Q Consensus 79 ~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~i~~SS~~~~~~~~~~ 140 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+ +.++||++||..++.+.+..
T Consensus 81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 160 (257)
T 3tpc_A 81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQ 160 (257)
T ss_dssp CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTC
T ss_pred CCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCCC
Confidence 78999999997532 2234567889999999999999987642 34689999999776654321
Q ss_pred CCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcC
Q 020747 141 MTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLING 217 (322)
Q Consensus 141 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g 217 (322)
..|+.||++.+.+.+.++.+ +|+++++++||.|.++....... .....+...
T Consensus 161 ----------------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~---~~~~~~~~~ 215 (257)
T 3tpc_A 161 ----------------------AAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQ---DVQDALAAS 215 (257)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-----------------CC
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCH---HHHHHHHhc
Confidence 56999999999999999988 59999999999999986432111 111111111
Q ss_pred CCCCCCC-CcceeHHHHHHHHHHhhcCCCCCccE-EEec
Q 020747 218 DQSFAFP-YIFVEIRDVVYAHIRALEVPKASGRY-LLAG 254 (322)
Q Consensus 218 ~~~~~~~-~~~i~~~D~a~~~~~~~~~~~~~g~~-~~~~ 254 (322)
. +. ..+.+++|+|+++++++++...+|.. .+.|
T Consensus 216 ~----p~~~r~~~~~dva~~v~~l~s~~~itG~~i~vdG 250 (257)
T 3tpc_A 216 V----PFPPRLGRAEEYAALVKHICENTMLNGEVIRLDG 250 (257)
T ss_dssp S----SSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred C----CCCCCCCCHHHHHHHHHHHcccCCcCCcEEEECC
Confidence 1 33 56889999999999999887777855 4544
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=217.38 Aligned_cols=224 Identities=16% Similarity=0.150 Sum_probs=163.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... +.++.++++|++|+++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLH-EAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSS 82 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999999999753321 111222111 3468899999999999888776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 153 (263)
T 3ai3_A 83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWY--------- 153 (263)
T ss_dssp HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCC---------
Confidence 78999999996532 223356788999999999999998643 15679999999855543221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC--------ccHHHHHHHHcC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN--------FGAEVILNLING 217 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~~~~~~g 217 (322)
...|+.||.+.+.+.+.++.+ +|++++++|||.++++....... ........+..+
T Consensus 154 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T 3ai3_A 154 -------------EPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE 220 (263)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc
Confidence 156999999999999999987 59999999999999985321100 011112222222
Q ss_pred -CCCCCCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 218 -DQSFAFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 218 -~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
. +...+++++|+|+++++++..+. ..| .+++.++
T Consensus 221 ~~----p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG 258 (263)
T 3ai3_A 221 HA----PIKRFASPEELANFFVFLCSERATYSVGSAYFVDGG 258 (263)
T ss_dssp HC----TTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred CC----CCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 2 45678999999999999997642 356 5566543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=213.95 Aligned_cols=224 Identities=16% Similarity=0.132 Sum_probs=164.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.....++.++++|++|+++++++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT-KAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999753321 1222222223568999999999999888775
Q ss_pred CCCEEEEcccCcc-c-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI-F-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||... . ...+.+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---------- 159 (260)
T 3awd_A 90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRP---------- 159 (260)
T ss_dssp CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS----------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCC----------
Confidence 6899999999654 1 122234678999999999999998753 15679999999855433221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
.+ .+.|+.+|++.|.+++.++.+ +|++++++|||.++++....... .......+..+. +...
T Consensus 160 ----~~------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~~~ 224 (260)
T 3awd_A 160 ----QQ------QAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME-KPELYDAWIAGT----PMGR 224 (260)
T ss_dssp ----SC------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT-CHHHHHHHHHTC----TTSS
T ss_pred ----CC------ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC-ChHHHHHHHhcC----CcCC
Confidence 11 156999999999999999988 69999999999999987531111 122333344443 4466
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 227 FVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+++++|+|++++.++... ...| .+++.++
T Consensus 225 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 256 (260)
T 3awd_A 225 VGQPDEVASVVQFLASDAASLMTGAIVNVDAG 256 (260)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCchhccCCCcEEEECCc
Confidence 889999999999998753 3456 5566654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=226.95 Aligned_cols=221 Identities=16% Similarity=0.190 Sum_probs=166.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEcc-CCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN-LLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-l~~~~~~~~~~~~~d~vih~ 86 (322)
+|+|+|||||||||++|+++|+++|++|++++|+.+......+.. ..+++.+.+| ++|++++.++++++|+|||+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~----~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQA----IPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHT----STTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhh----cCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 578999999999999999999999999999999875431111111 2368899999 99999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchh-hhccCCCCCCCCccccCCCCCCcccccccchh
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIG-AMLLNETPMTPDVVIDETWFSNPVLCKENKEW 164 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~-~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 164 (322)
++... .+.|..+ .+++++|++. + +++|||+||.. ..++.. +. +.
T Consensus 81 a~~~~----------~~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~~~~~----------------~~------~~ 126 (352)
T 1xgk_A 81 TTSQA----------GDEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSLYGPW----------------PA------VP 126 (352)
T ss_dssp CCSTT----------SCHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGGTSSC----------------CC------CT
T ss_pred CCCCC----------cHHHHHH-HHHHHHHHHc-CCccEEEEeCCccccccCCC----------------CC------cc
Confidence 86431 1347777 9999999998 7 89999999984 233211 01 44
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC----CC-C-CCCcceeH-HHHHHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ----SF-A-FPYIFVEI-RDVVYAH 237 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~----~~-~-~~~~~i~~-~D~a~~~ 237 (322)
|+.+|.++|++++. .+++++++||+ +||+........... ......|.. +. + +.++++|+ +|+|+++
T Consensus 127 y~~sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai 200 (352)
T 1xgk_A 127 MWAPKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQ-MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPAL 200 (352)
T ss_dssp TTHHHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCB-EEECTTSCEEEEESSCTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCCEEEEecc-eecCCchhccccccc-ccccCCCceEEeeccCCCCceeeEecHHHHHHHH
Confidence 99999999999864 49999999976 788865432110000 000112321 11 2 77899999 8999999
Q ss_pred HHhhcCCC---CCccEEEecCCCCHHHHHHHHHHhCCC
Q 020747 238 IRALEVPK---ASGRYLLAGSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 238 ~~~~~~~~---~~g~~~~~~~~~~~~e~~~~i~~~~~~ 272 (322)
+.+++++. .++.|+++++.+|++|+++.+.+..|.
T Consensus 201 ~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G~ 238 (352)
T 1xgk_A 201 LQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 238 (352)
T ss_dssp HHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHCC
Confidence 99998752 355888888889999999999998874
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=209.48 Aligned_cols=222 Identities=18% Similarity=0.088 Sum_probs=167.4
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|+..+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++.+|++|+++++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 5 MTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLA-GAAASV---GRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHH-HHHHHH---CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh---CCCeEEEECCCCCHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999999875532 222222 3567899999999999888776
Q ss_pred ----CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 ----GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ----~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----- 155 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDM----- 155 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSS-----
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCC-----
Confidence 78999999997521 233456789999999999999998432 25679999999866554332
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|+++...... .......+....
T Consensus 156 -----------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~~--- 213 (271)
T 3tzq_B 156 -----------------STAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL--PQPIVDIFATHH--- 213 (271)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC-----CHHHHHHHHTTS---
T ss_pred -----------------ChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC--CHHHHHHHHhcC---
Confidence 156999999999999999988 5999999999999998754322 122233333333
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
....+.+++|+|+++++++... ..+| .+.+.++
T Consensus 214 -~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 214 -LAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 4456789999999999999754 3467 4456555
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-30 Score=223.34 Aligned_cols=238 Identities=17% Similarity=0.078 Sum_probs=170.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++... +.++.++.+|++|+++++++++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK-ATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 102 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999753321 111222111 3468999999999998887766
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 173 (302)
T 1w6u_A 103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF--------- 173 (302)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTT---------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCC---------
Confidence 46999999996422 233456789999999999999888653 24579999999866554322
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||++.+.+++.++.+ +|++++++|||.++++...............+..+. +..
T Consensus 174 -------------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~----p~~ 236 (302)
T 1w6u_A 174 -------------VVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI----PCG 236 (302)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC----TTS
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcC----CcC
Confidence 156999999999999999988 699999999999999843221111111112333333 445
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCc-cEEEec-CCCCHHHHHHHHHHhC
Q 020747 226 IFVEIRDVVYAHIRALEVPK--ASG-RYLLAG-SVAQHSDILKFLREHY 270 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~-~~~~~~e~~~~i~~~~ 270 (322)
.+++++|+|+++++++.... ..| .+++.+ ..++++++++.+.+..
T Consensus 237 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~ 285 (302)
T 1w6u_A 237 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVT 285 (302)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCC
T ss_pred CCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhc
Confidence 68899999999999997532 356 566664 4567777777666554
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=213.89 Aligned_cols=224 Identities=17% Similarity=0.159 Sum_probs=164.7
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. .+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++++|++|+++++++++
T Consensus 2 mm~-~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 2 MMK-RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERAR-QAAAEI---GPAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp --C-TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccc-cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCCceEEEeeCCCHHHHHHHHHHH
Confidence 443 356799999999999999999999999999999998754321 122222 3468899999999999888776
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+ + .++||++||..++.+.+.
T Consensus 77 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 151 (259)
T 4e6p_A 77 VEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEAL----- 151 (259)
T ss_dssp HHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT-----
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCC-----
Confidence 78999999996432 2345567889999999999999987642 1 458999999866654432
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC---
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--- 218 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--- 218 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|+++..... ...+.......
T Consensus 152 -----------------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~ 210 (259)
T 4e6p_A 152 -----------------VAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV----DALFARYENRPRGE 210 (259)
T ss_dssp -----------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH----HHHHHHHHTCCTTH
T ss_pred -----------------ChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh----hhhhhhhccCChHH
Confidence 1569999999999999999875 89999999999999863221 11111111100
Q ss_pred --CCCC---CCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 219 --QSFA---FPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 219 --~~~~---~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+. +.+++.+++|+|+++++++... ..+| .++++++
T Consensus 211 ~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG 255 (259)
T 4e6p_A 211 KKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGG 255 (259)
T ss_dssp HHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcC
Confidence 0000 6788999999999999998643 3456 5666643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-29 Score=212.54 Aligned_cols=220 Identities=19% Similarity=0.167 Sum_probs=166.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..+.. +...++.... .++.++++|++|+++++++++
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADID-ACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999764322 2222332222 578999999999999887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhh-ccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAM-LLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~-~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.+++.+++|+.++.++++++.+.+ +.++||++||..+. .+.+.
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~--------- 157 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPG--------- 157 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTT---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCC---------
Confidence 78999999996532 2334566789999999999999987652 56799999998553 32221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|+++..... .......+.... +..
T Consensus 158 -------------~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~~ 217 (262)
T 3pk0_A 158 -------------WSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN---GEEYIASMARSI----PAG 217 (262)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT---CHHHHHHHHTTS----TTS
T ss_pred -------------ChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc---CHHHHHHHHhcC----CCC
Confidence 156999999999999999988 599999999999999854322 122333444433 456
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
.+.+++|+|+++++++... ..+|. +++.|+
T Consensus 218 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG 250 (262)
T 3pk0_A 218 ALGTPEDIGHLAAFLATKEAGYITGQAIAVDGG 250 (262)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 6789999999999998753 35674 455543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=210.36 Aligned_cols=219 Identities=18% Similarity=0.120 Sum_probs=161.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCD 81 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 81 (322)
.+++|+|+||||+|+||++++++|+++|++|++++|+..+.. ....+. .+++.+.+|++|+++++++++ ++|
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~id 78 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLD-SLVREC----PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHc----CCCCEEEEeCCCHHHHHHHHHHcCCCC
Confidence 366799999999999999999999999999999998753221 111111 235677999999999999887 579
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|||+||.... ...+.+...+++|+.++.++++++.+.+ + .++||++||..++.+.+.
T Consensus 79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------- 145 (244)
T 3d3w_A 79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTN------------- 145 (244)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT-------------
T ss_pred EEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCC-------------
Confidence 99999996432 2234467899999999999999887641 3 579999999855432211
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
.+.|+.||++.|.+++.++.+ .|++++++|||.++++........ ......+..+. +..++++
T Consensus 146 ---------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~----~~~~~~~ 211 (244)
T 3d3w_A 146 ---------HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD-PHKAKTMLNRI----PLGKFAE 211 (244)
T ss_dssp ---------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCS-TTHHHHHHHTC----TTCSCBC
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccC-hHHHHHHHhhC----CCCCCcC
Confidence 156999999999999999887 489999999999999864311110 11122333333 5567899
Q ss_pred HHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 230 IRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
++|+|+++++++.+. ...| .|+++++
T Consensus 212 ~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 3d3w_A 212 VEHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 999999999999754 3456 5666643
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=208.76 Aligned_cols=221 Identities=16% Similarity=0.110 Sum_probs=153.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++++..........++.....++.++.+|++|+++++++++
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999985433222112222222224568999999999999887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..++++.+.
T Consensus 83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------- 151 (247)
T 2hq1_A 83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAG----------- 151 (247)
T ss_dssp CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCC-----------
Confidence 78999999996532 234566789999999999999888653 15679999999866665432
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.++ ++++++++||.+.++..... .......+..+. +...+
T Consensus 152 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~----~~~~~ 213 (247)
T 2hq1_A 152 -----------QANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVL---PDKVKEMYLNNI----PLKRF 213 (247)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHTTS----TTSSC
T ss_pred -----------CcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhc---chHHHHHHHhhC----CCCCC
Confidence 1569999999999999998875 89999999999988743221 112222233333 44678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
++++|+|++++.++..+ ...| .|+++++
T Consensus 214 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 244 (247)
T 2hq1_A 214 GTPEEVANVVGFLASDDSNYITGQVINIDGG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence 99999999999988753 2355 5676654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=210.15 Aligned_cols=223 Identities=17% Similarity=0.083 Sum_probs=164.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.....++..+++|++|+++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLE-EAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999999764322 2223333345679999999999999887776
Q ss_pred -CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||... ....+.++..+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 152 (257)
T 3imf_A 82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPG--------- 152 (257)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTT---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCC---------
Confidence 6899999999532 2334456789999999999999998542 24579999999866654332
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|.++.................... +.
T Consensus 153 -------------~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----p~ 215 (257)
T 3imf_A 153 -------------VIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV----PL 215 (257)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS----TT
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC----CC
Confidence 156999999999999988865 389999999999999864321110000111222222 45
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
..+.+++|+|+++++++... ..+|.. ++.|
T Consensus 216 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 248 (257)
T 3imf_A 216 GRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDG 248 (257)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence 66889999999999999754 346744 5554
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=215.01 Aligned_cols=224 Identities=20% Similarity=0.155 Sum_probs=160.8
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-------CcEEEEEccCCCccchH
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-------ERLHLFKANLLEEGSFD 74 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~ 74 (322)
|...+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.... .++.++.+|++|+++++
T Consensus 1 m~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 79 (264)
T 2pd6_A 1 MQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQ-ETVRLLGGPGSKEGPPRGNHAAFQADVSEARAAR 79 (264)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTC------------CCEEEECCTTSHHHHH
T ss_pred CccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhcCccccccCcceEEEEecCCCHHHHH
Confidence 344567899999999999999999999999999999999753321 1112221111 46789999999999888
Q ss_pred HhhCC-------C-CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccC
Q 020747 75 SAVDG-------C-DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLN 137 (322)
Q Consensus 75 ~~~~~-------~-d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~ 137 (322)
+++++ + |+|||+||.... ...+.+...+++|+.|+.++++++.+.+ + .++||++||..++++.
T Consensus 80 ~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 159 (264)
T 2pd6_A 80 CLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN 159 (264)
T ss_dssp HHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC
T ss_pred HHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC
Confidence 77764 4 999999996532 2334567889999999999999987642 3 4699999998666543
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHH
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNL 214 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~ 214 (322)
+. ...|+.||.+.+.+++.++.+ +|++++++|||.++++...... ......+
T Consensus 160 ~~----------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---~~~~~~~ 214 (264)
T 2pd6_A 160 VG----------------------QTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVP---QKVVDKI 214 (264)
T ss_dssp TT----------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-------------CT
T ss_pred CC----------------------ChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcC---HHHHHHH
Confidence 32 156999999999999999887 6999999999999998643211 1111111
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+. +...+++++|+|++++.++... ...| .+.+.++
T Consensus 215 ~~~~----~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 254 (264)
T 2pd6_A 215 TEMI----PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGG 254 (264)
T ss_dssp GGGC----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHhC----CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 1111 3456789999999999998753 3456 4455543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=213.69 Aligned_cols=225 Identities=15% Similarity=0.186 Sum_probs=161.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..+.......++... ..++.++++|++|+++++++++
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999999999885432222222222222 4578999999999999887776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+..
T Consensus 102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 173 (281)
T 3v2h_A 102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFK-------- 173 (281)
T ss_dssp TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC--------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCc--------
Confidence 68999999997432 234456789999999999999998442 145789999998666544321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHH--------HHHH-HHc
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAE--------VILN-LIN 216 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~--------~~~~-~~~ 216 (322)
..|+.||++.+.+.+.++.++ |+++++++||.|.++........... .+.. +..
T Consensus 174 --------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
T 3v2h_A 174 --------------SAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLK 239 (281)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHh
Confidence 569999999999999999875 89999999999999865432111000 0000 111
Q ss_pred CCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 020747 217 GDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASGR-YLLAGS 255 (322)
Q Consensus 217 g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g~-~~~~~~ 255 (322)
+. +...+++++|+|+++++++.... .+|. +++.|+
T Consensus 240 ~~----p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG 277 (281)
T 3v2h_A 240 GQ----PTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG 277 (281)
T ss_dssp CC----TTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred cC----CCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence 11 66789999999999999997642 4564 455543
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=209.04 Aligned_cols=220 Identities=18% Similarity=0.164 Sum_probs=162.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc-cCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-DGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
+|+++||||+|+||++++++|+++|++|++++|+.+... ....++ .....++.++.+|++|+++++++++ +
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLE-ETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999998753321 111222 2224578999999999999888776 7
Q ss_pred CCEEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 80 CDGVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 80 ~d~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
+|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 151 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPG--------- 151 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCC---------
Confidence 8999999996432 122346778999999999888877543 15689999999866543321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.+.|+.||.+.+.+++.++.++ |++++++|||.++++....... .......+..+. +..
T Consensus 152 -------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~~ 213 (250)
T 2cfc_A 152 -------------RSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD-QPELRDQVLARI----PQK 213 (250)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT-SHHHHHHHHTTC----TTC
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC-CHHHHHHHHhcC----CCC
Confidence 1569999999999999999876 9999999999999987432111 122233333333 445
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCcc-EEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVPK--ASGR-YLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~--~~g~-~~~~~~ 255 (322)
.+.+++|+|+++++++..+. ..|. +++.++
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 214 EIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp SCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 68899999999999997642 3464 455543
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=212.51 Aligned_cols=228 Identities=20% Similarity=0.126 Sum_probs=167.5
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.....++.++.+|++|+++++++++
T Consensus 1 M~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (280)
T 3tox_A 1 MVMSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALA-ELTDEIAGGGGEAAALAGDVGDEALHEALVELA 79 (280)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHH-HHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 4434467899999999999999999999999999999998754321 2233333345678999999999999887776
Q ss_pred -----CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhh-ccCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAM-LLNETPMTP 143 (322)
Q Consensus 79 -----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~-~~~~~~~~~ 143 (322)
++|++||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..++ .+.+.
T Consensus 80 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---- 155 (280)
T 3tox_A 80 VRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAG---- 155 (280)
T ss_dssp HHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTT----
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCC----
Confidence 68999999996421 234456789999999999999998654 245699999998554 22211
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC-ccHHHHHHHHcCCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN-FGAEVILNLINGDQ 219 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~ 219 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++....... ........+....
T Consensus 156 ------------------~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~- 216 (280)
T 3tox_A 156 ------------------VAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH- 216 (280)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS-
T ss_pred ------------------chhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC-
Confidence 1569999999999999999885 8999999999999986543111 1112222223322
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
+...+.+++|+|+++++++... ..+|. +++.|+
T Consensus 217 ---p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 252 (280)
T 3tox_A 217 ---ALKRIARPEEIAEAALYLASDGASFVTGAALLADGG 252 (280)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---ccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCC
Confidence 4567889999999999999763 35674 455543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=212.50 Aligned_cols=221 Identities=18% Similarity=0.157 Sum_probs=152.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..+...+...++...+.++.++++|++|+++++++++
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999754332222233333335679999999999999888776
Q ss_pred CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHHHHHhhcC---C---ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVLRSCAKVH---S---IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~---~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||... ....+.+.+.+++|+.|+.++++++.+.+ + .++||++||..++.+.+..
T Consensus 107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~----- 181 (280)
T 4da9_A 107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPER----- 181 (280)
T ss_dssp CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CC-----
T ss_pred CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCc-----
Confidence 7899999999731 12345577899999999999999987642 1 4589999998666544321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
..|+.||++.+.+.+.++.+ .|+++++++||.|.++........ .......+..
T Consensus 182 -----------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~---~~~~~~~~~~--- 238 (280)
T 4da9_A 182 -----------------LDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK---YDGLIESGLV--- 238 (280)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchh---HHHHHhhcCC---
Confidence 56999999999999999988 489999999999999864322111 1111111010
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC--CCccE-EEec
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK--ASGRY-LLAG 254 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~--~~g~~-~~~~ 254 (322)
+...+.+++|+|+++++++.... .+|.. ++.|
T Consensus 239 p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 273 (280)
T 4da9_A 239 PMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADG 273 (280)
T ss_dssp ---CCBCHHHHHHHHHHHHTSTTGGGTTCEEEEST
T ss_pred CcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 45667899999999999997653 46754 4544
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=212.17 Aligned_cols=226 Identities=15% Similarity=0.073 Sum_probs=166.2
Q ss_pred CCCCCCCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||...+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+.+.++......+.++++|++|+++++++++
T Consensus 1 M~~~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (261)
T 2wyu_A 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER--LRPEAEKLAEALGGALLFRADVTQDEELDALFA 78 (261)
T ss_dssp CEEECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG--GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHH
T ss_pred CCccCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHH
Confidence 66556778999999999 99999999999999999999999763 112222222111237889999999998887776
Q ss_pred -------CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCC
Q 020747 79 -------GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 -------~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~ 141 (322)
++|+|||+||... ....+.++..+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 79 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~-- 156 (261)
T 2wyu_A 79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPK-- 156 (261)
T ss_dssp HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTT--
T ss_pred HHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCCC--
Confidence 6899999999643 123445678999999999999999987531 258999999855543321
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|+++..... .........+....
T Consensus 157 --------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~ 215 (261)
T 2wyu_A 157 --------------------YNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-PGFTKMYDRVAQTA 215 (261)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC-TTHHHHHHHHHHHS
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc-cccHHHHHHHHhcC
Confidence 1569999999999999999875 99999999999999864321 11122222222222
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+.+++|+|+++++++... ...| .+++.++
T Consensus 216 ----p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 251 (261)
T 2wyu_A 216 ----PLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAG 251 (261)
T ss_dssp ----TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 4456789999999999998653 3356 4566543
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=212.28 Aligned_cols=219 Identities=19% Similarity=0.148 Sum_probs=165.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..........++...+.++..+++|++|+++++++++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW 104 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999999999999998854332222222333234678999999999999887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.++..+++|+.|+.++++++.+. .+.++||++||..+..+.+..
T Consensus 105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 175 (269)
T 4dmm_A 105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQ--------- 175 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTC---------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCc---------
Confidence 68999999997532 234556789999999999999998543 145799999998776654321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.||.+.+.+.+.++.+ .|+++++++||.|.++.... . ......... +...
T Consensus 176 -------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~--~~~~~~~~~----p~~r 232 (269)
T 4dmm_A 176 -------------ANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE----L--AAEKLLEVI----PLGR 232 (269)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH----H--HHHHHGGGC----TTSS
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc----c--cHHHHHhcC----CCCC
Confidence 56999999999999999987 48999999999999986432 1 112222222 5567
Q ss_pred ceeHHHHHHHHHHhhcCC---CCCc-cEEEecC
Q 020747 227 FVEIRDVVYAHIRALEVP---KASG-RYLLAGS 255 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~---~~~g-~~~~~~~ 255 (322)
+.+++|+|+++++++.++ ..+| .+++.|+
T Consensus 233 ~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG 265 (269)
T 4dmm_A 233 YGEAAEVAGVVRFLAADPAAAYITGQVINIDGG 265 (269)
T ss_dssp CBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCCcccCCCcCCEEEECCC
Confidence 889999999999999873 2456 4455543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=210.52 Aligned_cols=227 Identities=16% Similarity=0.111 Sum_probs=163.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 82 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. ....+ ...++.++++|++|+++++++++ ++|+
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~-~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~ 89 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGE-AAART---MAGQVEVRELDLQDLSSVRRFADGVSGADV 89 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHTT---SSSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHH---hcCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 56799999999999999999999999999999999764321 11111 14578999999999999998887 5699
Q ss_pred EEEcccCccc---CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 83 VFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 83 vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|||+||.... ...+.++..+++|+.|+.++++++.+. ..++||++||..++.+.... .....+..+..+.
T Consensus 90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~~~~~~---~~~~~~~~~~~~~--- 162 (291)
T 3rd5_A 90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWPGRINL---EDLNWRSRRYSPW--- 162 (291)
T ss_dssp EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTTCCCCS---SCTTCSSSCCCHH---
T ss_pred EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhccCCCCc---ccccccccCCCCc---
Confidence 9999997543 345667899999999999999999997 46799999998666543321 1111222222222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHc---C--ccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKEN---G--IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVV 234 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a 234 (322)
..|+.||++.+.+++.++.++ | +++++++||.|.++........ ........ +..+-..+++|+|
T Consensus 163 ---~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~A 232 (291)
T 3rd5_A 163 ---LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRK----LGDALMSA---ATRVVATDADFGA 232 (291)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------------CHHHHHHH
T ss_pred ---chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchH----HHHHHHHH---HHHHHhCCHHHHH
Confidence 679999999999999998875 5 9999999999998764432111 11111000 0122234599999
Q ss_pred HHHHHhhcCCCCCccEEEe
Q 020747 235 YAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~ 253 (322)
+++++++..+..+|.|+..
T Consensus 233 ~~~~~l~~~~~~~G~~~~v 251 (291)
T 3rd5_A 233 RQTLYAASQDLPGDSFVGP 251 (291)
T ss_dssp HHHHHHHHSCCCTTCEEEE
T ss_pred HHHHHHHcCCCCCCceeCC
Confidence 9999999887778876543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=211.22 Aligned_cols=221 Identities=16% Similarity=0.097 Sum_probs=162.5
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+ |+||++++++|+++|++|++++|+. . ..+.+.++........++++|++|+++++++++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-K-LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-T-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-H-HHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999 9999999999999999999999976 2 112222222111234788999999998887776
Q ss_pred --CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 --GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 --~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+. .++||++||..++.+.+.
T Consensus 85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 158 (265)
T 1qsg_A 85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPN------ 158 (265)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT------
T ss_pred cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCCC------
Confidence 57999999996532 33345678999999999999999988632 258999999856543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|+++..... .........+..+.
T Consensus 159 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~---- 217 (265)
T 1qsg_A 159 ----------------YNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI-KDFRKMLAHCEAVT---- 217 (265)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHS----
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-cccHHHHHHHHhcC----
Confidence 1459999999999999999885 89999999999999864321 11122222222222
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+.+++|+|+++++++... ...| .+++.++
T Consensus 218 p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 253 (265)
T 1qsg_A 218 PIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 253 (265)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCC
Confidence 3456789999999999998753 3356 4555543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=208.58 Aligned_cols=224 Identities=21% Similarity=0.129 Sum_probs=164.0
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC--
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
|...+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.. .+.++..+.+|++|+++++++++
T Consensus 1 m~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (248)
T 2pnf_A 1 MEIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAK-AVAEEIANKYGVKAHGVEMNLLSEESINKAFEEI 79 (248)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 333467799999999999999999999999999999999753221 11111111 13468899999999999888876
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++++.+..
T Consensus 80 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----- 154 (248)
T 2pnf_A 80 YNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQ----- 154 (248)
T ss_dssp HHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTTC-----
T ss_pred HHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCCC-----
Confidence 78999999996532 223345678999999998888776542 156899999998666654321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
..|+.+|.+.+.+++.++.++ +++++++|||.++++..... . ...........
T Consensus 155 -----------------~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~-~--~~~~~~~~~~~---- 210 (248)
T 2pnf_A 155 -----------------VNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL-S--EEIKQKYKEQI---- 210 (248)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-C--HHHHHHHHHTC----
T ss_pred -----------------chHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc-c--HHHHHHHHhcC----
Confidence 569999999999999998764 89999999999999864421 1 11122222222
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+++++|+|++++.++... ...| .|+++++
T Consensus 211 ~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 211 PLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 4456889999999999998753 3345 5666654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=208.01 Aligned_cols=221 Identities=18% Similarity=0.169 Sum_probs=164.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
++|+++||||+|+||++++++|+++|++|+++ +|+.... .+...++...+.++.++++|++|+++++++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAA-LETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999987 5543221 12223333335679999999999998887775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.++..+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 150 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLEN----------- 150 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCC-----------
Confidence 57999999985322 334456778999999999999998543 24579999999866544332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+.|+.||++.+.+.+.++.++ |+++++++||.|.++...... ............. +...+
T Consensus 151 -----------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~----p~~r~ 214 (258)
T 3oid_A 151 -----------YTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFP-NREDLLEDARQNT----PAGRM 214 (258)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCT-THHHHHHHHHHHC----TTSSC
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcc-cCHHHHHHHHhcC----CCCCC
Confidence 1569999999999999999885 899999999999998654322 1122233333333 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+++|+|+++++++... ..+| .+++.|+
T Consensus 215 ~~~~dva~~v~~L~s~~~~~itG~~i~vdGG 245 (258)
T 3oid_A 215 VEIKDMVDTVEFLVSSKADMIRGQTIIVDGG 245 (258)
T ss_dssp BCHHHHHHHHHHHTSSTTTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 89999999999999764 3556 4455543
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=212.34 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=146.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh--------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-------- 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------- 77 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.....++..+.+|++|++++++++
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELN-ECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999998753321 122222222346889999999999888776
Q ss_pred CCCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 78 DGCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 78 ~~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.++|+|||+||.... ...+.+.+.+++|+.++.++++++. +. +.++||++||..++.+.+.
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~--------- 160 (266)
T 1xq1_A 91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFMSSIAGVVSASV--------- 160 (266)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEEC-------------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEccchhccCCCC---------
Confidence 578999999996432 1233456789999999999999984 33 5689999999855543221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.+.|+.+|.+.+.+++.++.++ |++++++|||.++++...... .......+.... ...
T Consensus 161 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~----~~~ 221 (266)
T 1xq1_A 161 -------------GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY--DDEFKKVVISRK----PLG 221 (266)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc--CHHHHHHHHhcC----CCC
Confidence 1459999999999999999875 999999999999998754321 011111111111 334
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+++++|+|+++++++... ...| .+++.++
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 254 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPAASYITGQTICVDGG 254 (266)
T ss_dssp --CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred CCcCHHHHHHHHHHHcCccccCccCcEEEEcCC
Confidence 6789999999999998753 3456 4455543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=214.11 Aligned_cols=224 Identities=20% Similarity=0.165 Sum_probs=163.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..........++...+.++.++.+|++|+++++++++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 98 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 98 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999843221111222222224568899999999999888876
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhh-ccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAM-LLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~-~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+. .++||++||..++ .+.+.
T Consensus 99 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~~------------ 166 (274)
T 1ja9_A 99 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPN------------ 166 (274)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCS------------
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCCCC------------
Confidence 78999999996432 22334567899999999999999877521 2699999998555 22211
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC----C-----Ccc-HHHHHHHHcCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI----L-----NFG-AEVILNLINGD 218 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~----~-----~~~-~~~~~~~~~g~ 218 (322)
...|+.+|.+.|.+++.++.++ +++++++|||.++++..... . ... .........+.
T Consensus 167 ----------~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T 1ja9_A 167 ----------HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN 236 (274)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcC
Confidence 1569999999999999999875 89999999999998753210 0 011 12222233333
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
+..++++++|+|++++.++..+. ..| .|+++++
T Consensus 237 ----~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 237 ----PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 55779999999999999997642 345 5666654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=208.87 Aligned_cols=221 Identities=16% Similarity=0.129 Sum_probs=162.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.. .....++...+.++.++.+|++|+++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP---APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC---HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999998765 22233333334568899999999999988887
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 147 (255)
T 2q2v_A 79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTG----------- 147 (255)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCC-----------
Confidence 79999999996432 234456789999999998888876432 25689999999866543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHH---H----HHH-HcCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEV---I----LNL-INGDQ 219 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~---~----~~~-~~g~~ 219 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.++++............ . ..+ ..+.
T Consensus 148 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (255)
T 2q2v_A 148 -----------KAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQ- 215 (255)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTC-
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccC-
Confidence 1569999999999999999884 899999999999998532100000000 0 111 1112
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+++++|+|+++++++..+ ...| .+++.++
T Consensus 216 ---p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 251 (255)
T 2q2v_A 216 ---PSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGG 251 (255)
T ss_dssp ---TTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCC
Confidence 4567899999999999998753 2446 4555543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=209.36 Aligned_cols=219 Identities=20% Similarity=0.193 Sum_probs=165.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.... .++.++++|++|+++++++++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELS-SVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF 117 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH-HHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999865432 2333333323 578999999999998877665
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhh-ccCCCCCCCCccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAM-LLNETPMTPDVVI 147 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~-~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++. +. +.++||++||..+. .+.+.
T Consensus 118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~isS~~~~~~~~~~-------- 188 (293)
T 3rih_A 118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTSSITGPVTGYPG-------- 188 (293)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEECCSBTTTBBCTT--------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEeChhhccCCCCC--------
Confidence 67999999997533 2334567899999999999999985 33 56899999998553 33321
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|+++..... .......+.... +.
T Consensus 189 --------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~ 247 (293)
T 3rih_A 189 --------------WSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM---GEEYISGMARSI----PM 247 (293)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT---CHHHHHHHHTTS----TT
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc---cHHHHHHHHhcC----CC
Confidence 156999999999999999987 489999999999999854321 122333444433 44
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
..+..++|+|+++++++... ..+|. +++.|+
T Consensus 248 ~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG 281 (293)
T 3rih_A 248 GMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGG 281 (293)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 56778999999999999653 45674 455543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=210.75 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=157.2
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
..+.++|+|+||||+|+||++++++|+++|++|+++.++...........+.....++.++.+|++|+++++++++
T Consensus 21 ~~m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 21 QSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp ---CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3344578999999999999999999999999998875443322222222232234678999999999998887776
Q ss_pred ---CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC------CccEEEEecchhhhccCCCCCCC
Q 020747 79 ---GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH------SIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 ---~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+ +.++||++||..++++....
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--- 177 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQ--- 177 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTT---
T ss_pred hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCC---
Confidence 68999999997532 2334567899999999999999987642 24689999998776654311
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
...|+.||++.+.+++.++.++ |+++++++||.|.++...... .......+..+.
T Consensus 178 ------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~-- 235 (272)
T 4e3z_A 178 ------------------YVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG--LPDRAREMAPSV-- 235 (272)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--------------------CC--
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC--ChHHHHHHhhcC--
Confidence 1459999999999999999876 899999999999998643211 111122222222
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+.+++|+|+++++++... ...| .++++++
T Consensus 236 --~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 236 --PMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 4556788999999999999653 3456 4566543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=211.74 Aligned_cols=223 Identities=18% Similarity=0.139 Sum_probs=164.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+.+|++|+++++++++
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVS-AAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999754321 2233333335679999999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc-----CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV-----HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~-----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..+..+.+..
T Consensus 101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~-------- 172 (279)
T 3sju_A 101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYA-------- 172 (279)
T ss_dssp SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTC--------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCC--------
Confidence 68999999997532 233456778999999999999998661 145799999998666543321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCC-------CC-ccHHHHHHHHcC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPI-------LN-FGAEVILNLING 217 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~-------~~-~~~~~~~~~~~g 217 (322)
..|+.||.+.+.+.+.++.+ +|+++++++||.|.++..... .. ........+...
T Consensus 173 --------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (279)
T 3sju_A 173 --------------APYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAK 238 (279)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTT
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhc
Confidence 56999999999999999988 489999999999988742210 00 112222333333
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
. +...+.+++|+|+++++++... ..+|. +++.|+
T Consensus 239 ~----p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 275 (279)
T 3sju_A 239 I----PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGG 275 (279)
T ss_dssp C----TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred C----CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 3 5567889999999999999764 25674 455543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=207.18 Aligned_cols=221 Identities=16% Similarity=0.144 Sum_probs=166.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+|+||||+|+||++++++|+++|++|++++++......+...++.....++.++.+|++|+++++++++
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH 102 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999998876654332223333333335678999999999999887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhh----cCCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAK----VHSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~----~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.. ..+.++||++||..++.+.+..
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 174 (267)
T 4iiu_A 103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQ-------- 174 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTC--------
T ss_pred CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCC--------
Confidence 78999999997532 23445678999999999999998742 1255799999998777654321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.||++.+.+.+.++.++ |+++++++||.|.++..... ........... +..
T Consensus 175 --------------~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~----p~~ 232 (267)
T 4iiu_A 175 --------------VNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME----ESALKEAMSMI----PMK 232 (267)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC----HHHHHHHHHTC----TTC
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc----HHHHHHHHhcC----CCC
Confidence 569999999999999998875 89999999999999875432 23333444433 556
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
.+.+++|+|+++++++... ..+|. ++++|+
T Consensus 233 ~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 6889999999999999753 35664 455544
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=208.96 Aligned_cols=223 Identities=17% Similarity=0.105 Sum_probs=161.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe-CCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR-DPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+|+||||+|+||++++++|+++|++|++++| +.... .....++.....++.++.+|++|+++++++++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEA-NSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998 43211 11222222223568899999999998887776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ + .++||++||..+..+.+.
T Consensus 83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------- 154 (261)
T 1gee_A 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPL-------- 154 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT--------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCC--------
Confidence 78999999996432 2234466789999999999998876541 3 579999999855433221
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
.+.|+.||.+.+.+++.++.++ |++++++|||.++++...... ........+.... +.
T Consensus 155 --------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~----~~ 215 (261)
T 1gee_A 155 --------------FVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVESMI----PM 215 (261)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHTTC----TT
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcc-cChhHHHHHHhcC----CC
Confidence 1569999999999999998875 899999999999998642110 0111222222222 34
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+++++|+|+++++++... ...| .+++.++
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 249 (261)
T 1gee_A 216 GYIGEPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCC
Confidence 56889999999999998753 3456 4455543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=210.41 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=166.7
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++++|++|+++++++++
T Consensus 5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 5 MGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLE-DVAKQVTDTGRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp --CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 444567899999999999999999999999999999999754321 2222232234678999999999999887776
Q ss_pred ----CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ----GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|++||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 84 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 156 (264)
T 3ucx_A 84 KAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAK------- 156 (264)
T ss_dssp HHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCTT-------
T ss_pred HHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCCc-------
Confidence 68999999986421 2334567889999999999999986541 1269999999866654332
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCC--------ccHHHHHHHH
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILN--------FGAEVILNLI 215 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~~~~~ 215 (322)
...|+.||++.+.+.+.++.+ +|+++++++||.|+++....... ..........
T Consensus 157 ---------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (264)
T 3ucx_A 157 ---------------YGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA 221 (264)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh
Confidence 156999999999999999987 58999999999999975322100 0112222233
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+. +...+.+++|+|+++++++... ..+| .+++.++
T Consensus 222 ~~~----p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 260 (264)
T 3ucx_A 222 AGS----DLKRLPTEDEVASAILFMASDLASGITGQALDVNCG 260 (264)
T ss_dssp TTS----SSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccC----CcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 333 5667889999999999999753 3566 4455554
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=215.78 Aligned_cols=222 Identities=19% Similarity=0.113 Sum_probs=155.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----~~d~vi 84 (322)
|+|+||||+||||++++++|+++|++|++++|+.+.... .+.+|++|+++++++++ ++|+||
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~~~D~~~~~~~~~~~~~~~~~~d~vi 67 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--------------DLSTPGGRETAVAAVLDRCGGVLDGLV 67 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------CTTSHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--------------cccCCcccHHHHHHHHHHcCCCccEEE
Confidence 689999999999999999999999999999997644210 15689999998988876 899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC-------CCCCC
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE-------TWFSN 154 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E-------~~~~~ 154 (322)
|+||.... ..++...+++|+.++.++++++.+. .+.++||++||..++.+... ..+..| +.+..
T Consensus 68 ~~Ag~~~~--~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 68 CCAGVGVT--AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA----ELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp ECCCCCTT--SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGG----GCHHHHHHHHTCHHHHHH
T ss_pred ECCCCCCc--chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccccc----ccchhhhhcccchhhhhh
Confidence 99997542 3456889999999999999988764 24589999999955543211 111111 00000
Q ss_pred c-ccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 155 P-VLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 155 ~-~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
. .....+.+.|+.||.++|.+++.++.+ +|++++++|||.++|+......... ......... .++.++++|+
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~ 217 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADP--RYGESTRRF--VAPLGRGSEP 217 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCT--TTHHHHHSC--CCTTSSCBCH
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccch--hhHHHHHHH--HHHhcCCCCH
Confidence 0 000012267999999999999999877 5999999999999998532110000 000111100 0033578999
Q ss_pred HHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 231 RDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 231 ~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
+|+|++++.++.++ ...| .|++++
T Consensus 218 ~dva~~~~~l~~~~~~~~~G~~~~v~g 244 (255)
T 2dkn_A 218 REVAEAIAFLLGPQASFIHGSVLFVDG 244 (255)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHHHHHHhCCCcccceeeEEEecC
Confidence 99999999999875 3455 667764
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=208.17 Aligned_cols=222 Identities=15% Similarity=0.103 Sum_probs=167.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++++|++|+++++++++
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAE-AVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356799999999999999999999999999999998754321 2222222234678999999999998887776
Q ss_pred -CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.++..+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 156 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVR----------- 156 (256)
T ss_dssp SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTT-----------
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCC-----------
Confidence 78999999997543 223456778999999999999998543 24579999999866544332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++...... .......+.... +...+
T Consensus 157 -----------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~----p~~r~ 219 (256)
T 3gaf_A 157 -----------MASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL--TPEIERAMLKHT----PLGRL 219 (256)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC--CHHHHHHHHTTC----TTSSC
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc--CHHHHHHHHhcC----CCCCC
Confidence 1569999999999999999885 899999999999987532211 122233333333 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+++|+|+++++++... ..+| .+++.|+
T Consensus 220 ~~~~dva~~~~~L~s~~~~~itG~~i~vdgG 250 (256)
T 3gaf_A 220 GEAQDIANAALFLCSPAAAWISGQVLTVSGG 250 (256)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHcCCcccCccCCEEEECCC
Confidence 89999999999999753 3456 4566643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=208.22 Aligned_cols=227 Identities=16% Similarity=0.110 Sum_probs=160.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++++..+.......++...+.++.++++|++|+++++++++
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999886655433223333343445678999999999999888776
Q ss_pred -CCCEEEEcccCc-cc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhh-ccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPV-IF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAM-LLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~-~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~-~~~~~~~~~~~~~~E 149 (322)
++|++||+||.. .. ...+.+.+.+++|+.|+.++++++.+.+. .++||++||..+. .+.+.
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 154 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGPG---------- 154 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCSTT----------
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCCC----------
Confidence 689999999864 21 22334577899999999999999988632 2489999998665 22221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||++.+.+.+.++.++ +++++.++||.|.++....... ......+.... +...+
T Consensus 155 ------------~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~----p~~r~ 216 (259)
T 3edm_A 155 ------------ALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTK--PEVRERVAGAT----SLKRE 216 (259)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------CC
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccC--hHHHHHHHhcC----CCCCC
Confidence 1569999999999999999886 4999999999999876432211 11111111111 55677
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecCCCCH
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGSVAQH 259 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~~~~~ 259 (322)
.+++|+|+++++++... ..+| .+++.|+...+
T Consensus 217 ~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 217 GSSEDVAGLVAFLASDDAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEECCCcCCC
Confidence 89999999999999754 3467 45666655443
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=207.44 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=159.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+... .+...++. + .++++|++|+++++++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~~~g 76 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG--KEVAEAIG----G-AFFQVDLEDERERVRFVEEAAYALG 76 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH--HHHHHHHT----C-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH--HHHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999999998654 22222221 3 788999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 77 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 145 (256)
T 2d1y_A 77 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQE----------- 145 (256)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCC-----------
Confidence 68999999996532 122345689999999999999988653 25679999999866554322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++...... .........+.... +.
T Consensus 146 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~~ 210 (256)
T 2d1y_A 146 -----------NAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLH----AL 210 (256)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTS----TT
T ss_pred -----------ChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcC----CC
Confidence 1569999999999999999874 899999999999886421100 00000011111211 45
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.++++++|+|+++++++..+ ...| .+++.++
T Consensus 211 ~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG 244 (256)
T 2d1y_A 211 RRLGKPEEVAEAVLFLASEKASFITGAILPVDGG 244 (256)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 67899999999999998764 3456 5566543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=205.65 Aligned_cols=222 Identities=15% Similarity=0.115 Sum_probs=154.8
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
...+++|+++||||+|+||++++++|+++|++|++++|+..+...+.+.+ .+.++..+++|++|+++++++++
T Consensus 2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (249)
T 2ew8_A 2 TQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN---LGRRVLTVKCDVSQPGDVEAFGKQVIS 78 (249)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999762211111211 23568899999999998887754
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 150 (249)
T 2ew8_A 79 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEA-------- 150 (249)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSS--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCC--------
Confidence 78999999996432 233456778999999999999885432 15679999999865543321
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCC-CCCCccHHHHHHHHcCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQ-PILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~-~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++... ............+ . . +
T Consensus 151 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~-~-~ 210 (249)
T 2ew8_A 151 --------------YTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNM----L-Q-A 210 (249)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CT----T-S-S
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhhHHHHh----h-C-c
Confidence 1569999999999999999874 899999999999998643 1100000000000 0 1 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...+.+++|+|+++++++... ...|.+ .+.++
T Consensus 211 ~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG 245 (249)
T 2ew8_A 211 IPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGG 245 (249)
T ss_dssp SCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence 345789999999999999753 345644 55543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=209.95 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=167.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+...............+.++.++++|++|+++++++++
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 124 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG 124 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999999999999999976432222222223335678999999999998887776
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+ ..++||++||..++.+.+..
T Consensus 125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------- 193 (291)
T 3ijr_A 125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETL----------- 193 (291)
T ss_dssp SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTTC-----------
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCCC-----------
Confidence 68999999996432 2344577899999999999999998853 23589999999776554321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.||.+.+.+.+.++.++ |+++++++||.|+++...... .......+..+. +...+.
T Consensus 194 -----------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~----p~~r~~ 256 (291)
T 3ijr_A 194 -----------IDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF--DEKKVSQFGSNV----PMQRPG 256 (291)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS--CHHHHHHTTTTS----TTSSCB
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC--CHHHHHHHHccC----CCCCCc
Confidence 569999999999999999885 899999999999998532111 111222222222 566788
Q ss_pred eHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 229 EIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+++|+|+++++++... ..+|.. ++.|+
T Consensus 257 ~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 286 (291)
T 3ijr_A 257 QPYELAPAYVYLASSDSSYVTGQMIHVNGG 286 (291)
T ss_dssp CGGGTHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CHHHHHHHHHHHhCCccCCCcCCEEEECCC
Confidence 9999999999999653 356744 55543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=207.80 Aligned_cols=221 Identities=16% Similarity=0.134 Sum_probs=157.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.++|+++||||+|+||++++++|+++|++|++++|+.................++.++++|++|+++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4568999999999999999999999999999998875432221112222224579999999999999888776
Q ss_pred CCCEEEEcccC--cc-----cCCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 GCDGVFHTASP--VI-----FLSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ~~d~vih~A~~--~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||. .. ....+.+.+.+++|+.++.++++++. +. +.++||++||.... .....
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~-~~~~~------- 155 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGAD-SAPGW------- 155 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGG-GCCCC-------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhc-ccCCC-------
Confidence 78999999993 21 12334567889999999999999984 43 56799999997332 11110
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...+.|+.||++.+.+++.++.+ .|+++++++||.|+++..... ............ +.
T Consensus 156 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~ 216 (264)
T 3i4f_A 156 ------------IYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT---IQEARQLKEHNT----PI 216 (264)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC---HHHHHHC-----------
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc---cHHHHHHHhhcC----CC
Confidence 01156999999999999999988 589999999999999875432 111111111111 45
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
..+.+++|+|+++++++... ..+| .++++|
T Consensus 217 ~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdG 249 (264)
T 3i4f_A 217 GRSGTGEDIARTISFLCEDDSDMITGTIIEVTG 249 (264)
T ss_dssp -CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred CCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcC
Confidence 56789999999999999754 3456 445554
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=206.93 Aligned_cols=224 Identities=17% Similarity=0.140 Sum_probs=163.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-------h----hhhhhccCCCCcEEEEEccCCCccchH
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-------T----EHLRELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
+++|+++||||+|+||++++++|+++|++|++++|++.... . +....+...+.++.++++|++|+++++
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 87 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE 87 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 56799999999999999999999999999999999743210 1 111122223467899999999999988
Q ss_pred HhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCC
Q 020747 75 SAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNET 139 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~ 139 (322)
++++ ++|++||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 167 (281)
T 3s55_A 88 SFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFA 167 (281)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCTT
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCCC
Confidence 8776 78999999997532 233456788999999999999997542 14579999999866544332
Q ss_pred CCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC----------Cc
Q 020747 140 PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL----------NF 206 (322)
Q Consensus 140 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~----------~~ 206 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|+++...... ..
T Consensus 168 ----------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~ 225 (281)
T 3s55_A 168 ----------------------QASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKP 225 (281)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------C
T ss_pred ----------------------CchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhcccccccccc
Confidence 1569999999999999999874 899999999999998754210 00
Q ss_pred cHHHHHHH--HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 207 GAEVILNL--INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 207 ~~~~~~~~--~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
........ ..+. ...++.+++|+|+++++++... ..+| .+++.++
T Consensus 226 ~~~~~~~~~~~~~~----~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG 275 (281)
T 3s55_A 226 TLKDVESVFASLHL----QYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAG 275 (281)
T ss_dssp CHHHHHHHHHHHCS----SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred chhHHHHHHHhhhc----cCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 00000110 1111 3378899999999999999764 3456 4556543
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=203.47 Aligned_cols=206 Identities=22% Similarity=0.182 Sum_probs=158.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------CCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------GCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~d 81 (322)
+|+|+||||+|+||++++++|+++|++|++++|+.. . .++.++++|++|+++++++++ ++|
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d 68 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G------------EDLIYVEGDVTREEDVRRAVARAQEEAPLF 68 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S------------SSSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c------------cceEEEeCCCCCHHHHHHHHHHHHhhCCce
Confidence 489999999999999999999999999999999764 1 134789999999999988887 789
Q ss_pred EEEEcccCcccC-----CCC----CcchhhhHHHHHHHHHHHHHhhcCC---------ccEEEEecchhhhccCCCCCCC
Q 020747 82 GVFHTASPVIFL-----SDN----PQADIVDPAVMGTLNVLRSCAKVHS---------IKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 82 ~vih~A~~~~~~-----~~~----~~~~~~~~N~~~~~~l~~~~~~~~~---------~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
+|||+||..... ... .+.+.+++|+.++.++++++.+.+. .++||++||..++.+.+.
T Consensus 69 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~---- 144 (242)
T 1uay_A 69 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIG---- 144 (242)
T ss_dssp EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTT----
T ss_pred EEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCC----
Confidence 999999964321 111 5578899999999999999876421 139999999866544321
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
...|+.||.+.+.+++.++.+. |++++++|||.++++..... .......+..+.
T Consensus 145 ------------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~-- 201 (242)
T 1uay_A 145 ------------------QAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL---PEKAKASLAAQV-- 201 (242)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS---CHHHHHHHHTTC--
T ss_pred ------------------CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc---chhHHHHHHhhC--
Confidence 1569999999999999998874 99999999999999864322 122222333332
Q ss_pred CCCC-CcceeHHHHHHHHHHhhcCCCCCc-cEEEecC
Q 020747 221 FAFP-YIFVEIRDVVYAHIRALEVPKASG-RYLLAGS 255 (322)
Q Consensus 221 ~~~~-~~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~~ 255 (322)
+. ..+++++|+|+++++++.+....| .+++.++
T Consensus 202 --~~~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG 236 (242)
T 1uay_A 202 --PFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGA 236 (242)
T ss_dssp --CSSCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred --CCcccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCC
Confidence 33 567899999999999998765567 5566543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=207.85 Aligned_cols=221 Identities=16% Similarity=0.117 Sum_probs=165.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 79 (322)
+++|+++||||+|+||++++++|+++|++|++++|... ..+...++.....++..+++|++|+++++++.+ +
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~ 106 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG--VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRR 106 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH--HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH--HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence 56799999999999999999999999999999996532 123333343445678999999999998876654 7
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~------------ 174 (273)
T 3uf0_A 107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRN------------ 174 (273)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS------------
T ss_pred CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCC------------
Confidence 8999999997532 234456789999999999999988542 15579999999866654332
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.||++.+.+.+.++.+ .|+++++++||.|.++...... ........+..+. +...+.
T Consensus 175 ----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~----p~~r~~ 239 (273)
T 3uf0_A 175 ----------VAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALR-ADDERAAEITARI----PAGRWA 239 (273)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TSHHHHHHHHHHS----TTSSCB
T ss_pred ----------ChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcc-cCHHHHHHHHhcC----CCCCCC
Confidence 156999999999999999988 5899999999999998643211 1112222333332 556788
Q ss_pred eHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 229 EIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
+++|+|+++++++... ..+|. +++.|+
T Consensus 240 ~pedva~~v~~L~s~~a~~itG~~i~vdGG 269 (273)
T 3uf0_A 240 TPEDMVGPAVFLASDAASYVHGQVLAVDGG 269 (273)
T ss_dssp CGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 9999999999999753 45674 455543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=202.41 Aligned_cols=217 Identities=18% Similarity=0.170 Sum_probs=165.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +....+ ..+...+++|++|+++++++++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQ-AISDYL---GDNGKGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---cccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999999999999998754321 111222 2357889999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..+..+.+..
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~---------- 152 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQ---------- 152 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCC----------
Confidence 78999999996532 234566789999999999999998653 145799999998777654321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+.+.++.++ |+++++++||.|.++..... ............ +...+
T Consensus 153 ------------~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~----p~~r~ 213 (248)
T 3op4_A 153 ------------ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL---NDEQRTATLAQV----PAGRL 213 (248)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS---CHHHHHHHHHTC----TTCSC
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc---CHHHHHHHHhcC----CCCCC
Confidence 569999999999999999874 89999999999999865432 122222333333 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
.+++|+|+++++++... ..+|.. ++.++
T Consensus 214 ~~p~dva~~v~~L~s~~~~~itG~~i~vdgG 244 (248)
T 3op4_A 214 GDPREIASAVAFLASPEAAYITGETLHVNGG 244 (248)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence 89999999999998753 345744 55543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=211.03 Aligned_cols=227 Identities=18% Similarity=0.160 Sum_probs=163.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc--------Ch----hhhhhccCCCCcEEEEEccCCCccch
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP--------KT----EHLRELDGATERLHLFKANLLEEGSF 73 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~ 73 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.+.. .. +....+...+.++..+++|++|++++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 5679999999999999999999999999999999853211 11 11122233356789999999999998
Q ss_pred HHhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccC
Q 020747 74 DSAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLN 137 (322)
Q Consensus 74 ~~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~ 137 (322)
+++++ ++|++||+||.... ...+.+++.+++|+.|+.++++++.+.+ + .++||++||..++.+.
T Consensus 93 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 172 (280)
T 3pgx_A 93 RELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKAT 172 (280)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCC
Confidence 88776 68999999997532 2344567889999999999999986532 2 4689999998666543
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHH
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNL 214 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~ 214 (322)
+. ...|+.||.+.+.+.+.++.+ +|+++++++||.|+++..... .....+...
T Consensus 173 ~~----------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~ 228 (280)
T 3pgx_A 173 PG----------------------NGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE--AMMEIFARH 228 (280)
T ss_dssp TT----------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH--HHHHHHHHC
T ss_pred CC----------------------chhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh--hhhhhhhcC
Confidence 32 156999999999999999987 589999999999999874321 001111110
Q ss_pred --HcCC-CCCC-CCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecCC
Q 020747 215 --INGD-QSFA-FPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGSV 256 (322)
Q Consensus 215 --~~g~-~~~~-~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~~ 256 (322)
.... ...+ ....+.+++|+|+++++++... ..+| .+++.|+.
T Consensus 229 ~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 229 PSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp GGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred chhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 0000 1222 2225899999999999999754 3556 44565543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=203.39 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=161.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+......+...++...+.++..+++|++|+++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999999843221112222222223568899999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..+.++.+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 150 (246)
T 2uvd_A 82 QVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPG----------- 150 (246)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCC-----------
Confidence 78999999996432 233456789999999988888877543 15689999999866654332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++........ ....+.... +...+
T Consensus 151 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~~~----p~~~~ 212 (246)
T 2uvd_A 151 -----------QANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDEN---IKAEMLKLI----PAAQF 212 (246)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTT---HHHHHHHTC----TTCSC
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHH---HHHHHHhcC----CCCCC
Confidence 1569999999999999988764 89999999999998864332111 112222222 34568
Q ss_pred eeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
++++|+|+++++++..+ ...|. +.+.|+
T Consensus 213 ~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 243 (246)
T 2uvd_A 213 GEAQDIANAVTFFASDQSKYITGQTLNVDGG 243 (246)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCEEEECcC
Confidence 89999999999999753 34564 455543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=203.55 Aligned_cols=222 Identities=17% Similarity=0.112 Sum_probs=165.5
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++++..........++...+.++..+++|++|+++++++++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999999999999987765332222223333335678999999999999888776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|++||+||.... ...+.+++.+++|+.|+.++++++.+.+ ..++||++||..+..+...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~------------ 175 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWP------------ 175 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCST------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCC------------
Confidence 78999999996432 2344577899999999999999998763 3469999999744432111
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
....|+.||++.+.+.+.++.++ |+++++++||.|.++........ ........ +...+.
T Consensus 176 ---------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~----~~~~~~~~----~~~r~~ 238 (271)
T 3v2g_A 176 ---------GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDH----AEAQRERI----ATGSYG 238 (271)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSS----HHHHHHTC----TTSSCB
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchh----HHHHHhcC----CCCCCC
Confidence 01569999999999999999885 89999999999999875432221 12222222 445678
Q ss_pred eHHHHHHHHHHhhcC--CCCCccE-EEecC
Q 020747 229 EIRDVVYAHIRALEV--PKASGRY-LLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~--~~~~g~~-~~~~~ 255 (322)
+++|+|+++++++.. ...+|.. .+.|+
T Consensus 239 ~pedvA~~v~fL~s~~~~~itG~~i~vdGG 268 (271)
T 3v2g_A 239 EPQDIAGLVAWLAGPQGKFVTGASLTIDGG 268 (271)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCcccCCccCCEEEeCcC
Confidence 899999999999864 3456744 55443
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=206.20 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=162.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh--------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-------- 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------- 77 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++.+|++|++++++++
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN-DCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998753321 122222222456889999999999888777
Q ss_pred CCCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 78 DGCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 78 ~~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.++|+|||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 155 (260)
T 2ae2_A 86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPY---------- 155 (260)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCC----------
Confidence 469999999996432 233456778999999999999998542 25689999999855543221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHcCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--GAEVILNLINGDQSFAFP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++........ ....+..+.... +.
T Consensus 156 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----~~ 219 (260)
T 2ae2_A 156 ------------EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC----AL 219 (260)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS----TT
T ss_pred ------------cchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcC----CC
Confidence 1569999999999999999875 89999999999998753211110 011111222222 45
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+++++|+|+++++++... ...| .+.+.++
T Consensus 220 ~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 253 (260)
T 2ae2_A 220 RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 253 (260)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 66889999999999998753 3456 4455543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=202.92 Aligned_cols=228 Identities=18% Similarity=0.095 Sum_probs=171.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++++|+++||||++.||+++++.|+++|.+|++.+|+..... +..+++...+.++..+++|++|+++++++++
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~-~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLN-QIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999999999999764332 3333444445679999999999999887765
Q ss_pred -CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||... +.+.+.|++.+++|+.|+.++.+++.+.+ +.++||++||..+..+.+..
T Consensus 83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~-------- 154 (254)
T 4fn4_A 83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAG-------- 154 (254)
T ss_dssp SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSC--------
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCC--------
Confidence 6899999999532 23455688999999999999999987642 45799999999776554431
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.||.+...+.+.++.++ |++++.|.||.|-+|....................+ ...
T Consensus 155 --------------~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~---~~~ 217 (254)
T 4fn4_A 155 --------------APYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS---LSS 217 (254)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT---TCC
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC---CCC
Confidence 569999999999999999885 899999999999988644332222222222211111 334
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccEEEecCCCC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRYLLAGSVAQ 258 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 258 (322)
.+..++|+|.++++++... ..+|..+..++.+|
T Consensus 218 R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 218 RLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 5678999999999999653 45776655554443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=216.42 Aligned_cols=224 Identities=16% Similarity=0.182 Sum_probs=158.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCC
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
||+.+.|+++|+||||||+||++++++|+++|++|++++|+.+.. ...+..+. ..+++++.+|++|++++.++++++
T Consensus 4 ~m~~~~m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~-~~~~~~l~--~~~v~~v~~Dl~d~~~l~~a~~~~ 80 (318)
T 2r6j_A 4 GMEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSK-TTLLDEFQ--SLGAIIVKGELDEHEKLVELMKKV 80 (318)
T ss_dssp -----CCCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSC-HHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTC
T ss_pred cccccCCCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCch-hhHHHHhh--cCCCEEEEecCCCHHHHHHHHcCC
Confidence 455444456899999999999999999999999999999987522 12222221 135789999999999999999999
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|+|||+|+... +.++.+++++|++. + +++||+ |+. +... +|..+..|.
T Consensus 81 d~vi~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~~----g~~~--------~~~~~~~p~--- 129 (318)
T 2r6j_A 81 DVVISALAFPQ--------------ILDQFKILEAIKVA-GNIKRFLP-SDF----GVEE--------DRINALPPF--- 129 (318)
T ss_dssp SEEEECCCGGG--------------STTHHHHHHHHHHH-CCCCEEEC-SCC----SSCT--------TTCCCCHHH---
T ss_pred CEEEECCchhh--------------hHHHHHHHHHHHhc-CCCCEEEe-ecc----ccCc--------ccccCCCCc---
Confidence 99999997531 44678999999998 7 899984 432 2211 222222221
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVV 234 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a 234 (322)
.+.| .+|..+|++++ +.+++++++||+.+++... ..++.....+. .+++ ..++++|++|++
T Consensus 130 --~~~y-~sK~~~e~~~~----~~~~~~~~lr~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva 195 (318)
T 2r6j_A 130 --EALI-ERKRMIRRAIE----EANIPYTYVSANCFASYFI-------NYLLRPYDPKDEITVYGTGEAKFAMNYEQDIG 195 (318)
T ss_dssp --HHHH-HHHHHHHHHHH----HTTCCBEEEECCEEHHHHH-------HHHHCTTCCCSEEEEETTSCCEEEEECHHHHH
T ss_pred --chhH-HHHHHHHHHHH----hcCCCeEEEEcceehhhhh-------hhhccccCCCCceEEecCCCceeeEeeHHHHH
Confidence 1458 99999999885 4689999999998776421 11111111222 1222 678999999999
Q ss_pred HHHHHhhcCCCC-CccEEE-e-cCCCCHHHHHHHHHHhCCC
Q 020747 235 YAHIRALEVPKA-SGRYLL-A-GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 235 ~~~~~~~~~~~~-~g~~~~-~-~~~~~~~e~~~~i~~~~~~ 272 (322)
++++.++.++.. ++.+++ + ++.+|+.|+++.+.+.+|.
T Consensus 196 ~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 236 (318)
T 2r6j_A 196 LYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK 236 (318)
T ss_dssp HHHHHHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCccccCeEEEecCCCCccCHHHHHHHHHHHhCC
Confidence 999999987653 345544 3 4789999999999998864
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=210.33 Aligned_cols=223 Identities=19% Similarity=0.153 Sum_probs=162.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+.+|++|+++++++++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR-TTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999753321 1222222223568899999999998887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc--C---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV--H---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~--~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+. + +.++||++||..++++.+.
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~--------- 169 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVH--------- 169 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTT---------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCC---------
Confidence 68999999996432 223446789999999999999998764 1 4579999999866554322
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--c------HHHHHHHHcC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--G------AEVILNLING 217 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--~------~~~~~~~~~g 217 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.++++........ . ......+..+
T Consensus 170 -------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (277)
T 2rhc_B 170 -------------AAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITAR 236 (277)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhc
Confidence 1569999999999999998874 89999999999998753210000 0 0111111111
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
. +...+++++|+|+++++++..+ ...| .+++.++
T Consensus 237 ~----p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 237 V----PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp S----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 1 4567899999999999999764 3456 4566554
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=196.26 Aligned_cols=216 Identities=14% Similarity=0.055 Sum_probs=166.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCD 81 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 81 (322)
.+++|+++||||++.||+++++.|+++|++|++.+|+...... ....++..+++|++|+++++++++ ++|
T Consensus 8 lf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iD 80 (242)
T 4b79_A 8 IYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-------PRHPRIRREELDITDSQRLQRLFEALPRLD 80 (242)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-------CCCTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-------hhcCCeEEEEecCCCHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999998654321 123578999999999999988876 689
Q ss_pred EEEEcccCccc---CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 82 GVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 82 ~vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
++||+||...+ .+.+.|++.+++|+.|+..+.+++.+.+ +..+||++||..+..+.+..
T Consensus 81 iLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~---------------- 144 (242)
T 4b79_A 81 VLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADR---------------- 144 (242)
T ss_dssp EEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSSC----------------
T ss_pred EEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCCC----------------
Confidence 99999996533 3455688999999999999999887642 23699999999776554431
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDV 233 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~ 233 (322)
..|+.||.+...+.+.++.++ |++++.|.||.|..|..... ........++.... +...+..++|+
T Consensus 145 ------~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~-~~~~~~~~~~~~~~----PlgR~g~peei 213 (242)
T 4b79_A 145 ------PAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGL-KADVEATRRIMQRT----PLARWGEAPEV 213 (242)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC------CCCHHHHHHHHHTC----TTCSCBCHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcc-cCCHHHHHHHHhcC----CCCCCcCHHHH
Confidence 569999999999999999875 89999999999999864432 22233344444443 55667889999
Q ss_pred HHHHHHhhcCC--CCCccEEEec
Q 020747 234 VYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 234 a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
|+++++++... ..+|..+..+
T Consensus 214 A~~v~fLaSd~a~~iTG~~l~VD 236 (242)
T 4b79_A 214 ASAAAFLCGPGASFVTGAVLAVD 236 (242)
T ss_dssp HHHHHHHTSGGGTTCCSCEEEES
T ss_pred HHHHHHHhCchhcCccCceEEEC
Confidence 99999999653 4577554443
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=199.91 Aligned_cols=214 Identities=14% Similarity=0.069 Sum_probs=165.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+|+||||++.||+++++.|+++|++|++.+|++. .+.++.....++..+++|++|+++++++++ ++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK-----RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999998753 233333335678999999999998887765 68
Q ss_pred CEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 81 DGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 81 d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
|++||+||... +...+.|++.+++|+.++..+.+++.+.+ +..++|++||..+..+.+..
T Consensus 77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~~~------------- 143 (247)
T 3ged_A 77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDS------------- 143 (247)
T ss_dssp CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCTTC-------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCCCC-------------
Confidence 99999998643 23455688999999999999999887642 33799999999776554331
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 231 (322)
..|+.||.+...+.+.++.++ +++++.|.||.|-.+...... ....... +...+..++
T Consensus 144 ---------~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~-------~~~~~~~----Pl~R~g~pe 203 (247)
T 3ged_A 144 ---------EAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFT-------QEDCAAI----PAGKVGTPK 203 (247)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CC-------HHHHHTS----TTSSCBCHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHH-------HHHHhcC----CCCCCcCHH
Confidence 569999999999999999886 899999999999876543211 1222222 445677899
Q ss_pred HHHHHHHHhhcCCCCCccEEEecCCCCH
Q 020747 232 DVVYAHIRALEVPKASGRYLLAGSVAQH 259 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~~~~~~~~ 259 (322)
|+|+++++++.....+|..+..++.+|.
T Consensus 204 diA~~v~fL~s~~~iTG~~i~VDGG~s~ 231 (247)
T 3ged_A 204 DISNMVLFLCQQDFITGETIIVDGGMSK 231 (247)
T ss_dssp HHHHHHHHHHHCSSCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHhCCCCCCCeEEECcCHHH
Confidence 9999999999877778877655555443
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=205.17 Aligned_cols=212 Identities=16% Similarity=0.095 Sum_probs=155.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +.+.. .++.++.+|++|+++++++++
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV-TELRQ-----AGAVALYGDFSCETGIMAFIDLLKTQTS 98 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH-HHHHH-----HTCEEEECCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHh-----cCCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999875421 22222 136889999999998887775
Q ss_pred CCCEEEEcccCcccC----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIFL----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||..... ..+.+...+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------------ 166 (260)
T 3gem_A 99 SLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSK------------ 166 (260)
T ss_dssp CCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSS------------
T ss_pred CCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCC------------
Confidence 689999999975331 12335578999999999999998653 24579999999866654332
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.||++.+.+.+.++.++ ++++++++||.+.++..... .......... ....+..
T Consensus 167 ----------~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~-----~~~~~~~~~~----p~~r~~~ 227 (260)
T 3gem_A 167 ----------HIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA-----AYRANALAKS----ALGIEPG 227 (260)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------C----CSCCCCC
T ss_pred ----------cHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH-----HHHHHHHhcC----CCCCCCC
Confidence 1569999999999999999886 59999999999988753211 1111222222 4455678
Q ss_pred HHHHHHHHHHhhcCCCCCcc-EEEec
Q 020747 230 IRDVVYAHIRALEVPKASGR-YLLAG 254 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g~-~~~~~ 254 (322)
++|+|++++++++....+|. +++.|
T Consensus 228 ~edva~~v~~L~~~~~itG~~i~vdG 253 (260)
T 3gem_A 228 AEVIYQSLRYLLDSTYVTGTTLTVNG 253 (260)
T ss_dssp THHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEECC
Confidence 99999999999987777784 45554
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=207.07 Aligned_cols=229 Identities=19% Similarity=0.092 Sum_probs=162.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+++|++|+++++++++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVE-EVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999998764321 2233333345678999999999998887776
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..+......
T Consensus 105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~---------- 174 (283)
T 3v8b_A 105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTT---------- 174 (283)
T ss_dssp CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCS----------
T ss_pred CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCC----------
Confidence 68999999996421 223346788999999999999998432 15579999999855431111
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~ 224 (322)
+ ....|+.||++.+.+.+.++.++ |+++++++||.|.++.................... ...+ ..
T Consensus 175 -----~-----~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 244 (283)
T 3v8b_A 175 -----P-----GATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITD 244 (283)
T ss_dssp -----T-----TCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGT
T ss_pred -----C-----CchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCcccc
Confidence 0 01569999999999999999884 89999999999999875432211111000000000 1111 22
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
..+.+++|+|+++++++... ..+|.. ++.|+
T Consensus 245 ~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 245 GQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278 (283)
T ss_dssp TCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence 56789999999999999753 356755 44443
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=204.64 Aligned_cols=216 Identities=20% Similarity=0.183 Sum_probs=160.0
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|+..+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+++|++|+++++++++
T Consensus 1 M~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 76 (260)
T 1nff_A 1 MSGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK-AMAAEL---ADAARYVHLDVTQPAQWKAAVDTAV 76 (260)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHT---GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---hcCceEEEecCCCHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999998753321 111222 1347889999999999988877
Q ss_pred ----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 77 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 149 (260)
T 1nff_A 77 TAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVA------- 149 (260)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCC-------
Confidence 79999999996432 223356779999999998877776542 15679999999866543321
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.+ +|++++++|||.++++... ... . . .... +
T Consensus 150 ---------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~~~-~----~-~~~~----~ 202 (260)
T 1nff_A 150 ---------------CHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--WVP-E----D-IFQT----A 202 (260)
T ss_dssp ---------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--TSC-T----T-CSCC----S
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--cch-h----h-HHhC----c
Confidence 156999999999999999987 5999999999999998643 110 0 0 0011 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
...+.+++|+|+++++++... ...| .+++.++
T Consensus 203 ~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG 237 (260)
T 1nff_A 203 LGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237 (260)
T ss_dssp SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 456789999999999998753 2346 5566544
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=203.48 Aligned_cols=216 Identities=18% Similarity=0.155 Sum_probs=160.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++.+|++|+++++++++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE-AQAKKL---GNNCVFAPADVTSEKDVQTALALAKGKFG 85 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHH-HHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 45789999999999999999999999999999999865432 222222 3468999999999999988877
Q ss_pred CCCEEEEcccCccc-----------CCCCCcchhhhHHHHHHHHHHHHHhhcC---------CccEEEEecchhhhccCC
Q 020747 79 GCDGVFHTASPVIF-----------LSDNPQADIVDPAVMGTLNVLRSCAKVH---------SIKRVVLTSSIGAMLLNE 138 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~i~~SS~~~~~~~~ 138 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..++.+.+
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~ 165 (265)
T 2o23_A 86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQV 165 (265)
T ss_dssp CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCT
T ss_pred CCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCC
Confidence 79999999996532 1223466789999999999999987652 457899999986655432
Q ss_pred CCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHH
Q 020747 139 TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215 (322)
Q Consensus 139 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~ 215 (322)
. ...|+.||.+.+.+++.++.+. |+++++++||.+.++....... .....+.
T Consensus 166 ~----------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~ 220 (265)
T 2o23_A 166 G----------------------QAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---KVCNFLA 220 (265)
T ss_dssp T----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CHHH
T ss_pred C----------------------CchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCH---HHHHHHH
Confidence 2 1569999999999999998874 8999999999999886432111 0011111
Q ss_pred cCCCCCCCC-CcceeHHHHHHHHHHhhcCCCCCcc-EEEec
Q 020747 216 NGDQSFAFP-YIFVEIRDVVYAHIRALEVPKASGR-YLLAG 254 (322)
Q Consensus 216 ~g~~~~~~~-~~~i~~~D~a~~~~~~~~~~~~~g~-~~~~~ 254 (322)
... +. ..+++++|+|+++++++++....|. +.+.+
T Consensus 221 ~~~----~~~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdg 257 (265)
T 2o23_A 221 SQV----PFPSRLGDPAEYAHLVQAIIENPFLNGEVIRLDG 257 (265)
T ss_dssp HTC----SSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred HcC----CCcCCCCCHHHHHHHHHHHhhcCccCceEEEECC
Confidence 111 22 5678999999999999987766774 45554
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=208.24 Aligned_cols=224 Identities=16% Similarity=0.097 Sum_probs=157.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..........++... +.++.++.+|++|+++++++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 81 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999987533011111222111 2468899999999999887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 151 (260)
T 1x1t_A 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASAN---------- 151 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCC----------
Confidence 68999999996432 2334567899999999999999986531 4579999999866544321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCcc--------HHHHHHH-HcC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFG--------AEVILNL-ING 217 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~--------~~~~~~~-~~g 217 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++......... ......+ ...
T Consensus 152 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T 1x1t_A 152 ------------KSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHH
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhcc
Confidence 1569999999999999999875 899999999999998643211100 0001111 111
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
. +...+.+++|+|+++++++... ...| .+++.++
T Consensus 220 ~----p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG 256 (260)
T 1x1t_A 220 Q----PSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp C----TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C----CCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 1 4456889999999999999753 3456 4455543
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-28 Score=206.17 Aligned_cols=220 Identities=17% Similarity=0.104 Sum_probs=161.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ....++ ..++..+++|++|+++++++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~d~~~v~~~~~~~~~~~g 85 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQ-AVVAGL---ENGGFAVEVDVTKRASVDAAMQKAIDALG 85 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTC---TTCCEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHH---hcCCeEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999998753221 111122 1257889999999999888877
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ + .++||++||..+..+.+.
T Consensus 86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 155 (263)
T 3ak4_A 86 GFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPL---------- 155 (263)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC----------
Confidence 79999999996432 2334567899999999999999887641 3 579999999855443221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC----c----cHHHHHHHHcCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN----F----GAEVILNLINGD 218 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~----~----~~~~~~~~~~g~ 218 (322)
...|+.||.+.+.+.+.++.++ |++++++|||.++++....... . .......+....
T Consensus 156 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (263)
T 3ak4_A 156 ------------LAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT 223 (263)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcC
Confidence 1569999999999999998875 9999999999999975321000 0 011111222222
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+++++|+|+++++++..+ ...| .+++.++
T Consensus 224 ----p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 259 (263)
T 3ak4_A 224 ----PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGG 259 (263)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcC
Confidence 4566899999999999999764 3456 5566544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=208.22 Aligned_cols=223 Identities=17% Similarity=0.104 Sum_probs=165.7
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.....++..+.+|++|+++++++++
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAE-GIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 33466799999999999999999999999999999999754321 1112222223567889999999999887776
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... ...+.++..+++|+.|+.++++++.+.+ +.++||++||..++.+.+.
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 173 (270)
T 3ftp_A 102 EFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPG-------- 173 (270)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT--------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCC--------
Confidence 68999999996432 2334567899999999999999986431 4468999999877665432
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++..... .......+.... +.
T Consensus 174 --------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~----p~ 232 (270)
T 3ftp_A 174 --------------QVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL---PQEQQTALKTQI----PL 232 (270)
T ss_dssp --------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS---CHHHHHHHHTTC----TT
T ss_pred --------------chhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc---CHHHHHHHHhcC----CC
Confidence 1569999999999999999874 89999999999998753221 112222233333 55
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+.+++|+|+++++++... ..+| .+++.++
T Consensus 233 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 266 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGG 266 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCC
Confidence 67889999999999998643 3567 4455543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=204.68 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=158.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh--------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-------- 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------- 77 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+.+|++|++++++++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD-ECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999753321 122222222456889999999999888776
Q ss_pred CCCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 78 DGCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 78 ~~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.++|++||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~---------- 167 (273)
T 1ae1_A 98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPS---------- 167 (273)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTT----------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCC----------
Confidence 468999999996432 223356778899999999999998542 14579999999865543221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc---cHHHHHHHHcCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF---GAEVILNLINGDQSFAF 223 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~---~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.++++........ .......+.... +
T Consensus 168 ------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----p 231 (273)
T 1ae1_A 168 ------------VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT----P 231 (273)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS----T
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcC----C
Confidence 1569999999999999999875 99999999999999864321110 111222222222 4
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...+.+++|+|+++++++... ...|.. .+.|+
T Consensus 232 ~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 266 (273)
T 1ae1_A 232 MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGG 266 (273)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCC
Confidence 456789999999999998653 345644 55543
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=209.75 Aligned_cols=224 Identities=16% Similarity=0.103 Sum_probs=165.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++. ..+.++.++++|++|+++++++++
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVL-TAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999764322 1122221 113578999999999998887776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..+..+....
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 174 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQ-------- 174 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTC--------
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCc--------
Confidence 68999999995322 3345677899999999999999986532 34699999998776654321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.||++.+.+.+.++.++ |+++++++||.|.++.................... +..
T Consensus 175 --------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----p~~ 236 (277)
T 4fc7_A 175 --------------VHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTAS----PLQ 236 (277)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTS----TTS
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccC----CCC
Confidence 569999999999999999885 89999999999998742111111122233333333 556
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
.+.+++|+|+++++++... ..+|.. ++.|+
T Consensus 237 r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG 269 (277)
T 4fc7_A 237 RLGNKTEIAHSVLYLASPLASYVTGAVLVADGG 269 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHcCCccCCcCCCEEEECCC
Confidence 7889999999999999753 456744 55543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-28 Score=206.07 Aligned_cols=221 Identities=17% Similarity=0.092 Sum_probs=161.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.+... +...++...+.++..+.+|++|+++++++++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVD-RTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999753321 1222222224568899999999998887776
Q ss_pred CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||... ....+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 160 (260)
T 2zat_A 91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPN---------- 160 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCC----------
Confidence 7999999999642 1233446788999999999999997642 25689999999855543221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++....... .......+..+. +..+
T Consensus 161 ------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~----~~~~ 223 (260)
T 2zat_A 161 ------------LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM-DKARKEYMKESL----RIRR 223 (260)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS-SHHHHHHHHHHH----TCSS
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc-ChHHHHHHHhcC----CCCC
Confidence 1569999999999999999875 8999999999999875321000 011111111111 4567
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 227 FVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
+.+++|+|+++++++..+ ...| .+++.+
T Consensus 224 ~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg 254 (260)
T 2zat_A 224 LGNPEDCAGIVSFLCSEDASYITGETVVVGG 254 (260)
T ss_dssp CBCGGGGHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred CCCHHHHHHHHHHHcCcccCCccCCEEEECC
Confidence 899999999999998764 2356 556664
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=205.61 Aligned_cols=221 Identities=16% Similarity=0.055 Sum_probs=161.1
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+.+.++......+.++.+|++|+++++++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK--LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN 96 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG--GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999763 112222222111236789999999998887775
Q ss_pred --CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 --GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 --~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||... ....+.+...+++|+.|+.++++++.+.+ ..++||++||..+..+.+.
T Consensus 97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 170 (285)
T 2p91_A 97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPH------ 170 (285)
T ss_dssp TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTT------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCC------
Confidence 6899999999653 12334567899999999999999998763 2369999999855543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||.+.+.+++.++.++ |+++++++||.|+++..... .........+....
T Consensus 171 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~---- 229 (285)
T 2p91_A 171 ----------------YNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI-TGFHLLMEHTTKVN---- 229 (285)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C-TTHHHHHHHHHHHS----
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc-cchHHHHHHHHhcC----
Confidence 1459999999999999998875 89999999999999865431 11122222222222
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+.+++|+|+++++++... ...| .+++.++
T Consensus 230 p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg 265 (285)
T 2p91_A 230 PFGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNG 265 (285)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCC
Confidence 3445788999999999998643 3356 4555543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=200.12 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=148.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... . ..+..+.+|++|+++++++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~------~-----~~~~~~~~D~~d~~~~~~~~~~~~~~~g 73 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE------Q-----YPFATEVMDVADAAQVAQVCQRLLAETE 73 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS------C-----CSSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh------c-----CCceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999999999999976421 0 126788999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 142 (250)
T 2fwm_X 74 RLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIG----------- 142 (250)
T ss_dssp CCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT-----------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCC-----------
Confidence 68999999996432 123456789999999999999998432 15689999999865543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHH-HHHc-CCCCC-C-C
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVIL-NLIN-GDQSF-A-F 223 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~-~~~~-g~~~~-~-~ 223 (322)
...|+.||.+.+.+.+.++.+. |++++++|||.++++........ ..... .+.. ..... . +
T Consensus 143 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p 210 (250)
T 2fwm_X 143 -----------MSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVS-DDAEEQRIRGFGEQFKLGIP 210 (250)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------------------
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccC-hhHHHHHHhhhhhcccccCC
Confidence 1569999999999999998874 99999999999999864321100 00001 1110 00000 1 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...+.+++|+|+++++++..+ ...|.. .+.++
T Consensus 211 ~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (250)
T 2fwm_X 211 LGKIARPQEIANTILFLASDLASHITLQDIVVDGG 245 (250)
T ss_dssp -----CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 345789999999999999763 345644 45443
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=204.98 Aligned_cols=218 Identities=19% Similarity=0.146 Sum_probs=157.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe-CCCCcChhhhhhccCC-CCcEEEEEccCCCc----cchHHhhC-
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR-DPNSPKTEHLRELDGA-TERLHLFKANLLEE----GSFDSAVD- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~----~~~~~~~~- 78 (322)
|++|+++||||+|+||++++++|+++|++|++++| +.... .+...++... +.++.++.+|++|+ ++++++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 87 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAA-QRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC 87 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHH-HHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence 56789999999999999999999999999999998 53221 1112222111 34688999999999 88877765
Q ss_pred ------CCCEEEEcccCccc-----CCC-----------CCcchhhhHHHHHHHHHHHHHhhcC--Cc------cEEEEe
Q 020747 79 ------GCDGVFHTASPVIF-----LSD-----------NPQADIVDPAVMGTLNVLRSCAKVH--SI------KRVVLT 128 (322)
Q Consensus 79 ------~~d~vih~A~~~~~-----~~~-----------~~~~~~~~~N~~~~~~l~~~~~~~~--~~------~~~i~~ 128 (322)
++|+|||+||.... ... +.+...+++|+.++.++++++.+.+ +. ++||++
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i 167 (276)
T 1mxh_A 88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL 167 (276)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence 78999999996432 122 4456789999999999999998853 33 799999
Q ss_pred cchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC
Q 020747 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN 205 (322)
Q Consensus 129 SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~ 205 (322)
||..++.+.+. ...|+.||.+.+.+.+.++.++ |+++++++||.++++ . . ..
T Consensus 168 sS~~~~~~~~~----------------------~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~-~~ 222 (276)
T 1mxh_A 168 CDAMTDLPLPG----------------------FCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-A-MP 222 (276)
T ss_dssp CCGGGGSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-S-SC
T ss_pred CchhhcCCCCC----------------------CeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-c-CC
Confidence 99866543322 1569999999999999999875 899999999999998 2 1 11
Q ss_pred ccHHHHHHHHcCCCCCCCCCc-ceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 206 FGAEVILNLINGDQSFAFPYI-FVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~-~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
......+.... +... +.+++|+|+++++++... ...|. +++.++
T Consensus 223 --~~~~~~~~~~~----p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG 270 (276)
T 1mxh_A 223 --QETQEEYRRKV----PLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG 270 (276)
T ss_dssp --HHHHHHHHTTC----TTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --HHHHHHHHhcC----CCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence 22223333322 2223 889999999999999753 33564 455544
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=208.69 Aligned_cols=229 Identities=18% Similarity=0.146 Sum_probs=165.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-------hhhh----hhccCCCCcEEEEEccCCCccchH
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-------TEHL----RELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... .+.+ ..+.....++.++++|++|+++++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 90 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS 90 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 56799999999999999999999999999999998732110 1111 111222457899999999999998
Q ss_pred HhhC-------CCCEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCC
Q 020747 75 SAVD-------GCDGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
++++ ++|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+ ..++||++||..++.+....
T Consensus 91 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-- 168 (278)
T 3sx2_A 91 AALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSA-- 168 (278)
T ss_dssp HHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCCS--
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCccC--
Confidence 8776 78999999997543 2345677899999999999999986542 24689999998666543210
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHH-HcCC
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNL-INGD 218 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~-~~g~ 218 (322)
.+ ....|+.||++.+.+++.++.++ |+++++++||.|.++...... ....+... ....
T Consensus 169 -----------~~-----~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~ 230 (278)
T 3sx2_A 169 -----------DP-----GSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEF--TREWLAKMAAATD 230 (278)
T ss_dssp -----------SH-----HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHH--HHHHHHHHHHHCC
T ss_pred -----------CC-----CchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhh--HHHHHhhccchhh
Confidence 01 11569999999999999999875 799999999999998754311 11111111 1111
Q ss_pred --CCCC---CCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 219 --QSFA---FPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 219 --~~~~---~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
..+. + ..+++++|+|+++++++... ..+|.. ++.|+
T Consensus 231 ~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 274 (278)
T 3sx2_A 231 TPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAG 274 (278)
T ss_dssp --CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCC
Confidence 1121 4 78899999999999999653 356744 55543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=204.83 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=159.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
+|+|+||||+|+||++++++|+++|++|+++ +|+..... ....++.....++..+++|++|+++++++++ +
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAE-EVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999999999985 56532211 1111221113568899999999999888776 6
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..++++.+.
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 147 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIG------------ 147 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTT------------
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCC------------
Confidence 8999999996532 223456678999999999999998764 15679999999867665432
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+++.++.+. |++++++|||.++++..... ............ +...++
T Consensus 148 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~----~~~~~~ 210 (244)
T 1edo_A 148 ----------QANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL---GEDMEKKILGTI----PLGRTG 210 (244)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CHHHHHHHHTSC----TTCSCB
T ss_pred ----------CccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc---ChHHHHHHhhcC----CCCCCC
Confidence 1569999999999999998874 89999999999999854321 112222233322 445688
Q ss_pred eHHHHHHHHHHhhcCC---CCCc-cEEEecC
Q 020747 229 EIRDVVYAHIRALEVP---KASG-RYLLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~---~~~g-~~~~~~~ 255 (322)
+++|+|+++++++..+ ...| .+++.++
T Consensus 211 ~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 211 QPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp CHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 9999999999998443 2346 4555543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=205.43 Aligned_cols=226 Identities=18% Similarity=0.146 Sum_probs=164.6
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
...+++|+++||||+|+||++++++|+++|++|++++++..+.......++...+.++.++++|++|+++++++++
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3346789999999999999999999999999999988765332222223333335678999999999999887776
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhh-ccCCCCCCCCcccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAM-LLNETPMTPDVVID 148 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~-~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.+++.+++|+.|+.++++++.+.+. .++||++||..+. .+.+.
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--------- 163 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPK--------- 163 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTT---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCC---------
Confidence 68999999997532 23455778999999999999999988632 3599999997422 22111
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC-------C-Ccc-HHHHHHHHc
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI-------L-NFG-AEVILNLIN 216 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~-------~-~~~-~~~~~~~~~ 216 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++..... . ... .........
T Consensus 164 -------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (270)
T 3is3_A 164 -------------HSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH 230 (270)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh
Confidence 1569999999999999999884 89999999999999853210 0 001 111111222
Q ss_pred CCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 217 GDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 217 g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
.. +...+.+++|+|+++++++... ..+|.. ++.|
T Consensus 231 ~~----p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 267 (270)
T 3is3_A 231 AS----PLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDG 267 (270)
T ss_dssp HS----TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred cC----CCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCC
Confidence 22 5567889999999999999653 356754 5544
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=206.49 Aligned_cols=234 Identities=18% Similarity=0.140 Sum_probs=165.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-------hhhh----hhccCCCCcEEEEEccCCCccchH
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-------TEHL----RELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ...+ .++...+.++.++++|++|+++++
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 87 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS 87 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 56799999999999999999999999999999998743211 1111 112222467899999999999988
Q ss_pred HhhC-------CCCEEEEcccCccc---CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCC
Q 020747 75 SAVD-------GCDGVFHTASPVIF---LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~~~---~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
++++ ++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..++.+...
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 163 (287)
T 3pxx_A 88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQ---- 163 (287)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccc----
Confidence 7776 78999999997543 2345577899999999999999998864 3458999999866654421
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC-----------CccHH
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL-----------NFGAE 209 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~-----------~~~~~ 209 (322)
.+..|..+..+ ...|+.||.+.+.+.+.++.++ |+++++++||.|.++...... .....
T Consensus 164 -~~~~~~~~~~~------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
T 3pxx_A 164 -PPGAGGPQGPG------GAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRAD 236 (287)
T ss_dssp -CC-----CHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHH
T ss_pred -cccccccCCCc------cchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHH
Confidence 12222221111 2569999999999999999886 999999999999998654210 00000
Q ss_pred HHHHH-HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 210 VILNL-INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 210 ~~~~~-~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
..... ..+. ....+.+++|+|+++++++... ..+|.. ++.|
T Consensus 237 ~~~~~~~~~~----~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdG 281 (287)
T 3pxx_A 237 ALLAFPAMQA----MPTPYVEASDISNAVCFLASDESRYVTGLQFKVDA 281 (287)
T ss_dssp HHHHGGGGCS----SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHhhhhhhcc----cCCCCCCHHHHHhhHheecchhhcCCCCceEeECc
Confidence 00000 0000 2277899999999999999653 456744 5554
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=204.23 Aligned_cols=218 Identities=20% Similarity=0.198 Sum_probs=157.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEE-EEccCCCccchHHhhC-------C
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHL-FKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~-------~ 79 (322)
|+|+||||+|+||++++++|+++|++|+++ +|+.+... ....++...+.++.. +.+|++|+++++++++ +
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAE-EVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHH-HHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999999988 66543221 111222112334566 8999999998887754 7
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..++++.+.
T Consensus 81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------ 148 (245)
T 2ph3_A 81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPG------------ 148 (245)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSS------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCC------------
Confidence 8999999996532 233456788999999977777665432 15689999999866665332
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.||.+.+.+.+.++.++ |++++++|||.++++..... ..........+. +...++
T Consensus 149 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~----~~~~~~ 211 (245)
T 2ph3_A 149 ----------QANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL---PQEVKEAYLKQI----PAGRFG 211 (245)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHHTC----TTCSCB
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc---CHHHHHHHHhcC----CCCCCc
Confidence 1569999999999999998875 89999999999999864321 112222233332 446688
Q ss_pred eHHHHHHHHHHhhcCC--CCCc-cEEEecCC
Q 020747 229 EIRDVVYAHIRALEVP--KASG-RYLLAGSV 256 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g-~~~~~~~~ 256 (322)
+++|+|++++.++..+ ...| .++++++.
T Consensus 212 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 212 RPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 9999999999998753 2345 55666553
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=204.60 Aligned_cols=213 Identities=15% Similarity=0.122 Sum_probs=148.4
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|+..+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++++|++|+++++++++
T Consensus 1 M~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (252)
T 3h7a_A 1 MSLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLA-PLVAEIEAAGGRIVARSLDARNEDEVTAFLNAAD 79 (252)
T ss_dssp ----CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHH
Confidence 333467899999999999999999999999999999999765432 2223333235678999999999999988876
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+ +.++||++||..+..+.+.
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 151 (252)
T 3h7a_A 80 AHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSG-------- 151 (252)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTT--------
T ss_pred hhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCC--------
Confidence 67999999996432 3344567899999999999999885431 4579999999866654432
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccE-EEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDL-VAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~-~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||++.+.+.+.++.++ |+++ ++++||.|.++....... .......... +
T Consensus 152 --------------~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~---~~~~~~~~~~----~ 210 (252)
T 3h7a_A 152 --------------FAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERRE---QMFGKDALAN----P 210 (252)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccch---hhhhhhhhcC----C
Confidence 1569999999999999999874 8999 899999998876433211 1111111111 3
Q ss_pred CCcceeHHHHHHHHHHhhcCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
.. +++++|+|+++++++..+.
T Consensus 211 ~~-~~~pedvA~~~~~l~s~~~ 231 (252)
T 3h7a_A 211 DL-LMPPAAVAGAYWQLYQQPK 231 (252)
T ss_dssp ----CCHHHHHHHHHHHHHCCG
T ss_pred cc-CCCHHHHHHHHHHHHhCch
Confidence 33 8899999999999998754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=200.02 Aligned_cols=220 Identities=17% Similarity=0.122 Sum_probs=166.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++++|++|+++++++++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAE-KFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56799999999999999999999999999999999764322 2222222234578999999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+..
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 151 (247)
T 3lyl_A 82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQ---------- 151 (247)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC----------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCc----------
Confidence 47999999997532 234456789999999999999987653 144699999998676544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+++.++.++ |+++++++||.+.++...... .........+. +...+
T Consensus 152 ------------~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~----~~~~~ 212 (247)
T 3lyl_A 152 ------------TNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLT---DEQKSFIATKI----PSGQI 212 (247)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSC---HHHHHHHHTTS----TTCCC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhcc---HHHHHHHhhcC----CCCCC
Confidence 569999999999999999874 899999999999998754321 22222223333 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+++|+|+++++++... ...| .+++.++
T Consensus 213 ~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 243 (247)
T 3lyl_A 213 GEPKDIAAAVAFLASEEAKYITGQTLHVNGG 243 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCCCcCCccCCEEEECCC
Confidence 89999999999998653 3456 4555543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=203.98 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=160.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcE-EEEEccCCCccchHHhh------C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL-HLFKANLLEEGSFDSAV------D 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~~~~~~~~~~------~ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.+... ....++ ..++ ..+.+|++|++++++++ .
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALD-RAAQEL---GAAVAARIVADVTDAEAMTAAAAEAEAVA 84 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---GGGEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---cccceeEEEEecCCHHHHHHHHHHHHhhC
Confidence 45689999999999999999999999999999999753321 111222 2356 88999999999888776 4
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------- 153 (254)
T 2wsb_A 85 PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRP----------- 153 (254)
T ss_dssp CCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSS-----------
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCC-----------
Confidence 78999999996432 122235678899999988888876542 15689999999855543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
.+ .+.|+.||++.+.+++.++.++ |++++++|||.++++..... .........+.... +...+
T Consensus 154 ---~~------~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~----~~~~~ 219 (254)
T 2wsb_A 154 ---QF------ASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKM-RERPELFETWLDMT----PMGRC 219 (254)
T ss_dssp ---SC------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHH-HTCHHHHHHHHHTS----TTSSC
T ss_pred ---Cc------chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcc-ccChHHHHHHHhcC----CCCCC
Confidence 11 1569999999999999998875 99999999999999853211 00112233333333 44678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
++++|+|+++++++... ...| .+++.++
T Consensus 220 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 220 GEPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 99999999999998653 3456 4455554
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=204.62 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=159.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... ..++.++.+|++|+++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLE-AAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999753321 111222110 2268899999999999988876
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 83 ~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 153 (260)
T 2z1n_A 83 LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQD--------- 153 (260)
T ss_dssp TTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT---------
T ss_pred hcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC---------
Confidence 59999999996422 233456789999999998888877543 15689999999855543221
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC------ccH-HH-HHHHHcC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN------FGA-EV-ILNLING 217 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~------~~~-~~-~~~~~~g 217 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.++++....... ... .. ...+...
T Consensus 154 -------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T 2z1n_A 154 -------------LALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASR 220 (260)
T ss_dssp -------------BHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------C
T ss_pred -------------CchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhc
Confidence 1569999999999999998875 8999999999999986441100 000 00 1111111
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
. +...+.+++|+|+++++++... ..+|.. .+.++
T Consensus 221 ~----p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG 257 (260)
T 2z1n_A 221 I----PMGRVGKPEELASVVAFLASEKASFITGAVIPVDGG 257 (260)
T ss_dssp C----TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred C----CCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 1 3456789999999999999753 346644 55443
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=201.35 Aligned_cols=224 Identities=17% Similarity=0.073 Sum_probs=164.6
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ +.++..+++|++|+++++++++
T Consensus 1 M~m~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 1 MVMGNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIA-RIREEF---GPRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp ---CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCcceEEEccCCCHHHHHHHHHHH
Confidence 4333467899999999999999999999999999999999753321 111222 3578999999999998887665
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... ...+.+++.+++|+.++.++++++.+.+ ..++||++||..++.+.+.
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 148 (255)
T 4eso_A 77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPG-------- 148 (255)
T ss_dssp HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTT--------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCC--------
Confidence 67999999996432 2445567899999999999999998752 2358999999866554332
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCcc--H-HHHHHHHcCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFG--A-EVILNLINGDQSF 221 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~--~-~~~~~~~~g~~~~ 221 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++......... . .+........
T Consensus 149 --------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~--- 211 (255)
T 4eso_A 149 --------------MSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNIT--- 211 (255)
T ss_dssp --------------BHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHS---
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccC---
Confidence 1569999999999999999885 899999999999998654321111 1 1111111112
Q ss_pred CCCCcceeHHHHHHHHHHhhcC-CCCCcc-EEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEV-PKASGR-YLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~-~~~~g~-~~~~~ 254 (322)
+...+.+++|+|+++++++.. ...+|. +++.|
T Consensus 212 -p~~r~~~pedvA~~v~~L~s~~~~itG~~i~vdG 245 (255)
T 4eso_A 212 -PMKRNGTADEVARAVLFLAFEATFTTGAKLAVDG 245 (255)
T ss_dssp -TTSSCBCHHHHHHHHHHHHHTCTTCCSCEEEEST
T ss_pred -CCCCCcCHHHHHHHHHHHcCcCcCccCCEEEECC
Confidence 556678999999999998874 345674 45554
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=202.01 Aligned_cols=192 Identities=17% Similarity=0.140 Sum_probs=149.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~vih 85 (322)
|+|+||||+|+||++++++|+++ +|++++|+..+.. ....++. . .++.+|++|+++++++++ ++|+|||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~-~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~id~vi~ 72 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALA-ELAREVG----A-RALPADLADELEAKALLEEAGPLDLLVH 72 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHH-HHHHHHT----C-EECCCCTTSHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHH-HHHHhcc----C-cEEEeeCCCHHHHHHHHHhcCCCCEEEE
Confidence 57999999999999999999999 9999998653221 1111111 1 788999999999999988 8999999
Q ss_pred cccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccc
Q 020747 86 TASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKE 160 (322)
Q Consensus 86 ~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 160 (322)
+||.... ...+.+...+++|+.++.++++++++. +.++||++||..++.+.+.
T Consensus 73 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~~~~--------------------- 130 (207)
T 2yut_A 73 AVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRYVQVPG--------------------- 130 (207)
T ss_dssp CCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHHHSSTT---------------------
T ss_pred CCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhccCCCC---------------------
Confidence 9996432 234556789999999999999999665 6789999999865543221
Q ss_pred cchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHH
Q 020747 161 NKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAH 237 (322)
Q Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~ 237 (322)
.+.|+.+|.+.|.+++.++.+ +|++++++|||.++++.... .+. +.+++++++|+|+++
T Consensus 131 -~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~-------------~~~----~~~~~~~~~dva~~~ 192 (207)
T 2yut_A 131 -FAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAP-------------LGG----PPKGALSPEEAARKV 192 (207)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGGG-------------GTS----CCTTCBCHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCccc-------------cCC----CCCCCCCHHHHHHHH
Confidence 156999999999999999887 59999999999999975211 112 557899999999999
Q ss_pred HHhhcCCCCCc
Q 020747 238 IRALEVPKASG 248 (322)
Q Consensus 238 ~~~~~~~~~~g 248 (322)
+.+++++..+.
T Consensus 193 ~~~~~~~~~~~ 203 (207)
T 2yut_A 193 LEGLFREPVPA 203 (207)
T ss_dssp HHHHC--CCCS
T ss_pred HHHHhCCCCcc
Confidence 99998865443
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=203.30 Aligned_cols=207 Identities=17% Similarity=0.182 Sum_probs=156.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+.. .+++.. ..++..+++|++|+++++++++
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE-----RLKALN--LPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH-----HHHTTC--CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHhh--cCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 356789999999999999999999999999999998753 222222 2368899999999998887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 86 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~---------- 155 (266)
T 3p19_A 86 GPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPD---------- 155 (266)
T ss_dssp CSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCC----------
Confidence 68999999997532 223346678999999999988887532 15679999999866654332
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQSFAFPY 225 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|.++......... ......... +..
T Consensus 156 ------------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------~~~ 217 (266)
T 3p19_A 156 ------------HAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRV------DMG 217 (266)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHH------HTT
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhcc------ccc
Confidence 156999999999999999988 4899999999999998654322211 111111110 335
Q ss_pred cceeHHHHHHHHHHhhcCCCC
Q 020747 226 IFVEIRDVVYAHIRALEVPKA 246 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~ 246 (322)
.+++++|+|++++++++++..
T Consensus 218 r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 218 GVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp CCBCHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHcCCCC
Confidence 578999999999999998653
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=201.02 Aligned_cols=216 Identities=14% Similarity=0.116 Sum_probs=157.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~----- 78 (322)
+++|+++||||+|+||++++++|+++|++ |++++|+......+.+.+... ..++.++.+|++|+ ++++++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHHHHh
Confidence 56799999999999999999999999997 899998764211122222211 34688999999998 77776665
Q ss_pred --CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC------ccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 --GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS------IKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 --~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||... .+.++..+++|+.++.++++++.+.+. .++||++||..++.+.+.
T Consensus 82 ~g~id~lv~~Ag~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 147 (254)
T 1sby_A 82 LKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQ----------- 147 (254)
T ss_dssp HSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT-----------
T ss_pred cCCCCEEEECCccCC---HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCC-----------
Confidence 7899999999742 456788999999999999999876421 357999999865543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCcc--HHHHHHHHcCCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFG--AEVILNLINGDQSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~--~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||.+.+.+++.++.+ +|+++++++||.|.++......... ........ ...
T Consensus 148 -----------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------~~~ 209 (254)
T 1sby_A 148 -----------VPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL-------LSH 209 (254)
T ss_dssp -----------SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHH-------TTS
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHH-------hcC
Confidence 156999999999999999876 5999999999999998532211000 00111222 123
Q ss_pred cceeHHHHHHHHHHhhcCCCCCc-cEEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVPKASG-RYLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~~ 255 (322)
.+.+++|+|++++.+++.. ..| .|++.++
T Consensus 210 ~~~~~~dvA~~i~~~~~~~-~~G~~~~v~gG 239 (254)
T 1sby_A 210 PTQTSEQCGQNFVKAIEAN-KNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHC-CTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHcC-CCCCEEEEeCC
Confidence 4558999999999998754 345 6666653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-28 Score=207.05 Aligned_cols=221 Identities=15% Similarity=0.069 Sum_probs=164.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.. ...++.++++|++|+++++++++
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELD-AARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999754322 11122211 14578999999999999887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++.+.+.
T Consensus 97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 167 (266)
T 4egf_A 97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPD--------- 167 (266)
T ss_dssp TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCC---------
Confidence 78999999997532 2334567889999999999999986642 2 359999999866554332
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++....... .......+.... +..
T Consensus 168 -------------~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~----p~~ 229 (266)
T 4egf_A 168 -------------HYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG-DEAKSAPMIARI----PLG 229 (266)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC-SHHHHHHHHTTC----TTS
T ss_pred -------------ChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc-ChHHHHHHHhcC----CCC
Confidence 1569999999999999999874 8999999999999875322111 122233333333 556
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
.+.+++|+|+++++++... ..+|.. ++.+
T Consensus 230 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASDAASMINGVDIPVDG 261 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCcCHHHHHHHHHHHhCchhcCccCcEEEECC
Confidence 7789999999999999753 456744 5554
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=204.91 Aligned_cols=227 Identities=18% Similarity=0.210 Sum_probs=163.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +...++.. ...++.++++|++|+++++++++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV-EVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH-HHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhH-HHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999765432 11222211 13468899999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..++.+... .
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-----~--- 162 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS-----S--- 162 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE-----E---
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc-----c---
Confidence 37999999996432 2233456789999999999999986541 2478999999855543221 0
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
..+. .+...|+.||.+.+.+++.++.+. |++++++|||.++++..... ............ +..
T Consensus 163 -~~~~------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~----~~~ 228 (265)
T 1h5q_A 163 -LNGS------LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---DKKIRDHQASNI----PLN 228 (265)
T ss_dssp -TTEE------CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTC----TTS
T ss_pred -cccc------ccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc---chhHHHHHHhcC----ccc
Confidence 0001 112569999999999999998874 89999999999999865432 112222222222 445
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.+++++|+|+++++++..+ ...| .+++.++
T Consensus 229 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 229 RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred CCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 6889999999999998753 2455 5666654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=209.21 Aligned_cols=222 Identities=17% Similarity=0.149 Sum_probs=165.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++++|++|+++++++++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVA-QTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI 102 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHH-HHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence 56799999999999999999999999999999988754322 2223333334678999999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+++.+++|+.|+.++++++.+.+ +.++||++||..+..+.+..
T Consensus 103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~---------- 172 (271)
T 4ibo_A 103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATV---------- 172 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTC----------
T ss_pred CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCc----------
Confidence 68999999996432 2345567899999999999988876542 45699999998666544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+.+.++.+ +|+++++++||.|.++...... ........+.... +...+
T Consensus 173 ------------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~----p~~r~ 235 (271)
T 4ibo_A 173 ------------APYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALI-DNPEFDAWVKART----PAKRW 235 (271)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-HCHHHHHHHHHHS----TTCSC
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcc-cCHHHHHHHHhcC----CCCCC
Confidence 56999999999999999987 4899999999999998633210 0112222222222 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
.+++|+|+++++++... ..+|. +++.|+
T Consensus 236 ~~pedva~~v~~L~s~~~~~itG~~i~vdGG 266 (271)
T 4ibo_A 236 GKPQELVGTAVFLSASASDYVNGQIIYVDGG 266 (271)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCccccCCCCcEEEECCC
Confidence 89999999999998753 35674 455543
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=202.10 Aligned_cols=214 Identities=19% Similarity=0.123 Sum_probs=160.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
..++|+||||||+|+||++++++|+++|++|++++|+..... .....+++|++|+++++++++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV-----------NVSDHFKIDVTNEEEVKEAVEKTTKKY 79 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT-----------TSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc-----------CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999764431 245788999999999887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 149 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKN---------- 149 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTT----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCC----------
Confidence 78999999996432 233446678899999999999987653 14579999999966654332
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCC--------CCccHHHHHHHHcCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPI--------LNFGAEVILNLINGDQ 219 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~~ 219 (322)
...|+.||++.+.+.+.++.++ ++++++++||.|.++..... ..........+....
T Consensus 150 ------------~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (269)
T 3vtz_A 150 ------------AAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH- 216 (269)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS-
T ss_pred ------------ChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC-
Confidence 1569999999999999999887 89999999999998752110 000011222222222
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
+...+.+++|+|+++++++... ..+| .+++.|+
T Consensus 217 ---p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 252 (269)
T 3vtz_A 217 ---PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG 252 (269)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence 5667889999999999999753 3456 4456544
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=204.68 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=159.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+++|++|+++++++++
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLK-EIAADL---GKDVFVFSANLSDRKSIKQLAEVAEREME 100 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CSSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 56799999999999999999999999999999998753321 111222 3578999999999999887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~----------- 169 (266)
T 3grp_A 101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPG----------- 169 (266)
T ss_dssp SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------C-----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCC-----------
Confidence 78999999997532 223456788999999988888877543 15579999999866654332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++..... .......+.... +...+
T Consensus 170 -----------~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~~r~ 231 (266)
T 3grp_A 170 -----------QTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL---NEKQKEAIMAMI----PMKRM 231 (266)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC---CHHHHHHHHTTC----TTCSC
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc---CHHHHHHHHhcC----CCCCC
Confidence 1569999999999999999874 89999999999998754321 122233334443 56678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
.+++|+|+++++++... ..+|.. ++.|+
T Consensus 232 ~~~edvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3grp_A 232 GIGEEIAFATVYLASDEAAYLTGQTLHINGG 262 (266)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 89999999999998753 346744 55543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-28 Score=210.30 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=165.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCC---cEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE---RLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++..... ++.++.+|++|+++++++++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE-ETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999753321 11122211122 68999999999998887776
Q ss_pred ---CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccC-CCCCCCC
Q 020747 79 ---GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLN-ETPMTPD 144 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~-~~~~~~~ 144 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ + ++||++||..+..+. +.
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~~~----- 176 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSG----- 176 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCCTT-----
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCCCC-----
Confidence 68999999996432 2234567899999999999999987642 3 799999998554332 11
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCC-Ccc-----HHHHHHHH
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPIL-NFG-----AEVILNLI 215 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~-~~~-----~~~~~~~~ 215 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|.++...... ... ......+.
T Consensus 177 -----------------~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 239 (297)
T 1xhl_A 177 -----------------YPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRK 239 (297)
T ss_dssp -----------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred -----------------cchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHH
Confidence 156999999999999999876 4999999999999998532211 000 01111111
Q ss_pred cCCCCCCCCCcceeHHHHHHHHHHhhcCC---CCCcc-EEEecC-CCCHHHHHHHHHH
Q 020747 216 NGDQSFAFPYIFVEIRDVVYAHIRALEVP---KASGR-YLLAGS-VAQHSDILKFLRE 268 (322)
Q Consensus 216 ~g~~~~~~~~~~i~~~D~a~~~~~~~~~~---~~~g~-~~~~~~-~~~~~e~~~~i~~ 268 (322)
... +...+.+++|+|+++++++... ...|. +.+.++ .....+.+..+.+
T Consensus 240 ~~~----p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 240 ECI----PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp TTC----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred hcC----CCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhh
Confidence 111 3456889999999999999754 45674 455543 3444444443333
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=202.95 Aligned_cols=212 Identities=15% Similarity=0.125 Sum_probs=158.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+... ..++..+++|++|+++++++++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 73 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------------EAKYDHIECDVTNPDQVKASIDHIFKEYG 73 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------------SCSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------------CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999999997643 1357889999999998887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+ +.++||++||..++.+.+.
T Consensus 74 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 142 (264)
T 2dtx_A 74 SISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKN----------- 142 (264)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTT-----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCC-----------
Confidence 68999999996432 1334567899999999999999987642 4579999999855543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCCccCCCCCCCCC----ccH----HHHHHHHcCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILN----FGA----EVILNLINGDQS 220 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~rp~~v~G~~~~~~~~----~~~----~~~~~~~~g~~~ 220 (322)
...|+.||.+.+.+.+.++.+++ +++++++||.+.++....... ... .....+....
T Consensus 143 -----------~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 209 (264)
T 2dtx_A 143 -----------ASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEH-- 209 (264)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHS--
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcC--
Confidence 15699999999999999998865 999999999998874221000 000 1111111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
+...+++++|+|+++++++... ...|. +.+.++
T Consensus 210 --p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (264)
T 2dtx_A 210 --PMQRIGKPQEVASAVAFLASREASFITGTCLYVDGG 245 (264)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 4456899999999999998753 34564 455543
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=200.88 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=159.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh---CCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV---DGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~~~d~ 82 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... .++. ...++..+.+|++|++++++++ .++|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-----~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 77 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL-----QELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDV 77 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-----GGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-----HHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCE
Confidence 5679999999999999999999999999999999875322 2221 1136889999999999888664 47899
Q ss_pred EEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 83 VFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 83 vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
|||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------------- 142 (246)
T 2ag5_A 78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVV--------------- 142 (246)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCT---------------
T ss_pred EEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCC---------------
Confidence 9999996432 233456778999999999999998653 15679999999855443220
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC---CccHHHHHHHHcCCCCCCCCCcce
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL---NFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
....|+.||.+.+.+++.++.+. |++++++|||.++++...... .........+.... +...+.
T Consensus 143 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 212 (246)
T 2ag5_A 143 ------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ----KTGRFA 212 (246)
T ss_dssp ------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC----TTSSCE
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcC----CCCCCC
Confidence 01569999999999999999875 999999999999998532100 00111122222222 345688
Q ss_pred eHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 229 EIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+++|+|+++++++... ..+|.. .+.++
T Consensus 213 ~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG 242 (246)
T 2ag5_A 213 TAEEIAMLCVYLASDESAYVTGNPVIIDGG 242 (246)
T ss_dssp EHHHHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 9999999999999653 345644 45443
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=197.82 Aligned_cols=223 Identities=17% Similarity=0.073 Sum_probs=169.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 82 (322)
++++|+++||||++.||+++++.|+++|.+|++.+|+..+ +..+.+...+.+...+++|++|+++++++++ ++|+
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~---~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD---ETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH---HHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH---HHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 3678999999999999999999999999999999987542 3333344445678999999999999988876 5899
Q ss_pred EEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 83 VFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 83 vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+||+||... +.+.+.|++.+++|+.|+..+.+++.+.+ +..+||++||..+..+.+..
T Consensus 83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~------------- 149 (247)
T 4hp8_A 83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRV------------- 149 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSC-------------
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCC-------------
Confidence 999999643 24556788999999999999999866532 24699999998776554321
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
..|+.||.+...+.+.++.++ |++++.|.||.|..|...... ........+.... +...+..+
T Consensus 150 ---------~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~-~~~~~~~~~~~~~----PlgR~g~p 215 (247)
T 4hp8_A 150 ---------PSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALR-ADAARNKAILERI----PAGRWGHS 215 (247)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH-TSHHHHHHHHTTC----TTSSCBCT
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcc-cCHHHHHHHHhCC----CCCCCcCH
Confidence 569999999999999999885 899999999999887532211 1122223333333 45667789
Q ss_pred HHHHHHHHHhhcCC--CCCccEEEecCCC
Q 020747 231 RDVVYAHIRALEVP--KASGRYLLAGSVA 257 (322)
Q Consensus 231 ~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 257 (322)
+|+|.++++++... ..+|..+..++.+
T Consensus 216 eeiA~~v~fLaSd~a~~iTG~~i~VDGG~ 244 (247)
T 4hp8_A 216 EDIAGAAVFLSSAAADYVHGAILNVDGGW 244 (247)
T ss_dssp HHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHHHhCchhcCCcCCeEEECccc
Confidence 99999999998653 4577665544433
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=203.49 Aligned_cols=228 Identities=20% Similarity=0.165 Sum_probs=164.8
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-----------hhhh----hhccCCCCcEEEEEccC
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-----------TEHL----RELDGATERLHLFKANL 67 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~----~~~~~~~~~~~~~~~Dl 67 (322)
...+++|+++||||+|+||++++++|+++|++|++++|+..... .+.+ ..+.....++..+++|+
T Consensus 6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 85 (286)
T 3uve_A 6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDV 85 (286)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCC
Confidence 33467899999999999999999999999999999998742110 1111 22223356799999999
Q ss_pred CCccchHHhhC-------CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecc
Q 020747 68 LEEGSFDSAVD-------GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSS 130 (322)
Q Consensus 68 ~~~~~~~~~~~-------~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS 130 (322)
+|+++++++++ ++|++||+||.... ...+.+...+++|+.++.++++++.+.+ + .++||++||
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS 165 (286)
T 3uve_A 86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS 165 (286)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 99999887776 68999999996432 2344567899999999999999987642 2 468999999
Q ss_pred hhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCC---
Q 020747 131 IGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPIL--- 204 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~--- 204 (322)
..++.+.+.. ..|+.||.+.+.+.+.++.+ +|+++++++||.|.++......
T Consensus 166 ~~~~~~~~~~----------------------~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~ 223 (286)
T 3uve_A 166 VGGLKAYPHT----------------------GHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFK 223 (286)
T ss_dssp GGGTSCCTTC----------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHH
T ss_pred hhhccCCCCc----------------------cHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhh
Confidence 8666543321 56999999999999999988 4899999999999998653210
Q ss_pred -------CccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 205 -------NFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 205 -------~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
................. + ..+.+++|+|+++++++... ..+|.. ++.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~-p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG 281 (286)
T 3uve_A 224 MFRPDLENPGPDDMAPICQMFHTL-P-IPWVEPIDISNAVLFFASDEARYITGVTLPIDA 281 (286)
T ss_dssp HHCTTSSSCCHHHHHHHHHTTCSS-S-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred hccccccccchhhHHHHHHhhhcc-C-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECC
Confidence 00011111111000000 3 67889999999999999653 456754 5544
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=203.95 Aligned_cols=234 Identities=19% Similarity=0.174 Sum_probs=159.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc----cCCCCcEEEEEccCCCccchHHhhC---
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL----DGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|++|+++||||+|+||++++++|+++|++|++.+|+......+.++.+ ...+.++..+.+|++|+++++++++
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999997543332222221 1124578999999999999988877
Q ss_pred ----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHh----hcCCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCA----KVHSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~----~~~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++. +. +.++||++||..+..+....
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS~~~~~~~~~~----- 156 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSSAGGTPPY----- 156 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCCSS-----
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEecchhccCCCCc-----
Confidence 79999999996432 2344567889999999999999984 33 56899999998655332210
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCC---CCccHHHHHHHHcCC-
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPI---LNFGAEVILNLINGD- 218 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~~~~g~- 218 (322)
.+.|+.||.+.+.+++.++.+ +|+++++|+||.+.++..... ...............
T Consensus 157 ----------------~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (324)
T 3u9l_A 157 ----------------LAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPN 220 (324)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTT
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccc
Confidence 156999999999999999988 499999999999987643211 111111111111111
Q ss_pred CCCC---------CCCcceeHHHHHHHHHHhhcCCCCC-c-cEEEecCCCCHHH
Q 020747 219 QSFA---------FPYIFVEIRDVVYAHIRALEVPKAS-G-RYLLAGSVAQHSD 261 (322)
Q Consensus 219 ~~~~---------~~~~~i~~~D~a~~~~~~~~~~~~~-g-~~~~~~~~~~~~e 261 (322)
...+ ...+..+++|+|++++.+++.+... . .+.+.+....+..
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~~~~ 274 (324)
T 3u9l_A 221 AGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGADV 274 (324)
T ss_dssp TTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCSHHH
T ss_pred cCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchHHHH
Confidence 0000 1223468999999999999887422 2 4455544455333
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=205.67 Aligned_cols=218 Identities=15% Similarity=0.114 Sum_probs=158.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... .++.++.+|++|+++++++++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACA-DTATRLSAY-GDCQAIPADLSSEAGARRLAQALGELSA 104 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHHHTTS-SCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhc-CceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999998753321 222223222 268889999999998887775
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---Cc----cEEEEecchhhhccCCCCCCCCcc
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SI----KRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~----~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +. ++||++||..++.+.+..
T Consensus 105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~~------ 178 (276)
T 2b4q_A 105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQ------ 178 (276)
T ss_dssp CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCCS------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCCC------
Confidence 68999999996432 2334567899999999999988876431 33 799999998655433210
Q ss_pred ccCCCCCCcccccccch-hHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHc--CCCC
Q 020747 147 IDETWFSNPVLCKENKE-WYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN--GDQS 220 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~--g~~~ 220 (322)
. .|+.||.+.+.+.+.++.+. |+++++++||.+.++...... ......+.. ..
T Consensus 179 ----------------~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---~~~~~~~~~~~~~-- 237 (276)
T 2b4q_A 179 ----------------AYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIA---NDPQALEADSASI-- 237 (276)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHH---HCHHHHHHHHHTS--
T ss_pred ----------------ccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcc---hhHHHHHHhhcCC--
Confidence 2 59999999999999999874 899999999999987532110 001111111 22
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
+...+.+++|+|+++++++..+ ...|.+ .+.+
T Consensus 238 --p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 272 (276)
T 2b4q_A 238 --PMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDG 272 (276)
T ss_dssp --TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --CCCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 3456789999999999999754 345644 4444
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=199.02 Aligned_cols=222 Identities=11% Similarity=0.057 Sum_probs=165.2
Q ss_pred CCCCcEEEEECCcch--hHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CC-CCcEEEEEccCCCccchHHhhC--
Q 020747 5 EGEEKVVCVTGASGF--VASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GA-TERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
.+++|+++||||+|+ ||++++++|+++|++|++++|+.... +...++. .. ..++.++++|++|+++++++++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLE--KSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHH--HHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 467899999999988 99999999999999999999874322 2222221 11 2368999999999999887776
Q ss_pred -----CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCC
Q 020747 79 -----GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 -----~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
.+|++||+||... ....+.+...+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 157 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPN---- 157 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTT----
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCC----
Confidence 6899999999653 123334567899999999999999988632 358999999866654332
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++..... .........+....
T Consensus 158 ------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~-- 216 (266)
T 3oig_A 158 ------------------YNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI-SDFNSILKDIEERA-- 216 (266)
T ss_dssp ------------------THHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-TTHHHHHHHHHHHS--
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc-cchHHHHHHHHhcC--
Confidence 1569999999999999999875 89999999999999765432 22222233333222
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
+...+.+++|+|+++++++... ..+|. +.+.|+
T Consensus 217 --~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG 252 (266)
T 3oig_A 217 --PLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSG 252 (266)
T ss_dssp --TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCC
Confidence 4456789999999999999753 35664 455543
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=198.93 Aligned_cols=205 Identities=18% Similarity=0.116 Sum_probs=156.1
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
||. +++|+++||||+|+||++++++|+++|++|++++|+.. +|++|+++++++++
T Consensus 1 M~~--~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------------------~D~~~~~~v~~~~~~~ 57 (223)
T 3uce_A 1 MMG--SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------------------LDISDEKSVYHYFETI 57 (223)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------------------CCTTCHHHHHHHHHHH
T ss_pred CCC--CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------------------cCCCCHHHHHHHHHHh
Confidence 554 56789999999999999999999999999999987642 79999999988876
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.+.+.+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 58 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~----------- 126 (223)
T 3uce_A 58 GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVAN----------- 126 (223)
T ss_dssp CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCTT-----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCCC-----------
Confidence 68999999996521 22344667899999999999999987532 348999999866543322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcC-ccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCCCCCCCcce
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG-IDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+.+.++.+++ +++++++||.+.++......... ........... +...+.
T Consensus 127 -----------~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 191 (223)
T 3uce_A 127 -----------TYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHL----PVGKVG 191 (223)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHS----TTCSCB
T ss_pred -----------chHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcC----CCCCcc
Confidence 15699999999999999999875 99999999999998654332211 11222222322 556788
Q ss_pred eHHHHHHHHHHhhcCCCCCccE-EEec
Q 020747 229 EIRDVVYAHIRALEVPKASGRY-LLAG 254 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g~~-~~~~ 254 (322)
+++|+|+++++++++...+|.. ++.+
T Consensus 192 ~~~dvA~~~~~l~~~~~~tG~~i~vdg 218 (223)
T 3uce_A 192 EASDIAMAYLFAIQNSYMTGTVIDVDG 218 (223)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred CHHHHHHHHHHHccCCCCCCcEEEecC
Confidence 9999999999999877777854 5554
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=202.70 Aligned_cols=220 Identities=18% Similarity=0.168 Sum_probs=160.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+.+... ....++...+.++.++.+|++|+++++++++
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD-SVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH-HHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999887643221 2222232224578899999999999888774
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..++++.+..
T Consensus 121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~---------- 190 (285)
T 2c07_A 121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQ---------- 190 (285)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC----------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCC----------
Confidence 68999999997532 223356678999999999998887642 156799999998666654321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+++.++.+. |++++++|||.+.++..... ............ +...+
T Consensus 191 ------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~----~~~~~ 251 (285)
T 2c07_A 191 ------------ANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI---SEQIKKNIISNI----PAGRM 251 (285)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C---CHHHHHHHHTTC----TTSSC
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc---CHHHHHHHHhhC----CCCCC
Confidence 569999999999999998774 89999999999999864321 122222233322 34568
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
++++|+|+++++++..+ ...| .++++++
T Consensus 252 ~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 252 GTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 99999999999998753 2356 4455543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=202.56 Aligned_cols=222 Identities=20% Similarity=0.172 Sum_probs=159.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++.+++...........+...+.++..+++|++|+++++++++
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3468999999999999999999999999999886654432222222222234678999999999999887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|++||+||.... ...+.+++.+++|+.|+.++++++.+.+ ..++||++||..+..+.+..
T Consensus 105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~------------ 172 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPSY------------ 172 (267)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTTC------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCCc------------
Confidence 68999999996532 2334467788999999999999987753 23589999998665543321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
..|+.||++.+.+.+.++.++ |+++++++||.|.++....... ......+.... +...+.+
T Consensus 173 ----------~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~----p~~r~~~ 236 (267)
T 3u5t_A 173 ----------GIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKS--DEVRDRFAKLA----PLERLGT 236 (267)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-------------CHHHHHTSS----TTCSCBC
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCC--HHHHHHHHhcC----CCCCCcC
Confidence 569999999999999999985 8999999999999876432111 11122222222 5567889
Q ss_pred HHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 230 IRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
++|+|+++++++... ..+|.. .+.|+
T Consensus 237 pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 237 PQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp HHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred HHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 999999999999754 346754 45443
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=204.56 Aligned_cols=213 Identities=22% Similarity=0.191 Sum_probs=159.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 79 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.. +....+ ..++.++++|++|+++++++++ +
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~g~ 79 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE----DVVADL---GDRARFAAADVTDEAAVASALDLAETMGT 79 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH----HHHHHT---CTTEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH----HHHHhc---CCceEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999998532 122222 3568999999999999888776 7
Q ss_pred CCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC-----------CccEEEEecchhhhccCCC
Q 020747 80 CDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH-----------SIKRVVLTSSIGAMLLNET 139 (322)
Q Consensus 80 ~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-----------~~~~~i~~SS~~~~~~~~~ 139 (322)
+|++||+||.... ...+.+++.+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 159 (257)
T 3tl3_A 80 LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIG 159 (257)
T ss_dssp EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHH
T ss_pred CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCC
Confidence 8999999996421 3345578899999999999999987642 3458999999865543221
Q ss_pred CCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHc
Q 020747 140 PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN 216 (322)
Q Consensus 140 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~ 216 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++..... ..........
T Consensus 160 ----------------------~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~ 214 (257)
T 3tl3_A 160 ----------------------QAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL---PEEARASLGK 214 (257)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC------CHHHHHHHHH
T ss_pred ----------------------CccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc---cHHHHHHHHh
Confidence 1569999999999999999874 89999999999999865432 1222222222
Q ss_pred CCCCCCCC-CcceeHHHHHHHHHHhhcCCCCCccE-EEec
Q 020747 217 GDQSFAFP-YIFVEIRDVVYAHIRALEVPKASGRY-LLAG 254 (322)
Q Consensus 217 g~~~~~~~-~~~i~~~D~a~~~~~~~~~~~~~g~~-~~~~ 254 (322)
.. +. ..+.+++|+|++++++++++..+|.. .+.|
T Consensus 215 ~~----~~~~r~~~p~dva~~v~~l~s~~~itG~~i~vdG 250 (257)
T 3tl3_A 215 QV----PHPSRLGNPDEYGALAVHIIENPMLNGEVIRLDG 250 (257)
T ss_dssp TS----SSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred cC----CCCCCccCHHHHHHHHHHHhcCCCCCCCEEEECC
Confidence 22 33 56889999999999999987778855 4443
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=206.83 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=159.1
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
|+.++++|+++||||+|+||++++++|+++|++|++++|+..... +...++.. ...++.++.+|++|+++++++++
T Consensus 1 M~~m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 79 (267)
T 2gdz_A 1 MAHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV-QCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRK 79 (267)
T ss_dssp -CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCcccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHH
Confidence 444567789999999999999999999999999999998753321 11122221 13468899999999998887765
Q ss_pred ------CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcC---C---ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH---S---IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ------~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~---~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||... .+.+.+.+++|+.++.++.+++.+.+ + .++||++||..++.+.+.
T Consensus 80 ~~~~~g~id~lv~~Ag~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 149 (267)
T 2gdz_A 80 VVDHFGRLDILVNNAGVNN---EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQ------- 149 (267)
T ss_dssp HHHHHSCCCEEEECCCCCC---SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTT-------
T ss_pred HHHHcCCCCEEEECCCCCC---hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCC-------
Confidence 4799999999753 35678899999998877766654421 1 478999999855543221
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHH--H---HcCccEEEEcCCCccCCCCCCCCCc--------cHHHHHH
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA--K---ENGIDLVAIHPGTVIGPFFQPILNF--------GAEVILN 213 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~--~---~~~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~ 213 (322)
...|+.||.+.+.+.+.++ . ..|+++++++||.+.++........ ....+..
T Consensus 150 ---------------~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 214 (267)
T 2gdz_A 150 ---------------QPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKD 214 (267)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHH
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHH
Confidence 1569999999999998753 2 3599999999999988743211000 0000000
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCc-cEEEec-CCCCHHH
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG-RYLLAG-SVAQHSD 261 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~-~~~~~~e 261 (322)
.. ....+++++|+|+++++++......| .+++.+ ...++.|
T Consensus 215 ~~-------~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~ 257 (267)
T 2gdz_A 215 MI-------KYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 257 (267)
T ss_dssp HH-------HHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred Hh-------ccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence 00 22346899999999999998766666 555653 4455443
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=199.34 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=156.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 82 (322)
.++|+|+||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++.+|++++++++++++ ++|+
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLK-SLGNAL---KDNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh---ccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 56799999999999999999999999999999999753321 111122 2468899999999999998887 6899
Q ss_pred EEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 83 VFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 83 vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------------- 152 (249)
T 3f9i_A 88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPG--------------- 152 (249)
T ss_dssp EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSC---------------
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCC---------------
Confidence 9999996532 345567899999999999999987543 14569999999866554332
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHH
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 231 (322)
...|+.||++.+.+++.++.+ .|+++++++||.|.++...... ......+..+. +...+.+++
T Consensus 153 -------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---~~~~~~~~~~~----~~~~~~~~~ 218 (249)
T 3f9i_A 153 -------QANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN---EKQREAIVQKI----PLGTYGIPE 218 (249)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC---HHHHHHHHHHC----TTCSCBCHH
T ss_pred -------CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC---HHHHHHHHhcC----CCCCCcCHH
Confidence 156999999999999999987 4899999999999998654321 22222333333 567789999
Q ss_pred HHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 232 DVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 232 D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
|+|+++++++... ...| .++++++
T Consensus 219 dva~~~~~l~s~~~~~~tG~~~~vdgG 245 (249)
T 3f9i_A 219 DVAYAVAFLASNNASYITGQTLHVNGG 245 (249)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHcCCccCCccCcEEEECCC
Confidence 9999999999764 3456 4566554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=207.18 Aligned_cols=222 Identities=16% Similarity=0.091 Sum_probs=160.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCC---cEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE---RLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++..... ++.++.+|++|+++++++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE-ETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999753321 12222222222 78999999999998887766
Q ss_pred ---CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccC-CCCCC
Q 020747 79 ---GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLN-ETPMT 142 (322)
Q Consensus 79 ---~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~-~~~~~ 142 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ + ++||++||..+..+. +.
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~--- 158 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPD--- 158 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCS---
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCCCc---
Confidence 68999999996432 2233467889999999999999987642 3 799999998554332 11
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCC-Ccc-----HHHHHH
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPIL-NFG-----AEVILN 213 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~-~~~-----~~~~~~ 213 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|+++...... ... ......
T Consensus 159 -------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~ 219 (280)
T 1xkq_A 159 -------------------FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMAS 219 (280)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHH
Confidence 156999999999999999876 4899999999999998533211 000 011111
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcCC---CCCccE-EEecC
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEVP---KASGRY-LLAGS 255 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~---~~~g~~-~~~~~ 255 (322)
+.... +...+.+++|+|+++++++..+ ...|.+ ++.++
T Consensus 220 ~~~~~----p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG 261 (280)
T 1xkq_A 220 HKECI----PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGG 261 (280)
T ss_dssp CTTTC----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred HHcCC----CCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCC
Confidence 11111 4456889999999999998753 456644 55543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=204.94 Aligned_cols=225 Identities=18% Similarity=0.107 Sum_probs=162.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..........++...+.++..+.+|++|+++++++++
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 106 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 106 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999875332111222222224568899999999998877664
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..+..+...
T Consensus 107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 173 (283)
T 1g0o_A 107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP------------- 173 (283)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS-------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCC-------------
Confidence 68999999996532 2344567889999999999999998863 4579999999855443221
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC-------C-CccHHHHHHHHc--CCC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI-------L-NFGAEVILNLIN--GDQ 219 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~-------~-~~~~~~~~~~~~--g~~ 219 (322)
....|+.||.+.+.+.+.++.+. |+++++++||.|.++..... . .........+.. ..
T Consensus 174 --------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (283)
T 1g0o_A 174 --------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS- 244 (283)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC-
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCC-
Confidence 01569999999999999998774 89999999999998742110 0 001122222222 22
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+...+.+++|+|+++++++... ...|.. .+.|+
T Consensus 245 ---p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG 280 (283)
T 1g0o_A 245 ---PLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 280 (283)
T ss_dssp ---TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 4456789999999999999753 356644 44443
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=202.67 Aligned_cols=221 Identities=18% Similarity=0.173 Sum_probs=160.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-ChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
+|+++||||+|+||++++++|+++|++|++++|+.... ..+...++...+.++.++++|++|+++++++++ +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999999999876431 112222232224578999999999998887776 7
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---Cc-cEEEEecchhhhccCCCCCCCCccccCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SI-KRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~-~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
+|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +. ++||++||..++.+.+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 150 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPI----------- 150 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTT-----------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCC-----------
Confidence 8999999996432 2334567899999999999999987642 45 79999999866544322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC--------CccHHHHHHHHcCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL--------NFGAEVILNLINGDQ 219 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~--------~~~~~~~~~~~~g~~ 219 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++...... .........+....
T Consensus 151 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (258)
T 3a28_C 151 -----------LSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSI- 218 (258)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTC-
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcC-
Confidence 1569999999999999998874 899999999999887422100 00001111222222
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
+...+.+++|+|+++++++... ...|.. .+.|
T Consensus 219 ---p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 253 (258)
T 3a28_C 219 ---ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDG 253 (258)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred ---CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECC
Confidence 3456889999999999999754 356644 4544
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=197.11 Aligned_cols=229 Identities=15% Similarity=0.148 Sum_probs=170.2
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|.-.+++|+++||||++.||+++++.|+++|.+|++.+|+.... +...++.....++..+++|++|+++++++++
T Consensus 1 M~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 1 MDLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG--AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH--HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH--HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 44457899999999999999999999999999999999987653 2333333335678999999999998877665
Q ss_pred ----CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 ----GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ----~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.|+..+++|+.++..+.+++.+.+ +.++||++||..+..+.+..
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~-------- 150 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGNT-------- 150 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSSC--------
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCCc--------
Confidence 68999999996422 3345678899999999999999987642 23689999999777655431
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc---cHHHHHHHHcCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF---GAEVILNLINGDQSFA 222 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~---~~~~~~~~~~g~~~~~ 222 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|..|........ .......+....
T Consensus 151 --------------~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---- 212 (258)
T 4gkb_A 151 --------------SGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKV---- 212 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTC----
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcC----
Confidence 569999999999999999874 99999999999998864432111 111222333222
Q ss_pred CC-CcceeHHHHHHHHHHhhcCC--CCCccEEEecCCCC
Q 020747 223 FP-YIFVEIRDVVYAHIRALEVP--KASGRYLLAGSVAQ 258 (322)
Q Consensus 223 ~~-~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 258 (322)
+. +.+..++|+|+++++++... ..+|..+..++.+|
T Consensus 213 plg~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~T 251 (258)
T 4gkb_A 213 PLGRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGYT 251 (258)
T ss_dssp TTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCcc
Confidence 23 46778999999999998653 46786655544443
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=203.01 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=164.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+++|++|+++++++++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQ-VVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH-HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56799999999999999999999999999999999764432 2223333334578899999999999888776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.+++.+++|+.|+.++++++.+.+ + .++||++||..+..+...
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~---------- 178 (276)
T 3r1i_A 109 GIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIP---------- 178 (276)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCS----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCC----------
Confidence 78999999997532 2344567788999999999999987642 2 268999999865543211
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...+.|+.||.+.+.+.+.++.+ .|+++++++||.|.++..... . .......... +...
T Consensus 179 ----------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~---~~~~~~~~~~----p~~r 240 (276)
T 3r1i_A 179 ----------QQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-A---DYHALWEPKI----PLGR 240 (276)
T ss_dssp ----------SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-G---GGHHHHGGGS----TTSS
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-h---HHHHHHHhcC----CCCC
Confidence 01156999999999999999988 489999999999999865432 1 1122222222 4566
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+.+++|+|+++++++... ..+|.. ++.|+
T Consensus 241 ~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 272 (276)
T 3r1i_A 241 MGRPEELTGLYLYLASAASSYMTGSDIVIDGG 272 (276)
T ss_dssp CBCGGGSHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHcCccccCccCcEEEECcC
Confidence 789999999999999753 356744 55544
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=202.43 Aligned_cols=211 Identities=18% Similarity=0.105 Sum_probs=158.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+...... ...+.+|++|.++++++++
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~------------~~~~~~Dv~~~~~~~~~~~~~~~~~g 93 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA------------DLHLPGDLREAAYADGLPGAVAAGLG 93 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC------------SEECCCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh------------hhccCcCCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999987654321 1345799999988776654
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 162 (266)
T 3uxy_A 94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPG----------- 162 (266)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCC-----------
Confidence 68999999997532 334456788999999999999998432 15679999999866554332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC----CccHHHHHHHHcCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL----NFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~----~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++...... .........+.... +
T Consensus 163 -----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~----p 227 (266)
T 3uxy_A 163 -----------HALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV----P 227 (266)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS----T
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC----C
Confidence 1569999999999999999885 899999999999987532100 01111222333333 5
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCcc-EEEec
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGR-YLLAG 254 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~ 254 (322)
...+.+++|+|+++++++... ..+|. +++.|
T Consensus 228 ~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 261 (266)
T 3uxy_A 228 LGRIAEPEDIADVVLFLASDAARYLCGSLVEVNG 261 (266)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence 677889999999999999764 34574 45554
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=203.59 Aligned_cols=221 Identities=20% Similarity=0.139 Sum_probs=161.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+........+...+.++.++++|++|+++++++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 106 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG 106 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 5578999999999999999999999999999999965432222222222234578999999999998887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.++||++||..+..+.+..
T Consensus 107 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 176 (271)
T 4iin_A 107 GLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQ---------- 176 (271)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC----------
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCc----------
Confidence 78999999997533 2334567899999999999999886531 45799999998776554321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||++.+.+++.++.+ .|+++++++||.|.++....... .......... +...+
T Consensus 177 ------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~~~~~~~~~~----~~~~~ 237 (271)
T 4iin_A 177 ------------TNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKD---ELKADYVKNI----PLNRL 237 (271)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------CGGGC----TTCSC
T ss_pred ------------hHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcH---HHHHHHHhcC----CcCCC
Confidence 56999999999999999987 48999999999999876432111 1111111111 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
.+++|+|+++++++... ...|.. ++.|+
T Consensus 238 ~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG 268 (271)
T 4iin_A 238 GSAKEVAEAVAFLLSDHSSYITGETLKVNGG 268 (271)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCCCcCCCcCCEEEeCCC
Confidence 89999999999999753 346644 55543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=201.23 Aligned_cols=221 Identities=14% Similarity=0.187 Sum_probs=158.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.. ..++.++.+|++|+++++++++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE-KAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhhc-cCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 366799999999999999999999999999999998753221 11222221 2568999999999998887776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCc-cEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSI-KRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~-~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
.+|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+. ++||++||..++.+.+.
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--------- 151 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPS--------- 151 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTT---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCC---------
Confidence 48999999996532 122345678999999998887776542 145 79999999865543321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+++.++.+ .|++++++|||.++++..... .. ........... +
T Consensus 152 -------------~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~-~~~~~~~~~~~----~ 212 (251)
T 1zk4_A 152 -------------LGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL-PG-AEEAMSQRTKT----P 212 (251)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS-TT-HHHHHTSTTTC----T
T ss_pred -------------CccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhc-Cc-hhhhHHHhhcC----C
Confidence 156999999999999988864 489999999999999864321 11 11111111111 4
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
...+++++|+|+++++++... ...| .+++.++
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 247 (251)
T 1zk4_A 213 MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 456899999999999999753 2356 4555543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=202.98 Aligned_cols=223 Identities=17% Similarity=0.129 Sum_probs=160.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... +.++..+.+|++|+++++++++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLE-ASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999753321 111222111 3468899999999999887776
Q ss_pred --CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+++.+++|+.|+.++++++.+.+ +.++||++||..++.+.+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 161 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGN-------- 161 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSS--------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCC--------
Confidence 68999999996422 2334567899999999998877765421 5689999999866543321
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC----CCcc-HHHHHHHHcCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI----LNFG-AEVILNLINGDQ 219 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~----~~~~-~~~~~~~~~g~~ 219 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.++++..... .... ......+....
T Consensus 162 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 226 (267)
T 1iy8_A 162 --------------QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN- 226 (267)
T ss_dssp --------------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred --------------CccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC-
Confidence 1569999999999999998874 89999999999998753210 0011 11111222222
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+...+.+++|+|+++++++..+ ...|.. .+.|+
T Consensus 227 ---p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG 262 (267)
T 1iy8_A 227 ---PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG 262 (267)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 3456889999999999998754 346644 55443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=202.85 Aligned_cols=221 Identities=16% Similarity=0.086 Sum_probs=166.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||+++++.|+++|++|++.+|+..... +..+++...+.++..+++|++|+++++++++
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~-~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLA-ESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHH-HHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 57899999999999999999999999999999998754322 3334444445678999999999999887765
Q ss_pred CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||... +.+.+.|++.+++|+.|+..+.+++.+.+ +..+||++||..+..+.+..
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~--------- 156 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTV--------- 156 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTC---------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCc---------
Confidence 5799999999643 24556788999999999999999876532 44699999999766554431
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.||.+...+.+.++.++ |++++.|.||.|..+....... .......+.... +...
T Consensus 157 -------------~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~-~~~~~~~~~~~~----Pl~R 218 (255)
T 4g81_D 157 -------------APYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIE-DKQFDSWVKSST----PSQR 218 (255)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHT-CHHHHHHHHHHS----TTCS
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccC-CHHHHHHHHhCC----CCCC
Confidence 569999999999999999884 9999999999999875322111 111122222222 4456
Q ss_pred ceeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 227 FVEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
+..++|+|+++++++.. ...+|..+..+
T Consensus 219 ~g~pediA~~v~fL~S~~a~~iTG~~i~VD 248 (255)
T 4g81_D 219 WGRPEELIGTAIFLSSKASDYINGQIIYVD 248 (255)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCCEEEEC
Confidence 77899999999999964 34677554443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=211.42 Aligned_cols=227 Identities=14% Similarity=0.210 Sum_probs=162.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChh---hhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTE---HLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+|+|+|||||||||++++++|+++|++|++++|+.+....+ .+..+. ..+++.+.+|++|++++.++++++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~~~~d~vi 81 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQVDVVI 81 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999999986542111 111121 2468899999999999999999999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
|+|+.... ..|+.++.+++++|++. + +++||+ |+. +... ..+ +.+..|. .+
T Consensus 82 ~~a~~~~~----------~~~~~~~~~l~~aa~~~-g~v~~~v~-S~~----g~~~----~~~---~~~~~p~-----~~ 133 (313)
T 1qyd_A 82 SALAGGVL----------SHHILEQLKLVEAIKEA-GNIKRFLP-SEF----GMDP----DIM---EHALQPG-----SI 133 (313)
T ss_dssp ECCCCSSS----------STTTTTHHHHHHHHHHS-CCCSEEEC-SCC----SSCT----TSC---CCCCSST-----TH
T ss_pred ECCccccc----------hhhHHHHHHHHHHHHhc-CCCceEEe-cCC----cCCc----ccc---ccCCCCC-----cc
Confidence 99986432 12677889999999998 7 999985 432 2221 111 1111121 14
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHI 238 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~ 238 (322)
.| .+|..+|++++ +.+++++++||+.++|+.......... .....+. .+++ ..++++|++|+|++++
T Consensus 134 ~y-~sK~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~ 205 (313)
T 1qyd_A 134 TF-IDKRKVRRAIE----AASIPYTYVSSNMFAGYFAGSLAQLDG---HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTI 205 (313)
T ss_dssp HH-HHHHHHHHHHH----HTTCCBCEEECCEEHHHHTTTSSCTTC---CSSCCSSEECCBTTSCSEEEEECHHHHHHHHH
T ss_pred hH-HHHHHHHHHHH----hcCCCeEEEEeceeccccccccccccc---cccCCCCeEEEeCCCCceEEEEEHHHHHHHHH
Confidence 58 99999999885 469999999999998864322111000 0001122 2222 6689999999999999
Q ss_pred HhhcCCCC-CccEEE-e-cCCCCHHHHHHHHHHhCCC
Q 020747 239 RALEVPKA-SGRYLL-A-GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 239 ~~~~~~~~-~g~~~~-~-~~~~~~~e~~~~i~~~~~~ 272 (322)
.++.++.. ++.|++ + ++.+|+.|+++.+.+..|.
T Consensus 206 ~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 242 (313)
T 1qyd_A 206 KSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 242 (313)
T ss_dssp HHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred HHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCC
Confidence 99988653 345544 4 3689999999999998864
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=203.43 Aligned_cols=220 Identities=15% Similarity=-0.001 Sum_probs=163.8
Q ss_pred CCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+| +||++++++|+++|++|++++|+.... +.+.++......+.++++|++|+++++++++
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFK--KRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHH--HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999999997 999999999999999999999985322 2222221112346889999999999887776
Q ss_pred --CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 --GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 --~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|++||+||... ....+.+...+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~------- 178 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPH------- 178 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTT-------
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCC-------
Confidence 6899999999753 233446778999999999999999988632 359999999866554332
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++..... .............. +
T Consensus 179 ---------------~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~----p 238 (296)
T 3k31_A 179 ---------------YNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-SDFHYILTWNKYNS----P 238 (296)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-HHHHHHHHHHHHHS----T
T ss_pred ---------------chhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-cchHHHHHHHHhcC----C
Confidence 1569999999999999999875 89999999999999865432 11112222222222 4
Q ss_pred CCcceeHHHHHHHHHHhhcC--CCCCccE-EEec
Q 020747 224 PYIFVEIRDVVYAHIRALEV--PKASGRY-LLAG 254 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~--~~~~g~~-~~~~ 254 (322)
...+..++|+|+++++++.. ...+|.. ++.|
T Consensus 239 ~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 272 (296)
T 3k31_A 239 LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDC 272 (296)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCCCHHHHHHHHHHHcCCccCCccCCEEEECC
Confidence 45678899999999999975 3456744 5554
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=202.40 Aligned_cols=221 Identities=18% Similarity=0.130 Sum_probs=160.6
Q ss_pred CCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 4 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
..+++|+++||||+|+||++++++|+++|++|++++|+..... ....++...+.++..+++|++|+++++++++
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE-KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 81 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999998753321 1222232234578999999999998877665
Q ss_pred --CCCEEEEcccCc-c-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPV-I-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~-~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.. . ....+.+...+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 153 (262)
T 1zem_A 82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPN-------- 153 (262)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTT--------
T ss_pred hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCC--------
Confidence 789999999964 2 12334567899999999999999987642 4579999999866654332
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC------------CCccHH-HH
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI------------LNFGAE-VI 211 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~------------~~~~~~-~~ 211 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++..... ...... ..
T Consensus 154 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (262)
T 1zem_A 154 --------------MAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVA 219 (262)
T ss_dssp --------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHH
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHH
Confidence 1569999999999999998764 89999999999988742210 000011 11
Q ss_pred HHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEE
Q 020747 212 LNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYL 251 (322)
Q Consensus 212 ~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~ 251 (322)
..+.... +...+..++|+|+++++++... ..+|..+
T Consensus 220 ~~~~~~~----p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i 257 (262)
T 1zem_A 220 QQMIGSV----PMRRYGDINEIPGVVAFLLGDDSSFMTGVNL 257 (262)
T ss_dssp HHHHHTS----TTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE
T ss_pred HHHHhcC----CCCCCcCHHHHHHHHHHHcCchhcCcCCcEE
Confidence 1122222 3445788999999999998753 3466443
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=203.67 Aligned_cols=220 Identities=18% Similarity=0.157 Sum_probs=159.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+++|++|+++++++++ ++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK-AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 489999999999999999999999999999998753321 1222222223568899999999999888776 78
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
|+|||+||.... ...+.++..+++|+.++.++++++.+.+ + .++||++||..++++.+.
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------ 148 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPE------------ 148 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC------------
Confidence 999999996432 2334566789999999999998887642 3 579999999866654332
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC---c-----cHHHHHHHHcCCCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN---F-----GAEVILNLINGDQS 220 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~---~-----~~~~~~~~~~g~~~ 220 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++....... . .......+....
T Consensus 149 ----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (256)
T 1geg_A 149 ----------LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI-- 216 (256)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC--
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcC--
Confidence 1569999999999999998874 8999999999999875221000 0 000111122211
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
+...+.+++|+|+++++++..+ ...|.. .+.+
T Consensus 217 --p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG 251 (256)
T 1geg_A 217 --TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG 251 (256)
T ss_dssp --TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred --CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence 3456889999999999999754 346644 4444
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=204.81 Aligned_cols=217 Identities=19% Similarity=0.165 Sum_probs=138.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.....++.++.+|++|+++++++++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAE-AVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56799999999999999999999999999999998754322 2222222234678999999999999888776
Q ss_pred CCCEEEEcccCcc--------cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 GCDGVFHTASPVI--------FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ~~d~vih~A~~~~--------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||... ....+.+.+.+++|+.++.++++++.+. .+.++||++||..++. ..
T Consensus 86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-~~--------- 155 (253)
T 3qiv_A 86 GIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL-YS--------- 155 (253)
T ss_dssp CCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred CCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC-CC---------
Confidence 7899999999732 1233446689999999988887776543 1457899999985441 11
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
+.|+.||++.+.+++.++.++ |+++++++||.|+++....... ......+..+. +.
T Consensus 156 ---------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~----~~ 214 (253)
T 3qiv_A 156 ---------------NYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTP--KEMVDDIVKGL----PL 214 (253)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCc--HHHHHHHhccC----CC
Confidence 349999999999999999986 8999999999999986443211 11122222222 45
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
..+.+++|+|+++++++... ...| .|++++
T Consensus 215 ~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg 247 (253)
T 3qiv_A 215 SRMGTPDDLVGMCLFLLSDEASWITGQIFNVDG 247 (253)
T ss_dssp -----CCHHHHHHHHHHSGGGTTCCSCEEEC--
T ss_pred CCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence 56778999999999999753 2356 555554
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=202.99 Aligned_cols=226 Identities=20% Similarity=0.150 Sum_probs=164.5
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-------Ch----hhhhhccCCCCcEEEEEccCCCc
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-------KT----EHLRELDGATERLHLFKANLLEE 70 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~----~~~~~~~~~~~~~~~~~~Dl~~~ 70 (322)
|+..+++|+++||||+|+||++++++|+++|++|++++|+.... .. +...++...+.++..+++|++|+
T Consensus 22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 101 (299)
T 3t7c_A 22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDF 101 (299)
T ss_dssp CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 44456789999999999999999999999999999999874311 01 11222222346789999999999
Q ss_pred cchHHhhC-------CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhh
Q 020747 71 GSFDSAVD-------GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGA 133 (322)
Q Consensus 71 ~~~~~~~~-------~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~ 133 (322)
++++++++ ++|++||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..+
T Consensus 102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~ 181 (299)
T 3t7c_A 102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhh
Confidence 99887776 68999999996432 2334567899999999999999976541 3579999999866
Q ss_pred hccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC------
Q 020747 134 MLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL------ 204 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~------ 204 (322)
+.+.+. ...|+.||++.+.+.+.++.++ |+++++++||.|.++......
T Consensus 182 ~~~~~~----------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~ 239 (299)
T 3t7c_A 182 LRGAEN----------------------IGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFR 239 (299)
T ss_dssp TSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHC
T ss_pred ccCCCC----------------------cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhh
Confidence 654332 1569999999999999999885 899999999999998643210
Q ss_pred -----CccHHH--HHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 205 -----NFGAEV--ILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 205 -----~~~~~~--~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
...... ........ + ..+.+++|+|+++++++... ..+|.. ++.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~----p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG 294 (299)
T 3t7c_A 240 PDLENPTVEDFQVASRQMHVL----P-IPYVEPADISNAILFLVSDDARYITGVSLPVDG 294 (299)
T ss_dssp TTSSSCCHHHHHHHHHHHSSS----S-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred hhhccchhhHHHHHhhhhccc----C-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCC
Confidence 000000 00011110 2 56889999999999999754 356744 4544
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=201.07 Aligned_cols=221 Identities=16% Similarity=0.167 Sum_probs=164.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.++|+||||||+|+||++++++|+++|++|++++++..........++.....++..+.+|++|+++++++++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 90 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG 90 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 4579999999999999999999999999999988554443333333333334578999999999998887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 91 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 159 (256)
T 3ezl_A 91 EIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFG----------- 159 (256)
T ss_dssp CEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSC-----------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCC-----------
Confidence 67999999997532 223456679999999999998887542 15579999999866654432
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||++.+.+++.++.+ .|+++++++||.+.++..... .......+.... +...+
T Consensus 160 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~----~~~~~ 221 (256)
T 3ezl_A 160 -----------QTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI---RPDVLEKIVATI----PVRRL 221 (256)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHHHS----TTSSC
T ss_pred -----------CcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc---CHHHHHHHHhcC----CCCCC
Confidence 156999999999999999987 489999999999998764332 122333333333 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
.+++|+|+++++++... ..+|. +++.|+
T Consensus 222 ~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (256)
T 3ezl_A 222 GSPDEIGSIVAWLASEESGFSTGADFSLNGG 252 (256)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence 89999999999998643 35664 455543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=199.68 Aligned_cols=219 Identities=18% Similarity=0.102 Sum_probs=162.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ +.++..+++|++|+++++++++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAK-AAAASI---GKKARAIAADISDPGSVKALFAEIQALT 78 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 367899999999999999999999999999999988753321 122222 3568999999999999888776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+ + .++||++||..+..+.+..
T Consensus 79 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~-------- 150 (247)
T 3rwb_A 79 GGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNM-------- 150 (247)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTC--------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCc--------
Confidence 68999999996532 2344567899999999999999854321 3 5799999998666554321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.||.+.+.+.+.++.+ +|+++++++||.|.++............+..... +..
T Consensus 151 --------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~------~~~ 210 (247)
T 3rwb_A 151 --------------AAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQ------AMK 210 (247)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHS------SSC
T ss_pred --------------hhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhccc------ccC
Confidence 56999999999999999988 5999999999999987533211111111111111 445
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
.+.+++|+|+++++++... ..+|.. ++.|+
T Consensus 211 r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG 243 (247)
T 3rwb_A 211 GKGQPEHIADVVSFLASDDARWITGQTLNVDAG 243 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 6678999999999999764 356754 55543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=201.40 Aligned_cols=220 Identities=16% Similarity=0.159 Sum_probs=162.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...+. ..++..+++|++|+++++++++
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAV-RVANEI---GSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998753321 111221 3568999999999999887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.++..+++|+.|+.++++++.+.+ +.++||++||..++.+.+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 169 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIAD----------- 169 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTT-----------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCC-----------
Confidence 68999999996432 2234567788999999999999986532 4569999999866543322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC---CCccHHHHHHHHcCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI---LNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++..... ............... +.
T Consensus 170 -----------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----~~ 234 (277)
T 4dqx_A 170 -----------RTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARA----VM 234 (277)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTS----TT
T ss_pred -----------ChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcC----cc
Confidence 1569999999999999999875 89999999999988751110 011111122223332 55
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
..+.+++|+|+++++++... ..+|. +++.|+
T Consensus 235 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 268 (277)
T 4dqx_A 235 DRMGTAEEIAEAMLFLASDRSRFATGSILTVDGG 268 (277)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCc
Confidence 67889999999999999754 34664 455543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=197.88 Aligned_cols=214 Identities=16% Similarity=0.100 Sum_probs=157.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+.+|++|+++++++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA-ATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 356799999999999999999999999999999998753221 111222 3468899999999999888776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 147 (254)
T 1hdc_A 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLAL---------- 147 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCC----------
Confidence 79999999996432 233456789999999999766665432 15689999999866543321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC--
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-- 222 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-- 222 (322)
...|+.||.+.+.+.+.++.++ |++++++|||.++++.... ..... ....
T Consensus 148 ------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----------~~~~~~~~~~~~~ 204 (254)
T 1hdc_A 148 ------------TSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAE-----------TGIRQGEGNYPNT 204 (254)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----------HTCCCSTTSCTTS
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccc-----------cchhHHHHHHhcC
Confidence 1569999999999999998874 8999999999999874211 00000 1111
Q ss_pred CCCcce-eHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 223 FPYIFV-EIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 223 ~~~~~i-~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+...+. +++|+|+++++++..+ ...|.+ .+.++
T Consensus 205 p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 241 (254)
T 1hdc_A 205 PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGG 241 (254)
T ss_dssp TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCC
Confidence 334577 9999999999998754 345644 55543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=199.12 Aligned_cols=220 Identities=13% Similarity=0.043 Sum_probs=164.9
Q ss_pred CCCcEEEEECCcch--hHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGF--VASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+|+||||+|+ ||++++++|+++|++|++++|+. ..+.++++.....++.++.+|++|+++++++++
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~---~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ---FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKV 100 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT---CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch---HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 56799999999966 99999999999999999999986 223333333223458899999999998887765
Q ss_pred --CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCC
Q 020747 79 --GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 --~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..++.+.+.
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 175 (280)
T 3nrc_A 101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPS----- 175 (280)
T ss_dssp CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTT-----
T ss_pred cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCC-----
Confidence 57999999997532 3344566789999999999999987642 3469999999866654332
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
.+.|+.||++.+.+++.++.+ .|+++++++||.|.++...... .............
T Consensus 176 -----------------~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~--- 234 (280)
T 3nrc_A 176 -----------------YNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS-NFKKMLDYNAMVS--- 234 (280)
T ss_dssp -----------------THHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT-THHHHHHHHHHHS---
T ss_pred -----------------chhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc-chHHHHHHHHhcC---
Confidence 156999999999999999987 4899999999999998654322 1222233322222
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
+...+.+++|+|+++++++... ..+|. +++.++
T Consensus 235 -p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG 270 (280)
T 3nrc_A 235 -PLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAG 270 (280)
T ss_dssp -TTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred -CCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCC
Confidence 4566788999999999999753 35674 455543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=199.42 Aligned_cols=220 Identities=16% Similarity=0.110 Sum_probs=159.1
Q ss_pred CCCcEEEEECCcc-hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASG-FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+| .||++++++|+++|++|++++|+..... +...++.. ...++.++++|++|+++++++++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLG-ETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5679999999998 6999999999999999999999764322 22222222 23579999999999999887775
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC----CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH----SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~----~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------- 170 (266)
T 3o38_A 99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHS-------- 170 (266)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTT--------
T ss_pred hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCC--------
Confidence 67999999996432 2334567889999999999999987641 4468999999866544332
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||++.+.+++.++.+ .|+++++++||.|.++....... ......+.... +.
T Consensus 171 --------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~----~~ 230 (266)
T 3o38_A 171 --------------QSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--SELLDRLASDE----AF 230 (266)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------CC----TT
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--HHHHHHHHhcC----Cc
Confidence 156999999999999999987 58999999999999886432211 11111222222 56
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
..+.+++|+|+++++++... ..+|.+ ++++
T Consensus 231 ~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg 263 (266)
T 3o38_A 231 GRAAEPWEVAATIAFLASDYSSYMTGEVVSVSS 263 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CCCCCHHHHHHHHHHHcCccccCccCCEEEEcC
Confidence 67889999999999998753 356744 5554
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=203.31 Aligned_cols=221 Identities=14% Similarity=0.015 Sum_probs=161.7
Q ss_pred CCCcEEEEECCcch--hHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGF--VASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+|+ ||++++++|+++|++|++++|+.... +.+.++.....++.++++|++|+++++++++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALK--KRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHH--HHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHH--HHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 56799999999988 99999999999999999999874211 2222222112458899999999999887776
Q ss_pred --CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 --GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 --~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|++||+||... ....+.+...+++|+.++.++++++.+.+ ..++||++||..+..+.+.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~------- 179 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPN------- 179 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTT-------
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCc-------
Confidence 6899999999753 23345567899999999999999998753 2359999999866654332
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++...... ............. +
T Consensus 180 ---------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~----p 239 (293)
T 3grk_A 180 ---------------YNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG-DFRYILKWNEYNA----P 239 (293)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C-CHHHHHHHHHHHS----T
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc-chHHHHHHHHhcC----C
Confidence 1569999999999999999874 899999999999998644321 1122222222222 4
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...+.+++|+|+++++++... ..+|.+ ++.|+
T Consensus 240 ~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 274 (293)
T 3grk_A 240 LRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSG 274 (293)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCcceEEEECCC
Confidence 566788999999999999753 456755 55543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=207.84 Aligned_cols=223 Identities=16% Similarity=0.120 Sum_probs=159.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+++|++|+++++++++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAAD-AAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAF 101 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHHc
Confidence 466799999999999999999999999999999998753321 122222 3568899999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..+..+.+.
T Consensus 102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~---------- 171 (277)
T 3gvc_A 102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGG---------- 171 (277)
T ss_dssp SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCC----------
Confidence 68999999997532 233456789999999999999998653 24578999999866554332
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccH-HHHHHHHcCCCCCC-CC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGA-EVILNLINGDQSFA-FP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~-~~~~~~~~g~~~~~-~~ 224 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|+++.......... ........ .... ..
T Consensus 172 ------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 237 (277)
T 3gvc_A 172 ------------TGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGAR--SMIARLQ 237 (277)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CCHH--HHHHHHH
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHhhh--hhhhccc
Confidence 156999999999999999887 48999999999999874211000000 00000000 0000 23
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
..+.+++|+|+++++++... ..+|. +++.|+
T Consensus 238 ~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG 271 (277)
T 3gvc_A 238 GRMAAPEEMAGIVVFLLSDDASMITGTTQIADGG 271 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCCHHHHHHHHHHHcCCccCCccCcEEEECCc
Confidence 45788999999999999653 45674 455543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=198.97 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=164.1
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
|...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.. ....+..+.+|++++++++++++
T Consensus 4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 82 (267)
T 3t4x_A 4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVN-ETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK 82 (267)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh
Confidence 444467799999999999999999999999999999999764322 12222211 13467889999999998888776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.+++.+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--------- 153 (267)
T 3t4x_A 83 YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQE--------- 153 (267)
T ss_dssp CCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTT---------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCc---------
Confidence 78999999997532 233456678999999999988877653 25679999999866644332
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCC-------C-CCccHHHHHHHHcC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQP-------I-LNFGAEVILNLING 217 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~-------~-~~~~~~~~~~~~~g 217 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++.... . ..............
T Consensus 154 -------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (267)
T 3t4x_A 154 -------------MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKE 220 (267)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhc
Confidence 1569999999999999999875 7999999999998873211 0 00111111111111
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
.....+...+.+++|+|+++++++... ..+| .+++.|+
T Consensus 221 ~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 261 (267)
T 3t4x_A 221 NRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGG 261 (267)
T ss_dssp HCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 100004567899999999999998743 4567 4455543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=207.86 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=159.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-----CCCcEEEEEccCCCccchHHhhC-
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
.+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.. ...++.++++|++|+++++++++
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLK-SAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999753321 11111111 24578999999999999888776
Q ss_pred ------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 ------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||.. .++.+.
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~----- 167 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPL----- 167 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTT-----
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCc-----
Confidence 48999999995421 223345678999999999999998662 1346899999984 433221
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc-cHHHHHHHHcCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF-GAEVILNLINGDQS 220 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~~~~g~~~ 220 (322)
...|+.+|.+.+.+.+.++.++ |++++++|||.++|+........ .......+....
T Consensus 168 -----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-- 228 (303)
T 1yxm_A 168 -----------------AVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI-- 228 (303)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS--
T ss_pred -----------------chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC--
Confidence 1459999999999999999885 89999999999999842111110 011111111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
+...+.+++|+|+++++++... ...|. +++.++
T Consensus 229 --p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG 264 (303)
T 1yxm_A 229 --PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG 264 (303)
T ss_dssp --TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCC
Confidence 3456889999999999999753 34564 455544
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=196.64 Aligned_cols=186 Identities=17% Similarity=0.126 Sum_probs=145.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC---CCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG---CDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~d~vih 85 (322)
|+|+||||+|+||++++++|+ +|++|++++|+.. .+.+|++|++++++++++ +|+|||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~------------------~~~~D~~~~~~~~~~~~~~~~~d~vi~ 64 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG------------------DVTVDITNIDSIKKMYEQVGKVDAIVS 64 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS------------------SEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc------------------ceeeecCCHHHHHHHHHHhCCCCEEEE
Confidence 479999999999999999999 9999999998752 367999999999888875 899999
Q ss_pred cccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 86 TASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 86 ~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
+||.... ...+.+.+.+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 65 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~~-------------------- 124 (202)
T 3d7l_A 65 ATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQ-------------------- 124 (202)
T ss_dssp CCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCCTT--------------------
T ss_pred CCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCCCc--------------------
Confidence 9996432 12233457789999999999999987521 268999999855432221
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAH 237 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~ 237 (322)
...|+.+|.+.|.+++.++.+. |++++++|||.++++... ...+. +.+++++++|+|+++
T Consensus 125 --~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~------------~~~~~----~~~~~~~~~dva~~~ 186 (202)
T 3d7l_A 125 --GASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK------------LEPFF----EGFLPVPAAKVARAF 186 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH------------HGGGS----TTCCCBCHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh------------hhhhc----cccCCCCHHHHHHHH
Confidence 1569999999999999998764 999999999999997521 11111 457789999999999
Q ss_pred HHhhcCCCCCc-cEEE
Q 020747 238 IRALEVPKASG-RYLL 252 (322)
Q Consensus 238 ~~~~~~~~~~g-~~~~ 252 (322)
+.++... ..| .|++
T Consensus 187 ~~~~~~~-~~G~~~~v 201 (202)
T 3d7l_A 187 EKSVFGA-QTGESYQV 201 (202)
T ss_dssp HHHHHSC-CCSCEEEE
T ss_pred HHhhhcc-ccCceEec
Confidence 9988543 344 5554
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=198.38 Aligned_cols=213 Identities=20% Similarity=0.236 Sum_probs=155.0
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|...+++|+++||||+|+||++++++|+++|++|++++|+..... ....++...+.++..+.+|++|+++++++++
T Consensus 1 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 79 (247)
T 2jah_A 1 MPSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLR-ALGDELTAAGAKVHVLELDVADRQGVDAAVASTV 79 (247)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 334467799999999999999999999999999999999753321 1222222223568899999999998887765
Q ss_pred ----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 ----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ + ++||++||..+..+.+.
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~------- 151 (247)
T 2jah_A 80 EALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRN------- 151 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCTT-------
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCCC-------
Confidence 78999999996432 1233466789999999999999987542 4 79999999866543321
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++....... .. ........+ .
T Consensus 152 ---------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~-~~~~~~~~~---~ 210 (247)
T 2jah_A 152 ---------------AAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH--TA-TKEMYEQRI---S 210 (247)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC--HH-HHHHHHHHT---T
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc--hh-hHHHHHhcc---c
Confidence 1569999999999999998774 8999999999999886432111 11 111111000 1
Q ss_pred CCcceeHHHHHHHHHHhhcCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~ 244 (322)
...+++++|+|+++++++..+
T Consensus 211 ~~~~~~pedvA~~v~~l~s~~ 231 (247)
T 2jah_A 211 QIRKLQAQDIAEAVRYAVTAP 231 (247)
T ss_dssp TSCCBCHHHHHHHHHHHHHSC
T ss_pred ccCCCCHHHHHHHHHHHhCCC
Confidence 112589999999999999864
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=200.76 Aligned_cols=231 Identities=16% Similarity=0.074 Sum_probs=163.8
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|+...+++|+++||||+|+||++++++|+++|++|++++|+..... +...++. ....++..+++|++|+++++++++
T Consensus 1 M~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLR-AAESALRQRFPGARLFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp --CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHH
Confidence 4444567899999999999999999999999999999999754322 1122221 112358999999999998887765
Q ss_pred -------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCC
Q 020747 79 -------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTP 143 (322)
Q Consensus 79 -------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~ 143 (322)
++|++||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 80 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---- 155 (265)
T 3lf2_A 80 ACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPH---- 155 (265)
T ss_dssp HHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTT----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCC----
Confidence 68999999996432 2334567899999999999999986532 4568999999866654332
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC------ccHHHHHHH
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN------FGAEVILNL 214 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~------~~~~~~~~~ 214 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++....... .....+...
T Consensus 156 ------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (265)
T 3lf2_A 156 ------------------MVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQ 217 (265)
T ss_dssp ------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHH
T ss_pred ------------------chhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHH
Confidence 1569999999999999999885 8999999999999874221100 011111111
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
....... +...+.+++|+|+++++++... ..+|.. .+.|+
T Consensus 218 ~~~~~~~-p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 260 (265)
T 3lf2_A 218 LARNKQI-PLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGG 260 (265)
T ss_dssp HHHHTTC-TTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSS
T ss_pred HhhccCC-CcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCC
Confidence 1110000 4566789999999999999753 456754 45443
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=201.97 Aligned_cols=210 Identities=17% Similarity=0.206 Sum_probs=151.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+.+|++|+++++++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIE-AIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34689999999999999999999999999999998754321 2222232234678899999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..++.+.+..
T Consensus 81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~---------- 150 (264)
T 3tfo_A 81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTA---------- 150 (264)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTC----------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCC----------
Confidence 68999999996432 2344567899999999999999876532 45799999998666543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
..|+.||++.+.+.+.++.+. |+++++++||.|.++......... ...... . ....+.+
T Consensus 151 ------------~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~---~~~~~~-~----~~~~~~~ 210 (264)
T 3tfo_A 151 ------------AVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEE---TMAAMD-T----YRAIALQ 210 (264)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------------CCC
T ss_pred ------------hhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchh---HHHHHH-h----hhccCCC
Confidence 569999999999999999886 999999999999887643211100 000000 0 1122478
Q ss_pred HHHHHHHHHHhhcCCCC
Q 020747 230 IRDVVYAHIRALEVPKA 246 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~ 246 (322)
++|+|++++++++.+..
T Consensus 211 pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 211 PADIARAVRQVIEAPQS 227 (264)
T ss_dssp HHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999999999988653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=206.76 Aligned_cols=222 Identities=14% Similarity=0.066 Sum_probs=162.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhh-hhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHL-RELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+......+.+ ..+...+.++.++++|++|+++++++++
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999998886432111111 1122224678999999999998887765
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+. .++||++||..++.+.+.
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~----------- 195 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPH----------- 195 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTT-----------
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCC-----------
Confidence 68999999996431 23445678999999999999999988632 249999999966554332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|+++....... .......+.... +...+
T Consensus 196 -----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~----p~~r~ 259 (294)
T 3r3s_A 196 -----------LLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ-TQDKIPQFGQQT----PMKRA 259 (294)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTS-CGGGSTTTTTTS----TTSSC
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCC-CHHHHHHHHhcC----CCCCC
Confidence 1569999999999999999886 8999999999999975211100 000011111111 55678
Q ss_pred eeHHHHHHHHHHhhcCC--CCCc-cEEEec
Q 020747 228 VEIRDVVYAHIRALEVP--KASG-RYLLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g-~~~~~~ 254 (322)
.+++|+|+++++++... ..+| .+++.|
T Consensus 260 ~~p~dvA~~v~~L~s~~~~~itG~~i~vdG 289 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQESSYVTAEVHGVCG 289 (294)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence 89999999999998653 3556 445554
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=201.32 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=162.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.................++.++.+|++|+++++++++
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 102 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG 102 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999998654332222223333335678999999999998887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 103 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 171 (269)
T 3gk3_A 103 KVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFG----------- 171 (269)
T ss_dssp CCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT-----------
T ss_pred CCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCC-----------
Confidence 78999999997532 233456778999999999999998652 14579999999867654432
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC--CCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA--FPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~--~~~ 225 (322)
...|+.||++.+.+++.++.++ |+++++++||.|.++....... ... .. .... +..
T Consensus 172 -----------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~---~~~----~~-~~~~~~~~~ 232 (269)
T 3gk3_A 172 -----------QANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQ---DVL----EA-KILPQIPVG 232 (269)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC--------------C-CSGGGCTTS
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhch---hHH----HH-HhhhcCCcC
Confidence 1569999999999999999875 8999999999999886543211 001 10 1111 556
Q ss_pred cceeHHHHHHHHHHhhcCCC--CCc-cEEEecC
Q 020747 226 IFVEIRDVVYAHIRALEVPK--ASG-RYLLAGS 255 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~--~~g-~~~~~~~ 255 (322)
.+.+++|+|+++++++.... .+| .++++|+
T Consensus 233 ~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG 265 (269)
T 3gk3_A 233 RLGRPDEVAALIAFLCSDDAGFVTGADLAINGG 265 (269)
T ss_dssp SCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred CccCHHHHHHHHHHHhCCCcCCeeCcEEEECCC
Confidence 77899999999999997643 456 4455543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-27 Score=200.33 Aligned_cols=222 Identities=15% Similarity=0.123 Sum_probs=159.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc-cCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-DGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... ....++ ...+.++..+.+|++|+++++++++
T Consensus 18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (267)
T 1vl8_A 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS-EAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 96 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999753321 111111 1113468889999999998887776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchh-hhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIG-AMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~-~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||.. +..+.+.
T Consensus 97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~-------- 168 (267)
T 1vl8_A 97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN-------- 168 (267)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS--------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCC--------
Confidence 68999999996432 223345678999999999999987542 2567999999984 3322111
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+++.++.+. |+++++++||.+.++...... ........+.... +.
T Consensus 169 --------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~----p~ 229 (267)
T 1vl8_A 169 --------------ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-SDPEKLDYMLKRI----PL 229 (267)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH-TCHHHHHHHHHTC----TT
T ss_pred --------------ChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccc-cChHHHHHHHhhC----CC
Confidence 1569999999999999998874 899999999999887532100 0011222222222 34
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
..+++++|+|+++++++... ...|.. .+.|
T Consensus 230 ~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 262 (267)
T 1vl8_A 230 GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDG 262 (267)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcCCeEEECC
Confidence 56789999999999998753 346754 4444
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=199.71 Aligned_cols=219 Identities=17% Similarity=0.165 Sum_probs=159.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ....++ .++.++++|++|+++++++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGR-ALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRFG 81 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh----cCCeEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998753221 111111 247889999999999887776
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ +.++||++||..+.++.+..
T Consensus 82 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~---------- 151 (270)
T 1yde_A 82 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQA---------- 151 (270)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTC----------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCCC----------
Confidence 68999999996432 1233467899999999999999987531 24799999998666654321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCC---CCccHHHHHHHHcCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPI---LNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.||.+.+.+.+.++.+ +|++++++|||.++++..... .......+....... +.
T Consensus 152 ------------~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----p~ 215 (270)
T 1yde_A 152 ------------VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ----PL 215 (270)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS----TT
T ss_pred ------------cccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcC----CC
Confidence 56999999999999999877 489999999999999752210 011111111111111 34
Q ss_pred CcceeHHHHHHHHHHhhcC-CCCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEV-PKASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~-~~~~g-~~~~~~~ 255 (322)
..+.+++|+|+++++++.. ...+| .+.+.|+
T Consensus 216 ~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG 248 (270)
T 1yde_A 216 GRMGQPAEVGAAAVFLASEANFCTGIELLVTGG 248 (270)
T ss_dssp SSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcccCCCcCCCEEEECCC
Confidence 5578999999999998864 34566 4455543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=200.13 Aligned_cols=221 Identities=15% Similarity=0.082 Sum_probs=162.3
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+.+.++.....++.++++|++|+++++++++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~--~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES--LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 81 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT--THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999864 122233222111236889999999998887766
Q ss_pred --CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 --GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 --~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||... ....+.+...+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 154 (275)
T 2pd4_A 82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAH------- 154 (275)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT-------
T ss_pred cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCC-------
Confidence 5799999999653 223345678999999999999999988631 258999999855543321
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++..... .........+.... +
T Consensus 155 ---------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~----p 214 (275)
T 2pd4_A 155 ---------------YNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-ADFRMILKWNEINA----P 214 (275)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS-TTHHHHHHHHHHHS----T
T ss_pred ---------------chhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc-cccHHHHHHHHhcC----C
Confidence 1569999999999999999875 89999999999999864321 11122222222222 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...+.+++|+|+++++++... ...|.+ .+.++
T Consensus 215 ~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg 249 (275)
T 2pd4_A 215 LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAG 249 (275)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 345678999999999999753 346654 45443
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=197.35 Aligned_cols=206 Identities=18% Similarity=0.198 Sum_probs=150.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++|+|+||||+|+||++++++|+++| ++|++++|+.... +.+.+. ...++.++.+|++|+++++++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~--~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH--HHHHhc--cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999 9999999976443 223222 24578999999999999888876
Q ss_pred ---CCCEEEEcccCcc-c-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---------C-----ccEEEEecchhhhc
Q 020747 79 ---GCDGVFHTASPVI-F-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---------S-----IKRVVLTSSIGAML 135 (322)
Q Consensus 79 ---~~d~vih~A~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~-----~~~~i~~SS~~~~~ 135 (322)
++|+|||+||... . ...+.+...+++|+.++.++++++.+.+ + .++||++||..++.
T Consensus 78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 157 (250)
T 1yo6_A 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence 7999999999754 2 1223456789999999999999987641 2 57999999986654
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~ 212 (322)
+... ++.+..+ ...|+.||++.+.+++.++.++ |+++++++||.+.++....
T Consensus 158 ~~~~---------~~~~~~~------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------- 212 (250)
T 1yo6_A 158 TDNT---------SGSAQFP------VLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK---------- 212 (250)
T ss_dssp TTCC---------STTSSSC------BHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-----------------
T ss_pred CCcc---------cccccCC------ccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC----------
Confidence 3321 0111111 2569999999999999999886 8999999999998875321
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCccEEEe
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASGRYLLA 253 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g~~~~~ 253 (322)
..+++++|+|+.++.++..+. ..|.|+..
T Consensus 213 ------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~ 243 (250)
T 1yo6_A 213 ------------NAALTVEQSTAELISSFNKLDNSHNGRFFMR 243 (250)
T ss_dssp ------------------HHHHHHHHHHHTTCCGGGTTCEEET
T ss_pred ------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEE
Confidence 123579999999999998754 46766543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=209.02 Aligned_cols=221 Identities=19% Similarity=0.304 Sum_probs=159.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-Chh---hhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTE---HLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~---~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+|+|+|||||||||++++++|+++|++|++++|+.+.. ... .+..+. ..+++.+.+|++|++++.++++++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 47899999999999999999999999999999986542 111 111221 246889999999999999999999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+|+... +.++.+++++|++. + +++||+ |+. +... +|..+..|. .
T Consensus 82 i~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~~----g~~~--------~~~~~~~p~-----~ 128 (308)
T 1qyc_A 82 ISTVGSLQ--------------IESQVNIIKAIKEV-GTVKRFFP-SEF----GNDV--------DNVHAVEPA-----K 128 (308)
T ss_dssp EECCCGGG--------------SGGGHHHHHHHHHH-CCCSEEEC-SCC----SSCT--------TSCCCCTTH-----H
T ss_pred EECCcchh--------------hhhHHHHHHHHHhc-CCCceEee-ccc----ccCc--------cccccCCcc-----h
Confidence 99998531 34578999999998 7 899984 443 2111 122222221 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAH 237 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~ 237 (322)
+.| .+|..+|++++ +.+++++++||+.++|+......... .....+. .+++ ..++|+|++|+|+++
T Consensus 129 ~~y-~sK~~~e~~~~----~~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~ 199 (308)
T 1qyc_A 129 SVF-EVKAKVRRAIE----AEGIPYTYVSSNCFAGYFLRSLAQAG----LTAPPRDKVVILGDGNARVVFVKEEDIGTFT 199 (308)
T ss_dssp HHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHHTTTTTCTT----CSSCCSSEEEEETTSCCEEEEECHHHHHHHH
T ss_pred hHH-HHHHHHHHHHH----hcCCCeEEEEeceecccccccccccc----ccCCCCCceEEecCCCceEEEecHHHHHHHH
Confidence 458 99999999886 35899999999999886432211100 0001111 1221 678999999999999
Q ss_pred HHhhcCCCCCc-cEEEe--cCCCCHHHHHHHHHHhCCC
Q 020747 238 IRALEVPKASG-RYLLA--GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 238 ~~~~~~~~~~g-~~~~~--~~~~~~~e~~~~i~~~~~~ 272 (322)
+.++.++...+ .|++. ++.+|+.|+++.+.+..|.
T Consensus 200 ~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~ 237 (308)
T 1qyc_A 200 IKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 237 (308)
T ss_dssp HTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred HHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCC
Confidence 99998765434 55543 4689999999999999874
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=198.27 Aligned_cols=199 Identities=12% Similarity=0.147 Sum_probs=152.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
+|+|+||||+|+||++++++|+++|+ +|++++|+..... ....++.....++.++.+|++|+++++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE-KISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH-HHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHH-HHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 48999999999999999999999999 9999998753221 1222222224578999999999998887776
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 154 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRH------ 154 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT------
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCC------
Confidence 68999999996532 223456788999999999999998653 15679999999855543221
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
.+.|+.||.+.+.+++.++.+ +|++++++|||.++++........
T Consensus 155 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---------------- 202 (244)
T 2bd0_A 155 ----------------SSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE---------------- 202 (244)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST----------------
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcccc----------------
Confidence 156999999999999888875 489999999999999875431110
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
....+++++|+|+++++++..+.
T Consensus 203 ~~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 203 MQALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp TGGGSBCHHHHHHHHHHHHTSCT
T ss_pred ccccCCCHHHHHHHHHHHHhCCc
Confidence 11357899999999999998753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-27 Score=208.59 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=150.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+++|+||||||+|+||++++++|+++|++|++++|+..... +...++. ....++.++.+|++|+++++++++
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSID-KALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999864332 1112221 112378999999999999888776
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---------CccEEEEecchhhhccCCCCC
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---------SIKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~i~~SS~~~~~~~~~~~ 141 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..++.+.+..
T Consensus 84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~- 162 (319)
T 3ioy_A 84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSP- 162 (319)
T ss_dssp HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSS-
T ss_pred hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCC-
Confidence 56999999996422 2344567899999999999999987652 24579999999776544321
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
..|+.||.+.+.+.+.++.++ |+++++++||.|.++........ ...+.......
T Consensus 163 ---------------------~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~ 220 (319)
T 3ioy_A 163 ---------------------GIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIR-PDALKGEVKPV 220 (319)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC----------------------
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccC-chhhcccccch
Confidence 569999998888888887664 89999999999998865432111 01111000000
Q ss_pred --CCCC---CC-CcceeHHHHHHHHHHhhcCCC
Q 020747 219 --QSFA---FP-YIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 219 --~~~~---~~-~~~i~~~D~a~~~~~~~~~~~ 245 (322)
.... .. ...++++|+|++++.+++.++
T Consensus 221 ~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 221 DKTAVERLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp --------CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 0011 11 122799999999999999853
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-27 Score=207.57 Aligned_cols=233 Identities=17% Similarity=0.115 Sum_probs=170.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC---------CcChhhhhhccCCCCcEEEEEccCCCccchHHh
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN---------SPKTEHLRELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.. ........++...+.++..+.+|++|+++++++
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 56799999999999999999999999999999988621 111122222333346788999999999998877
Q ss_pred hC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC---------ccEEEEecchhhhc
Q 020747 77 VD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS---------IKRVVLTSSIGAML 135 (322)
Q Consensus 77 ~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~---------~~~~i~~SS~~~~~ 135 (322)
++ ++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+. .++||++||..++.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 184 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence 76 78999999997532 33445678999999999999999865421 15999999987776
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~ 212 (322)
+.... ..|+.||++.+.+++.++.+ +|+++++++|| +.++......... ..
T Consensus 185 ~~~~~----------------------~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~---~~ 238 (322)
T 3qlj_A 185 GSVGQ----------------------GNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM---MA 238 (322)
T ss_dssp CBTTC----------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC------
T ss_pred CCCCC----------------------ccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh---hh
Confidence 54321 56999999999999999988 58999999999 7766543322111 00
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC------------------CCCHHHHHHHHHHhCC
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS------------------VAQHSDILKFLREHYP 271 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~------------------~~~~~e~~~~i~~~~~ 271 (322)
. .. ..+.+++++|+|+++++++... ..+| .+++.|+ ..+..|+++.+.+.++
T Consensus 239 ~---~~----~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ 311 (322)
T 3qlj_A 239 T---QD----QDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLG 311 (322)
T ss_dssp ------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHH
T ss_pred c---cc----cccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhh
Confidence 0 00 3345678999999999999653 2456 4455543 2367899999988875
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=196.75 Aligned_cols=224 Identities=17% Similarity=0.116 Sum_probs=164.8
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|+..+++|+++||||++.||+++++.|+++|++|++.+|+..... +..+++ +.+...+++|++|+++++++++
T Consensus 23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~-~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~ 98 (273)
T 4fgs_A 23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLD-AAIAEI---GGGAVGIQADSANLAELDRLYEKVK 98 (273)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHc---CCCeEEEEecCCCHHHHHHHHHHHH
Confidence 555577899999999999999999999999999999999764321 222333 3567889999999999887766
Q ss_pred ----CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 ----GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 ----~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||... +.+.+.|++.+++|+.|+.++++++.+.+ .-+++|++||..+..+.+..
T Consensus 99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~-------- 170 (273)
T 4fgs_A 99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAF-------- 170 (273)
T ss_dssp HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTC--------
T ss_pred HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCc--------
Confidence 5799999999632 23456788999999999999999998764 23589999998666544321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCcc----HHHHHHHHcCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFG----AEVILNLINGDQSF 221 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~----~~~~~~~~~g~~~~ 221 (322)
..|+.||.+...+.+.++.++ |++++.|.||.|..|......... ......+....
T Consensus 171 --------------~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (273)
T 4fgs_A 171 --------------SVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQV--- 233 (273)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHS---
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcC---
Confidence 569999999999999999885 899999999999988643322111 11222222222
Q ss_pred CCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
+...+..++|+|+++++++.. ...+|..+..++
T Consensus 234 -PlgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDG 268 (273)
T 4fgs_A 234 -PMGRVGRAEEVAAAALFLASDDSSFVTGAELFVDG 268 (273)
T ss_dssp -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred -CCCCCcCHHHHHHHHHHHhCchhcCccCCeEeECc
Confidence 455677899999999999965 346776654443
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=192.85 Aligned_cols=214 Identities=18% Similarity=0.164 Sum_probs=158.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ .+..+.+|++|+++++++++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLR-EAAEAV-----GAHPVVMDVADPASVERGFAEALAHLG 76 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHc-----CCEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999998753221 111111 26889999999998887766
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+++.+++|+.++.++++++.+. .+.++||++||.. .++.+.
T Consensus 77 ~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~----------- 144 (245)
T 1uls_A 77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLG----------- 144 (245)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTT-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCC-----------
Confidence 48999999996432 223456788999999999999988764 2467999999985 554322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++..... . ........... +...+
T Consensus 145 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~--~~~~~~~~~~~----p~~~~ 206 (245)
T 1uls_A 145 -----------QANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV-P--EKVREKAIAAT----PLGRA 206 (245)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS-C--HHHHHHHHHTC----TTCSC
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc-C--HHHHHHHHhhC----CCCCC
Confidence 1569999999999999998774 89999999999998864321 1 11222222222 33457
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
++++|+|+++++++..+ ...|.. .+.|+
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG 237 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDESSFITGQVLFVDGG 237 (245)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence 89999999999998753 345644 45443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=190.44 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=139.5
Q ss_pred CcEEEEECCcchhHHHHHHHHH-HCCCeEEEEEeCCC-CcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLL-QRGYTVKATVRDPN-SPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+|+|+||||+|+||++++++|+ ++|++|++++|++. .. .++.....++..+.+|++|+++++++++++|+|||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI-----PPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS-----CHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc-----hhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 4679999999999999999999 89999999999764 22 11111135789999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+||.. |+. ++++++++++. ++++||++||..+ +.... . ...+. ......+.|
T Consensus 80 ~ag~~--------------n~~-~~~~~~~~~~~-~~~~iv~iSs~~~-~~~~~----~-~~~~~------~~~~~~~~y 131 (221)
T 3r6d_A 80 GAMES--------------GSD-MASIVKALSRX-NIRRVIGVSMAGL-SGEFP----V-ALEKW------TFDNLPISY 131 (221)
T ss_dssp SCCCC--------------HHH-HHHHHHHHHHT-TCCEEEEEEETTT-TSCSC----H-HHHHH------HHHTSCHHH
T ss_pred cCCCC--------------Chh-HHHHHHHHHhc-CCCeEEEEeecee-cCCCC----c-ccccc------cccccccHH
Confidence 99852 455 99999999987 8899999999844 33211 1 10000 000001269
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhh--cC
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRAL--EV 243 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~--~~ 243 (322)
+.+|..+|.+++ ..+++++++|||.++++......... .... +....+++.+|+|+++++++ .+
T Consensus 132 ~~~K~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~~~~--------~~~~--~~~~~~~~~~dvA~~~~~l~~~~~ 197 (221)
T 3r6d_A 132 VQGERQARNVLR----ESNLNYTILRLTWLYNDPEXTDYELI--------PEGA--QFNDAQVSREAVVKAIFDILHAAD 197 (221)
T ss_dssp HHHHHHHHHHHH----HSCSEEEEEEECEEECCTTCCCCEEE--------CTTS--CCCCCEEEHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHH----hCCCCEEEEechhhcCCCCCcceeec--------cCCc--cCCCceeeHHHHHHHHHHHHHhcC
Confidence 999999999885 46999999999999997322211100 0000 02234899999999999999 76
Q ss_pred CC
Q 020747 244 PK 245 (322)
Q Consensus 244 ~~ 245 (322)
+.
T Consensus 198 ~~ 199 (221)
T 3r6d_A 198 ET 199 (221)
T ss_dssp CG
T ss_pred hh
Confidence 54
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=196.72 Aligned_cols=208 Identities=18% Similarity=0.198 Sum_probs=154.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+.... ..+..+++|++|+++++++++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 86 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP------------EGFLAVKCDITDTEQVEQAYKEIEETHG 86 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------------TTSEEEECCTTSHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh------------ccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999976432 126789999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+|||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----------- 155 (253)
T 2nm0_A 87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAG----------- 155 (253)
T ss_dssp SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHH-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCC-----------
Confidence 47999999996432 3456678899999999999999876532 5579999999855432211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+.++....... .......... +...+
T Consensus 156 -----------~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~~----p~~~~ 217 (253)
T 2nm0_A 156 -----------QANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTD---EQRANIVSQV----PLGRY 217 (253)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC------------CHHHHHTTC----TTCSC
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCH---HHHHHHHhcC----CCCCC
Confidence 1569999999999999998874 8999999999998875332111 1111222222 34568
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
++++|+|+++++++..+ ...|.+ .+.|
T Consensus 218 ~~p~dvA~~i~~l~s~~~~~~tG~~i~vdG 247 (253)
T 2nm0_A 218 ARPEEIAATVRFLASDDASYITGAVIPVDG 247 (253)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence 89999999999999764 346654 4444
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=198.73 Aligned_cols=219 Identities=19% Similarity=0.140 Sum_probs=152.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+.+|++|+++++++++
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAE-RVAGEI---GDAALAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999764321 111222 3568999999999998887776
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-------ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-------IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-------~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+.+. ..+||++||..+..+.+.
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 156 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPN------ 156 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTT------
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCC------
Confidence 68999999997531 13345667899999999999998866421 346999999865543332
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQSF 221 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~~ 221 (322)
...|+.||++.+.+++.++.+ +|+++++++||.+.++......... ......+....
T Consensus 157 ----------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~--- 217 (261)
T 3n74_A 157 ----------------LAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSI--- 217 (261)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------C---
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcC---
Confidence 156999999999999999988 4899999999999998654321111 11111111111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
+...+++++|+|+++++++... ..+|.. ++.+
T Consensus 218 -~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 252 (261)
T 3n74_A 218 -PMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDG 252 (261)
T ss_dssp -TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred -CcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecC
Confidence 5567899999999999999643 356744 5554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-27 Score=199.81 Aligned_cols=202 Identities=17% Similarity=0.109 Sum_probs=149.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.....++.++.+|++|+++++++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLR-AVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 55789999999999999999999999999999999764322 2222222234678999999999999887765
Q ss_pred CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|+|||+||... ....+.+...+++|+.|+.++++++.+. .+.++||++||..++.+...
T Consensus 106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 175 (262)
T 3rkr_A 106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVAD---------- 175 (262)
T ss_dssp CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTT----------
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCC----------
Confidence 5899999999621 1234456789999999999999997652 25679999999865543322
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.||++.+.+++.++.+ .|+++++++||.|.++...... ... ....
T Consensus 176 ------------~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~~----~~~~ 228 (262)
T 3rkr_A 176 ------------GAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS-----------AKK----SALG 228 (262)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc-----------ccc----cccc
Confidence 156999999999999999987 4899999999999887532210 001 3345
Q ss_pred ceeHHHHHHHHHHhhcCCC
Q 020747 227 FVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~~ 245 (322)
+++++|+|+++++++....
T Consensus 229 ~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 229 AIEPDDIADVVALLATQAD 247 (262)
T ss_dssp CCCHHHHHHHHHHHHTCCT
T ss_pred CCCHHHHHHHHHHHhcCcc
Confidence 6789999999999998753
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-27 Score=205.89 Aligned_cols=221 Identities=14% Similarity=0.209 Sum_probs=157.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-Ch----hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KT----EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+|+|+|||||||||++++++|+++|++|++++|+.+.. .. +.+..+. ..+++++++|++|++++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQ--SLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHH--hCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 36899999999999999999999999999999986211 10 1111111 23578999999999999999999999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
|||+|+... +.++.+++++|++. + +++||+ |+. +... +|..+..|.
T Consensus 80 vi~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~~----g~~~--------~~~~~~~p~----- 126 (307)
T 2gas_A 80 VICAAGRLL--------------IEDQVKIIKAIKEA-GNVKKFFP-SEF----GLDV--------DRHDAVEPV----- 126 (307)
T ss_dssp EEECSSSSC--------------GGGHHHHHHHHHHH-CCCSEEEC-SCC----SSCT--------TSCCCCTTH-----
T ss_pred EEECCcccc--------------cccHHHHHHHHHhc-CCceEEee-ccc----ccCc--------ccccCCCcc-----
Confidence 999998532 45678999999998 7 899983 432 2211 122222221
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYA 236 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~ 236 (322)
.+.| .+|..+|++++ +.+++++++||+.++++......... .....+. .+++ ..++++|++|+|++
T Consensus 127 ~~~y-~sK~~~e~~~~----~~~i~~~~lrp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~ 197 (307)
T 2gas_A 127 RQVF-EEKASIRRVIE----AEGVPYTYLCCHAFTGYFLRNLAQLD----ATDPPRDKVVILGDGNVKGAYVTEADVGTF 197 (307)
T ss_dssp HHHH-HHHHHHHHHHH----HHTCCBEEEECCEETTTTGGGTTCTT----CSSCCSSEEEEETTSCSEEEEECHHHHHHH
T ss_pred hhHH-HHHHHHHHHHH----HcCCCeEEEEcceeeccccccccccc----cccCCCCeEEEecCCCcceEEeeHHHHHHH
Confidence 1469 99999999885 45899999999999886532211100 0001111 1122 56899999999999
Q ss_pred HHHhhcCCCCCc-cEEEe--cCCCCHHHHHHHHHHhCCC
Q 020747 237 HIRALEVPKASG-RYLLA--GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 237 ~~~~~~~~~~~g-~~~~~--~~~~~~~e~~~~i~~~~~~ 272 (322)
++.++.++...| .+++. ++.+|++|+++.+.+..|.
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 236 (307)
T 2gas_A 198 TIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGK 236 (307)
T ss_dssp HHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCC
Confidence 999998765434 45443 4689999999999998874
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=205.40 Aligned_cols=215 Identities=17% Similarity=0.146 Sum_probs=154.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +...++.....++.++++|++|+++++++++
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALE-QAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999764322 2222232234578999999999999887776
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.|+.++++++.+.+ + .++||++||..++.+.+.
T Consensus 108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------- 177 (301)
T 3tjr_A 108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAG---------- 177 (301)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTT----------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCC----------
Confidence 78999999996432 3344567899999999999999976531 2 468999999866654332
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC--
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-- 222 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-- 222 (322)
.+.|+.||.+.+.+.+.++.++ |+++++++||.|.++.......... ........ ..+.
T Consensus 178 ------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 243 (301)
T 3tjr_A 178 ------------LGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRG--ADYGMSATPEGAFGPL 243 (301)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC-------------------
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccccccc--hhhccccChhhhcccc
Confidence 1569999999999999999875 8999999999998875221000000 00000000 0111
Q ss_pred -CCCcceeHHHHHHHHHHhhcCCC
Q 020747 223 -FPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 223 -~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
....+++++|+|++++.+++.++
T Consensus 244 ~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 244 PTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp -----CCCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCC
Confidence 44568999999999999998753
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=200.08 Aligned_cols=228 Identities=19% Similarity=0.175 Sum_probs=163.0
Q ss_pred CCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc--------Chh----hhhhccCCCCcEEEEEccCCCcc
Q 020747 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP--------KTE----HLRELDGATERLHLFKANLLEEG 71 (322)
Q Consensus 4 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~----~~~~~~~~~~~~~~~~~Dl~~~~ 71 (322)
..+++|+++||||+|+||++++++|+++|++|++++|+.... ..+ ....+.....++..+.+|++|++
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 346789999999999999999999999999999999853211 111 11222223467899999999999
Q ss_pred chHHhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhc
Q 020747 72 SFDSAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAML 135 (322)
Q Consensus 72 ~~~~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~ 135 (322)
+++++++ ++|++||+||.... ...+.+++.+++|+.|+.++++++.+.+ + .++||++||..++.
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 9887765 58999999997532 2344567889999999999999976532 2 46899999986655
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~ 212 (322)
+.+. ...|+.||++.+.+.+.++.++ |+++++++||.|.++...... ......
T Consensus 167 ~~~~----------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~ 222 (277)
T 3tsc_A 167 MQPF----------------------MIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDM--VTAVGQ 222 (277)
T ss_dssp CCSS----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHH--HHHHHH
T ss_pred CCCC----------------------chhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchh--hhhhhh
Confidence 4332 1569999999999999999885 899999999999998643210 001111
Q ss_pred HHHcCC---CCC-C-CCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 213 NLINGD---QSF-A-FPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 213 ~~~~g~---~~~-~-~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...... ..+ . ....+.+++|+|+++++++... ..+|.. .+.|+
T Consensus 223 ~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 273 (277)
T 3tsc_A 223 AMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG 273 (277)
T ss_dssp HHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence 111111 111 1 2235899999999999999753 356744 55544
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=194.38 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=154.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+...... +..+.+|++|+++++++++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~------------~~~~~~D~~~~~~~~~~~~~~~~~~g 80 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG------------LFGVEVDVTDSDAVDRAFTAVEEHQG 80 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------------SEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH------------hcCeeccCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999999997644311 1248899999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..++++.+.
T Consensus 81 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 149 (247)
T 1uzm_A 81 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGN----------- 149 (247)
T ss_dssp SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----C-----------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCC-----------
Confidence 57999999996432 233456789999999999999988653 25689999999866554322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.+.++..... ............ +...+
T Consensus 150 -----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~~~~ 211 (247)
T 1uzm_A 150 -----------QANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL---DERIQQGALQFI----PAKRV 211 (247)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS---CHHHHHHHGGGC----TTCSC
T ss_pred -----------ChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhc---CHHHHHHHHhcC----CCCCC
Confidence 156999999999999999887 489999999999988753211 111112222211 34568
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
++++|+|+++++++... ...|.+ .+.++
T Consensus 212 ~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG 242 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASEDASYISGAVIPVDGG 242 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHcCccccCCcCCEEEECCC
Confidence 89999999999998753 345644 55543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=192.67 Aligned_cols=202 Identities=15% Similarity=0.228 Sum_probs=136.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
.|++|+||||||+|+||++++++|+++| ++|++++|+++.... +. ..+++.+++|++|+++++++++++|+|
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-----~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~v 92 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-----PY--PTNSQIIMGDVLNHAALKQAMQGQDIV 92 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-----SC--CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-----cc--cCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence 3556899999999999999999999999 899999998644321 11 246899999999999999999999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
||+|+.. . ....+.++++++++. ++++||++||.. +|+.... ...+..|..+..+. .
T Consensus 93 v~~a~~~------~-------~~~~~~~~~~~~~~~-~~~~iV~iSS~~-~~~~~~~--~~~~~~~~~~~~~~------~ 149 (236)
T 3qvo_A 93 YANLTGE------D-------LDIQANSVIAAMKAC-DVKRLIFVLSLG-IYDEVPG--KFVEWNNAVIGEPL------K 149 (236)
T ss_dssp EEECCST------T-------HHHHHHHHHHHHHHT-TCCEEEEECCCC-C------------------CGGG------H
T ss_pred EEcCCCC------c-------hhHHHHHHHHHHHHc-CCCEEEEEecce-ecCCCCc--ccccchhhcccchH------H
Confidence 9999741 1 113567899999987 889999999984 4433220 01122333222221 3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
.|..+ |+.+ +..|++++++|||.++++..... .. ...+.+ ....+++++|+|+++++++.+
T Consensus 150 ~~~~~----~~~l----~~~gi~~~~vrPg~i~~~~~~~~-~~-------~~~~~~---~~~~~i~~~DvA~~i~~ll~~ 210 (236)
T 3qvo_A 150 PFRRA----ADAI----EASGLEYTILRPAWLTDEDIIDY-EL-------TSRNEP---FKGTIVSRKSVAALITDIIDK 210 (236)
T ss_dssp HHHHH----HHHH----HTSCSEEEEEEECEEECCSCCCC-EE-------ECTTSC---CSCSEEEHHHHHHHHHHHHHS
T ss_pred HHHHH----HHHH----HHCCCCEEEEeCCcccCCCCcce-EE-------eccCCC---CCCcEECHHHHHHHHHHHHcC
Confidence 45544 4433 36699999999999999753321 00 001110 234689999999999999988
Q ss_pred CC--CCccEEEecC
Q 020747 244 PK--ASGRYLLAGS 255 (322)
Q Consensus 244 ~~--~~g~~~~~~~ 255 (322)
+. .+..|++++.
T Consensus 211 ~~~~~g~~~~i~~~ 224 (236)
T 3qvo_A 211 PEKHIGENIGINQP 224 (236)
T ss_dssp TTTTTTEEEEEECS
T ss_pred cccccCeeEEecCC
Confidence 65 3346766643
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=200.43 Aligned_cols=223 Identities=18% Similarity=0.093 Sum_probs=163.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 79 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++...+.++..+++|++|+++++++++ +
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTA-AVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTH-HHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 56799999999999999999999999999999999875543 2223332235678999999999999887776 6
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|++||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..++.+...
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~------------ 177 (275)
T 4imr_A 110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSV------------ 177 (275)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCC------------
Confidence 8999999996422 234456788999999999999998543 14579999999865542221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++..................... +...+.
T Consensus 178 ----------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---p~~r~~ 244 (275)
T 4imr_A 178 ----------VTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLN---WMGRAG 244 (275)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHS---TTCSCB
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcC---ccCCCc
Confidence 1569999999999999999885 899999999999887432110001111112111100 234567
Q ss_pred eHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 229 EIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
.++|+|+++++++... ..+|.. ++.|
T Consensus 245 ~pedvA~~v~fL~s~~a~~itG~~i~vdG 273 (275)
T 4imr_A 245 RPEEMVGAALFLASEACSFMTGETIFLTG 273 (275)
T ss_dssp CGGGGHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred CHHHHHHHHHHHcCcccCCCCCCEEEeCC
Confidence 8999999999999753 356744 4544
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=192.04 Aligned_cols=213 Identities=20% Similarity=0.192 Sum_probs=155.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|+++||||+|+||++++++|+++|++|++++|+... ...++ .+..+.+|++| ++++++++ ++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g~i 71 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE----AAQSL-----GAVPLPTDLEK-DDPKGLVKRALEALGGL 71 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHH-----TCEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHhh-----CcEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999997643 11222 16788999999 88776654 78
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|++||+||.... ...+.+++.+++|+.++.++++++.+. .+.++||++||..++.+...
T Consensus 72 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 138 (239)
T 2ekp_A 72 HVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGP------------- 138 (239)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCC-------------
Confidence 999999996432 223456789999999999999998543 15689999999855543210
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
.+ ...|+.||.+.+.+.+.++.+. |++++++|||.+.++..... .........+.... +...+.+
T Consensus 139 -~~------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~----p~~~~~~ 206 (239)
T 2ekp_A 139 -VP------IPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPL-RQNPELYEPITARI----PMGRWAR 206 (239)
T ss_dssp -SC------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH-HTCHHHHHHHHTTC----TTSSCBC
T ss_pred -CC------CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcc-ccCHHHHHHHHhcC----CCCCCcC
Confidence 01 1569999999999999999875 99999999999999863211 00112222232222 3456789
Q ss_pred HHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 230 IRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
++|+|+++++++... ...|.+ .+.|+
T Consensus 207 ~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 207 PEEIARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp HHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHcCchhcCCCCCEEEECCC
Confidence 999999999998753 345654 44443
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=201.30 Aligned_cols=226 Identities=21% Similarity=0.174 Sum_probs=162.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-------hhhh----hhccCCCCcEEEEEccCCCccchH
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-------TEHL----RELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... .+.+ ..+...+.++..+++|++|+++++
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 56789999999999999999999999999999988643211 1111 112223467899999999999988
Q ss_pred HhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCC
Q 020747 75 SAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNE 138 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~ 138 (322)
++++ ++|++||+||.... ...+.+...+++|+.|+.++++++.+.+ + .++||++||..++.+.+
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~ 203 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAP 203 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCCT
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCCC
Confidence 8776 68999999997532 2334567889999999999999986542 2 46899999986665433
Q ss_pred CCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC----------CC
Q 020747 139 TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI----------LN 205 (322)
Q Consensus 139 ~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~----------~~ 205 (322)
. ...|+.||.+.+.+.+.++.++ |+++++++||.|.++..... ..
T Consensus 204 ~----------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 261 (317)
T 3oec_A 204 G----------------------QSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLEN 261 (317)
T ss_dssp T----------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSS
T ss_pred C----------------------CcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccc
Confidence 2 1569999999999999999885 89999999999998753210 00
Q ss_pred ccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCcc-EEEecC
Q 020747 206 FGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGR-YLLAGS 255 (322)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~-~~~~~~ 255 (322)
............... ....+++++|+|+++++++... ..+|. +++.|+
T Consensus 262 ~~~~~~~~~~~~~~~--~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG 312 (317)
T 3oec_A 262 PTREDAAELFSQLTL--LPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGG 312 (317)
T ss_dssp CCHHHHHHHHTTTCS--SSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cchhHHHHHHhhhcc--CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcc
Confidence 001111111111111 2267899999999999998653 35674 455543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-27 Score=209.48 Aligned_cols=218 Identities=11% Similarity=0.154 Sum_probs=157.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC-CCcCh---hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKT---EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~---~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+|+|+||||||+||++++++|+++|++|++++|+. +.... +.+..+. ..+++++.+|++|++++.++++++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~--~~~v~~v~~D~~d~~~l~~a~~~~d~v 81 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFR--SMGVTIIEGEMEEHEKMVSVLKQVDIV 81 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHH--HTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhh--cCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence 46899999999999999999999999999999986 32111 1121111 245889999999999999999999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
||+|+... +.++.+++++|++. + +++||+ |+. +.. .+|..+..|. .
T Consensus 82 i~~a~~~~--------------~~~~~~l~~aa~~~-g~v~~~v~-S~~----g~~--------~~~~~~~~p~-----~ 128 (321)
T 3c1o_A 82 ISALPFPM--------------ISSQIHIINAIKAA-GNIKRFLP-SDF----GCE--------EDRIKPLPPF-----E 128 (321)
T ss_dssp EECCCGGG--------------SGGGHHHHHHHHHH-CCCCEEEC-SCC----SSC--------GGGCCCCHHH-----H
T ss_pred EECCCccc--------------hhhHHHHHHHHHHh-CCccEEec-ccc----ccC--------ccccccCCCc-----c
Confidence 99998532 45678999999998 7 899983 332 221 1222222221 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHH---HHHcCC--CCCC---CCCcceeHHHHH
Q 020747 163 EWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVIL---NLINGD--QSFA---FPYIFVEIRDVV 234 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~---~~~~g~--~~~~---~~~~~i~~~D~a 234 (322)
+.| .+|..+|++++ +.+++++++||+.++++... .+.. ....+. ..++ ..++++|++|+|
T Consensus 129 ~~y-~sK~~~e~~~~----~~~~~~~~lrp~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva 196 (321)
T 3c1o_A 129 SVL-EKKRIIRRAIE----AAALPYTYVSANCFGAYFVN-------YLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIA 196 (321)
T ss_dssp HHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHHHH-------HHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHH
T ss_pred hHH-HHHHHHHHHHH----HcCCCeEEEEeceecccccc-------ccccccccccccCceEEecCCCcceeEeeHHHHH
Confidence 569 99999999886 45899999999998875311 1111 001121 2222 678999999999
Q ss_pred HHHHHhhcCCCCCc-cEEEe--cCCCCHHHHHHHHHHhCCC
Q 020747 235 YAHIRALEVPKASG-RYLLA--GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 235 ~~~~~~~~~~~~~g-~~~~~--~~~~~~~e~~~~i~~~~~~ 272 (322)
++++.++.++...| .|++. ++.+|++|+++.+.+.+|.
T Consensus 197 ~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~ 237 (321)
T 3c1o_A 197 KYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGL 237 (321)
T ss_dssp HHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCC
Confidence 99999998765444 55554 4789999999999998863
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=199.85 Aligned_cols=221 Identities=15% Similarity=0.073 Sum_probs=161.1
Q ss_pred CCCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
..++|+|+||||+ |+||++++++|+++|++|++++|+.... +.+.++.....++.++++|++|+++++++++
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK--DRITEFAAEFGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhH--HHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3567999999999 9999999999999999999999974322 2333332223457899999999999888776
Q ss_pred ---CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCC
Q 020747 79 ---GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ---~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||.... ...+.+...+++|+.++.++++++.+.+. .++||++||..+..+.+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 163 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPN----- 163 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT-----
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCC-----
Confidence 57999999997532 23345677899999999999999987532 358999999866554332
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
.+.|+.||++.+.+++.++.++ |+++++++||.|.++..... .........+....
T Consensus 164 -----------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~--- 222 (271)
T 3ek2_A 164 -----------------YNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-KSFGKILDFVESNS--- 222 (271)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-HHHHHHHHHHHHHS---
T ss_pred -----------------ccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-cchHHHHHHHHhcC---
Confidence 1569999999999999999875 89999999999999764432 11122223333322
Q ss_pred CCCCcceeHHHHHHHHHHhhcC--CCCCcc-EEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEV--PKASGR-YLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~--~~~~g~-~~~~~ 254 (322)
+...+.+++|+|+++++++.. ...+|. +++.+
T Consensus 223 -~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdg 257 (271)
T 3ek2_A 223 -PLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDS 257 (271)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEEST
T ss_pred -CcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECC
Confidence 456678999999999999975 345674 45554
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=194.98 Aligned_cols=224 Identities=17% Similarity=0.104 Sum_probs=165.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG----- 79 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 79 (322)
++++|+++||||+|+||++++++|+++|++|++++++......+...++.....++..+.+|++|.++++++++.
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999988765543332233333333356788999999999888776652
Q ss_pred --------CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCc
Q 020747 80 --------CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 80 --------~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
+|++||+||.... ...+.+++.+++|+.++.++++++.+.+ +.++||++||..+..+.+.
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 157 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPD------ 157 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTT------
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCC------
Confidence 8999999996432 2333456789999999999999998753 2358999999866554332
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
...|+.||++.+.+.+.++.++ |+++++++||.+.++........ ...........
T Consensus 158 ----------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~---- 216 (255)
T 3icc_A 158 ----------------FIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSD-PMMKQYATTIS---- 216 (255)
T ss_dssp ----------------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTS-HHHHHHHHHTS----
T ss_pred ----------------cchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhccc-HHHHHhhhccC----
Confidence 1569999999999999999874 89999999999999875543221 21122222222
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
+...+.+++|+|+++++++... ...|.+ .++|+
T Consensus 217 ~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG 252 (255)
T 3icc_A 217 AFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 252 (255)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCC
Confidence 4567789999999999998643 356644 55543
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=197.26 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=158.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHH-CCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQ-RGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~ 80 (322)
++|+++||||+|+||++++++|++ .|++|++.+|+.... ..++..+++|++|+++++++++ ++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~i 71 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-----------AENLKFIKADLTKQQDITNVLDIIKNVSF 71 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-----------CTTEEEEECCTTCHHHHHHHHHHTTTCCE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-----------cccceEEecCcCCHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999 789999988876422 2357899999999999988876 67
Q ss_pred CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCC
Q 020747 81 DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN 154 (322)
Q Consensus 81 d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~ 154 (322)
|++||+||.... ...+.+++.+++|+.|+.++++++.+.+. .++||++||..++.+.+.
T Consensus 72 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------------- 136 (244)
T 4e4y_A 72 DGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPN--------------- 136 (244)
T ss_dssp EEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTT---------------
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCC---------------
Confidence 999999997432 23345678899999999999999987632 248999999866544332
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCc--------cHHHHHHHHcCCCCCCC
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNF--------GAEVILNLINGDQSFAF 223 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||++.+.+.+.++.+ +|+++++++||.|.++........ ............ +
T Consensus 137 -------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p 205 (244)
T 4e4y_A 137 -------SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEF----P 205 (244)
T ss_dssp -------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTS----T
T ss_pred -------CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcC----C
Confidence 156999999999999999985 489999999999998753211000 000112222222 5
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
...+.+++|+|+++++++... ..+|.. ++.|
T Consensus 206 ~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 239 (244)
T 4e4y_A 206 LNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDG 239 (244)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhcCccccccCCeEeECC
Confidence 567889999999999999753 345644 5544
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=202.01 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=158.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|....... +...++...+.++.++++|++|+++++++++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 88 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE 88 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999886433211 2223333335679999999999999888776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.+...+++|+.++.++++++.+.+ +.++||++||..+..+.+..
T Consensus 89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~---------- 158 (262)
T 3ksu_A 89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFY---------- 158 (262)
T ss_dssp HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCCC----------
Confidence 68999999996432 2344567889999999999999998853 34689999998666544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||++.+.+.+.++.++ |+++++++||.|.++........ .......... +...+
T Consensus 159 ------------~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~~~----~~~r~ 220 (262)
T 3ksu_A 159 ------------STYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETK--ESTAFHKSQA----MGNQL 220 (262)
T ss_dssp ------------CC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------------CCCCS
T ss_pred ------------chhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCch--HHHHHHHhcC----cccCC
Confidence 349999999999999999886 89999999999988643221110 0011111111 45567
Q ss_pred eeHHHHHHHHHHhhcC-CCCCccE-EEecCCC
Q 020747 228 VEIRDVVYAHIRALEV-PKASGRY-LLAGSVA 257 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~-~~~~g~~-~~~~~~~ 257 (322)
.+++|+|+++++++.. ...+|.. .+.|+..
T Consensus 221 ~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~ 252 (262)
T 3ksu_A 221 TKIEDIAPIIKFLTTDGWWINGQTIFANGGYT 252 (262)
T ss_dssp CCGGGTHHHHHHHHTTTTTCCSCEEEESTTCC
T ss_pred CCHHHHHHHHHHHcCCCCCccCCEEEECCCcc
Confidence 8999999999999875 2356754 5655543
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=200.67 Aligned_cols=220 Identities=16% Similarity=0.096 Sum_probs=156.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+...... ....+.....++.++.+|++|+++++++++
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEK-AEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFG 110 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHH-HHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999999998654321 111111113468899999999998887776
Q ss_pred CCCEEEEcccCccc-C------CCCCcchhhhHHHHHHH----HHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 GCDGVFHTASPVIF-L------SDNPQADIVDPAVMGTL----NVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ~~d~vih~A~~~~~-~------~~~~~~~~~~~N~~~~~----~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
.+|+|||+||.... . ..+.+.+.+++|+.++. ++++.+++. +.++||++||..+..+...
T Consensus 111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~~~~~-------- 181 (279)
T 3ctm_A 111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSISGKIVNIP-------- 181 (279)
T ss_dssp CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCCTTSCC-----------
T ss_pred CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEECchHhccCCCC--------
Confidence 38999999996532 1 11234578999999955 555555555 6789999999854433100
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
.+ ...|+.||++.+.+++.++.++ + ++++++||.+.++..... .......+.... +.
T Consensus 182 ------~~------~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~----p~ 241 (279)
T 3ctm_A 182 ------QL------QAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA---SKDMKAKWWQLT----PL 241 (279)
T ss_dssp ------CC------HHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC---CHHHHHHHHHHS----TT
T ss_pred ------CC------cccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc---ChHHHHHHHHhC----Cc
Confidence 01 1569999999999999999884 6 999999999998865321 112222222211 34
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
..+++++|+|+++++++... ...| .+++.++
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG 275 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNASTFTTGSDVVIDGG 275 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 56889999999999999753 3456 4455544
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=197.13 Aligned_cols=216 Identities=18% Similarity=0.151 Sum_probs=160.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+++|++|+++++++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA-EAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999999999753221 111222 2468899999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|+|||+||.... ...+.++..+++|+.++.++++++.+.+ ..++||++||..++ +.+.
T Consensus 80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~~~------------- 145 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GAFG------------- 145 (263)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CHHH-------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CCCC-------------
Confidence 57999999996432 1233456789999999999999998763 13699999998544 2211
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.|.++..... .......+.... +...+.+
T Consensus 146 ---------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~----p~~~~~~ 209 (263)
T 2a4k_A 146 ---------LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL---PPWAWEQEVGAS----PLGRAGR 209 (263)
T ss_dssp ---------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS---CHHHHHHHHHTS----TTCSCBC
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc---CHHHHHHHHhcC----CCCCCcC
Confidence 1569999999999999998774 89999999999999864432 122222233322 3456789
Q ss_pred HHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 230 IRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
++|+|+++++++... ...|.+ .+.++
T Consensus 210 p~dvA~~v~~l~s~~~~~~tG~~i~vdgG 238 (263)
T 2a4k_A 210 PEEVAQAALFLLSEESAYITGQALYVDGG 238 (263)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 999999999998753 355754 45543
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=200.55 Aligned_cols=208 Identities=17% Similarity=0.127 Sum_probs=148.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++++|++|+++++++++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 101 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQ-ETAAEI---GDDALCVPTDVTDPDSVRALFTATVEKFG 101 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---TSCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh---CCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999999999999754321 122222 2568899999999999888776
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--ccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--IKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+ + .++||++||..++.+.+.
T Consensus 102 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~-------- 173 (272)
T 4dyv_A 102 RVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPY-------- 173 (272)
T ss_dssp CCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTT--------
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCC--------
Confidence 78999999997422 2344567899999999999999886642 2 369999999866654332
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.|.++........ ........ ..
T Consensus 174 --------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~----~~~~~~~~----~~ 231 (272)
T 4dyv_A 174 --------------SAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAG----VPQADLSI----KV 231 (272)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----------------------------
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhccc----chhhhhcc----cc
Confidence 1569999999999999999874 89999999999998764321110 00000001 34
Q ss_pred CcceeHHHHHHHHHHhhcCCCCC
Q 020747 225 YIFVEIRDVVYAHIRALEVPKAS 247 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~~ 247 (322)
..+.+++|+|+++++++..+...
T Consensus 232 ~~~~~pedvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMASLPLDA 254 (272)
T ss_dssp ----CHHHHHHHHHHHHHSCTTS
T ss_pred cCCCCHHHHHHHHHHHhCCCCcC
Confidence 55789999999999999976543
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=197.13 Aligned_cols=198 Identities=16% Similarity=0.093 Sum_probs=152.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
.|+|+|+||||+|+||++++++|+++|++|++++|+..+... ..+.+|++|+++++++++
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-------------~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-------------HSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-------------EEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-------------cceEEEeCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999999999999998754321 457889999998887765
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.+. .++||++||..++.+.+.
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~------------ 154 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSG------------ 154 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT------------
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCC------------
Confidence 46999999996422 22334667899999999999999987532 248999999866654332
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.||++.+.+++.++.+ .|+++++++||.|.++.. ....... +...
T Consensus 155 ----------~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~-----------~~~~~~~----~~~~ 209 (251)
T 3orf_A 155 ----------MIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTN-----------RKYMSDA----NFDD 209 (251)
T ss_dssp ----------BHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHH-----------HHHCTTS----CGGG
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcch-----------hhhcccc----cccc
Confidence 156999999999999999988 489999999999977531 2222222 4566
Q ss_pred ceeHHHHHHHHHHhhcC---CCCCc-cEEEe
Q 020747 227 FVEIRDVVYAHIRALEV---PKASG-RYLLA 253 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~---~~~~g-~~~~~ 253 (322)
+++++|+|+++++++.. ....| .+.+.
T Consensus 210 ~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~ 240 (251)
T 3orf_A 210 WTPLSEVAEKLFEWSTNSDSRPTNGSLVKFE 240 (251)
T ss_dssp SBCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred cCCHHHHHHHHHHHhcCccccCCcceEEEEe
Confidence 78999999999999987 44566 44443
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=200.78 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=158.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++++|++|+++++++++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQ-QLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 466799999999999999999999999999999988753221 111222 3468899999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+ ++||++||..++.+.+.
T Consensus 79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~---------- 147 (253)
T 1hxh_A 79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQ---------- 147 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCTT----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCCC----------
Confidence 47999999996532 223456788999999999888776543 25 79999999865543221
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFAF 223 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~~ 223 (322)
...|+.||.+.+.+.+.++.+. |++++++|||.++++........ .......... ... +
T Consensus 148 ------------~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~-p 212 (253)
T 1hxh_A 148 ------------YAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK--GVSKEMVLHDPKLN-R 212 (253)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT--TCCHHHHBCBTTTB-T
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccch--hhhHHHHhhhhccC-c
Confidence 1569999999999999998773 89999999999999853210000 0011101110 001 3
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
...+.+++|+|+++++++..+ ...|.+ .+.++
T Consensus 213 ~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 456889999999999999764 345644 55544
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-26 Score=197.75 Aligned_cols=217 Identities=17% Similarity=0.147 Sum_probs=157.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC-CCcChhhhhhcc-CCCCcEEEEEccCCC----ccchHHhhC-
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELD-GATERLHLFKANLLE----EGSFDSAVD- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~~~Dl~~----~~~~~~~~~- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+. ... .+...++. ....++.++++|++| +++++++++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~-~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~ 99 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAA-VSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS 99 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHH-HHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999976 322 11222221 123568999999999 887777665
Q ss_pred ------CCCEEEEcccCcccC---------------CCCCcchhhhHHHHHHHHHHHHHhhcC---C------ccEEEEe
Q 020747 79 ------GCDGVFHTASPVIFL---------------SDNPQADIVDPAVMGTLNVLRSCAKVH---S------IKRVVLT 128 (322)
Q Consensus 79 ------~~d~vih~A~~~~~~---------------~~~~~~~~~~~N~~~~~~l~~~~~~~~---~------~~~~i~~ 128 (322)
++|+|||+||..... ..+.+...+++|+.++.++++++.+.+ + .++||++
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i 179 (288)
T 2x9g_A 100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL 179 (288)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence 689999999964321 112345789999999999999987653 2 4589999
Q ss_pred cchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC
Q 020747 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN 205 (322)
Q Consensus 129 SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~ 205 (322)
||..++.+.+. ...|+.||++.+.+.+.++.++ |+++++++||.|+++. . ..
T Consensus 180 sS~~~~~~~~~----------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~- 234 (288)
T 2x9g_A 180 CDAMVDQPCMA----------------------FSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG- 234 (288)
T ss_dssp CCTTTTSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC-
T ss_pred ecccccCCCCC----------------------CchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC-
Confidence 99855543221 1569999999999999999875 8999999999999987 3 11
Q ss_pred ccHHHHHHHHcCCCCCCCCCcc-eeHHHHHHHHHHhhcCC--CCCccEE-Eec
Q 020747 206 FGAEVILNLINGDQSFAFPYIF-VEIRDVVYAHIRALEVP--KASGRYL-LAG 254 (322)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~~-i~~~D~a~~~~~~~~~~--~~~g~~~-~~~ 254 (322)
......+.... +...+ .+++|+|+++++++... ..+|.++ +.|
T Consensus 235 --~~~~~~~~~~~----p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdG 281 (288)
T 2x9g_A 235 --EEEKDKWRRKV----PLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDG 281 (288)
T ss_dssp --HHHHHHHHHTC----TTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred --hHHHHHHHhhC----CCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECc
Confidence 11222233222 33345 78999999999999753 3567554 443
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=197.44 Aligned_cols=216 Identities=21% Similarity=0.153 Sum_probs=161.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~ 79 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++++|++|+++++++++ +
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~-~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 103 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGK-ALADEL---GNRAEFVSTNVTSEDSVLAAIEAANQLGR 103 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999754321 122222 3568999999999999887775 5
Q ss_pred CCEEEEcccCccc-----------CCCCCcchhhhHHHHHHHHHHHHHhhcC---------CccEEEEecchhhhccCCC
Q 020747 80 CDGVFHTASPVIF-----------LSDNPQADIVDPAVMGTLNVLRSCAKVH---------SIKRVVLTSSIGAMLLNET 139 (322)
Q Consensus 80 ~d~vih~A~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~i~~SS~~~~~~~~~ 139 (322)
+|++||+||.... ...+.+.+.+++|+.++.++++++...+ +.++||++||..++.+.+.
T Consensus 104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 183 (281)
T 3ppi_A 104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIG 183 (281)
T ss_dssp EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCTT
T ss_pred CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCCC
Confidence 7999999543211 1112357899999999999999886431 3458999999966654332
Q ss_pred CCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHc
Q 020747 140 PMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN 216 (322)
Q Consensus 140 ~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~ 216 (322)
...|+.||++.+.+.+.++.++ |+++++++||.|.++..... .......+..
T Consensus 184 ----------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---~~~~~~~~~~ 238 (281)
T 3ppi_A 184 ----------------------QTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV---GEEALAKFAA 238 (281)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT---CHHHHHHHHH
T ss_pred ----------------------CcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc---cHHHHHHHHh
Confidence 1569999999999999999885 89999999999988754321 1222333333
Q ss_pred CCCCCCCC-CcceeHHHHHHHHHHhhcCCCCCccE-EEec
Q 020747 217 GDQSFAFP-YIFVEIRDVVYAHIRALEVPKASGRY-LLAG 254 (322)
Q Consensus 217 g~~~~~~~-~~~i~~~D~a~~~~~~~~~~~~~g~~-~~~~ 254 (322)
.. +. ..+.+++|+|+++++++.+...+|.+ +++|
T Consensus 239 ~~----~~~~~~~~pedvA~~v~~l~s~~~~tG~~i~vdG 274 (281)
T 3ppi_A 239 NI----PFPKRLGTPDEFADAAAFLLTNGYINGEVMRLDG 274 (281)
T ss_dssp TC----CSSSSCBCHHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred cC----CCCCCCCCHHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 33 33 67889999999999999987777855 5544
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=195.73 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=149.9
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc---cCCCCcEEEEEccCCCccchHHhhC
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL---DGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|+..+++|+++||||+|+||++++++|+++|++|++++|+...... ...++ .....++.++++|++|+++++++++
T Consensus 1 M~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 79 (250)
T 3nyw_A 1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEK-VHDEIMRSNKHVQEPIVLPLDITDCTKADTEIK 79 (250)
T ss_dssp ----CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHH-HHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHH
T ss_pred CcccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHhccccCcceEEeccCCCHHHHHHHHH
Confidence 4444677999999999999999999999999999999997643221 11111 1122568899999999998887765
Q ss_pred -------CCCEEEEcccCcccC----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 -------GCDGVFHTASPVIFL----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 -------~~d~vih~A~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||..... ..+.+.+.+++|+.|+.++++++.+. .+.++||++||..+.++...
T Consensus 80 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~----- 154 (250)
T 3nyw_A 80 DIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFAD----- 154 (250)
T ss_dssp HHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CC-----
T ss_pred HHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCC-----
Confidence 589999999975331 12345688999999999999998543 14579999999866653321
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++.. .......
T Consensus 155 -----------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~-----------~~~~~~~--- 203 (250)
T 3nyw_A 155 -----------------GGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMA-----------KKAGTPF--- 203 (250)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHH-----------HHTTCCS---
T ss_pred -----------------CcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchh-----------hhcCCCc---
Confidence 1569999999999999999885 89999999999977531 1111111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
....+++++|+|+++++++..+.
T Consensus 204 -~~~~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 204 -KDEEMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp -CGGGSBCHHHHHHHHHHHHTSCT
T ss_pred -ccccCCCHHHHHHHHHHHHcCCC
Confidence 34557899999999999998754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=190.35 Aligned_cols=226 Identities=18% Similarity=0.117 Sum_probs=166.1
Q ss_pred CCCCCCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhh
Q 020747 1 MMSGEGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
||+ +++|+++||||+| .||.++++.|+++|++|++.+|+...... ....+.. ...++..+++|++|++++++++
T Consensus 1 M~~--l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 1 MLN--LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKE-LEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCC--CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred CcC--CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 666 7889999999887 89999999999999999999998644321 1111211 1346889999999999887766
Q ss_pred C-------CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCC
Q 020747 78 D-------GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETP 140 (322)
Q Consensus 78 ~-------~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~ 140 (322)
+ ++|++||+||.... ...+.+...+++|+.++..+.+++.+.+ +.++||++||..+..+.+..
T Consensus 78 ~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~ 157 (256)
T 4fs3_A 78 EQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNY 157 (256)
T ss_dssp HHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTT
T ss_pred HHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccc
Confidence 5 68999999985321 1223345677899999999998887653 23689999998766544321
Q ss_pred CCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcC
Q 020747 141 MTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLING 217 (322)
Q Consensus 141 ~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g 217 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|.++...... ........+...
T Consensus 158 ----------------------~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~-~~~~~~~~~~~~ 214 (256)
T 4fs3_A 158 ----------------------NVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVG-GFNTILKEIKER 214 (256)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT-THHHHHHHHHHH
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhcc-CCHHHHHHHHhc
Confidence 569999999999999999874 899999999999987654322 222333333333
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSV 256 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~ 256 (322)
. +...+..++|+|+++++++.. ...+|..+..++.
T Consensus 215 ~----Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 215 A----PLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp S----TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C----CCCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 3 455677899999999999965 3457766544443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=197.49 Aligned_cols=210 Identities=17% Similarity=0.158 Sum_probs=155.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC---eEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC--
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY---TVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
+++|+++||||+|+||++++++|+++|+ +|++.+|+..... +...++.. .+.++.++++|++|+++++++++
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLE-ELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHH-HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999997 9999998764321 11122211 13578999999999999988876
Q ss_pred -----CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 -----GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 -----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..+..+.+..
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~---- 185 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTG---- 185 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTC----
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCC----
Confidence 47999999996431 233456789999999999999998542 156799999998666543321
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
..|+.||++.+.+.+.++.+ .|+++++++||.|.++...................
T Consensus 186 ------------------~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~---- 243 (287)
T 3rku_A 186 ------------------SIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKD---- 243 (287)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTT----
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhcc----
Confidence 56999999999999999988 48999999999999875211111111122222221
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
...++++|+|+++++++..+.
T Consensus 244 ---~~p~~pedvA~~v~~l~s~~~ 264 (287)
T 3rku_A 244 ---TTPLMADDVADLIVYATSRKQ 264 (287)
T ss_dssp ---SCCEEHHHHHHHHHHHHTSCT
T ss_pred ---cCCCCHHHHHHHHHHHhCCCC
Confidence 234589999999999998754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=195.09 Aligned_cols=213 Identities=20% Similarity=0.162 Sum_probs=159.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh------hhhhhccCCCCcEEEEEccCCCccchHHhhC-
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT------EHLRELDGATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..+... +...++...+.++.++++|++|+++++++++
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 567999999999999999999999999999999998764221 1122222224678999999999999887776
Q ss_pred ------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCC
Q 020747 79 ------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||.... ...+.+.+.+++|+.++.++++++.+.+ +.++||++||..+..+...
T Consensus 87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----- 161 (285)
T 3sc4_A 87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWL----- 161 (285)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGS-----
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCC-----
Confidence 78999999997532 2233466788899999999999998763 4569999999855443211
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCC-ccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGT-VIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~-v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
....|+.||++.+.+.+.++.+ .|+++++++||. +-.+. .........
T Consensus 162 ----------------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~-----------~~~~~~~~~- 213 (285)
T 3sc4_A 162 ----------------RPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAA-----------VQNLLGGDE- 213 (285)
T ss_dssp ----------------CSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHH-----------HHHHHTSCC-
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHH-----------HHhhccccc-
Confidence 0156999999999999999988 489999999994 43321 222222211
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCCC-CCccEEEe
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVPK-ASGRYLLA 253 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~~-~~g~~~~~ 253 (322)
....+..++|+|+++++++..+. .+|.++..
T Consensus 214 --~~~r~~~pedvA~~~~~l~s~~~~~tG~~i~~ 245 (285)
T 3sc4_A 214 --AMARSRKPEVYADAAYVVLNKPSSYTGNTLLC 245 (285)
T ss_dssp --CCTTCBCTHHHHHHHHHHHTSCTTCCSCEEEH
T ss_pred --cccCCCCHHHHHHHHHHHhCCcccccceEEEE
Confidence 34556789999999999998763 55655444
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=193.91 Aligned_cols=197 Identities=18% Similarity=0.122 Sum_probs=148.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++.++.+|++|+++++++++ .
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQ-QQELLL---GNAVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---GGGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh---cCCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3589999999999999999999999999999999764321 111222 2358999999999998887766 5
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|++||+||.... ...+.+.+.+++|+.|+.++++++.+.+ ...+||++||..+..+.+.
T Consensus 78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------- 144 (235)
T 3l6e_A 78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKAN------------- 144 (235)
T ss_dssp CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCSS-------------
T ss_pred CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCCC-------------
Confidence 7999999997432 2344567899999999999999986542 1239999999866554332
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|.++....... . ....+++
T Consensus 145 ---------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~------------~----~~~~~~~ 199 (235)
T 3l6e_A 145 ---------ESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH------------V----DPSGFMT 199 (235)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------CBC
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC------------C----CCcCCCC
Confidence 1569999999999999999874 8999999999998875322100 0 2235678
Q ss_pred HHHHHHHHHHhhcCCC
Q 020747 230 IRDVVYAHIRALEVPK 245 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~ 245 (322)
++|+|+++++++.++.
T Consensus 200 pedvA~~v~~l~~~~~ 215 (235)
T 3l6e_A 200 PEDAAAYMLDALEARS 215 (235)
T ss_dssp HHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998754
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=198.82 Aligned_cols=226 Identities=17% Similarity=0.101 Sum_probs=157.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHH-CCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQ-RGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+|+||||+|+||++++++|++ +|++|++++|+.+... ....++...+.++.++.+|++|+++++++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ-AAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHH-HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHH-HHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999 9999999999753321 1222222223568899999999999888776
Q ss_pred -CCCEEEEcccCcccCC-----CCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCC------CCc
Q 020747 79 -GCDGVFHTASPVIFLS-----DNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMT------PDV 145 (322)
Q Consensus 79 -~~d~vih~A~~~~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~------~~~ 145 (322)
++|+|||+||...... ...+...+++|+.|+.++++++.+.+ ..++||++||..++++.....+ ...
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~ 160 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence 7899999999753311 13456789999999999999998862 1359999999866653111000 001
Q ss_pred cccCCCCCC-------------cccccccchhHHHHHHHHHHHHHHHHHH-------cCccEEEEcCCCccCCCCCCCCC
Q 020747 146 VIDETWFSN-------------PVLCKENKEWYSLAKTLAEEAAWKFAKE-------NGIDLVAIHPGTVIGPFFQPILN 205 (322)
Q Consensus 146 ~~~E~~~~~-------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~~~~~~~~rp~~v~G~~~~~~~~ 205 (322)
.++|+++.. ......+.+.|+.||++.+.+++.++.+ .|+++++++||.|.++....
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~--- 237 (276)
T 1wma_A 161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP--- 237 (276)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT---
T ss_pred ccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc---
Confidence 122211000 0000011156999999999999998876 48999999999998875321
Q ss_pred ccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC----CCCccEEEec
Q 020747 206 FGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP----KASGRYLLAG 254 (322)
Q Consensus 206 ~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~----~~~g~~~~~~ 254 (322)
..+.+++|+|+++++++..+ ...|.|+..+
T Consensus 238 -------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~~ 271 (276)
T 1wma_A 238 -------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVSEK 271 (276)
T ss_dssp -------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred -------------------cccCChhHhhhhHhhhhcCcccccccCceEeccC
Confidence 12468999999999999754 3466665443
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=193.54 Aligned_cols=187 Identities=17% Similarity=0.114 Sum_probs=144.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------- 78 (322)
++|+++||||+|+||++++++|+++|++|++++|+..... .....+.+|++|+++++++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 70 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----------DSNILVDGNKNWTEQEQSILEQTASSLQG 70 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-----------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4589999999999999999999999999999999865431 235678899999998877665
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+ ..++||++||..++.+.+.
T Consensus 71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 139 (236)
T 1ooe_A 71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPS----------- 139 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT-----------
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCC-----------
Confidence 68999999996432 1123456789999999999999998753 2358999999866543321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcC-----ccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG-----IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||.+.+.+++.++.+++ +++++++||.+.++... ...... ...
T Consensus 140 -----------~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~-----------~~~~~~----~~~ 193 (236)
T 1ooe_A 140 -----------MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR-----------KWMPNA----DHS 193 (236)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHH-----------HHSTTC----CGG
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchh-----------hcCCCc----ccc
Confidence 15699999999999999998754 99999999999886421 111111 223
Q ss_pred cceeHHHHHHHHHHhh
Q 020747 226 IFVEIRDVVYAHIRAL 241 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~ 241 (322)
.++.++|+|++++.++
T Consensus 194 ~~~~~~dvA~~i~~~l 209 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWT 209 (236)
T ss_dssp GCBCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4577999999999666
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=193.57 Aligned_cols=213 Identities=17% Similarity=0.158 Sum_probs=154.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+|+++||||+|+||++++++|+++| +.|++.+|+..... +...+. +.++.++++|++|+++++++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLK-KLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGHG 77 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHH-HHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHH-HHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999985 78888888753321 111111 3578999999999999887776
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.++..+++|+.|+.++++++.+.+ + ++||++||..+..+.+.
T Consensus 78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~---------- 146 (254)
T 3kzv_A 78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFSS---------- 146 (254)
T ss_dssp CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSCC----------
T ss_pred CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCCC----------
Confidence 68999999997432 2234567799999999999999984421 3 79999999855543322
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCCc------cHHHHHHHHcCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILNF------GAEVILNLINGDQSFA 222 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~~------~~~~~~~~~~g~~~~~ 222 (322)
...|+.||.+.+.+.+.++.++ ++++++++||.|.++........ .......+....
T Consensus 147 ------------~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 210 (254)
T 3kzv_A 147 ------------WGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLK---- 210 (254)
T ss_dssp ------------SHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHH----
T ss_pred ------------cchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHH----
Confidence 1569999999999999999886 99999999999999865432110 122222222221
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC---CCccEE
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK---ASGRYL 251 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~---~~g~~~ 251 (322)
+...+.+++|+|+++++++.... .+|.++
T Consensus 211 ~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i 242 (254)
T 3kzv_A 211 ENNQLLDSSVPATVYAKLALHGIPDGVNGQYL 242 (254)
T ss_dssp TTC----CHHHHHHHHHHHHHCCCGGGTTCEE
T ss_pred hcCCcCCcccHHHHHHHHHhhcccCCCCccEE
Confidence 45678899999999999987652 567554
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=198.76 Aligned_cols=218 Identities=17% Similarity=0.088 Sum_probs=159.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEE-eCCCCcChhhhhhcc-CCCCcEEEEEccCCCcc------------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATV-RDPNSPKTEHLRELD-GATERLHLFKANLLEEG------------ 71 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~------------ 71 (322)
+++|+++||||+|+||++++++|+++|++|++++ |+..... ....++. ..+.++.++++|++|++
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN-ALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 4568999999999999999999999999999999 7653221 1122221 12356899999999999
Q ss_pred -----chHHhhC-------CCCEEEEcccCccc-----CC--------------CCCcchhhhHHHHHHHHHHHHHhhcC
Q 020747 72 -----SFDSAVD-------GCDGVFHTASPVIF-----LS--------------DNPQADIVDPAVMGTLNVLRSCAKVH 120 (322)
Q Consensus 72 -----~~~~~~~-------~~d~vih~A~~~~~-----~~--------------~~~~~~~~~~N~~~~~~l~~~~~~~~ 120 (322)
+++++++ ++|+|||+||.... .. .+.+...+++|+.++.++++++.+.+
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766 78999999996432 11 23455789999999999999987531
Q ss_pred ---C------ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEE
Q 020747 121 ---S------IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLV 188 (322)
Q Consensus 121 ---~------~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ 188 (322)
+ .++||++||..+..+.+. ...|+.||++.+.+.+.++.++ |++++
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~~~~~----------------------~~~Y~asKaal~~l~~~la~el~~~gIrvn 260 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQPLLG----------------------YTIYTMAKGALEGLTRSAALELAPLQIRVN 260 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HhcCCcCCCCCcEEEEECchhhccCCCC----------------------cHHHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 3 579999999865543221 1569999999999999999875 89999
Q ss_pred EEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC-cceeHHHHHHHHHHhhcC--CCCCccE-EEecC
Q 020747 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY-IFVEIRDVVYAHIRALEV--PKASGRY-LLAGS 255 (322)
Q Consensus 189 ~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~i~~~D~a~~~~~~~~~--~~~~g~~-~~~~~ 255 (322)
+|+||.|.++. .. . ...+..+.... +.. .+.+++|+|+++++++.. ....|.+ .+.++
T Consensus 261 ~v~PG~v~T~~-~~-~---~~~~~~~~~~~----p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG 322 (328)
T 2qhx_A 261 GVGPGLSVLVD-DM-P---PAVWEGHRSKV----PLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGG 322 (328)
T ss_dssp EEEESSBSCCC-CS-C---HHHHHHHHTTC----TTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred EEecCcccCCc-cc-c---HHHHHHHHhhC----CCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 99999999987 22 1 22333333322 333 578999999999999964 3456754 45443
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=198.81 Aligned_cols=211 Identities=16% Similarity=0.150 Sum_probs=152.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... ...+.++++|++|+++++++++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD-AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999764322 111222111 2336899999999998887775
Q ss_pred -CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---C--ccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 -GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---S--IKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 -~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~--~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|+|||+||.... ...+.+++.+++|+.|+.++++++.+.+ + .++||++||..+..+.+.
T Consensus 110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~------- 182 (281)
T 4dry_A 110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPN------- 182 (281)
T ss_dssp SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTT-------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCC-------
Confidence 57999999996422 2344567799999999999998876642 1 468999999866654332
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA- 222 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~- 222 (322)
...|+.||++.+.+.+.++.+ +|+++++++||.|.++........ .. ....
T Consensus 183 ---------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--------~~--~~~~~ 237 (281)
T 4dry_A 183 ---------------SAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTG--------VL--QANGE 237 (281)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CE--------EE--CTTSC
T ss_pred ---------------ChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcch--------hh--hhhhc
Confidence 156999999999999999987 489999999999988753221100 00 1111
Q ss_pred -CCCcceeHHHHHHHHHHhhcCCCCCcc
Q 020747 223 -FPYIFVEIRDVVYAHIRALEVPKASGR 249 (322)
Q Consensus 223 -~~~~~i~~~D~a~~~~~~~~~~~~~g~ 249 (322)
....++.++|+|+++++++..+....+
T Consensus 238 ~~~~~~~~pedvA~~v~fL~s~~~~~~i 265 (281)
T 4dry_A 238 VAAEPTIPIEHIAEAVVYMASLPLSANV 265 (281)
T ss_dssp EEECCCBCHHHHHHHHHHHHHSCTTEEE
T ss_pred ccccCCCCHHHHHHHHHHHhCCCccCcc
Confidence 334578999999999999998765443
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=193.82 Aligned_cols=217 Identities=17% Similarity=0.098 Sum_probs=159.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEE-eCCCCcChhhhhhcc-CCCCcEEEEEccCCCcc------------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATV-RDPNSPKTEHLRELD-GATERLHLFKANLLEEG------------ 71 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~------------ 71 (322)
+++|+++||||+|+||++++++|+++|++|++++ |+..... ....++. ..+.++.++++|++|++
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN-ALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 85 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH-HHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence 5678999999999999999999999999999999 7653221 1222221 12357899999999999
Q ss_pred -----chHHhhC-------CCCEEEEcccCccc-----CC--------------CCCcchhhhHHHHHHHHHHHHHhhcC
Q 020747 72 -----SFDSAVD-------GCDGVFHTASPVIF-----LS--------------DNPQADIVDPAVMGTLNVLRSCAKVH 120 (322)
Q Consensus 72 -----~~~~~~~-------~~d~vih~A~~~~~-----~~--------------~~~~~~~~~~N~~~~~~l~~~~~~~~ 120 (322)
+++++++ ++|++||+||.... .. .+.+...+++|+.++.++++++.+.+
T Consensus 86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m 165 (291)
T 1e7w_A 86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 165 (291)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8877766 78999999996432 11 23456789999999999999987531
Q ss_pred ---C------ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEE
Q 020747 121 ---S------IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLV 188 (322)
Q Consensus 121 ---~------~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ 188 (322)
+ .++||++||..+..+.+. ...|+.||.+.+.+.+.++.++ |++++
T Consensus 166 ~~~~~~~~~~~g~Iv~isS~~~~~~~~~----------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 223 (291)
T 1e7w_A 166 AGTPAKHRGTNYSIINMVDAMTNQPLLG----------------------YTIYTMAKGALEGLTRSAALELAPLQIRVN 223 (291)
T ss_dssp HTSCGGGSCSCEEEEEECCTTTTSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HhcCCCCCCCCcEEEEEechhhcCCCCC----------------------CchhHHHHHHHHHHHHHHHHHHHhcCeEEE
Confidence 3 479999999865543321 1569999999999999999874 89999
Q ss_pred EEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC-cceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY-IFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 189 ~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
+++||.|.++. . .. ......+.... +.. .+..++|+|+++++++... ..+|.+ .+.+
T Consensus 224 ~v~PG~v~T~~-~--~~--~~~~~~~~~~~----p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdG 284 (291)
T 1e7w_A 224 GVGPGLSVLVD-D--MP--PAVWEGHRSKV----PLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDG 284 (291)
T ss_dssp EEEESSBCCGG-G--SC--HHHHHHHHTTC----TTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred EEeeCCccCCc-c--CC--HHHHHHHHhhC----CCCCCCCCHHHHHHHHHHHhCCcccCccCcEEEECC
Confidence 99999998876 3 21 22233333322 333 5789999999999999743 356755 4444
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-26 Score=192.84 Aligned_cols=212 Identities=16% Similarity=0.115 Sum_probs=156.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccC--CCccchHHhhC---
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANL--LEEGSFDSAVD--- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl--~~~~~~~~~~~--- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++... ..++.++.+|+ +|+++++++++
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLR-QVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999764322 111111111 23678899999 88888877665
Q ss_pred ----CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ----GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|++||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..+..+.+.
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------ 161 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRAN------ 161 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTT------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCC------
Confidence 68999999996421 223345678999999999999998542 25679999999866654332
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||.+.+.+.+.++.+++ ++++.++||.|.++.. ....... .
T Consensus 162 ----------------~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~~-----------~~~~~~~----~ 210 (252)
T 3f1l_A 162 ----------------WGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMR-----------ASAFPTE----D 210 (252)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHHH-----------HHHCTTC----C
T ss_pred ----------------CchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCchh-----------hhhCCcc----c
Confidence 15699999999999999999873 8999999999877531 1111111 2
Q ss_pred CCcceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 224 PYIFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
...+.+++|+|+++++++... ..+|.. .+.|
T Consensus 211 ~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdg 244 (252)
T 3f1l_A 211 PQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP 244 (252)
T ss_dssp GGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSC
T ss_pred hhccCCHHHHHHHHHHHcCccccCCCCCEEEeCC
Confidence 345678999999999999764 356644 4444
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=188.05 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=152.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCD 81 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d 81 (322)
.+++|+|+||||+|+||++++++|+++|++|++++|+. +...++ .++..+ +|+ .++++++++ ++|
T Consensus 16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-----~~~~~~----~~~~~~-~D~--~~~~~~~~~~~~~iD 83 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-----ELLKRS----GHRYVV-CDL--RKDLDLLFEKVKEVD 83 (249)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHT----CSEEEE-CCT--TTCHHHHHHHSCCCS
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHhh----CCeEEE-eeH--HHHHHHHHHHhcCCC
Confidence 45689999999999999999999999999999999875 222222 246667 999 455665554 789
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------------- 149 (249)
T 1o5i_A 84 ILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIEN-------------- 149 (249)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT--------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCCC--------------
Confidence 99999996432 233456788999999998887665432 15689999999855543221
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHH-HHHcCCCCCCCCCccee
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVIL-NLINGDQSFAFPYIFVE 229 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~i~ 229 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.++++....... .... .+.... +...+.+
T Consensus 150 --------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~----p~~~~~~ 214 (249)
T 1o5i_A 150 --------LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS---EEKKKQVESQI----PMRRMAK 214 (249)
T ss_dssp --------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC---HHHHHHHHTTS----TTSSCBC
T ss_pred --------CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccch---hhHHHHHHhcC----CCCCCcC
Confidence 156999999999999999887 49999999999999986321111 1111 222222 4456889
Q ss_pred HHHHHHHHHHhhcCC--CCCc-cEEEecC
Q 020747 230 IRDVVYAHIRALEVP--KASG-RYLLAGS 255 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~--~~~g-~~~~~~~ 255 (322)
++|+|+++++++... ...| .+++.++
T Consensus 215 ~~dvA~~i~~l~s~~~~~~tG~~~~vdgG 243 (249)
T 1o5i_A 215 PEEIASVVAFLCSEKASYLTGQTIVVDGG 243 (249)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence 999999999998753 3456 4556554
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-26 Score=194.98 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=147.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC----CCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG----CDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~d~vi 84 (322)
|+|+||||+|+||++++++|+++|++|++++|+..+... . +.+|++|+++++++++. +|+||
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------------~-~~~Dl~~~~~v~~~~~~~~~~id~lv 67 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------------D-LSTAEGRKQAIADVLAKCSKGMDGLV 67 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------------C-TTSHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------------c-cccCCCCHHHHHHHHHHhCCCCCEEE
Confidence 789999999999999999999999999999997644210 1 56899999999988864 59999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc-----
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV----- 156 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~----- 156 (322)
|+||.... ..+++..+++|+.++.++++++.+. .+.++||++||..++.+..........+.+.+.....
T Consensus 68 ~~Ag~~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
T 1fjh_A 68 LCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145 (257)
T ss_dssp ECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred ECCCCCCC--cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhc
Confidence 99997542 2447899999999999999998743 2557999999985553211100001111111100000
Q ss_pred -cccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-CCCcceeHH
Q 020747 157 -LCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIR 231 (322)
Q Consensus 157 -~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~ 231 (322)
........|+.||.+.+.+++.++.+ +|+++++++||.+.++........ ......... +. +...+.+++
T Consensus 146 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~ 220 (257)
T 1fjh_A 146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQD--PRYGESIAK---FVPPMGRRAEPS 220 (257)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------CCCSTTSCCCTH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccc--hhHHHHHHh---cccccCCCCCHH
Confidence 00011256999999999999998877 489999999999999864321010 001111110 01 334578999
Q ss_pred HHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 232 DVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 232 D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
|+|+++++++..+ ...|.+ .+.++
T Consensus 221 dvA~~~~~l~~~~~~~~tG~~~~vdgG 247 (257)
T 1fjh_A 221 EMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp HHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhCchhcCCcCCEEEECCC
Confidence 9999999999765 455755 55543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-26 Score=194.03 Aligned_cols=222 Identities=18% Similarity=0.108 Sum_probs=164.7
Q ss_pred CCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||+ |+||++++++|+++|++|++++|+......+...++.. .+.++.++++|++|+++++++++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA 97 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 567999999999 99999999999999999999998875542233333221 14578999999999998887765
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+. .+.++||++||..+..+...
T Consensus 98 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~-------- 169 (267)
T 3gdg_A 98 DFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFP-------- 169 (267)
T ss_dssp HTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSS--------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCC--------
Confidence 57999999997533 133456779999999999999998442 14579999999866554311
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.....|+.||++.+.+++.++.+++ ++++.+.||.+.++..... .......+.... +..
T Consensus 170 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~----~~~ 230 (267)
T 3gdg_A 170 ------------QEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV---PKETQQLWHSMI----PMG 230 (267)
T ss_dssp ------------SCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS---CHHHHHHHHTTS----TTS
T ss_pred ------------CCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC---CHHHHHHHHhcC----CCC
Confidence 0015699999999999999998863 8999999999988764322 122222233333 567
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
.+.+++|+|+++++++... ..+|.. ++.|
T Consensus 231 r~~~~~dva~~~~~l~s~~~~~itG~~i~vdg 262 (267)
T 3gdg_A 231 RDGLAKELKGAYVYFASDASTYTTGADLLIDG 262 (267)
T ss_dssp SCEETHHHHHHHHHHHSTTCTTCCSCEEEEST
T ss_pred CCcCHHHHHhHhheeecCccccccCCEEEECC
Confidence 7889999999999999753 356754 4443
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=192.27 Aligned_cols=204 Identities=16% Similarity=0.068 Sum_probs=151.0
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|+.+.++|+++||||+|+||++++++|+++|++|++++|+..... .....+.+|++|+++++++++
T Consensus 1 M~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~D~~~~~~v~~~~~~~~ 69 (241)
T 1dhr_A 1 MAASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----------SASVIVKMTDSFTEQADQVTAEVG 69 (241)
T ss_dssp -----CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----------SEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-----------CCcEEEEcCCCCHHHHHHHHHHHH
Confidence 344456789999999999999999999999999999999865431 235678899999998887765
Q ss_pred ------CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ------GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ------~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.++.++++++.+.+. .++||++||..++.+.+.
T Consensus 70 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------ 143 (241)
T 1dhr_A 70 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPG------ 143 (241)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT------
T ss_pred HHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCCC------
Confidence 68999999996532 11234567899999999999999987531 258999999866543321
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.+.++... ......
T Consensus 144 ----------------~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~-----------~~~~~~-- 194 (241)
T 1dhr_A 144 ----------------MIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR-----------KSMPEA-- 194 (241)
T ss_dssp ----------------BHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHH-----------HHSTTS--
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcccc-----------ccCcch--
Confidence 1569999999999999998764 599999999998775311 111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCCC--CCccE-EEe
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVPK--ASGRY-LLA 253 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~~--~~g~~-~~~ 253 (322)
....++.++|+|+++++++.... ..|.+ .+.
T Consensus 195 --~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~ 228 (241)
T 1dhr_A 195 --DFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVV 228 (241)
T ss_dssp --CGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEE
T ss_pred --hhccCCCHHHHHHHHHHHhcCCCcCccceEEEEe
Confidence 22346789999999999997542 34644 443
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=199.90 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=151.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... +...++...+.++.++.+|++|+++++++++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE-ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHH-HHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 56789999999999999999999999999999999753321 1222222223578999999999998887765
Q ss_pred CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+||..... ..+.+...+++|+.++.++++++.+. .+.++||++||..++.+.+.
T Consensus 108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~----------- 176 (272)
T 1yb1_A 108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF----------- 176 (272)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH-----------
T ss_pred CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCC-----------
Confidence 689999999965321 12345678999999999988887543 25689999999855432211
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc------CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN------GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.+|++.+.+++.++.++ |++++++|||.+.++.... . . . ..
T Consensus 177 -----------~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~--~-----~-~---------~~ 228 (272)
T 1yb1_A 177 -----------LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN--P-----S-T---------SL 228 (272)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC--T-----H-H---------HH
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc--c-----c-c---------cc
Confidence 1569999999999999998875 8999999999999876321 0 0 0 12
Q ss_pred CcceeHHHHHHHHHHhhcCCC
Q 020747 225 YIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~ 245 (322)
..+++++|+|++++.++.++.
T Consensus 229 ~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 229 GPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp CCCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHcCC
Confidence 346789999999999998753
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=188.66 Aligned_cols=219 Identities=18% Similarity=0.135 Sum_probs=160.5
Q ss_pred CCCC--CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSG--EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~--~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||.. ++++|+++||||++.||+++++.|+++|++|++.+|+..+.. .+...+++|++|+++++++++
T Consensus 2 Mm~dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~ 70 (261)
T 4h15_A 2 MMIEFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL-----------PEELFVEADLTTKEGCAIVAE 70 (261)
T ss_dssp CCCCCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS-----------CTTTEEECCTTSHHHHHHHHH
T ss_pred cchhccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC-----------CcEEEEEcCCCCHHHHHHHHH
Confidence 5544 357899999999999999999999999999999999764321 122467899999998877665
Q ss_pred -------CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCC
Q 020747 79 -------GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 -------~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~ 141 (322)
++|++||+||... +.+.+.|++.+++|+.++.++.+++.+.+ +.++||++||..+..+.+..
T Consensus 71 ~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~- 149 (261)
T 4h15_A 71 ATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPES- 149 (261)
T ss_dssp HHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTT-
T ss_pred HHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCc-
Confidence 5899999998532 23445678899999999999999876542 45789999998666543310
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCC--------C---cc
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPIL--------N---FG 207 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~--------~---~~ 207 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.|..+...... . ..
T Consensus 150 --------------------~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~ 209 (261)
T 4h15_A 150 --------------------TTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGG 209 (261)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhH
Confidence 1569999999999999999874 999999999999886421100 0 00
Q ss_pred HHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 208 AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 208 ~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
........... +...+..++|+|+++++++... ..+|.. .+.|+
T Consensus 210 ~~~~~~~~~~~----PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 210 KKIIMDGLGGI----PLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp HHHHHHHTTCC----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhcCC----CCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 11111222222 4566789999999999999643 456755 45554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=189.01 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=152.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
+|+++||||+|+||++++++|+++|++|++++|+...... ...++. ..+.++.++++|++|+++++++++ +
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEK-IAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999999997643221 111111 124578999999999999988887 6
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|++||+||.... ...+.+...+++|+.|+.++++++.+.+ +.+++|++||..+..+.+.
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~------------- 147 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPY------------- 147 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTT-------------
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCC-------------
Confidence 8999999997533 1334567899999999999999987632 2357888888755544322
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHH
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 231 (322)
...|+.||++.+.+.+.+..+. ++++++++||.|.++........ . ....+++++
T Consensus 148 ---------~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~~~-----------~----~~~~~~~p~ 203 (235)
T 3l77_A 148 ---------GGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKPGK-----------P----KEKGYLKPD 203 (235)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCSCC-----------C----GGGTCBCHH
T ss_pred ---------cchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccCCc-----------c----cccCCCCHH
Confidence 1569999999999999986554 99999999999988764322110 0 223567899
Q ss_pred HHHHHHHHhhcCCC
Q 020747 232 DVVYAHIRALEVPK 245 (322)
Q Consensus 232 D~a~~~~~~~~~~~ 245 (322)
|+|+++++++..+.
T Consensus 204 dva~~v~~l~~~~~ 217 (235)
T 3l77_A 204 EIAEAVRCLLKLPK 217 (235)
T ss_dssp HHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999998864
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=195.89 Aligned_cols=211 Identities=21% Similarity=0.213 Sum_probs=147.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. ....++. ....++.++.+|++|+++++++++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHH-HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999753321 1111111 112468889999999999887776
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHH----HHHHHHHHhhcCCc--cEEEEecchhhhccCCCCCCCCc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMG----TLNVLRSCAKVHSI--KRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~----~~~l~~~~~~~~~~--~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+...+++|+.+ +..+++.+++. +. ++||++||..+....+.
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g~iv~isS~~~~~~~~~------ 181 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDGHIININSMSGHRVLPL------ 181 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSCEEEEECCGGGTSCCSC------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCceEEEEcChhhcccCCC------
Confidence 78999999996432 1233466789999999 55555566554 54 79999999854311110
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
.+ ...|+.+|.+.+.+++.++.+ .++++++++||.|.++.................
T Consensus 182 --------~~------~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----- 242 (279)
T 1xg5_A 182 --------SV------THFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY----- 242 (279)
T ss_dssp --------GG------GHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH-----
T ss_pred --------CC------CchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhhhc-----
Confidence 01 156999999999999988876 379999999999988752111111111111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCCC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
....+++++|+|+++++++..+.
T Consensus 243 --~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 243 --EQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp --C---CBCHHHHHHHHHHHHHSCT
T ss_pred --ccccCCCHHHHHHHHHHHhcCCc
Confidence 23457899999999999998753
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=190.38 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=145.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||++++++|+++|++|++++|+..... +...++ ..++..+.+|++|+++++++++ ++|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 76 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQ-ELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWCNID 76 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh---cCceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 57999999999999999999999999999998753221 111222 2468899999999999988775 579
Q ss_pred EEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++||+||... ....+.+...+++|+.|+.++++++.+. .+.++||++||..+..+.+.
T Consensus 77 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~------------- 143 (248)
T 3asu_A 77 ILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAG------------- 143 (248)
T ss_dssp EEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTT-------------
T ss_pred EEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCC-------------
Confidence 9999999642 1233456789999999999999998742 15579999999865543221
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCcc-CCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVI-GPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~-G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.|. .+................. ....++
T Consensus 144 ---------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~~~~-------~~~~~~ 207 (248)
T 3asu_A 144 ---------GNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTY-------QNTVAL 207 (248)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------CCB
T ss_pred ---------CchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHHHHHH-------hccCCC
Confidence 1569999999999999999874 8999999999999 4542211000000000100 112346
Q ss_pred eHHHHHHHHHHhhcCC
Q 020747 229 EIRDVVYAHIRALEVP 244 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~ 244 (322)
+++|+|+++++++..+
T Consensus 208 ~p~dvA~~v~~l~s~~ 223 (248)
T 3asu_A 208 TPEDVSEAVWWVSTLP 223 (248)
T ss_dssp CHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCC
Confidence 8999999999999864
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=188.45 Aligned_cols=193 Identities=22% Similarity=0.205 Sum_probs=138.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------C
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------G 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (322)
++|+|+||||+|+||++++++|+++|++|++++|+..... ....++ .++..+.+|++|+++++++++ +
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQ-ALAAEL----EGALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHS----TTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh----hhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999998753221 111111 257889999999998887665 6
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||.... ...+.+...+++|+.++.++++.+.+. .+.++||++||..++.+.+.
T Consensus 79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------ 146 (234)
T 2ehd_A 79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKG------------ 146 (234)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTT------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCC------------
Confidence 8999999996432 223446778999999998777765432 25689999999855433221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... . . . ..++
T Consensus 147 ----------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-------~---------~-~~~~ 198 (234)
T 2ehd_A 147 ----------GAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT-P-------G---------Q-AWKL 198 (234)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------C
T ss_pred ----------CchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc-c-------c---------c-cCCC
Confidence 156999999999999998876 489999999999987643210 0 0 1 1146
Q ss_pred eHHHHHHHHHHhhcCC
Q 020747 229 EIRDVVYAHIRALEVP 244 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~ 244 (322)
+++|+|+++++++..+
T Consensus 199 ~~~dvA~~~~~l~~~~ 214 (234)
T 2ehd_A 199 KPEDVAQAVLFALEMP 214 (234)
T ss_dssp CHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhCCC
Confidence 8999999999999865
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=189.84 Aligned_cols=204 Identities=18% Similarity=0.226 Sum_probs=155.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC---CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG---YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+|+||||+|+||++++++|+++| ++|++++|+..... .+.++.....++.++.+|++|+++++++++
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~--~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 96 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK--ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEG 96 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH--HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH--HHHHhhccCCceEEEEecCCChHHHHHHHHHHHH
Confidence 457899999999999999999999999 99999999876542 233322223578999999999999988877
Q ss_pred -----CCCEEEEcccCcc-c-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---------C-----ccEEEEecchhh
Q 020747 79 -----GCDGVFHTASPVI-F-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---------S-----IKRVVLTSSIGA 133 (322)
Q Consensus 79 -----~~d~vih~A~~~~-~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~-----~~~~i~~SS~~~ 133 (322)
++|+|||+||... . ...+.+...+++|+.++.++++++.+.+ + .++||++||..+
T Consensus 97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 176 (267)
T 1sny_A 97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 176 (267)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccc
Confidence 7999999999754 1 2234556789999999999999987641 1 468999999855
Q ss_pred hccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHH
Q 020747 134 MLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEV 210 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~ 210 (322)
+.+... ..+ ...|+.+|++.+.+++.++.+ .|++++++|||.|.++....
T Consensus 177 ~~~~~~-------------~~~------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------- 229 (267)
T 1sny_A 177 SIQGNT-------------DGG------MYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS-------- 229 (267)
T ss_dssp CSTTCC-------------SCC------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT--------
T ss_pred cccCCC-------------CCC------chHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC--------
Confidence 543210 001 156999999999999999887 59999999999998875321
Q ss_pred HHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEE
Q 020747 211 ILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLL 252 (322)
Q Consensus 211 ~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~ 252 (322)
..++.++|+|+.++.++... ...|.|+.
T Consensus 230 --------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~ 259 (267)
T 1sny_A 230 --------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVN 259 (267)
T ss_dssp --------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEEC
T ss_pred --------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEc
Confidence 12357899999999998753 34565543
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=195.43 Aligned_cols=216 Identities=15% Similarity=0.168 Sum_probs=158.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh------hhhhhccCCCCcEEEEEccCCCccchHHhhC-
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT------EHLRELDGATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..+... ....++...+.++.++++|++|+++++++++
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 457999999999999999999999999999999998765321 1122222234678999999999999887776
Q ss_pred ------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 ------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|+|||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..++.+...
T Consensus 123 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~----- 197 (346)
T 3kvo_A 123 AIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWF----- 197 (346)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGT-----
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCC-----
Confidence 78999999996432 223446788999999999999998653 24579999999855433111
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
.....|+.||++.+.+++.++.++ |++++.+.||.+.... +. ..+.+..
T Consensus 198 ---------------~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~----------~~-~~~~~~~--- 248 (346)
T 3kvo_A 198 ---------------KQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA----------AM-DMLGGPG--- 248 (346)
T ss_dssp ---------------SSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH----------HH-HHHCC-----
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH----------HH-Hhhcccc---
Confidence 011569999999999999999885 8999999999633221 11 1122211
Q ss_pred CCCcceeHHHHHHHHHHhhcCC-CCCccEEEecC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP-KASGRYLLAGS 255 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~-~~~g~~~~~~~ 255 (322)
....+..++|+|+++++++... ..+|.+++.++
T Consensus 249 ~~~r~~~pedvA~~v~~L~s~~~~itG~~ivdgg 282 (346)
T 3kvo_A 249 IESQCRKVDIIADAAYSIFQKPKSFTGNFVIDEN 282 (346)
T ss_dssp CGGGCBCTHHHHHHHHHHHTSCTTCCSCEEEHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcCCCCCceEEECCc
Confidence 3345678999999999999873 24676665443
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=189.64 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=145.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCC----CEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGC----DGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~----d~vi 84 (322)
|+|+||||+|+||++++++|+++|++|++++|+.+... +...++ ..++.++.+|++|+++++++++.+ |+||
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv 77 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLS-TVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV 77 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence 78999999999999999999999999999999764321 111222 356889999999999999888754 9999
Q ss_pred EcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCccc
Q 020747 85 HTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVL 157 (322)
Q Consensus 85 h~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~ 157 (322)
|+||.... ...+.+.+.+++|+.|+.++++++.+.+ ...+||++||..+..+.+.
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~------------------ 139 (230)
T 3guy_A 78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQ------------------ 139 (230)
T ss_dssp ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTT------------------
T ss_pred EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCC------------------
Confidence 99996432 2334567789999999999999987652 1238999999866554332
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHH
Q 020747 158 CKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVV 234 (322)
Q Consensus 158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a 234 (322)
...|+.||++.+.+.+.++.++ |++++.++||.+.++...... ... ....+.+++|+|
T Consensus 140 ----~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------~~~----~~~~~~~~~dvA 200 (230)
T 3guy_A 140 ----ESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSG-----------KSL----DTSSFMSAEDAA 200 (230)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------CCCHHHHH
T ss_pred ----CchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcC-----------CCC----CcccCCCHHHHH
Confidence 1569999999999999999886 899999999999887533211 001 335677899999
Q ss_pred HHHHHhhcCCC
Q 020747 235 YAHIRALEVPK 245 (322)
Q Consensus 235 ~~~~~~~~~~~ 245 (322)
+++++++.++.
T Consensus 201 ~~i~~l~~~~~ 211 (230)
T 3guy_A 201 LMIHGALANIG 211 (230)
T ss_dssp HHHHHHCCEET
T ss_pred HHHHHHHhCcC
Confidence 99999998643
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=190.10 Aligned_cols=221 Identities=15% Similarity=0.064 Sum_probs=158.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+.... +.+... ...++.++++|++|+++++++++
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~--~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERL--RELEVA--HGGNAVGVVGDVRSLQDQKRAAERCLAAFG 78 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHH--TBTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHH--HHHHHH--cCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5679999999999999999999999999999999875332 111111 13578999999999998877765
Q ss_pred CCCEEEEcccCcccC------CC----CCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 GCDGVFHTASPVIFL------SD----NPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~~------~~----~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|++||+||..... .. +.++..+++|+.++.++++++.+.+ ..+++|++||..++.+.+.
T Consensus 79 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------- 151 (281)
T 3zv4_A 79 KIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGG------- 151 (281)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSSS-------
T ss_pred CCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCCC-------
Confidence 679999999964321 11 1256788999999999999987642 2259999999866654332
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCccH-------HHHHHHHcC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGA-------EVILNLING 217 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~-------~~~~~~~~g 217 (322)
...|+.||.+.+.+.+.++.++ +++++.++||.|.++.......... .....+...
T Consensus 152 ---------------~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (281)
T 3zv4_A 152 ---------------GPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSV 216 (281)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHT
T ss_pred ---------------CchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhc
Confidence 1569999999999999999885 4999999999999886432111000 011112222
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCCC---CCccEEEecCC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVPK---ASGRYLLAGSV 256 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~~---~~g~~~~~~~~ 256 (322)
. +...+..++|+|+++++++.++. .+|..+..++.
T Consensus 217 ~----p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG 254 (281)
T 3zv4_A 217 L----PIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGG 254 (281)
T ss_dssp C----TTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSS
T ss_pred C----CCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCC
Confidence 2 55668899999999999998332 56755443333
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=191.85 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=145.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC-------CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG-------CD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-------~d 81 (322)
|+++||||+|+||++++++|+++|++|++++|+..... +...++... .++..+.+|++|+++++++++. +|
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~-~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 99 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQ-ALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFATLR 99 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSSCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999999753321 122222221 4688999999999999888764 59
Q ss_pred EEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---Ccc-EEEEecchhhhccCCCCCCCCccccCCC
Q 020747 82 GVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIK-RVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 82 ~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~-~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|||+||.... ...+.++..+++|+.|+.++++++.+.+ +.+ +||++||..++.+.+.
T Consensus 100 ~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~------------ 167 (272)
T 2nwq_A 100 GLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPG------------ 167 (272)
T ss_dssp EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTT------------
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCC------------
Confidence 99999996431 2234567789999999999888876431 456 9999999865543221
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
...|+.+|.+.+.+.+.++.+. |+++++++||.+.++................. ....++
T Consensus 168 ----------~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~-------~~~~~~ 230 (272)
T 2nwq_A 168 ----------SHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTY-------AGAHPI 230 (272)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------CCCCB
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHHHHhh-------ccCCCC
Confidence 1569999999999999998764 89999999999998863211100000011111 112347
Q ss_pred eHHHHHHHHHHhhcCC
Q 020747 229 EIRDVVYAHIRALEVP 244 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~ 244 (322)
.++|+|+++++++..+
T Consensus 231 ~pedvA~~v~~l~s~~ 246 (272)
T 2nwq_A 231 QPEDIAETIFWIMNQP 246 (272)
T ss_dssp CHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHhCCC
Confidence 8999999999999864
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=189.69 Aligned_cols=214 Identities=14% Similarity=0.053 Sum_probs=149.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|+++||||+|+||++++++|+++|++|++++|+..... .+.++...+.++..+ |+++++++++ ++|
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~l~~~~~~~~~~-----d~~~v~~~~~~~~~~~g~iD 74 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD--ELEAFAETYPQLKPM-----SEQEPAELIEAVTSAYGQVD 74 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH--HHHHHHHHCTTSEEC-----CCCSHHHHHHHHHHHHSCCC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHHHhcCCcEEEE-----CHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999999999999999999764432 111121112233333 5555555544 789
Q ss_pred EEEEcccCc-cc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPV-IF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~-~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|||+||.. .. ...+.++..+++|+.++.++++++.+.+ +.++||++||..++.+.+.
T Consensus 75 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 141 (254)
T 1zmt_A 75 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKE------------- 141 (254)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTT-------------
T ss_pred EEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCC-------------
Confidence 999999975 21 2334567899999999999999986431 4579999999866543321
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc-----cHHHHHHHHcCCCCCCCC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF-----GAEVILNLINGDQSFAFP 224 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~-----~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.++ |+++++++||.|+|+........ .......+.... +.
T Consensus 142 ---------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~----p~ 208 (254)
T 1zmt_A 142 ---------LSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT----AL 208 (254)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS----SS
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC----CC
Confidence 1569999999999999998874 89999999999988765432211 011111111111 33
Q ss_pred CcceeHHHHHHHHHHhhcCCC--CCccE-EEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVPK--ASGRY-LLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~--~~g~~-~~~~~ 255 (322)
..+.+++|+|+++++++.... .+|.+ .+.++
T Consensus 209 ~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG 242 (254)
T 1zmt_A 209 QRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG 242 (254)
T ss_dssp SSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 457899999999999997643 45644 55544
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=190.12 Aligned_cols=222 Identities=18% Similarity=0.095 Sum_probs=150.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..... ....++...+.++.++++|++|+++++++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLR-VVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999998753321 1122221113568899999999998776543
Q ss_pred -CCCEEEEccc--Cc----------ccCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCC
Q 020747 79 -GCDGVFHTAS--PV----------IFLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 79 -~~d~vih~A~--~~----------~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
.+|++||+|| .. .....+.+...+++|+.++.++.+++.+. .+.++||++||..+..+..
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---- 157 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMF---- 157 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCCS----
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCCC----
Confidence 5799999994 21 11234456788999999998888776532 1457999999985543211
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ 219 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 219 (322)
...|+.||.+.+.+.+.++.+ +|+++++++||.|.++...................
T Consensus 158 -------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-- 216 (260)
T 2qq5_A 158 -------------------NVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQ-- 216 (260)
T ss_dssp -------------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------
T ss_pred -------------------CCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhHHHH--
Confidence 156999999999999999876 48999999999999886432111000000000000
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCCC---CCccEEEe
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVPK---ASGRYLLA 253 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~~---~~g~~~~~ 253 (322)
.......+..++|+|+++++++..+. .+|.++..
T Consensus 217 ~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~~ 253 (260)
T 2qq5_A 217 FKSAFSSAETTELSGKCVVALATDPNILSLSGKVLPS 253 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEEH
T ss_pred HHhhhccCCCHHHHHHHHHHHhcCcccccccceeech
Confidence 00012234689999999999998753 25655443
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=190.02 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=155.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh------hhhhhccCCCCcEEEEEccCCCccchHHhhC-
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT------EHLRELDGATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
+++|+++||||+|+||++++++|+++|++|++++|+..+... +...++...+.++.++++|++|+++++++++
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999999999999999999998754211 1111122224678999999999998887765
Q ss_pred ------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCC
Q 020747 79 ------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||.... ...+.+++.+++|+.++.++++++.+. .+.++||++||..++.+...
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~----- 158 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWW----- 158 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHH-----
T ss_pred HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCC-----
Confidence 68999999996432 233456788999999999999998653 24579999999855433100
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCC-ccCCCCCCCCCccHHHHHHHHcCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGT-VIGPFFQPILNFGAEVILNLINGDQS 220 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~-v~G~~~~~~~~~~~~~~~~~~~g~~~ 220 (322)
.....|+.||++.+.+.+.++.++ |+++++++||. +-.+.. +...+.
T Consensus 159 ---------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~------------~~~~~~-- 209 (274)
T 3e03_A 159 ---------------GAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI------------NMLPGV-- 209 (274)
T ss_dssp ---------------HHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------CC--
T ss_pred ---------------CCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh------------hhcccc--
Confidence 001569999999999999999875 89999999995 444321 111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
....+..++|+|+++++++... ..+|.++..+
T Consensus 210 --~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~~~ 243 (274)
T 3e03_A 210 --DAAACRRPEIMADAAHAVLTREAAGFHGQFLIDD 243 (274)
T ss_dssp --CGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEEHH
T ss_pred --cccccCCHHHHHHHHHHHhCccccccCCeEEEcC
Confidence 2334678999999999999764 3467666443
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=189.35 Aligned_cols=208 Identities=20% Similarity=0.183 Sum_probs=136.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhhC---C
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAVD---G 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~---~ 79 (322)
+++|+++||||+|+||++++++|++ |++|++++|+.... ..+.. ..++..+.+|+++... +.+.++ +
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHL-----AALAE-IEGVEPIESDIVKEVLEEGGVDKLKNLDH 75 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHH-----HHHHT-STTEEEEECCHHHHHHTSSSCGGGTTCSC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHH-----HHHHh-hcCCcceecccchHHHHHHHHHHHHhcCC
Confidence 4578999999999999999999987 99999999875322 22221 2458899999988733 223332 6
Q ss_pred CCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 CDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 ~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|+|||+||..... ..+.+...+++|+.++.++++++.+.+ ..++||++||..++.+.+.
T Consensus 76 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~------------- 142 (245)
T 3e9n_A 76 VDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHPG------------- 142 (245)
T ss_dssp CSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-----------------------
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCCC-------------
Confidence 89999999975331 223456789999999999999876531 1268999999866554322
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
...|+.||++.+.+++.++.+ .|+++++++||.+.++....... ...... ....+++
T Consensus 143 ---------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~----~~~~~~~ 202 (245)
T 3e9n_A 143 ---------NTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMD-------SQGTNF----RPEIYIE 202 (245)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------CCGGGSC
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhh-------hhhccc----ccccCCC
Confidence 156999999999999999987 48999999999999976432111 000111 3456889
Q ss_pred HHHHHHHHHHhhcCCCCCccEEEe
Q 020747 230 IRDVVYAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g~~~~~ 253 (322)
++|+|++++++++.+..+..+++.
T Consensus 203 p~dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 203 PKEIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCccceeeeE
Confidence 999999999999987655566543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=185.71 Aligned_cols=208 Identities=17% Similarity=0.138 Sum_probs=152.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccC--CCccchHHhhC---
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANL--LEEGSFDSAVD--- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl--~~~~~~~~~~~--- 78 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+..... +...++.. ...+..++.+|+ +|.++++++++
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLA-EVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHH-HHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999764332 11122211 124567777777 88888776655
Q ss_pred ----CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ----GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ----~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|+|||+||.... ...+.+.+.+++|+.++.++++++.+. .+.++||++||..+..+.+.
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------ 163 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRAN------ 163 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTT------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCC------
Confidence 78999999996422 233456789999999999999998542 24579999999866554332
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.||.+.+.+++.++.++ +++++.++||.+.++.. .......
T Consensus 164 ----------------~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~-----------~~~~~~~--- 213 (247)
T 3i1j_A 164 ----------------WGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMR-----------AQAYPDE--- 213 (247)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHH-----------HHHSTTS---
T ss_pred ----------------cchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccc-----------hhccccc---
Confidence 1569999999999999999873 79999999999877531 1111111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC--CCCccE
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP--KASGRY 250 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~ 250 (322)
....+..++|+|+++++++... ..+|..
T Consensus 214 -~~~~~~~p~dva~~~~~l~s~~~~~itG~~ 243 (247)
T 3i1j_A 214 -NPLNNPAPEDIMPVYLYLMGPDSTGINGQA 243 (247)
T ss_dssp -CGGGSCCGGGGTHHHHHHHSGGGTTCCSCE
T ss_pred -CccCCCCHHHHHHHHHHHhCchhccccCee
Confidence 2344567999999999999653 345543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=188.54 Aligned_cols=222 Identities=14% Similarity=0.069 Sum_probs=157.0
Q ss_pred CCCCCCCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||. .+++|+++|||| +|+||++++++|+++|++|++++|+..+...+...++ ..++.++++|++|+++++++++
T Consensus 1 Mm~-~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~ 76 (269)
T 2h7i_A 1 MTG-LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAG 76 (269)
T ss_dssp -CC-TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHH
T ss_pred Ccc-ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHH
Confidence 554 367799999999 9999999999999999999999987532111111111 3457889999999998887776
Q ss_pred ----------CCCEEEEcccCcc----------cCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccC
Q 020747 79 ----------GCDGVFHTASPVI----------FLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 79 ----------~~d~vih~A~~~~----------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~ 137 (322)
++|+|||+||... ....+.+...+++|+.++.++++++.+.+ ..++||++||... ++.
T Consensus 77 ~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~~~ 155 (269)
T 2h7i_A 77 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RAM 155 (269)
T ss_dssp HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SCC
T ss_pred HHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-ccc
Confidence 7899999999653 12234466789999999999999998753 1258999999733 222
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC----CCcc-H-
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI----LNFG-A- 208 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~----~~~~-~- 208 (322)
+. .+.|+.||.+.+.+.+.++.++ |+++++++||.+.++..... .... .
T Consensus 156 ~~----------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 213 (269)
T 2h7i_A 156 PA----------------------YNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGA 213 (269)
T ss_dssp TT----------------------THHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHH
T ss_pred Cc----------------------hHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHH
Confidence 11 1569999999999999998875 89999999999988642110 0000 0
Q ss_pred ---HHHHHHHcCCCCCCCCC-cceeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 209 ---EVILNLINGDQSFAFPY-IFVEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 209 ---~~~~~~~~g~~~~~~~~-~~i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
.....+.... +.. .+..++|+|+++++++... ..+|..+..
T Consensus 214 ~~~~~~~~~~~~~----p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~v 260 (269)
T 2h7i_A 214 QIQLLEEGWDQRA----PIGWNMKDATPVAKTVCALLSDWLPATTGDIIYA 260 (269)
T ss_dssp HHHHHHHHHHHHC----TTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEE
T ss_pred HHHHHHHhhhccC----CcccCCCCHHHHHHHHHHHhCchhccCcceEEEe
Confidence 0011111111 223 4778999999999999753 356755433
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=188.37 Aligned_cols=219 Identities=17% Similarity=0.082 Sum_probs=155.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHH---CCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQ---RGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
.+++|+++||||+|+||++++++|++ +|++|++++|+..... +...++.. .+.++.++++|++|+++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR-QLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH-HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHH-HHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 35678999999999999999999999 8999999999753321 11122211 13468899999999998876653
Q ss_pred --------CCC--EEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhcC-----CccEEEEecchhhhc
Q 020747 79 --------GCD--GVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKVH-----SIKRVVLTSSIGAML 135 (322)
Q Consensus 79 --------~~d--~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-----~~~~~i~~SS~~~~~ 135 (322)
++| +|||+||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..++.
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 358 99999997432 2234567899999999999999998753 246899999986654
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCC--ccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILN--FGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~ 212 (322)
+.+. ...|+.||.+.+.+.+.++.++ ++++++++||.+-++....... .......
T Consensus 162 ~~~~----------------------~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 219 (259)
T 1oaa_A 162 PYKG----------------------WGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp CCTT----------------------CHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred CCCC----------------------ccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHH
Confidence 3321 1569999999999999999886 5999999999987764211000 0001111
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC-CCCccE
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVP-KASGRY 250 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~-~~~g~~ 250 (322)
.+.... +...+.+++|+|+++++++... ..+|.+
T Consensus 220 ~~~~~~----p~~~~~~p~dvA~~v~~l~~~~~~itG~~ 254 (259)
T 1oaa_A 220 KLQKLK----SDGALVDCGTSAQKLLGLLQKDTFQSGAH 254 (259)
T ss_dssp HHHHHH----HTTCSBCHHHHHHHHHHHHHHCCSCTTEE
T ss_pred HHHHhh----hcCCcCCHHHHHHHHHHHHhhccccCCcE
Confidence 111100 2345789999999999998642 345544
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=191.15 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=149.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..... ....++.. ...++.++.+|++|+++++++++
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQ-KVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 104 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999754321 11111111 12368899999999998887765
Q ss_pred -CCCEEEEc-ccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHT-ASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~-A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|+|||+ ||.... ...+.+...+++|+.|+.++++++.+.+ +.++||++||..+..+.+.
T Consensus 105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------- 173 (286)
T 1xu9_A 105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPM----------- 173 (286)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTT-----------
T ss_pred CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCCC-----------
Confidence 78999999 554322 1123346789999999999999886641 2369999999865543221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
.+.|+.||.+.+.+++.++.++ ++++++++||.+.++... ....+. ...
T Consensus 174 -----------~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~-----------~~~~~~----~~~ 227 (286)
T 1xu9_A 174 -----------VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM-----------KAVSGI----VHM 227 (286)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHH-----------HHSCGG----GGG
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHH-----------Hhcccc----ccC
Confidence 1569999999999999988765 899999999998776421 111111 223
Q ss_pred cceeHHHHHHHHHHhhcCCC
Q 020747 226 IFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~ 245 (322)
.+++++|+|+.++.++..+.
T Consensus 228 ~~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 228 QAAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp GCBCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhcCC
Confidence 56789999999999998753
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=188.13 Aligned_cols=222 Identities=20% Similarity=0.215 Sum_probs=153.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhc---cCCCCcEEEEEccCCCccchHHhhCC---
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLREL---DGATERLHLFKANLLEEGSFDSAVDG--- 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 79 (322)
+|+|+||||+|+||++++++|+++|++|++++|+...... ..+... .....++..+.+|++|+++++++++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999999999988886544322 111111 11135689999999999999988874
Q ss_pred --CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 80 --CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 80 --~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
+|+|||+||.... ...+.+.+.+++|+.|+.++++++.+. .+.++||++||..++.+.+.
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~---------- 151 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF---------- 151 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTT----------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCC----------
Confidence 8999999986422 233456789999999999999997432 15679999999866554322
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH---cCccEEEEcCCCccCCCCCCCCCccH-----------HHHHHHH
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGA-----------EVILNLI 215 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~rp~~v~G~~~~~~~~~~~-----------~~~~~~~ 215 (322)
...|+.||.+.+.+.+.++.+ +|+++++|+||.|.++.......... ..+....
T Consensus 152 ------------~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (327)
T 1jtv_A 152 ------------NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYL 219 (327)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHH
Confidence 156999999999999999986 59999999999999886432111100 0000000
Q ss_pred cCCCCCCCCCc-ceeHHHHHHHHHHhhcCCCCCccEEEe
Q 020747 216 NGDQSFAFPYI-FVEIRDVVYAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 216 ~g~~~~~~~~~-~i~~~D~a~~~~~~~~~~~~~g~~~~~ 253 (322)
.... ..... .++++|+|+++++++..+.....|+.+
T Consensus 220 ~~~~--~~~~~~~~~pedvA~~i~~l~~~~~~~~~~~tg 256 (327)
T 1jtv_A 220 AHSK--QVFREAAQNPEEVAEVFLTALRAPKPTLRYFTT 256 (327)
T ss_dssp HHHH--HHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESC
T ss_pred HHHH--HhhhhcCCCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 0000 00011 257999999999999876544455543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=184.12 Aligned_cols=217 Identities=18% Similarity=0.163 Sum_probs=151.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCc-cchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEE-GSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~-~~~~~~~~----- 78 (322)
+++|+|+||||+|+||++++++|+++|++|++++|+..+.. +...++... ..++.++.+|++|+ +.++++++
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGH-EAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999864432 222333222 35799999999998 77666554
Q ss_pred --CCCEEEEcccCccc-----------------------------------CCCCCcchhhhHHHHHHHHHHHHHhhc--
Q 020747 79 --GCDGVFHTASPVIF-----------------------------------LSDNPQADIVDPAVMGTLNVLRSCAKV-- 119 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----------------------------------~~~~~~~~~~~~N~~~~~~l~~~~~~~-- 119 (322)
++|+|||+||.... ...+.+.+.+++|+.|+.++++++.+.
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 78999999997521 122234567999999999999998653
Q ss_pred -CCccEEEEecchhhhccCCCCCCC---------------------------CccccCCCCCCcccccccchhHHHHHHH
Q 020747 120 -HSIKRVVLTSSIGAMLLNETPMTP---------------------------DVVIDETWFSNPVLCKENKEWYSLAKTL 171 (322)
Q Consensus 120 -~~~~~~i~~SS~~~~~~~~~~~~~---------------------------~~~~~E~~~~~~~~~~~~~~~Y~~sK~~ 171 (322)
.+.++||++||..+..+....... .....+..++ .....|+.||++
T Consensus 169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~SK~a 242 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWP------SFGAAYTTSKAC 242 (311)
T ss_dssp TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCC------SSCHHHHHHHHH
T ss_pred cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCc------ccchhhHHHHHH
Confidence 245799999998666543210000 0000011111 112569999999
Q ss_pred HHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC--CCc
Q 020747 172 AEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPK--ASG 248 (322)
Q Consensus 172 ~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~--~~g 248 (322)
.+.+++.++.++ ++++++++||.|.++..... ....+++.++.++.++..+. .+|
T Consensus 243 ~~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~~----------------------~~~~~~~~a~~~~~~~~~~~~~~~g 300 (311)
T 3o26_A 243 LNAYTRVLANKIPKFQVNCVCPGLVKTEMNYGI----------------------GNYTAEEGAEHVVRIALFPDDGPSG 300 (311)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCSBCSGGGTTC----------------------CSBCHHHHHHHHHHHHTCCSSCCCS
T ss_pred HHHHHHHHHhhcCCceEEEecCCceecCCcCCC----------------------CCCCHHHHHHHHHHHHhCCCCCCCc
Confidence 999999999986 79999999999988753221 11358889999988876543 344
Q ss_pred cEE
Q 020747 249 RYL 251 (322)
Q Consensus 249 ~~~ 251 (322)
.|+
T Consensus 301 ~~~ 303 (311)
T 3o26_A 301 FFY 303 (311)
T ss_dssp CEE
T ss_pred eEe
Confidence 554
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=190.02 Aligned_cols=216 Identities=17% Similarity=0.112 Sum_probs=155.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++++++||||+|+||.++++.|+++|++|++++|+.... .+.+... ..++..+.+|++|+++++++++
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~---~l~~~~~-~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g 286 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAE---DLKRVAD-KVGGTALTLDVTADDAVDKITAHVTEHHG 286 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHH---HHHHHHH-HHTCEEEECCTTSTTHHHHHHHHHHHHST
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHH---HHHHHHH-HcCCeEEEEecCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999998864321 1111110 1135789999999999887765
Q ss_pred C-CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 G-CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~-~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
+ +|+|||+||.... .+.+.++..+++|+.|+.++.+++.+.+ +..+||++||..++.+....
T Consensus 287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~--------- 357 (454)
T 3u0b_A 287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQ--------- 357 (454)
T ss_dssp TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTC---------
T ss_pred CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCC---------
Confidence 3 8999999997533 3344567899999999999999998752 45699999999777665431
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.+|.+.+.+++.++.+. |+++++++||.|.++............... .. ....
T Consensus 358 -------------~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~---~~----~l~r 417 (454)
T 3u0b_A 358 -------------TNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRR---LN----SLFQ 417 (454)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHH---SB----TTSS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHh---hc----cccC
Confidence 569999999999999888764 899999999999987643211110011111 11 3345
Q ss_pred ceeHHHHHHHHHHhhcCC--CCCccE-EEec
Q 020747 227 FVEIRDVVYAHIRALEVP--KASGRY-LLAG 254 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~ 254 (322)
+..++|+++++++++... ..+|.. .+.|
T Consensus 418 ~g~pedvA~~v~fL~s~~a~~itG~~i~vdG 448 (454)
T 3u0b_A 418 GGQPVDVAELIAYFASPASNAVTGNTIRVCG 448 (454)
T ss_dssp CBCHHHHHHHHHHHHCGGGTTCCSCEEEESS
T ss_pred CCCHHHHHHHHHHHhCCccCCCCCcEEEECC
Confidence 678999999999998743 456754 4444
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=175.47 Aligned_cols=225 Identities=14% Similarity=0.054 Sum_probs=150.7
Q ss_pred CCCCcEEEEECCc--chhHHHHHHHHHHCCCeEEEEEeCCC---------CcChhhhhhccCCC--CcEEEEEcc-----
Q 020747 5 EGEEKVVCVTGAS--GFVASWLVKLLLQRGYTVKATVRDPN---------SPKTEHLRELDGAT--ERLHLFKAN----- 66 (322)
Q Consensus 5 ~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~--~~~~~~~~D----- 66 (322)
.+++|+++||||+ |+||++++++|+++|++|++++|++. ....+...++.... .....+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence 3567999999999 99999999999999999999986420 00001112221100 112333333
Q ss_pred ---CC----C--------ccchHHhhC-------CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHHHHHh
Q 020747 67 ---LL----E--------EGSFDSAVD-------GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVLRSCA 117 (322)
Q Consensus 67 ---l~----~--------~~~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~ 117 (322)
++ | +++++++++ ++|++||+||... ....+.+...+++|+.|+.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 32 2 566666554 6899999998532 12334567899999999999999998
Q ss_pred hcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH----cCccEEEEcC
Q 020747 118 KVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE----NGIDLVAIHP 192 (322)
Q Consensus 118 ~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~rp 192 (322)
+.+. .++||++||..+..+.+.. ...|+.||.+.+.+.+.++.+ +|+++++++|
T Consensus 165 ~~m~~~g~iv~isS~~~~~~~~~~---------------------~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~P 223 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERIIPGY---------------------GGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISA 223 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCCTTC---------------------TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHhccCceEEEEeccccccCCCCc---------------------chHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEec
Confidence 7532 2689999998665433210 024999999999999999876 4899999999
Q ss_pred CCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 193 GTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 193 ~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
|.|.++..... .........+.... +...+.+++|+|+++++++... ..+|.+ ++.++
T Consensus 224 G~v~T~~~~~~-~~~~~~~~~~~~~~----p~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG 284 (297)
T 1d7o_A 224 GPLGSRAAKAI-GFIDTMIEYSYNNA----PIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp CCCBCCCSSCC-SHHHHHHHHHHHHS----SSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cccccchhhhc-cccHHHHHHhhccC----CCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 99999875431 11122222222222 3345678999999999998753 345644 55543
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-23 Score=190.13 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=160.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcC--hhhhhhccCCCCcEEEEEccCCCccchHHhhCCC---
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPK--TEHLRELDGATERLHLFKANLLEEGSFDSAVDGC--- 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--- 80 (322)
.+++++||||+|+||++++++|+++|++ |++++|+..... .+...++...+.++.++.+|++|+++++++++++
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~ 304 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 304 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999995 888999764221 1222223333467899999999999999888765
Q ss_pred ---CEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 81 ---DGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 81 ---d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
|+|||+||.... ...+.+...+++|+.|+.++.+++.+. +.++||++||..++++....
T Consensus 305 g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~SS~a~~~g~~g~------------ 371 (486)
T 2fr1_A 305 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAPGL------------ 371 (486)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCTTC------------
T ss_pred CCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEcChHhcCCCCCC------------
Confidence 999999997543 233445678899999999999999887 78999999998777765431
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHH
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D 232 (322)
+.|+.+|...+.+...+. ..|+++++|+||.+.++++.... ....+.. ....+++++|
T Consensus 372 ----------~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~~~-----~~~~~~~------~g~~~i~~e~ 429 (486)
T 2fr1_A 372 ----------GGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAEGP-----VADRFRR------HGVIEMPPET 429 (486)
T ss_dssp ----------TTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC-----------------CTT------TTEECBCHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccchh-----HHHHHHh------cCCCCCCHHH
Confidence 459999999999988765 45999999999999886432110 0011100 3356789999
Q ss_pred HHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHH
Q 020747 233 VVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLR 267 (322)
Q Consensus 233 ~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~ 267 (322)
+++++..++..+.. .+.+.+ +.+..+...+.
T Consensus 430 ~a~~l~~~l~~~~~--~~~v~~--~d~~~~~~~~~ 460 (486)
T 2fr1_A 430 ACRALQNALDRAEV--CPIVID--VRWDRFLLAYT 460 (486)
T ss_dssp HHHHHHHHHHTTCS--SCEECE--ECHHHHHHHHT
T ss_pred HHHHHHHHHhCCCC--eEEEEe--CCHHHHhhhhc
Confidence 99999999987542 233322 45666655443
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-23 Score=179.91 Aligned_cols=208 Identities=18% Similarity=0.109 Sum_probs=147.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC------Cc-Ch-hhhhhccCCCCcEEEEEccCCCccchHHhh
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN------SP-KT-EHLRELDGATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~------~~-~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
+++|+++||||+|+||++++++|+++|++|++.+|... .. .. ....++..... ...+|+++.+++++++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~---~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG---KAVANYDSVEAGEKLV 83 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC---EEEEECCCGGGHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC---eEEEeCCCHHHHHHHH
Confidence 56799999999999999999999999999999876421 11 00 11122211112 2358999998776654
Q ss_pred C-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCC
Q 020747 78 D-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 78 ~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
+ ++|+|||+||.... ...+.++..+++|+.|+.++++++.+. .+.++||++||..+.++...
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~~--- 160 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFG--- 160 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCC---
Confidence 3 68999999996532 233456789999999999999998542 15579999999867765432
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ 219 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 219 (322)
...|+.||.+.+.+.+.++.+. |+++++++||.+ .+......+ .
T Consensus 161 -------------------~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~~--~----------- 207 (319)
T 1gz6_A 161 -------------------QANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVMP--E----------- 207 (319)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGSC--H-----------
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccCC--h-----------
Confidence 1569999999999999999874 899999999987 432111000 0
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcCCC-CCcc-EEEecC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEVPK-ASGR-YLLAGS 255 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~~~-~~g~-~~~~~~ 255 (322)
....+++++|+|+++++++..+. .+|. |.+.++
T Consensus 208 ---~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG 242 (319)
T 1gz6_A 208 ---DLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAG 242 (319)
T ss_dssp ---HHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETT
T ss_pred ---hhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCC
Confidence 11224579999999999987642 3564 455543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=188.45 Aligned_cols=226 Identities=18% Similarity=0.119 Sum_probs=165.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcC--hhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPK--TEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d 81 (322)
.+++||||||+|+||.+++++|+++|+ +|++++|+..... .+...++...+.++.++.+|++|++++++++++ +|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 468999999999999999999999999 5888888764321 123333444456799999999999999999875 99
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
+|||+||.... ...+.+...+++|+.|+.++.+++....+.++||++||..++++....
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g~---------------- 401 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQ---------------- 401 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTTB----------------
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCCC----------------
Confidence 99999997543 223345678899999999999998764357899999999777765431
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYA 236 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~ 236 (322)
..|+.+|...+.+++.+. ..|+++++++||.+...+.... ... ..+.. ....+++++|++++
T Consensus 402 ------~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~~--~~~---~~~~~------~g~~~l~~e~~a~~ 463 (511)
T 2z5l_A 402 ------GAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAAG--AGE---ESLSR------RGLRAMDPDAAVDA 463 (511)
T ss_dssp ------HHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCCC--HHH---HHHHH------HTBCCBCHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCccccc--ccH---HHHHh------cCCCCCCHHHHHHH
Confidence 569999999999998764 5599999999998843332211 111 11111 22456899999999
Q ss_pred HHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhC
Q 020747 237 HIRALEVPKASGRYLLAGSVAQHSDILKFLREHY 270 (322)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~ 270 (322)
+..++..+. ....+. ...|..+...+....
T Consensus 464 l~~al~~~~--~~v~v~--~~d~~~~~~~~~~~~ 493 (511)
T 2z5l_A 464 LLGAMGRND--VCVTVV--DVDWERFAPATNAIR 493 (511)
T ss_dssp HHHHHHHTC--SEEEEC--CBCHHHHHHHHHHHS
T ss_pred HHHHHhCCC--CEEEEE--eCCHHHHHhhhcccC
Confidence 999998753 223333 345777766665443
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-23 Score=173.20 Aligned_cols=209 Identities=17% Similarity=0.085 Sum_probs=143.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEE-E--eCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKAT-V--RDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
|+++||||+|+||++++++|+++|++|+++ + |+..... ....++ ... |+.|+++++++++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~-~~~~~~----~~~-----~~~~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQ-RFESEN----PGT-----IALAEQKPERLVDATLQHGE 71 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH-HHHHHS----TTE-----EECCCCCGGGHHHHHGGGSS
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHH-HHHHHh----CCC-----cccCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999999998 5 7653221 111222 111 2235555554443
Q ss_pred CCCEEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 GCDGVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ~~d~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|+|||+||.... ...+.++..+++|+.++.++++++.+. .+.++||++||..++.+.+..
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~------- 144 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYN------- 144 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTC-------
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCc-------
Confidence 68999999996432 122346678999999999999988643 245799999998665433221
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCC---CCCCCccHHHHHHHHc-CCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFF---QPILNFGAEVILNLIN-GDQS 220 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~---~~~~~~~~~~~~~~~~-g~~~ 220 (322)
..|+.||.+.+.+.+.++.++ |+++++++||.|.++.. ... .. ......+.. ..
T Consensus 145 ---------------~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~-~~~~~~~~~~~~-- 205 (244)
T 1zmo_A 145 ---------------PLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDW-EN-NPELRERVDRDV-- 205 (244)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHH-HH-CHHHHHHHHHHC--
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccc-cc-hHHHHHHHhcCC--
Confidence 459999999999999998874 89999999999988753 110 00 011112221 11
Q ss_pred CCCCCcceeHHHHHHHHHHhhcCCC--CCccE-EEecC
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEVPK--ASGRY-LLAGS 255 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~~~--~~g~~-~~~~~ 255 (322)
+...+..++|+|+++++++.... .+|.+ .+.|+
T Consensus 206 --p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 206 --PLGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp --TTCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred --CCCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 33457789999999999997642 45655 44443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=174.60 Aligned_cols=230 Identities=17% Similarity=0.041 Sum_probs=149.0
Q ss_pred CCCCCCCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCCC---------CcChhhhhhccCCC--CcEEEEEcc-
Q 020747 1 MMSGEGEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDPN---------SPKTEHLRELDGAT--ERLHLFKAN- 66 (322)
Q Consensus 1 mm~~~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~~~~--~~~~~~~~D- 66 (322)
||...+++|+++|||| +|+||++++++|+++|++|++++|++. ....+...++.... .....+.+|
T Consensus 2 M~~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (315)
T 2o2s_A 2 AFPIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDA 81 (315)
T ss_dssp --CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCT
T ss_pred CCcccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccc
Confidence 5554567899999999 899999999999999999999987420 00001111111100 012333333
Q ss_pred -----------CCC--------ccchHHhhC-------CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHH
Q 020747 67 -----------LLE--------EGSFDSAVD-------GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVL 113 (322)
Q Consensus 67 -----------l~~--------~~~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~ 113 (322)
++| +++++++++ ++|++||+||... ....+.+...+++|+.|+.+++
T Consensus 82 ~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 161 (315)
T 2o2s_A 82 AFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLL 161 (315)
T ss_dssp TCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred cccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHH
Confidence 332 556666554 6899999998542 1233456788999999999999
Q ss_pred HHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH----cCccEE
Q 020747 114 RSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE----NGIDLV 188 (322)
Q Consensus 114 ~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ 188 (322)
+++.+.+. .++||++||..+..+.+.. ...|+.||.+.+.+.+.++.+ +|++++
T Consensus 162 ~~~~~~m~~~g~Iv~isS~~~~~~~~~~---------------------~~~Y~asKaal~~l~~~la~el~~~~gIrvn 220 (315)
T 2o2s_A 162 QHFGPIMNEGGSAVTLSYLAAERVVPGY---------------------GGGMSSAKAALESDTRTLAWEAGQKYGVRVN 220 (315)
T ss_dssp HHHSTTEEEEEEEEEEEEGGGTSCCTTC---------------------CTTHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCEEEEEecccccccCCCc---------------------cHHHHHHHHHHHHHHHHHHHHhCcccCeEEE
Confidence 99987531 2689999998655433210 024999999999999998876 489999
Q ss_pred EEcCCCccCCCCCCCC----Ccc-HHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEecC
Q 020747 189 AIHPGTVIGPFFQPIL----NFG-AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGS 255 (322)
Q Consensus 189 ~~rp~~v~G~~~~~~~----~~~-~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~ 255 (322)
+|+||.|.++...... ... ......+.... +...+..++|+|+++++++... ..+|.++..++
T Consensus 221 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG 290 (315)
T 2o2s_A 221 AISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNA----PLRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDN 290 (315)
T ss_dssp EEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHS----SSCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred EEecccccchhhhhccccccchhHHHHHHHHhccC----CCCCCCCHHHHHHHHHHHhCchhccCcCCEEEECC
Confidence 9999999876421100 001 11111111111 3344678999999999999752 35676644433
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-22 Score=174.79 Aligned_cols=232 Identities=15% Similarity=0.022 Sum_probs=132.4
Q ss_pred CCCCCCCCcEEEEECC--cchhHHHHHHHHHHCCCeEEEEEeCC-----------CCcCh----------hhhhhccCCC
Q 020747 1 MMSGEGEEKVVCVTGA--SGFVASWLVKLLLQRGYTVKATVRDP-----------NSPKT----------EHLRELDGAT 57 (322)
Q Consensus 1 mm~~~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~----------~~~~~~~~~~ 57 (322)
||...+++|+++|||| +|+||++++++|+++|++|++++|++ ..... ....++...+
T Consensus 2 m~~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2ptg_A 2 PLPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKP 81 (319)
T ss_dssp CCCCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC-----------------------------
T ss_pred CcccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcc
Confidence 6665567899999999 89999999999999999999998642 11000 0001111000
Q ss_pred C---cEEEEEcc------------CCC--------ccchHHhhC-------CCCEEEEcccCcc-------cCCCCCcch
Q 020747 58 E---RLHLFKAN------------LLE--------EGSFDSAVD-------GCDGVFHTASPVI-------FLSDNPQAD 100 (322)
Q Consensus 58 ~---~~~~~~~D------------l~~--------~~~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~ 100 (322)
. ....+.+| ++| +++++++++ ++|++||+||... ....+.+..
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~ 161 (319)
T 2ptg_A 82 VDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLA 161 (319)
T ss_dssp ---CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHH
T ss_pred ccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHH
Confidence 0 02344443 333 446665554 6899999998531 123345678
Q ss_pred hhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHH
Q 020747 101 IVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179 (322)
Q Consensus 101 ~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~ 179 (322)
.+++|+.++.++++++.+.+. .++||++||..+..+.+.. ...|+.||++.+.+.+.+
T Consensus 162 ~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~---------------------~~~Y~asKaal~~l~~~l 220 (319)
T 2ptg_A 162 AVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGY---------------------GGGMSSAKAALESDCRTL 220 (319)
T ss_dssp HHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC---------------------------------------THHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccccCcc---------------------chhhHHHHHHHHHHHHHH
Confidence 899999999999999987532 2689999998555432210 024999999999999998
Q ss_pred HHH----cCccEEEEcCCCccCCCCCCCCCc-cHHHHHH----HHcCCCCCCCCCcceeHHHHHHHHHHhhcC--CCCCc
Q 020747 180 AKE----NGIDLVAIHPGTVIGPFFQPILNF-GAEVILN----LINGDQSFAFPYIFVEIRDVVYAHIRALEV--PKASG 248 (322)
Q Consensus 180 ~~~----~~~~~~~~rp~~v~G~~~~~~~~~-~~~~~~~----~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g 248 (322)
+.+ +|+++++|+||.|.++........ ...+... +.... +...+..++|+|+++++++.. ...+|
T Consensus 221 a~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~r~~~peevA~~v~~L~s~~~~~itG 296 (319)
T 2ptg_A 221 AFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANA----PLQKELESDDVGRAALFLLSPLARAVTG 296 (319)
T ss_dssp HHHHHHHHCCEEEEEEECCCC-----------------------------------CCCHHHHHHHHHHHTSGGGTTCCS
T ss_pred HHHhccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccC----CCCCCCCHHHHHHHHHHHhCcccCCccC
Confidence 876 489999999999988753321100 0000000 00101 334567899999999999975 34567
Q ss_pred cEEEecCCC
Q 020747 249 RYLLAGSVA 257 (322)
Q Consensus 249 ~~~~~~~~~ 257 (322)
.++..++..
T Consensus 297 ~~i~vdGG~ 305 (319)
T 2ptg_A 297 ATLYVDNGL 305 (319)
T ss_dssp CEEEESTTC
T ss_pred CEEEECCCc
Confidence 654443333
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=181.58 Aligned_cols=204 Identities=18% Similarity=0.120 Sum_probs=154.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhCC-----
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVDG----- 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 79 (322)
++++|||||+|+||.+++++|+++|+ +|++++|+..+... +...++...+.++.++.+|++|+++++++++.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999998 67888886433211 23333433456899999999999999988863
Q ss_pred -CCEEEEcccCc-cc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 -CDGVFHTASPV-IF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 -~d~vih~A~~~-~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|+|||+||.. .. ...+.+...+++|+.|+.++.+++.+. ..++||++||..++++....
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS~a~~~g~~g~------------ 385 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSSGAAVWGSGGQ------------ 385 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTTCTTC------------
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeChHhcCCCCCc------------
Confidence 69999999975 32 223345678999999999999999987 67899999999888766532
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHH
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRD 232 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D 232 (322)
..|+.+|...+.+.+.+. ..|++++.|.||.+.+++...... ....+.+ .....+.+++
T Consensus 386 ----------~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~~----~~~~l~~------~g~~~l~pe~ 444 (496)
T 3mje_A 386 ----------PGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDPE----VHDRLVR------QGVLAMEPEH 444 (496)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC----------CHHHHH------TTEEEECHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccChH----HHHHHHh------cCCCCCCHHH
Confidence 569999999999998765 459999999999988766432211 1111222 2244578999
Q ss_pred HHHHHHHhhcCCC
Q 020747 233 VVYAHIRALEVPK 245 (322)
Q Consensus 233 ~a~~~~~~~~~~~ 245 (322)
.++++..++..+.
T Consensus 445 ~~~~l~~~l~~~~ 457 (496)
T 3mje_A 445 ALGALDQMLENDD 457 (496)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998754
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=168.14 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=126.0
Q ss_pred CcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCC---------CCcCh--hhhhhccCCCCcEEEEEccCCCc--c-
Q 020747 8 EKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDP---------NSPKT--EHLRELDGATERLHLFKANLLEE--G- 71 (322)
Q Consensus 8 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~--~- 71 (322)
+|+++||||++ +||.+++++|+++|++|++.+|++ ..... ............+..+.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 58999999875 999999999999999999777653 11111 11111111224478889999887 6
Q ss_pred -----------------chHHhhC-------CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHHHHHhhcC
Q 020747 72 -----------------SFDSAVD-------GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVLRSCAKVH 120 (322)
Q Consensus 72 -----------------~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~ 120 (322)
+++++++ .+|++||+||... ....+.+...+++|+.|+.++++++.+.+
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6665554 5799999998531 12344577899999999999999998763
Q ss_pred C-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch-hHHHHHHHHHHHHHHHHHH----cCccEEEEcCCC
Q 020747 121 S-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE-WYSLAKTLAEEAAWKFAKE----NGIDLVAIHPGT 194 (322)
Q Consensus 121 ~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~~~~~~~~rp~~ 194 (322)
. -++||++||..+..+.+.. . .|+.||++.+.+.+.++.+ +|++++.+.||.
T Consensus 162 ~~~g~Iv~isS~~~~~~~~~~----------------------~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~ 219 (329)
T 3lt0_A 162 KPQSSIISLTYHASQKVVPGY----------------------GGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGP 219 (329)
T ss_dssp EEEEEEEEEECGGGTSCCTTC----------------------TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred hhCCeEEEEeCccccCCCCcc----------------------hHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecce
Confidence 2 1589999998665443321 2 4999999999999988876 489999999999
Q ss_pred ccCCC
Q 020747 195 VIGPF 199 (322)
Q Consensus 195 v~G~~ 199 (322)
|.++.
T Consensus 220 v~T~~ 224 (329)
T 3lt0_A 220 LKSRA 224 (329)
T ss_dssp CCCHH
T ss_pred eechh
Confidence 98874
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=177.94 Aligned_cols=224 Identities=15% Similarity=0.078 Sum_probs=158.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCe-EEEE-EeCCCC------------cChhhhhhccCCCCcEEEEEccCCCccc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYT-VKAT-VRDPNS------------PKTEHLRELDGATERLHLFKANLLEEGS 72 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~------------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (322)
++++++||||+|+||.+++++|+++|++ |+++ +|+..+ ...+...++...+.++.++.+|++|+++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 4689999999999999999999999998 5555 676422 1112333333335679999999999999
Q ss_pred hHHhhCC------CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCC----ccEEEEecchhhhccC
Q 020747 73 FDSAVDG------CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHS----IKRVVLTSSIGAMLLN 137 (322)
Q Consensus 73 ~~~~~~~------~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~----~~~~i~~SS~~~~~~~ 137 (322)
++++++. +|+|||+||.... ...+.+...+++|+.|+.++.+++...+. .++||++||..++.+.
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~ 409 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGG 409 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCC
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCC
Confidence 9988864 5999999997543 22334667899999999999999988731 6799999999887765
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcC
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLING 217 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g 217 (322)
... ..|+.+|...+.+..++. ..|++++.|.||.+-++.... ... ...+..
T Consensus 410 ~g~----------------------~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~~tgm~~~--~~~---~~~~~~- 460 (525)
T 3qp9_A 410 AGQ----------------------GAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPWEGSRVTE--GAT---GERLRR- 460 (525)
T ss_dssp TTC----------------------HHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCBTTSGGGS--SHH---HHHHHH-
T ss_pred CCC----------------------HHHHHHHHHHHHHHHHHH-hCCCCEEEEECCccccccccc--hhh---HHHHHh-
Confidence 432 569999999999876554 349999999999994332211 111 111111
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHH
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLRE 268 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~ 268 (322)
.....+.++++++++..++..+. ....+ ..+.|..+...+..
T Consensus 461 -----~g~~~l~pee~a~~l~~~l~~~~--~~v~v--~~~dw~~~~~~~~~ 502 (525)
T 3qp9_A 461 -----LGLRPLAPATALTALDTALGHGD--TAVTI--ADVDWSSFAPGFTT 502 (525)
T ss_dssp -----TTBCCBCHHHHHHHHHHHHHHTC--SEEEE--CCBCHHHHHHHHHS
T ss_pred -----cCCCCCCHHHHHHHHHHHHhCCC--CeEEE--EeCCHHHHHhhccc
Confidence 22355789999999999998753 12222 23456655555443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-22 Score=176.10 Aligned_cols=174 Identities=17% Similarity=0.105 Sum_probs=126.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDG 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (322)
.|||+||||+||||++++..|+++|+ +|+++++....... .....+.. ..+.++ +|+++..++.+++++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~--~~~~~~-~di~~~~~~~~a~~~ 80 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED--CAFPLL-AGLEATDDPKVAFKD 80 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT--TTCTTE-EEEEEESCHHHHTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhc--cccccc-CCeEeccChHHHhCC
Confidence 36899999999999999999999996 89888875311000 11111111 111223 688777788888999
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC-cc-EEEEecchhhhccCCCCCCCCcccc-CCC-CCCc
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IK-RVVLTSSIGAMLLNETPMTPDVVID-ETW-FSNP 155 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~-~~i~~SS~~~~~~~~~~~~~~~~~~-E~~-~~~~ 155 (322)
+|+|||+||..... ..++.++++.|+.+++++++++++. + ++ +++++|+..... .++. |.. ...|
T Consensus 81 ~D~Vih~Ag~~~~~-~~~~~~~~~~Nv~~t~~l~~a~~~~-~~~~~~vvv~snp~~~~---------~~~~~~~~~~~~p 149 (327)
T 1y7t_A 81 ADYALLVGAAPRKA-GMERRDLLQVNGKIFTEQGRALAEV-AKKDVKVLVVGNPANTN---------ALIAYKNAPGLNP 149 (327)
T ss_dssp CSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHH-SCTTCEEEECSSSHHHH---------HHHHHHTCTTSCG
T ss_pred CCEEEECCCcCCCC-CCCHHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEeCCchhhh---------HHHHHHHcCCCCh
Confidence 99999999976433 2445789999999999999999997 4 44 788888752111 1111 111 1222
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
. +.|+.+|..+|++...+++.+|++.+++||++||||...
T Consensus 150 ~------~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 150 R------NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp G------GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred h------heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 2 559999999999999999989999999999999998754
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=178.28 Aligned_cols=204 Identities=17% Similarity=0.091 Sum_probs=140.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC-------Cc-ChhhhhhccCCCCcEEEEEccCCCccchHHh
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN-------SP-KTEHLRELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
.+++|+++||||+|+||++++++|+++|++|++++|+.. .. ......++...... +.+|++|.++++++
T Consensus 16 ~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 16 RYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE---AVADYNSVIDGAKV 92 (613)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC---EEECCCCGGGHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe---EEEEeCCHHHHHHH
Confidence 367899999999999999999999999999999988221 11 11222222222222 34799999888887
Q ss_pred hC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCC
Q 020747 77 VD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 77 ~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~ 141 (322)
++ ++|++||+||.... ...+.+...+++|+.|+.++++++.+. .+.++||++||..+.++....
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~~- 171 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQ- 171 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCTTC-
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCC-
Confidence 76 47999999997533 234457789999999999999998542 245799999998777765431
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
..|+.||++.+.+.+.++.+. |++++++.||.+ .+....... .
T Consensus 172 ---------------------~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~~--~---------- 217 (613)
T 3oml_A 172 ---------------------VNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGILP--D---------- 217 (613)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCCC--H----------
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhccc--h----------
Confidence 569999999999999999875 899999999864 222111111 0
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC-CCCccE
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP-KASGRY 250 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~-~~~g~~ 250 (322)
.....+.++|+|+++++++... ..+|.+
T Consensus 218 ----~~~~~~~pedvA~~v~~L~s~~~~~tG~~ 246 (613)
T 3oml_A 218 ----ILFNELKPKLIAPVVAYLCHESCEDNGSY 246 (613)
T ss_dssp ----HHHTTCCGGGTHHHHHHTTSTTCCCCSCE
T ss_pred ----hhhhcCCHHHHHHHHHHhcCCCcCCCceE
Confidence 1122347999999999998764 235543
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=165.67 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=144.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccC-CCccch-HHh---hCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL-LEEGSF-DSA---VDG 79 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~~~~~~-~~~---~~~ 79 (322)
.+++|+++||||++.||++++++|+++|++|++.+|+.. .+...++...+.++..+.+|+ ++.+.+ +.+ +.+
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~---~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~ 395 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA---TKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT 395 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC---HHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccH---HHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence 356789999999999999999999999999998876321 122233322234577788898 554432 222 337
Q ss_pred CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|++||+||.... .+.+.++..+++|+.|+.++.+++.+.+ +.++||++||..+..+.+..
T Consensus 396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~----------- 464 (604)
T 2et6_A 396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQ----------- 464 (604)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTB-----------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCC-----------
Confidence 8999999996432 3344678899999999999999986642 44699999998777654321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.||++...+.+.++.+. |++++.|.||. ..+.... .... ...+..
T Consensus 465 -----------~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~-------~~~~---------~~~~~~ 516 (604)
T 2et6_A 465 -----------ANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLS-------IMRE---------QDKNLY 516 (604)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC-------------------------CCSS
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccc-------cCch---------hhccCC
Confidence 569999999999999999874 89999999983 3322110 0000 112345
Q ss_pred eHHHHHHHHHHhhcCCC-CCccE
Q 020747 229 EIRDVVYAHIRALEVPK-ASGRY 250 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~-~~g~~ 250 (322)
.++|+|.++++++.... .+|.+
T Consensus 517 ~pe~vA~~v~~L~s~~~~itG~~ 539 (604)
T 2et6_A 517 HADQVAPLLVYLGTDDVPVTGET 539 (604)
T ss_dssp CGGGTHHHHHHTTSTTCCCCSCE
T ss_pred CHHHHHHHHHHHhCCccCCCCcE
Confidence 79999999999986532 45644
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=167.25 Aligned_cols=228 Identities=18% Similarity=0.105 Sum_probs=153.4
Q ss_pred CCCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC--------CcChhhhhhccCCCCcEEEEEccCCCccc
Q 020747 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN--------SPKTEHLRELDGATERLHLFKANLLEEGS 72 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~ 72 (322)
|+...+++|+++||||++.||++++++|+++|++|++.+|+.. ....+...++...+.+. .+|++|.++
T Consensus 1 m~~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~ 77 (604)
T 2et6_A 1 MSPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLD 77 (604)
T ss_dssp -CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTC
T ss_pred CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHH
Confidence 4444467899999999999999999999999999999887641 11111222222112222 357777765
Q ss_pred hHHhhC-------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccC
Q 020747 73 FDSAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 73 ~~~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~ 137 (322)
++++++ ++|++||+||.... ...+.++..+++|+.|+.++.+++.+.+ +.++||++||..+.++.
T Consensus 78 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~ 157 (604)
T 2et6_A 78 GDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGN 157 (604)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC
Confidence 554433 68999999996432 3344678899999999999999886542 34699999998777654
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHH
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNL 214 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~ 214 (322)
+.. ..|+.||.+...+.+.++.+. |++++.|.|+ +..+....... .
T Consensus 158 ~~~----------------------~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~~--~------ 206 (604)
T 2et6_A 158 FGQ----------------------ANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIMP--P------ 206 (604)
T ss_dssp TTB----------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTSC--H------
T ss_pred CCc----------------------hHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccCC--h------
Confidence 421 569999999999999999874 8999999996 32221000000 0
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCC-CCCccE-EEec-------------------CCCCHHHHHHHHHHhC
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVP-KASGRY-LLAG-------------------SVAQHSDILKFLREHY 270 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~-~~~g~~-~~~~-------------------~~~~~~e~~~~i~~~~ 270 (322)
.......++|++.++++++... ..+|.. .+.+ ...+..++.+.+.+..
T Consensus 207 --------~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 275 (604)
T 2et6_A 207 --------PMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEIL 275 (604)
T ss_dssp --------HHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHT
T ss_pred --------hhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhh
Confidence 0112247999999999998764 234533 3322 2346778877776653
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=154.95 Aligned_cols=207 Identities=8% Similarity=-0.052 Sum_probs=144.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHH-CCCeEEEEEeCCCCcChh----------hhh-hccCCCCcEEEEEccCCCccchH
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQ-RGYTVKATVRDPNSPKTE----------HLR-ELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~----------~~~-~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
.+|+++||||++.||.++++.|++ +|++|++++|+....... ... .+...+.++..+.+|++|+++++
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~ 125 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQ 125 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 368999999999999999999999 999999999876543211 111 12222456888999999999888
Q ss_pred HhhC-------CCCEEEEcccCcc---------------------------------------cCCCCCcchhhhHHHHH
Q 020747 75 SAVD-------GCDGVFHTASPVI---------------------------------------FLSDNPQADIVDPAVMG 108 (322)
Q Consensus 75 ~~~~-------~~d~vih~A~~~~---------------------------------------~~~~~~~~~~~~~N~~~ 108 (322)
++++ ++|++||+||... +.+.+.++..+++|..+
T Consensus 126 ~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~~ 205 (405)
T 3zu3_A 126 LTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGE 205 (405)
T ss_dssp HHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhchh
Confidence 7665 5799999998631 11233466788888888
Q ss_pred HH-HHHHHHhhc-C--CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH--
Q 020747 109 TL-NVLRSCAKV-H--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-- 182 (322)
Q Consensus 109 ~~-~l~~~~~~~-~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-- 182 (322)
+. .+++++... + +..++|++||..+..+.+.. ....|+.||.+.+.+.+.++.+
T Consensus 206 ~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~--------------------~~~aY~AaKaal~~ltrsLA~Ela 265 (405)
T 3zu3_A 206 DWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIY--------------------WNGSIGAAKKDLDQKVLAIRESLA 265 (405)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTT--------------------TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCc--------------------cchHHHHHHHHHHHHHHHHHHHhC
Confidence 76 566665432 1 23589999998554433210 0045999999999999999987
Q ss_pred -c-CccEEEEcCCCccCCCCCCCCCccH---HHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC
Q 020747 183 -N-GIDLVAIHPGTVIGPFFQPILNFGA---EVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV 243 (322)
Q Consensus 183 -~-~~~~~~~rp~~v~G~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~ 243 (322)
+ |++++++.||.+..+.... .+..+ ..+.+.+ ..+-..+||++++.+++..
T Consensus 266 ~~~GIRVNaVaPG~i~T~~s~~-ip~~p~y~~~l~~~m---------kr~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 266 AHGGGDARVSVLKAVVSQASSA-IPMMPLYLSLLFKVM---------KEKGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp TTTSCEEEEEECCCCCCHHHHT-STTHHHHHHHHHHHH---------HHHTCCCCHHHHHHHHHHH
T ss_pred cccCeEEEEEEeCCCcCchhhc-CCCCcHHHHHHHHHH---------hcCCCcHHHHHHHHHHHhc
Confidence 4 8999999999998875322 11111 1122222 1222478999999999876
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-18 Score=173.79 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=143.6
Q ss_pred CCCcEEEEECCcch-hHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhh----ccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 6 GEEKVVCVTGASGF-VASWLVKLLLQRGYTVKATVRDPNSPKTEHLRE----LDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
+++|+++||||+|+ ||.++++.|+++|++|++++++......+...+ ....+.++.++.+|++|+++++++++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i 752 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 752 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence 56789999999999 999999999999999998854332211111111 22224578999999999998887653
Q ss_pred -----------CCCEEEEcccCcccC------C--CCCcchhhhHHHHHHHHHHHHHhhc--C---CccEEEEecchhhh
Q 020747 79 -----------GCDGVFHTASPVIFL------S--DNPQADIVDPAVMGTLNVLRSCAKV--H---SIKRVVLTSSIGAM 134 (322)
Q Consensus 79 -----------~~d~vih~A~~~~~~------~--~~~~~~~~~~N~~~~~~l~~~~~~~--~---~~~~~i~~SS~~~~ 134 (322)
.+|+|||+||..... . .+.+...+++|+.++.+++++++.. + +.++||++||..+.
T Consensus 753 ~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~ 832 (1887)
T 2uv8_A 753 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 832 (1887)
T ss_dssp HSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTC
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhc
Confidence 489999999964321 1 2346789999999999999988322 1 23689999998655
Q ss_pred ccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHH-HHHHHHHcC--ccEEEEcCCCccC-CCCCCCCCccHHH
Q 020747 135 LLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEA-AWKFAKENG--IDLVAIHPGTVIG-PFFQPILNFGAEV 210 (322)
Q Consensus 135 ~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~--~~~~~~rp~~v~G-~~~~~~~~~~~~~ 210 (322)
.+.. ..|+.||++.+.+ .+.++.+++ ++++.++||.|.| +.... .....
T Consensus 833 ~gg~------------------------~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~-~~~~~-- 885 (1887)
T 2uv8_A 833 FGGD------------------------GMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSA-NNIIA-- 885 (1887)
T ss_dssp SSCB------------------------TTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC------CCTTH--
T ss_pred cCCC------------------------chHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEeccccccccccc-chhHH--
Confidence 4311 3499999999998 666666543 9999999999984 43221 11111
Q ss_pred HHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC
Q 020747 211 ILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 211 ~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
...... +. .+..++|+|+++++++...
T Consensus 886 --~~~~~~----pl-r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 886 --EGIEKM----GV-RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp --HHHHTT----SC-CCEEHHHHHHHHHGGGSHH
T ss_pred --HHHHhc----CC-CCCCHHHHHHHHHHHhCCC
Confidence 111111 22 4458999999999999764
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-19 Score=176.40 Aligned_cols=205 Identities=14% Similarity=0.083 Sum_probs=142.4
Q ss_pred CCCcEEEEECCcch-hHHHHHHHHHHCCCeEEEEE-eCCCCcChhhhhhc----cCCCCcEEEEEccCCCccchHHhhC-
Q 020747 6 GEEKVVCVTGASGF-VASWLVKLLLQRGYTVKATV-RDPNSPKTEHLREL----DGATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
+++|+++||||+|+ ||+++++.|+++|++|++++ |+..... +...++ ...+.++.++.+|++|+++++++++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~le-e~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVT-DYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTT-THHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHH-HHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 56789999999998 99999999999999999885 4443322 222222 1124578999999999999887653
Q ss_pred ------------CCCEEEEcccCcccC------C--CCCcchhhhHHHHHHHHHHHHHh--hcC---CccEEEEecchhh
Q 020747 79 ------------GCDGVFHTASPVIFL------S--DNPQADIVDPAVMGTLNVLRSCA--KVH---SIKRVVLTSSIGA 133 (322)
Q Consensus 79 ------------~~d~vih~A~~~~~~------~--~~~~~~~~~~N~~~~~~l~~~~~--~~~---~~~~~i~~SS~~~ 133 (322)
.+|+|||+||..... . .+.+...+++|+.++.+++++++ ..+ +.++||++||..+
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 489999999964322 1 23457899999999999999883 221 2358999999866
Q ss_pred hccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHH-HHHHHHHc--CccEEEEcCCCccCCCCCCCCCccHHH
Q 020747 134 MLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEA-AWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFGAEV 210 (322)
Q Consensus 134 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~~~~ 210 (322)
..+.. ..|+.||++.+.+ .+.++++. +++++.|.||.|.|.........
T Consensus 633 ~~Gg~------------------------saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e~---- 684 (1688)
T 2pff_A 633 TFGGD------------------------GMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNI---- 684 (1688)
T ss_dssp TSSCB------------------------TTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTTT----
T ss_pred ccCCc------------------------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCchH----
Confidence 54311 4499999999998 44444433 38999999999985322111000
Q ss_pred HHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC
Q 020747 211 ILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 211 ~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
....... . +. .+..++|+|+++++++...
T Consensus 685 ~~~~l~~---i-pl-R~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 685 IAEGIEK---M-GV-RTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp CSTTTSS---S-SC-CCCCCCTTHHHHHHHTSTT
T ss_pred HHHHHHh---C-CC-CCCCHHHHHHHHHHHhCCC
Confidence 0000010 0 21 3448999999999999765
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=153.29 Aligned_cols=208 Identities=12% Similarity=-0.036 Sum_probs=142.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHH-CCCeEEEEEeCCCCcChh----------hh-hhccCCCCcEEEEEccCCCccchH
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQ-RGYTVKATVRDPNSPKTE----------HL-RELDGATERLHLFKANLLEEGSFD 74 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~----------~~-~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (322)
.+|++|||||++.||.++++.|++ +|++|++++|+....... .+ ..+...+.++..+++|++|+++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 368999999999999999999999 999999999876554311 01 222223456889999999998876
Q ss_pred HhhC--------CCCEEEEcccCc-------------c--------------------------cCCCCCcchhhhHHHH
Q 020747 75 SAVD--------GCDGVFHTASPV-------------I--------------------------FLSDNPQADIVDPAVM 107 (322)
Q Consensus 75 ~~~~--------~~d~vih~A~~~-------------~--------------------------~~~~~~~~~~~~~N~~ 107 (322)
++++ ++|++||+||.. . +...+.++..+++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 6553 579999999852 0 0122234556777777
Q ss_pred HHH-HHHHHHhhc-C--CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc
Q 020747 108 GTL-NVLRSCAKV-H--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183 (322)
Q Consensus 108 ~~~-~l~~~~~~~-~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~ 183 (322)
++. .+++++... + +..++|++||..+..+.+. + ....|+.||.+.+.+.+.++.+.
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~-----------------~---~~~aY~ASKaAl~~lTrsLA~El 279 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEITWPI-----------------Y---WHGALGKAKVDLDRTAQRLNARL 279 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHH-----------------H---TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCC-----------------c---cchHHHHHHHHHHHHHHHHHHHh
Confidence 765 666665432 1 2358999999855432210 0 01459999999999999999874
Q ss_pred ---CccEEEEcCCCccCCCCCCCCCccHH---HHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC
Q 020747 184 ---GIDLVAIHPGTVIGPFFQPILNFGAE---VILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 184 ---~~~~~~~rp~~v~G~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
|++++++.||.|..+..... +..+. .+...++ ..-..+||++++.+++...
T Consensus 280 a~~GIRVNaVaPG~i~T~~~~~i-p~~~~~~~~~~~~m~---------r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 280 AKHGGGANVAVLKSVVTQASAAI-PVMPLYISMVYKIMK---------EKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp HTTTCEEEEEEECCCCCTTGGGS-THHHHHHHHHHHHHH---------HTTCCCCHHHHHHHHHHHT
T ss_pred CccCEEEEEEEcCCCcChhhhcC-CCChHHHHHHHhhhc---------CCcChHHHHHHHHHHhcch
Confidence 89999999999998864321 21111 1111121 1224789999999998764
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-18 Score=164.68 Aligned_cols=205 Identities=17% Similarity=0.169 Sum_probs=153.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHH-HCCC-eEEEEEeCCCCcC--hhhhhhccCCCCcEEEEEccCCCccchHHhhCC---
Q 020747 7 EEKVVCVTGASGFVASWLVKLLL-QRGY-TVKATVRDPNSPK--TEHLRELDGATERLHLFKANLLEEGSFDSAVDG--- 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~-~~g~-~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--- 79 (322)
++++++||||+|.||.++++.|+ ++|. +|++++|+..... .+...++...+.++..+.+|++|+++++++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 46899999999999999999999 7998 5888888743222 133344444466899999999999999988763
Q ss_pred ---CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 80 ---CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 80 ---~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+|||+||...+ .+.+.++..+++|+.|+.++.+++... . +||++||.+++.+.+..
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~--l-~iV~~SS~ag~~g~~g~----------- 674 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD--V-ALVLFSSVSGVLGSGGQ----------- 674 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT--S-EEEEEEETHHHHTCSSC-----------
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC--C-EEEEEccHHhcCCCCCC-----------
Confidence 5999999997533 344567789999999999999998554 3 89999999888766542
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHH
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~ 231 (322)
..|+.+|...+.+.+++.. .|++++.|.||.+-+++..... .......+.+ .....+..+
T Consensus 675 -----------~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~~~~~--~~~~~~~~~~------~g~~~l~~~ 734 (795)
T 3slk_A 675 -----------GNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGMASTL--REAEQDRLAR------SGLLPISTE 734 (795)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCHHHHH--HHHHHHHHHH------TTBCCCCHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchhhccc--cHHHHHHHHh------cCCCCCCHH
Confidence 5699999998888877764 5999999999998765422110 0111112222 224456789
Q ss_pred HHHHHHHHhhcCCC
Q 020747 232 DVVYAHIRALEVPK 245 (322)
Q Consensus 232 D~a~~~~~~~~~~~ 245 (322)
+..+++..++..+.
T Consensus 735 e~~~~~~~~l~~~~ 748 (795)
T 3slk_A 735 EGLSQFDAACGGAH 748 (795)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887754
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=167.62 Aligned_cols=205 Identities=13% Similarity=0.048 Sum_probs=144.5
Q ss_pred CCCcEEEEECCcch-hHHHHHHHHHHCCCeEEEEEeCCCCcChhhh----hhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 6 GEEKVVCVTGASGF-VASWLVKLLLQRGYTVKATVRDPNSPKTEHL----RELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
+++|++|||||+|+ ||.++++.|+++|++|++++++......+.. .++...+.++.++.+|++|+++++++++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i 729 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI 729 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 56789999999999 9999999999999999988654322111111 2222234578999999999999887663
Q ss_pred ---------CCCEEEEcccCcccC---C-----CCCcchhhhHHHHHHHHHHHHHh--hcC---CccEEEEecchhhhcc
Q 020747 79 ---------GCDGVFHTASPVIFL---S-----DNPQADIVDPAVMGTLNVLRSCA--KVH---SIKRVVLTSSIGAMLL 136 (322)
Q Consensus 79 ---------~~d~vih~A~~~~~~---~-----~~~~~~~~~~N~~~~~~l~~~~~--~~~---~~~~~i~~SS~~~~~~ 136 (322)
.+|+|||+||..... . .+.+...+++|+.++.+++++++ ..+ +.++||++||..+..+
T Consensus 730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g 809 (1878)
T 2uv9_A 730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG 809 (1878)
T ss_dssp HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence 489999999965321 1 13467899999999999987732 221 2368999999866554
Q ss_pred CCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH-c--CccEEEEcCCCcc-CCCCCCCCCccHHHHH
Q 020747 137 NETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-N--GIDLVAIHPGTVI-GPFFQPILNFGAEVIL 212 (322)
Q Consensus 137 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--~~~~~~~rp~~v~-G~~~~~~~~~~~~~~~ 212 (322)
.. ..|+.||++.+.+++.+..+ . +++++.|.||.+. ++.... .....
T Consensus 810 g~------------------------~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~-----~~~~~ 860 (1878)
T 2uv9_A 810 ND------------------------GLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA-----NNLVA 860 (1878)
T ss_dssp CC------------------------SSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH-----HHHTH
T ss_pred Cc------------------------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc-----chhhH
Confidence 21 34999999999998776554 2 4999999999998 543221 11111
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
...... +. .+..++|+|+++++++...
T Consensus 861 ~~~~~~----pl-r~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 861 EGVEKL----GV-RTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp HHHHTT----TC-CCBCHHHHHHHHHHHHSHH
T ss_pred HHHHhc----CC-CCCCHHHHHHHHHHHhCCc
Confidence 222221 22 3448999999999998653
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=151.14 Aligned_cols=215 Identities=10% Similarity=-0.049 Sum_probs=144.3
Q ss_pred CCCcEEEEECCcchhHHH--HHHHHHHCCCeEEEEEeCCCCcC----------hhhhhh-ccCCCCcEEEEEccCCCccc
Q 020747 6 GEEKVVCVTGASGFVASW--LVKLLLQRGYTVKATVRDPNSPK----------TEHLRE-LDGATERLHLFKANLLEEGS 72 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~~-~~~~~~~~~~~~~Dl~~~~~ 72 (322)
..+|+++||||++.||.+ +++.|+++|++|++++|+..... .+.+.+ ....+.++..+++|++|+++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 347899999999999999 99999999999999999765432 111211 12224568899999999998
Q ss_pred hHHhhC-------CCCEEEEcccCcc---------------------------------------cCCCCCcchhhhHHH
Q 020747 73 FDSAVD-------GCDGVFHTASPVI---------------------------------------FLSDNPQADIVDPAV 106 (322)
Q Consensus 73 ~~~~~~-------~~d~vih~A~~~~---------------------------------------~~~~~~~~~~~~~N~ 106 (322)
++++++ ++|++||+||... +...+.+...+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 877665 4799999998630 012223445666676
Q ss_pred HHHH-HHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH
Q 020747 107 MGTL-NVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE 182 (322)
Q Consensus 107 ~~~~-~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~ 182 (322)
.+.. .+++++.... +..++|++||..+..+.+. . ....|+.||++.+.+.+.++.+
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~--------------~------~~~aY~ASKaAL~~ltrsLA~E 277 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKI--------------Y------REGTIGIAKKDLEDKAKLINEK 277 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTT--------------T------TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCc--------------c------ccHHHHHHHHHHHHHHHHHHHH
Confidence 6655 5556554321 2358999999854433221 0 0045999999999999999876
Q ss_pred ----cCccEEEEcCCCccCCCCCCCCCccH---HHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCccE
Q 020747 183 ----NGIDLVAIHPGTVIGPFFQPILNFGA---EVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRY 250 (322)
Q Consensus 183 ----~~~~~~~~rp~~v~G~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~ 250 (322)
+|++++++.||.|..+..... +..+ ..+.+.++. .-..+|+++++.+++.....+|.+
T Consensus 278 La~~~GIrVN~V~PG~v~T~~s~~i-p~~p~y~~~~~~~mk~---------~G~~E~v~e~~~~L~sd~~~~g~~ 342 (418)
T 4eue_A 278 LNRVIGGRAFVSVNKALVTKASAYI-PTFPLYAAILYKVMKE---------KNIHENCIMQIERMFSEKIYSNEK 342 (418)
T ss_dssp HHHHHSCEEEEEECCCCCCHHHHTS-TTHHHHHHHHHHHHHH---------TTCCCCHHHHHHHHHHHTTSSSSC
T ss_pred hCCccCeEEEEEECCcCcChhhhcC-CCCcHHHHHHHHHHhh---------cCChHHHHHHHHHHhhccccCCCc
Confidence 589999999999988743221 1111 111222211 123789999999999876555655
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=152.36 Aligned_cols=229 Identities=19% Similarity=0.147 Sum_probs=149.3
Q ss_pred CCCcEEEEECCcch-hHHHHHHHHHHCCCeEEEEEeCCCCcC----hhhhhhccCCCCcEEEEEccCCCccchHHhhC--
Q 020747 6 GEEKVVCVTGASGF-VASWLVKLLLQRGYTVKATVRDPNSPK----TEHLRELDGATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
+++|+++||||++. ||.++++.|+++|++|++.+|+..... .+...++...+.++..+.+|++|+++++++++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 67899999999999 999999999999999999998765411 12223333335678899999999998877643
Q ss_pred ---------CCCEEEEcccC----ccc------CCCCCcchh----hhHHHHHHHHHHHHHhhcC---Ccc---EEEE-e
Q 020747 79 ---------GCDGVFHTASP----VIF------LSDNPQADI----VDPAVMGTLNVLRSCAKVH---SIK---RVVL-T 128 (322)
Q Consensus 79 ---------~~d~vih~A~~----~~~------~~~~~~~~~----~~~N~~~~~~l~~~~~~~~---~~~---~~i~-~ 128 (322)
++|++||+||. ... .....+... +++|+.++..+++++.+.+ +.. .+|. .
T Consensus 2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D 2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence 47999999996 111 122234444 8899999999988876531 211 2222 2
Q ss_pred cchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH--c--CccEEEEcCCCccCCCCCCCC
Q 020747 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE--N--GIDLVAIHPGTVIGPFFQPIL 204 (322)
Q Consensus 129 SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~--~~~~~~~rp~~v~G~~~~~~~ 204 (322)
|+.....+.. ..|+.||.+.+.+.+.++.+ . +++++.+.||.|-+.......
T Consensus 2294 ss~~g~~g~~------------------------~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~ 2349 (3089)
T 3zen_D 2294 SPNRGMFGGD------------------------GAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQN 2349 (3089)
T ss_dssp CSSTTSCSSC------------------------SSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTT
T ss_pred CcccccCCCc------------------------hHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccc
Confidence 2221111110 34999999999999999998 3 689999999999854322111
Q ss_pred CccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCC---CCc--cE-EEecC----CCCHHHHHHHHH
Q 020747 205 NFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPK---ASG--RY-LLAGS----VAQHSDILKFLR 267 (322)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~---~~g--~~-~~~~~----~~~~~e~~~~i~ 267 (322)
.... ...... .. ....++|+|.++++++.... .++ .+ .++|+ ...+.++...++
T Consensus 2350 ~~~~----~~~~~~----~~-r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2350 DAIV----SAVEEA----GV-TTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp TTTH----HHHGGG----SC-BCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred hhHH----HHHHhc----CC-CCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 1111 111111 11 22389999999999987431 122 22 22232 357888877653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=154.74 Aligned_cols=168 Identities=21% Similarity=0.179 Sum_probs=124.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+|+++||||+|.||.++++.|+++|++ |++++|+..+... +...++...+.++..+.+|++|.++++++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999997 7777887654321 2223332234578899999999998887665
Q ss_pred -CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 -GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 -~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
.+|+|||+||... ..+.+.+...+++|+.|+.++.+++...+ ..++||++||..+..+.+..
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g~----------- 2031 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQ----------- 2031 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTTC-----------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCCc-----------
Confidence 5799999999642 24456788999999999999988887642 24699999999777665431
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIG 197 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G 197 (322)
..|+.+|.+.+.+.+....+ |++...+..+.+-+
T Consensus 2032 -----------~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2032 -----------ANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGD 2065 (2512)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCT
T ss_pred -----------HHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 56999999999999877655 99998888877643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-12 Score=93.77 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=76.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++++|+|+|+ |++|+++++.|.+.| ++|++++|++... ..+. ..++..+.+|+++.+++.++++++|+|||
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~-----~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAAL-----AVLN--RMGVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHH-----HHHH--TTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHH-----HHHH--hCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 3479999999 999999999999999 9999999875322 2221 23567889999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+++.. ....+++++.+. ++++|...++.
T Consensus 76 ~~~~~-----------------~~~~~~~~~~~~-g~~~~~~~~~~ 103 (118)
T 3ic5_A 76 AAPFF-----------------LTPIIAKAAKAA-GAHYFDLTEDV 103 (118)
T ss_dssp CSCGG-----------------GHHHHHHHHHHT-TCEEECCCSCH
T ss_pred CCCch-----------------hhHHHHHHHHHh-CCCEEEecCcH
Confidence 98531 135788888887 77665544443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-12 Score=111.84 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=114.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeC----CCCcChhhhhhccCCCCcEEEEEccCCCccchHHh
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRD----PNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
.+||+||||+||||++++..|+..|+ +|.++++. ..+.. .....+......+ ..|+....++.++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~-g~~~dl~~~~~~~---~~~i~~~~~~~~a 80 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQ-GVMMEIDDCAFPL---LAGMTAHADPMTA 80 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHH-HHHHHHHTTTCTT---EEEEEEESSHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccch-hhHHHHhhhcccc---cCcEEEecCcHHH
Confidence 47999999999999999999999885 78888775 21111 1111111100011 2466556778889
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhccCCCCCCCCccccCCCCCCc
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAMLLNETPMTPDVVIDETWFSNP 155 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~ 155 (322)
++++|+|||+||..... .....++...|+.+++++++++.+..+.+ +||++|.-..+-. ....+.++.-|
T Consensus 81 l~~aD~Vi~~ag~~~~~-g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t--------~~~~~~~~~~p 151 (329)
T 1b8p_A 81 FKDADVALLVGARPRGP-GMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNA--------YIAMKSAPSLP 151 (329)
T ss_dssp TTTCSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH--------HHHHHTCTTSC
T ss_pred hCCCCEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHH--------HHHHHHcCCCC
Confidence 99999999999965432 22345788999999999999999983244 8999987321100 00000000000
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCC
Q 020747 156 VLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPF 199 (322)
Q Consensus 156 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~ 199 (322)
. . ..|+.++....++...+++..|++..-++...|+|..
T Consensus 152 ~---~--~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 152 A---K--NFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp G---G--GEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred H---H--HEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 0 0 2377788878888888888888877777777778843
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=105.35 Aligned_cols=116 Identities=14% Similarity=0.040 Sum_probs=82.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhCCCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+.|||+||||+||+|+.++..|+++| ++|+++++++. ......+... ..++.. +.+..+++++++++|+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~---~~~~~dL~~~~~~~~v~~----~~~t~d~~~al~gaDv 79 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA---PGVTADISHMDTGAVVRG----FLGQQQLEAALTGMDL 79 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH---HHHHHHHHTSCSSCEEEE----EESHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc---HhHHHHhhcccccceEEE----EeCCCCHHHHcCCCCE
Confidence 34799999999999999999999999 88999887653 1111111110 112222 2233467778999999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
|||+||...... .....+...|+.+++++++++.+. +.+.+|+++|-
T Consensus 80 Vi~~ag~~~~~g-~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SN 126 (326)
T 1smk_A 80 IIVPAGVPRKPG-MTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISN 126 (326)
T ss_dssp EEECCCCCCCSS-CCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCS
T ss_pred EEEcCCcCCCCC-CCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECC
Confidence 999999643322 233578999999999999999998 66777777763
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=99.40 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=99.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEe--CCCCcCh--hhhhhc-cCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVR--DPNSPKT--EHLREL-DGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~--~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
|||+||||+||+|++++..|+.+|. ++.++++ +...... ..+... ...+..+.+... .+++.++++++|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~----~d~l~~al~gaD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVE----SDENLRIIDESD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEE----ETTCGGGGTTCS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeC----CcchHHHhCCCC
Confidence 4799999999999999999999885 5666776 3211100 001111 111112222221 123566789999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
+|||+||...... .....+++.|+.+++++++++++. + +++|+++|--.- ... .....+.. .++.
T Consensus 77 ~Vi~~Ag~~~~~g-~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SNPv~-~~t-----~~~~k~~~-~p~~----- 141 (313)
T 1hye_A 77 VVIITSGVPRKEG-MSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITNPVD-VMT-----YKALVDSK-FERN----- 141 (313)
T ss_dssp EEEECCSCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSSSHH-HHH-----HHHHHHHC-CCTT-----
T ss_pred EEEECCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecCcHH-HHH-----HHHHHhhC-cChh-----
Confidence 9999999653322 233578999999999999999998 6 767777663110 000 00000000 0010
Q ss_pred chhHHH-HHHHHHHHHHHHHHHcCccEEEEcCCCccCC
Q 020747 162 KEWYSL-AKTLAEEAAWKFAKENGIDLVAIHPGTVIGP 198 (322)
Q Consensus 162 ~~~Y~~-sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~ 198 (322)
..+|. +.....++...+++..|++..-++. .++|.
T Consensus 142 -rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 142 -QVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGE 177 (313)
T ss_dssp -SEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred -cEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence 22555 5555667777777777776555554 55663
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-09 Score=95.10 Aligned_cols=173 Identities=14% Similarity=0.037 Sum_probs=111.1
Q ss_pred CcEEEEECCcchhHHHHHHHHH-HCCCeEEEEEeCCCCcChh-----------hhhhccCCCCcEEEEEccCCCccchHH
Q 020747 8 EKVVCVTGASGFVASWLVKLLL-QRGYTVKATVRDPNSPKTE-----------HLRELDGATERLHLFKANLLEEGSFDS 75 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 75 (322)
.|++|||||++.||.+.+..|+ +.|..|+++.+........ ..+.....+.+...+++|+++++.+++
T Consensus 50 pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~~ 129 (401)
T 4ggo_A 50 PKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIKAQ 129 (401)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHHHH
Confidence 5899999999999999999998 6799999998865443210 111222235678999999999998887
Q ss_pred hhC-------CCCEEEEcccCcccC----------CCCC-------------c--------chhhhHHHHHHHHH-----
Q 020747 76 AVD-------GCDGVFHTASPVIFL----------SDNP-------------Q--------ADIVDPAVMGTLNV----- 112 (322)
Q Consensus 76 ~~~-------~~d~vih~A~~~~~~----------~~~~-------------~--------~~~~~~N~~~~~~l----- 112 (322)
+++ ++|++||++|..... .-.+ . ...-+.++.+|..+
T Consensus 130 vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg~s~ 209 (401)
T 4ggo_A 130 VIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMGGED 209 (401)
T ss_dssp HHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHhhhH
Confidence 776 579999999954210 0000 0 00112234444432
Q ss_pred ----HHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-C
Q 020747 113 ----LRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-G 184 (322)
Q Consensus 113 ----~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~ 184 (322)
..+.... ..-.++|-.|+..+.--. |.| ....+|.+|+..|..++.++.+. +
T Consensus 210 ~s~w~~al~~a~lla~G~siva~SYiGse~t~-----------------P~Y---~~G~mG~AKaaLEa~~r~La~eL~~ 269 (401)
T 4ggo_A 210 WERWIKQLSKEGLLEEGCITLAYSYIGPEATQ-----------------ALY---RKGTIGKAKEHLEATAHRLNKENPS 269 (401)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEECCCCGGGH-----------------HHH---TTSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhhcccCCceEEEEeccCcceee-----------------cCC---CccHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222222 012467777775221000 000 00248999999999999999886 6
Q ss_pred ccEEEEcCCCccCCCC
Q 020747 185 IDLVAIHPGTVIGPFF 200 (322)
Q Consensus 185 ~~~~~~rp~~v~G~~~ 200 (322)
+++.++-++.+.....
T Consensus 270 ~~a~v~v~~a~vT~As 285 (401)
T 4ggo_A 270 IRAFVSVNKGLVTRAS 285 (401)
T ss_dssp EEEEEEECCCCCCTTG
T ss_pred CcEEEEEcCccccchh
Confidence 7888888888877653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8e-11 Score=102.32 Aligned_cols=114 Identities=16% Similarity=0.020 Sum_probs=76.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEe--CCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVR--DPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|||+||||+|++|++++..|+.+|+ ++.++++ ....... ..+.........+.... + + .++++++|+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv 73 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDV 73 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCE
Confidence 4899999999999999999999885 5777776 3211100 00011000112223322 2 2 345889999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
|||+|+....... ....++..|+.+++++++++++. +.+.+|+++|-
T Consensus 74 Vi~~ag~~~~~g~-~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 74 VVITAGIPRQPGQ-TRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp EEECCCCCCCTTC-CHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred EEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 9999996533222 33578899999999999999998 67777777764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-10 Score=99.62 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++|+++||||+|++|+++++.|++.|++|++++|+..+.. +...++.. ..++..+.+|++++++++++++++|+|||
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~-~l~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~DvlVn 194 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQ-AAADSVNK-RFKVNVTAAETADDASRAEAVKGAHFVFT 194 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHH-HHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHH-HHHHHHHh-cCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence 46789999999999999999999999999999998753321 11111111 01356778999999999999999999999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+|+.
T Consensus 195 ~ag~ 198 (287)
T 1lu9_A 195 AGAI 198 (287)
T ss_dssp CCCT
T ss_pred CCCc
Confidence 9974
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-09 Score=95.79 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++++|+|+| +|++|+++++.|++.|++|++.+|+..+ ...+......+..+.+|++|+++++++++++|+|||+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~-----a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~ 75 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLES-----AKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 75 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHH-----HHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHH-----HHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence 358999998 8999999999999999999999987532 2222211234778899999999999999999999999
Q ss_pred ccCcccCCCCCcchhhh--H-------HHHHHHHHHHHHhhcCCcc
Q 020747 87 ASPVIFLSDNPQADIVD--P-------AVMGTLNVLRSCAKVHSIK 123 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~--~-------N~~~~~~l~~~~~~~~~~~ 123 (322)
++...... -....++ . ....+.++++++++. |++
T Consensus 76 a~~~~~~~--i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv~ 118 (450)
T 1ff9_A 76 IPYTFHAT--VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GIT 118 (450)
T ss_dssp CC--CHHH--HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TCE
T ss_pred CccccchH--HHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CCe
Confidence 98532100 0000001 0 123577888888887 653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-08 Score=76.74 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=71.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vi 84 (322)
+++++|+|+|+ |.+|+.+++.|.+.|++|++++|++.. ...+.. .....+.+|.++++.++++ ++++|+||
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~-----~~~~~~--~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEK-----VNAYAS--YATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHH-----HHTTTT--TCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHH--hCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 34578999997 999999999999999999999886422 222221 1235678999988777765 67899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
++++. + .+.|. .+.+.+++. +++++|..++.
T Consensus 76 ~~~~~-------~----~~~~~----~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 76 VAIGA-------N----IQAST----LTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp ECCCS-------C----HHHHH----HHHHHHHHT-TCSEEEEECCS
T ss_pred ECCCC-------c----hHHHH----HHHHHHHHc-CCCeEEEEeCC
Confidence 98753 1 12232 355566665 66777766654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.9e-08 Score=83.45 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=79.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
|||.|+||+|++|+.++..|++.| .+|.++++++ . ......+... ..++..+.+ ..+++.+++++|+||
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~-~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~~aDvVv 73 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--T-PGVAADLSHIETRATVKGYLG----PEQLPDCLKGCDVVV 73 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--H-HHHHHHHTTSSSSCEEEEEES----GGGHHHHHTTCSEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--c-HHHHHHHhccCcCceEEEecC----CCCHHHHhCCCCEEE
Confidence 479999999999999999999988 7899999876 1 1111122111 112222211 135677889999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++||........ ..++...|+..++.+++.+.+...-.++|++|-
T Consensus 74 i~ag~~~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 74 IPAGVPRKPGMT-RDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp ECCSCCCCTTCC-GGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred ECCCcCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 999865432223 356789999999999999998733347777654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=91.04 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=73.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC---CeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhCC--CCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG---YTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVDG--CDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~--~d~ 82 (322)
++|+|+|| |+||+++++.|++.| .+|++.+|+..+... ...++.. ...++..+.+|++|.+++++++++ +|+
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~-la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQE-IAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHH-HHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHH-HHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 68999998 999999999999998 389999987644321 1111111 113578899999999999999987 999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|||+|++.. ...++++|.+. ++ +++-+++
T Consensus 80 Vin~ag~~~-----------------~~~v~~a~l~~-g~-~vvD~a~ 108 (405)
T 4ina_A 80 VLNIALPYQ-----------------DLTIMEACLRT-GV-PYLDTAN 108 (405)
T ss_dssp EEECSCGGG-----------------HHHHHHHHHHH-TC-CEEESSC
T ss_pred EEECCCccc-----------------ChHHHHHHHHh-CC-CEEEecC
Confidence 999997421 13677778776 64 3444443
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-08 Score=86.33 Aligned_cols=116 Identities=19% Similarity=0.074 Sum_probs=77.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--e-----EEEEEeCCCC-cChhhhhhccC-CCCcEEEEEccCCCccchHHhhCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--T-----VKATVRDPNS-PKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVDG 79 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~~-~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (322)
+||+||||+|+||++++..|+..|. + +.++++.+.. .......++.. ..+... ++.-.....+.+++
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~~~d 79 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK----DVIATDKEEIAFKD 79 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE----EEEEESCHHHHTTT
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC----CEEEcCCcHHHhCC
Confidence 6899999999999999999998874 4 7788775321 00111111110 011111 22223345667889
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc--EEEEecc
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK--RVVLTSS 130 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~i~~SS 130 (322)
+|+|||+||..... ..+..++++.|+..++++++++++. +.+ +++.+|-
T Consensus 80 aDvVvitAg~prkp-G~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvsN 130 (333)
T 5mdh_A 80 LDVAILVGSMPRRD-GMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVGN 130 (333)
T ss_dssp CSEEEECCSCCCCT-TCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECSS
T ss_pred CCEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCC
Confidence 99999999864322 2344688999999999999999998 544 5777775
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-08 Score=75.94 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=57.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 85 (322)
++++|+|+|+ |.+|+++++.|.++|++|+++++++.. .+.+.. ..+..+.+|.++++.++++ ++++|+||.
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~-----~~~~~~--~~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEK-----IELLED--EGFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHH-----HHHHHH--TTCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHH-----HHHHHH--CCCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 3478999997 999999999999999999999987532 222211 2367889999999888876 568999997
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+.+
T Consensus 77 ~~~ 79 (141)
T 3llv_A 77 TGS 79 (141)
T ss_dssp CCS
T ss_pred ecC
Confidence 653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=72.03 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=67.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
+|+|+|+|+ |++|+++++.|.+.|++|++++|++... +.+... ..+..+.+|.++++.+.+. ++++|+||++
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~--~~~~~~----~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDIC--KKASAE----IDALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHH----CSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH--HHHHHh----cCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 478999986 9999999999999999999999865322 112110 1356788999888777654 6789999998
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
... + +.|. .+.+.++.. +.+++|..+
T Consensus 77 ~~~-------~-----~~~~----~~~~~~~~~-~~~~ii~~~ 102 (140)
T 1lss_A 77 TGK-------E-----EVNL----MSSLLAKSY-GINKTIARI 102 (140)
T ss_dssp CSC-------H-----HHHH----HHHHHHHHT-TCCCEEEEC
T ss_pred eCC-------c-----hHHH----HHHHHHHHc-CCCEEEEEe
Confidence 631 1 2232 445556665 666766543
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.3e-08 Score=79.35 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc
Q 020747 7 EEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70 (322)
Q Consensus 7 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (322)
++|+|||||| +|.+|.+++++|+++|++|+++.|+.+.... ....+..+ |+...
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~--------~~~~~~~~--~v~s~ 71 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE--------PHPNLSIR--EITNT 71 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC--------CCTTEEEE--ECCSH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc--------CCCCeEEE--EHhHH
Confidence 4689999999 9999999999999999999999987532110 01234443 34333
Q ss_pred c----chHHhhCCCCEEEEcccCc
Q 020747 71 G----SFDSAVDGCDGVFHTASPV 90 (322)
Q Consensus 71 ~----~~~~~~~~~d~vih~A~~~ 90 (322)
+ .+.+.+.++|++||+||..
T Consensus 72 ~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 72 KDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp HHHHHHHHHHGGGCSEEEECSBCC
T ss_pred HHHHHHHHHhcCCCCEEEEcCccc
Confidence 2 2334455799999999964
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=77.44 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCCCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC
Q 020747 5 EGEEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68 (322)
Q Consensus 5 ~~~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (322)
.+++|+|+|||| +|.+|.+++++|+++|++|++++++..-. . ...+. ..|++
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~-~---------~~g~~--~~dv~ 72 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP-T---------PPFVK--RVDVM 72 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-C---------CTTEE--EEECC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc-c---------CCCCe--EEccC
Confidence 356899999999 69999999999999999999988764211 0 11222 46777
Q ss_pred CccchHH----hhCCCCEEEEcccCc
Q 020747 69 EEGSFDS----AVDGCDGVFHTASPV 90 (322)
Q Consensus 69 ~~~~~~~----~~~~~d~vih~A~~~ 90 (322)
+.+++.+ .+.++|++||+||..
T Consensus 73 ~~~~~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 73 TALEMEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred cHHHHHHHHHHhcCCCCEEEECCccc
Confidence 7554433 344789999999964
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.3e-07 Score=68.73 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=57.9
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCC
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGC 80 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 80 (322)
|+....+++|+|+|+ |.+|+.+++.|.+.|++|++++|++... ..+.. ......+.+|.++++.+.++ ++++
T Consensus 13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~-----~~~~~-~~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAF-----HRLNS-EFSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp ----CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGG-----GGSCT-TCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred hhcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-----HHHHh-cCCCcEEEecCCCHHHHHHcCcccC
Confidence 444556789999995 9999999999999999999999876432 22210 12345678898887767665 6789
Q ss_pred CEEEEccc
Q 020747 81 DGVFHTAS 88 (322)
Q Consensus 81 d~vih~A~ 88 (322)
|+||.+.+
T Consensus 86 d~Vi~~~~ 93 (155)
T 2g1u_A 86 DMVFAFTN 93 (155)
T ss_dssp SEEEECSS
T ss_pred CEEEEEeC
Confidence 99998764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=73.16 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=58.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.++|+|+|+ |.+|+++++.|.+.|++|+++++++... .+.+.... ...+..+.+|.++++.++++ ++++|+||-+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~-~~~~~~~~--~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDD-IKQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHH-HHHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHH-HHHHHHhh--cCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 478999995 9999999999999999999999864210 01222111 13478899999999988876 8899999966
Q ss_pred c
Q 020747 87 A 87 (322)
Q Consensus 87 A 87 (322)
.
T Consensus 79 ~ 79 (153)
T 1id1_A 79 S 79 (153)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=82.51 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+.|||+|.|| |++|+.+++.|.+ .++|.+.+|+... ++.+. .....+..|+.|.+++.++++++|+||++
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~-----~~~~~---~~~~~~~~d~~d~~~l~~~~~~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNEN-----LEKVK---EFATPLKVDASNFDKLVEVMKEFELVIGA 84 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHH-----HHHHT---TTSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHH-----HHHHh---ccCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence 3578999998 9999999999865 5899988886532 22222 34577889999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
+++.. -..++++|.+. | .++|=+|
T Consensus 85 ~p~~~-----------------~~~v~~~~~~~-g-~~yvD~s 108 (365)
T 3abi_A 85 LPGFL-----------------GFKSIKAAIKS-K-VDMVDVS 108 (365)
T ss_dssp CCGGG-----------------HHHHHHHHHHH-T-CEEEECC
T ss_pred cCCcc-----------------cchHHHHHHhc-C-cceEeee
Confidence 86421 12678888887 6 4666655
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.9e-08 Score=87.83 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++++|+|+|+ |++|+++++.|++. |++|++.+|+.++. +.+... .++..+.+|+.|.+++.++++++|+||
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka--~~la~~----~~~~~~~~D~~d~~~l~~~l~~~DvVI 93 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANA--QALAKP----SGSKAISLDVTDDSALDKVLADNDVVI 93 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHH--HHHHGG----GTCEEEECCTTCHHHHHHHHHTSSEEE
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHH--HHHHHh----cCCcEEEEecCCHHHHHHHHcCCCEEE
Confidence 45689999997 99999999999998 78999999875432 112111 235677899999988999999999999
Q ss_pred EcccCc
Q 020747 85 HTASPV 90 (322)
Q Consensus 85 h~A~~~ 90 (322)
|+++..
T Consensus 94 n~tp~~ 99 (467)
T 2axq_A 94 SLIPYT 99 (467)
T ss_dssp ECSCGG
T ss_pred ECCchh
Confidence 998753
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=80.80 Aligned_cols=77 Identities=25% Similarity=0.303 Sum_probs=45.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHH-CCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQ-RGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
++++||.|+|++|.+|+.+++.+.+ .|++++++ +++.+........++.... ..++...++++.+++++|+|
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~------~~~v~~~~dl~~~l~~~DvV 76 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG------KTGVTVQSSLDAVKDDFDVF 76 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS------CCSCCEESCSTTTTTSCSEE
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC------cCCceecCCHHHHhcCCCEE
Confidence 4557999999999999999999885 57888755 4433221111111111000 01222223445566688999
Q ss_pred EEccc
Q 020747 84 FHTAS 88 (322)
Q Consensus 84 ih~A~ 88 (322)
|+++.
T Consensus 77 IDft~ 81 (273)
T 1dih_A 77 IDFTR 81 (273)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 98875
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-07 Score=81.66 Aligned_cols=117 Identities=9% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChh--hhhhccCCCCcEEEEEccCCCccchHHhhCCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTE--HLRELDGATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
.|.++||.|+|++|++|+.++..|+..| .+|.++++........ .+........ ++.-..+..+.++++
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~-------~i~~t~d~~~al~dA 77 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL-------NLTFTSDIKEALTDA 77 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTC-------CCEEESCHHHHHTTE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCC-------ceEEcCCHHHHhCCC
Confidence 4557899999999999999999999998 4899988754322110 0111110011 121123556778999
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccE--EEEecc
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR--VVLTSS 130 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~i~~SS 130 (322)
|+||++||..... .....++++.|+...+.+.+.+.+. +.+. ++.+|-
T Consensus 78 DvVvitaG~p~kp-G~~R~dLl~~N~~I~~~i~~~i~~~-~p~a~~vlvvsN 127 (343)
T 3fi9_A 78 KYIVSSGGAPRKE-GMTREDLLKGNAEIAAQLGKDIKSY-CPDCKHVIIIFN 127 (343)
T ss_dssp EEEEECCC--------CHHHHHHHHHHHHHHHHHHHHHH-CTTCCEEEECSS
T ss_pred CEEEEccCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-ccCcEEEEEecC
Confidence 9999999864222 2334678899999999999999987 4433 556654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.3e-06 Score=70.79 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=75.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChh--hhhhc-cCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTE--HLREL-DGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.++|.|+|+ |++|+.++..|++.|+ +|.++++++...... .+... ......+.....| + +.++++|+
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~----~a~~~aDv 76 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y----EDCKDADI 76 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G----GGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H----HHhCCCCE
Confidence 479999995 9999999999999986 899998864322110 01111 1111233433332 2 36789999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||.+||..... .....++++.|+.....+++.+.+...-..++.+|-
T Consensus 77 Vvi~ag~p~kp-G~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 77 VCICAGANQKP-GETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp EEECCSCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEEecccCCCC-CccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 99999864222 233457889999999999999998733335666654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.18 E-value=2e-06 Score=70.86 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=56.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~A 87 (322)
|+|+|+|+ |.+|+++++.|.+.|++|+++++++... +.+.. ..++..+.+|.++++.++++ ++++|+||-+.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~-----~~l~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELC-----EEFAK-KLKATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHH-----HHHHH-HSSSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-----HHHHH-HcCCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 47999995 9999999999999999999999875332 22111 12367899999999988876 78899998554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=7e-06 Score=65.55 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=57.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh--hCCCCEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA--VDGCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~~~d~v 83 (322)
.+++|+|+| .|.+|+.+++.|.+. |++|+++++++... +.+.+ ..+..+.+|.++++.+.++ ++++|+|
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~--~~~~~-----~g~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAA--QQHRS-----EGRNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHH--HHHHH-----TTCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHH--HHHHH-----CCCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 356899998 699999999999999 99999999876332 11221 2356788999998878777 7889999
Q ss_pred EEcc
Q 020747 84 FHTA 87 (322)
Q Consensus 84 ih~A 87 (322)
|.+.
T Consensus 110 i~~~ 113 (183)
T 3c85_A 110 LLAM 113 (183)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9765
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=63.86 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=56.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.++|+|+|+ |.+|+.+++.|.+.|++|+++++++... +.+.. ..+..+.+|.++++.++++ ++++|+||-+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~-----~~~~~--~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRV-----DELRE--RGVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHH-----HHHHH--TTCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHH-----HHHHH--cCCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 368999995 9999999999999999999999976332 22221 3467899999999888765 5688999866
Q ss_pred c
Q 020747 87 A 87 (322)
Q Consensus 87 A 87 (322)
.
T Consensus 79 ~ 79 (140)
T 3fwz_A 79 I 79 (140)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=4e-06 Score=67.83 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=63.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh---hC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA---VD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~d 81 (322)
++++|+||||+|.||.++++.+...|++|++++|++... +...++ +.. ...|.++.+..+.+ .. ++|
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~--~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR--EMLSRL---GVE---YVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH--HHHHTT---CCS---EEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHc---CCC---EEeeCCcHHHHHHHHHHhCCCCCe
Confidence 468999999999999999999999999999998865322 122221 111 12466665443333 22 589
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+||+++|. .. ....++.+++. +++|.+++.
T Consensus 110 ~vi~~~g~----------~~-------~~~~~~~l~~~---G~~v~~g~~ 139 (198)
T 1pqw_A 110 VVLNSLAG----------EA-------IQRGVQILAPG---GRFIELGKK 139 (198)
T ss_dssp EEEECCCT----------HH-------HHHHHHTEEEE---EEEEECSCG
T ss_pred EEEECCch----------HH-------HHHHHHHhccC---CEEEEEcCC
Confidence 99999862 01 22344444432 589999886
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.7e-06 Score=70.89 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=65.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChh--hhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTE--HLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+++|.|+|+ |++|+.++..|+..|. ++.++++.+...... .+.........+....+| .+.++++|+|
T Consensus 9 ~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~~~aDiV 80 (326)
T 3vku_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YSDAKDADLV 80 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HHHhcCCCEE
Confidence 579999995 9999999999999986 898988854322110 011111001223333222 2357899999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|++||..... .....++++.|+.-.+.+.+.+.+...-..++.+|-
T Consensus 81 vi~ag~~~kp-G~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 81 VITAGAPQKP-GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp EECCCCC-----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred EECCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 9999864322 223357788999999999999998733335666553
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=5.4e-05 Score=65.90 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChh--hhhhc---cCCCCcEEEEEccCCCccchHHhhCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTE--HLREL---DGATERLHLFKANLLEEGSFDSAVDG 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (322)
|++++|.|+|+ |.+|+.++..|+..|+ +|.++++++...... .+... .....++.. .. |+ +.+++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~---d~----~a~~~ 75 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AN---DY----AAIEG 75 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ES---SG----GGGTT
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eC---CH----HHHCC
Confidence 45679999997 9999999999999998 999999877543211 11110 001122221 12 22 46789
Q ss_pred CCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 80 CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 80 ~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+|+||.+||..... .....+++..|+.-.+.+++.+.+...-..++.+|-
T Consensus 76 aDiVIiaag~p~k~-G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 76 ADVVIVTAGVPRKP-GMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CSEEEECCSCCCC------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCEEEEccCcCCCC-CCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 99999999854322 123356788899999999999998733235666664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-05 Score=65.91 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=70.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccC------CCCcEEEEEccCCCccchHHhhCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDG------ATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
++|.|+|| |++|+.++..|+..|+ +|.++++++...... ...+.. ...++... . | . +.++++|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~-~~dl~~~~~~~~~~~~i~~t-~---d---~-~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGK-ALDLYEASPIEGFDVRVTGT-N---N---Y-ADTANSD 72 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHH-HHHHHTTHHHHTCCCCEEEE-S---C---G-GGGTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHH-HHhHHHhHhhcCCCeEEEEC-C---C---H-HHHCCCC
Confidence 68999998 9999999999999997 888888765432111 111111 01122211 1 2 3 3578999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+||.+++....... ....+...|+.....+.+.+.+. +.+.+|.+.|
T Consensus 73 ~Vi~a~g~p~~~g~-~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t 119 (309)
T 1ur5_A 73 VIVVTSGAPRKPGM-SREDLIKVNADITRACISQAAPL-SPNAVIIMVN 119 (309)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECC
T ss_pred EEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcC
Confidence 99999986432211 22456788999999999999987 4565555544
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-05 Score=66.82 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=75.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-C--CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-G--YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|||.|+||+|++|+.++..|.++ + .++.++++.+ ... ....++............ .+ ....+.++++|+||-
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~-G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTP-GVAVDLSHIPTAVKIKGF-SG--EDATPALEGADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THH-HHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch-hHHHHhhCCCCCceEEEe-cC--CCcHHHhCCCCEEEE
Confidence 47999999999999999999875 5 5788888865 221 111122111111222111 01 123457889999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
.||..... .....++++.|+.-.+.+.+.+.+...-..++.+|-
T Consensus 76 ~ag~~rkp-G~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 76 SAGVARKP-GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp CCSCSCCT-TCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred eCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99864322 234468899999999999999998733335666654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=8.4e-05 Score=65.06 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=73.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh--hhhhhc-c--CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT--EHLREL-D--GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--~~~~~~-~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|+|.|+|| |.+|+.++..|++.|+ +|.+.++++..... ..+... . ....++.. ..++++.++++|+
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~~ea~~~aDi 81 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-------EYSYEAALTGADC 81 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-------ECSHHHHHTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-------eCCHHHHhCCCCE
Confidence 68999997 9999999999999998 99888887643322 011110 0 11112221 1345557899999
Q ss_pred EEEcccCcccCCCC----CcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDN----PQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~----~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||-+++........ ........|+.-.+.+.+.+.+. ....++.+.|
T Consensus 82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t 132 (331)
T 1pzg_A 82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 132 (331)
T ss_dssp EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEc
Confidence 99998754322110 23466788999999999999987 3444443333
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.3e-05 Score=64.71 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=76.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccC------CCCcEEEEEccCCCccchHHhhC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDG------ATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
|++++|.|+| +|.+|+.++..|+..|. +|.++++++...... ...+.. ...++.. .. |+ +.++
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~-a~dL~~~~~~~~~~~~v~~-t~---d~----~a~~ 72 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGK-ALDLLQTCPIEGVDFKVRG-TN---DY----KDLE 72 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-HHHHHTTHHHHTCCCCEEE-ES---CG----GGGT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHH-HHHHHhhhhhcCCCcEEEE-cC---CH----HHHC
Confidence 4457999999 59999999999999988 999999876543211 111110 1112221 11 22 4678
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++|+||.+||..... .....+++..|+...+.+++.+.+...-..++.+|-
T Consensus 73 ~aDvVIi~ag~p~k~-G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 73 NSDVVIVTAGVPRKP-GMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp TCSEEEECCSCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCEEEEcCCcCCCC-CCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999999999864322 223457788999999999999998733235666653
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-05 Score=65.38 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=70.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccC---CCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDG---ATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.+||.|+|+ |++|..++..|+..|. +|.+++.++.+.... ...+.. ....+++. . .+ .+.++++|+
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~-~~dl~~~~~~~~~~~i~-~--~~----~~a~~~aDv 77 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGE-AMDINHGLPFMGQMSLY-A--GD----YSDVKDCDV 77 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHH-HHHHTTSCCCTTCEEEC-----C----GGGGTTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHH-HHHHHHhHHhcCCeEEE-E--CC----HHHhCCCCE
Confidence 468999997 9999999999999997 899999876544321 111111 11223222 1 12 335789999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEe
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~ 128 (322)
||.+++...... ....++...|+.....+++.+.+...-..+|.+
T Consensus 78 Vii~~g~p~k~g-~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 78 IVVTAGANRKPG-ETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp EEECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred EEEcCCCCCCCC-cCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 999998643221 223467889999999999999987332344444
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.5e-06 Score=68.96 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=55.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.++|+|+|+ |.+|+.+++.|.+.|+ |+++++++.. ...+. .++..+.+|.++++.++++ ++++|.||.+
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~-----~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVR-----KKVLR---SGANFVHGDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGH-----HHHHH---TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHH-----HHHHh---cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence 468999996 9999999999999999 9999876532 22222 2378899999999988877 8899999966
Q ss_pred c
Q 020747 87 A 87 (322)
Q Consensus 87 A 87 (322)
.
T Consensus 79 ~ 79 (234)
T 2aef_A 79 L 79 (234)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.8e-05 Score=65.46 Aligned_cols=114 Identities=22% Similarity=0.169 Sum_probs=75.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC--CCcChhh--hhh---ccCCCCcEEEEEccCCCccchHHhhC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP--NSPKTEH--LRE---LDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~--~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
+.++|.|+|+ |.+|+.++..|++.|+ +|.++++++ ....... +.. ......++.. . +|+ +.++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~--t--~d~----~a~~ 77 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG--T--SDY----ADTA 77 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE--E--SCG----GGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE--c--CCH----HHhC
Confidence 3579999996 9999999999999999 999998873 1111100 000 0001112221 1 122 3678
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++|+||-+||..... .....++++.|+...+.+.+.+.+...-..++.+|-
T Consensus 78 ~aDvVIiaag~p~kp-g~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 78 DSDVVVITAGIARKP-GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp TCSEEEECCSCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 999999999864332 233467889999999999999998733335666664
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.8e-05 Score=64.82 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=75.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhcc-CCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LRELD-GATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|+ |.+|+.++..|++.|+ +|.+.++++....... +.... ........... +| .+.++++|+|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~aDiV 73 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGSEII 73 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCCCEE
Confidence 47999998 9999999999999997 8999998764321101 11110 01111122111 12 3477899999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|.+||..... .....++.+.|+.-.+.+.+.+.+...-..++.+|-
T Consensus 74 Viaag~~~kp-G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 74 VVTAGLARKP-GMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EECCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999864322 223457889999999999999999733345666664
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=1e-05 Score=72.08 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|+|+|+ |.||+.+++.|...|++|++++|++.+. +...+.. +.. +.+|..+.++++++++++|+||+
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~--~~~~~~~--g~~---~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRL--QYLDDVF--GGR---VITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHT--TTS---EEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHH--HHHHHhc--Cce---EEEecCCHHHHHHHHhCCCEEEE
Confidence 34689999998 9999999999999999999999875332 1122111 112 44577777888888899999999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+++.
T Consensus 236 ~~g~ 239 (369)
T 2eez_A 236 AVLV 239 (369)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9875
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.86 E-value=9e-05 Score=64.62 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=76.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
...++|.|+|+ |.+|+.++..|+.+|. +|.+++++........ +............+.. .|++ .++++|
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----~~~~aD 89 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----VTANSK 89 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----GGTTEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----HhCCCC
Confidence 34579999997 9999999999999996 8888887643221110 1111000111122212 1332 478899
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+||.+||..... .....++++.|+.-.+.+.+.+.+...-..++.+|-
T Consensus 90 iVvi~aG~~~kp-G~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 90 LVIITAGARQQE-GESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp EEEECCSCCCCT-TCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEccCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999864332 234468899999999999999998733346666664
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.5e-06 Score=69.81 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=48.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|+|+|+||+|++|+++++.|++.|++|++.+|++... +.+.+.. ...+. ..|+. ..+++++++++|+||++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~--~~~~~~~--~~~~~--~~~~~-~~~~~~~~~~~D~Vi~~~~ 73 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKA--EAKAAEY--RRIAG--DASIT-GMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHH--HHHHHHH--HHHHS--SCCEE-EEEHHHHHHHCSEEEECSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHh--ccccc--cCCCC-hhhHHHHHhcCCEEEEeCC
Confidence 4799999999999999999999999999999875332 1111100 00000 02222 2456667788999998863
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=68.38 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 81 (322)
.+++|+||||+|.||..+++.+...|++|++++|+..+. +..+++ +.. ...|.++.+++.+.+. ++|
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~--~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI--AYLKQI---GFD---AAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHT---TCS---EEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHhc---CCc---EEEecCCHHHHHHHHHHHhCCCCe
Confidence 468999999999999999999999999999998865322 222222 111 2347776444443332 589
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||+++|
T Consensus 217 ~vi~~~g 223 (333)
T 1v3u_A 217 CYFDNVG 223 (333)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999987
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=63.97 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=72.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChh--hhhh-ccCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTE--HLRE-LDGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
+.+||.|+|| |.+|+.++..|+..| .+|.++++++...... .+.. .......+.... | + .+.++++|
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~aD 76 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDAD 76 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCCC
Confidence 4479999998 999999999999988 4788888764322110 0111 111112223322 2 2 34578999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
+||..|+...... .....+...|+.....+.+.+.+...-..+|.+|
T Consensus 77 vVvi~ag~~~~~g-~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 77 LVVICAGAAQKPG-ETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp EEEECCCCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEECCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999998643322 2234677889999999999998873333455544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.7e-05 Score=67.92 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=53.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d 81 (322)
++++|+|+||+|.||.++++.+...|++|++++|++.+. +..+++. .. ...|+++.+++.+.++ ++|
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~--~~~~~~g---~~---~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE--ELFRSIG---GE---VFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH--HHHHHTT---CC---EEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH--HHHHHcC---Cc---eEEecCccHhHHHHHHHHhCCCCC
Confidence 468999999999999999999999999999999876433 2233321 11 2247775555554443 689
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||+++|
T Consensus 241 ~vi~~~g 247 (347)
T 2hcy_A 241 GVINVSV 247 (347)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 9999986
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=63.01 Aligned_cols=174 Identities=17% Similarity=0.109 Sum_probs=99.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-------eEEEEEeCCCCcChhhh-hhc--cCCCCcEEEEEccCCCccchHH
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-------TVKATVRDPNSPKTEHL-REL--DGATERLHLFKANLLEEGSFDS 75 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~-~~~--~~~~~~~~~~~~Dl~~~~~~~~ 75 (322)
|+.-||.|+||+|.||+.|+..|.+... ++..++..+.....+.. .++ .........+.+ .+...
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-----~~~~~ 96 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-----ADPRV 96 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-----SCHHH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-----CChHH
Confidence 3345999999999999999999988642 57777764321110100 011 111111222222 23456
Q ss_pred hhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhh---h-ccCCCCCCCCccccCC
Q 020747 76 AVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGA---M-LLNETPMTPDVVIDET 150 (322)
Q Consensus 76 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~---~-~~~~~~~~~~~~~~E~ 150 (322)
.++++|+||-.||..... .....++++.|..-.+.+.+.+.+..... .++.+|--.- + .-... .
T Consensus 97 a~~~advVvi~aG~prkp-GmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~----------~ 165 (345)
T 4h7p_A 97 AFDGVAIAIMCGAFPRKA-GMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSA----------Q 165 (345)
T ss_dssp HTTTCSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHT----------T
T ss_pred HhCCCCEEEECCCCCCCC-CCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHc----------c
Confidence 789999999999865332 23346889999999999999998852223 4555553210 0 00000 0
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~ 201 (322)
..+++. ..-+.+.+-.-++-..++++.|+...-++-..|.|....
T Consensus 166 g~~~~r------~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 166 GKLNPR------HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp TCSCGG------GEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred CCCCcc------eeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 001111 112334444456666666777887777766667776544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=67.26 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=56.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-hhh-hhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-EHL-RELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.++++++|+|+ |.+|++++..|.+.|. +|++..|+.+.... +.+ .++... ........++.+.+++.+.+.++|+
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~-~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK-TDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh-cCCceEEeccchHHHHHhhhcCCCE
Confidence 46789999996 8999999999999998 89999998432111 111 111110 1123334566666667778889999
Q ss_pred EEEcccC
Q 020747 83 VFHTASP 89 (322)
Q Consensus 83 vih~A~~ 89 (322)
|||+...
T Consensus 230 IINaTp~ 236 (315)
T 3tnl_A 230 FTNATGV 236 (315)
T ss_dssp EEECSST
T ss_pred EEECccC
Confidence 9988753
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.80 E-value=9.8e-05 Score=63.98 Aligned_cols=114 Identities=13% Similarity=0.054 Sum_probs=72.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhc-cCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LREL-DGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|+|.|+|+ |.+|+.++..|++.|. +|.++++++....... +... ............ .++ +.++++|+|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~--~~~----~a~~~aDvV 73 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT--NDY----GPTEDSDVC 73 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE--SSS----GGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC--CCH----HHhCCCCEE
Confidence 47999996 9999999999999886 8999998774422111 1110 000111222211 122 367889999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|.+||..... .....++++.|+.-.+.+.+.+.+...-..++.+|-
T Consensus 74 ii~ag~~~kp-G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 74 IITAGLPRSP-GMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EECCCC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EECCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 9999864322 223467889999999999999998733335666654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.79 E-value=7.2e-05 Score=65.86 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=58.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-----C-eEEEEEeCCCCcChhhhhhccCC--C-CcEEEEEccCCCccchHHh
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-----Y-TVKATVRDPNSPKTEHLRELDGA--T-ERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dl~~~~~~~~~ 76 (322)
|++++|+|.||||++|+.|++.|.+++ + +++++.++.+... .+...... . ..+.+ .|+ + ...
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk--~~~~~~~~l~~~~~~~~--~~~-~----~~~ 77 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGS--TLGEHHPHLTPLAHRVV--EPT-E----AAV 77 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTS--BGGGTCTTCGGGTTCBC--EEC-C----HHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCC--chhhhcccccccceeee--ccC-C----HHH
Confidence 345799999999999999999999987 3 7777765432211 11111000 0 01111 121 1 223
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchh
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG 132 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~ 132 (322)
++++|+||.+.+... +..++..+ +. |+ ++|-.|+..
T Consensus 78 ~~~~DvVf~alg~~~-----------------s~~~~~~~-~~-G~-~vIDlSa~~ 113 (352)
T 2nqt_A 78 LGGHDAVFLALPHGH-----------------SAVLAQQL-SP-ET-LIIDCGADF 113 (352)
T ss_dssp HTTCSEEEECCTTSC-----------------CHHHHHHS-CT-TS-EEEECSSTT
T ss_pred hcCCCEEEECCCCcc-----------------hHHHHHHH-hC-CC-EEEEECCCc
Confidence 568999998875321 23566666 55 64 788888874
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=62.70 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=72.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhh--hhh-ccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEH--LRE-LDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|+ |+||+.++..|+.++ .++..++..+....-.. +.. ............. .|++ .++++|+|
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~~----~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----LLKGSEII 73 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCGG----GGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCHH----HhCCCCEE
Confidence 47999995 999999999999887 47888887643221111 111 0001111122221 1333 57789999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|-.||..... .....++++.|..-.+.+.+.+.+...-..++.+|-
T Consensus 74 vitAG~prkp-GmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 74 VVTAGLARKP-GMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EECCCCCCCS-SSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEecCCCCCC-CCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 9999965332 234468999999999999999999733234555553
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=63.00 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=70.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+||.|+|| |.+|+.++..|+..+. ++.++++.+.+... ..+.........++... | + .+.++++|+||
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDvVi 77 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADLVV 77 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence 69999998 9999999999999885 78888885432211 00111100112233322 2 2 33578999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
..|+....... ...+....|+.....+.+.+.+...-..+|.+|-
T Consensus 78 i~ag~~~~~g~-~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 78 ITAGAPQKPGE-SRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp ECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99986432222 2246778899999999999998733345666543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00036 Score=60.66 Aligned_cols=113 Identities=15% Similarity=-0.017 Sum_probs=74.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhc-c-CCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LREL-D-GATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~-~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
.++|.|+|+ |.+|+.++..|+..|. +|.++++++....... +... . ....++. ... |++ .++++|
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~t~---d~~----~~~daD 91 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIV-SGK---DYS----VSAGSK 91 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEE-EES---SSC----SCSSCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEE-EcC---CHH----HhCCCC
Confidence 479999998 9999999999999996 8999988653221110 1111 1 1111221 122 333 267899
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+||-+||..... .....+....|+.-.+.+.+.+.+...-..++.+|-
T Consensus 92 iVIitaG~p~kp-G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 92 LVVITAGARQQE-GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp EEEECCSCCCCS-SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 999999864332 223357889999999999999998733345666664
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00068 Score=59.03 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=71.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh--hhhhhc---cCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT--EHLREL---DGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
+++|.|+|| |.+|+.++..|+..|+ +|.++++++..... ..+... .....++... .+. +.++++|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-------~d~-~al~~aD 74 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-------NTY-DDLAGAD 74 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-------CCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-------CCH-HHhCCCC
Confidence 368999997 9999999999999998 88888887643321 011110 0111122211 223 4678999
Q ss_pred EEEEcccCcccCCCC----CcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 82 GVFHTASPVIFLSDN----PQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 82 ~vih~A~~~~~~~~~----~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
+||.+++........ ....+...|+.-.+.+.+.+.+...-..+|.+|
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999998753221111 124567789999999999988873223445444
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=7.1e-05 Score=65.95 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=51.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhh-hccCCCCcEEEEEccCCCccchHHhh-----CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLR-ELDGATERLHLFKANLLEEGSFDSAV-----DGC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 80 (322)
.+++|+|+||+|.||..+++.+...|++|++++|++.+. +.+. ++ +.. ...|.++.+++.+.+ .++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~--~~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKV--DLLKTKF---GFD---DAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTS---CCS---EEEETTSCSCSHHHHHHHCTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHc---CCc---eEEecCCHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999999999865322 2222 22 111 123666544443333 268
Q ss_pred CEEEEccc
Q 020747 81 DGVFHTAS 88 (322)
Q Consensus 81 d~vih~A~ 88 (322)
|+||+++|
T Consensus 227 d~vi~~~g 234 (345)
T 2j3h_A 227 DIYFENVG 234 (345)
T ss_dssp EEEEESSC
T ss_pred cEEEECCC
Confidence 99999986
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=62.95 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=72.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccC---CCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDG---ATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.+||.|+|| |.+|+.++..|+..+. ++.++++.+.+.... ...+.. ....+.... | + .+.++++|+
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~-~~dl~~~~~~~~~~~i~~-~--~----~~a~~~aDv 79 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGD-AIDLSNALPFTSPKKIYS-A--E----YSDAKDADL 79 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH-HHHHHTTGGGSCCCEEEE-C--C----GGGGGGCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHH-HHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCE
Confidence 469999998 9999999999998885 788888854322110 111110 112233322 2 2 335789999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||..|+...... .....+...|+...+.+.+.+.+...-..+|.+|-
T Consensus 80 Vii~ag~~~k~g-~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 80 VVITAGAPQKPG-ETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp EEECCCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred EEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 999998643222 22346788899999999999988733345666643
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=61.12 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=66.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCC---CCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGA---TERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|+ |.+|+.++..|+..|+ +|.++++++..... ....+... ........ .++ +.++++|+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~-~~~~l~~~~~~~~~~~i~~---~~~----~a~~~aDvV 71 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQA-EAEDIAHAAPVSHGTRVWH---GGH----SELADAQVV 71 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH-HHHHHTTSCCTTSCCEEEE---ECG----GGGTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH-HHHhhhhhhhhcCCeEEEE---CCH----HHhCCCCEE
Confidence 47999997 9999999999999998 99999987532211 11111110 11222221 122 357899999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
|.+++...... ....+....|+.....+++.+.+. +.. .+|.+|
T Consensus 72 Ii~~~~~~~~g-~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~t 116 (304)
T 2v6b_A 72 ILTAGANQKPG-ESRLDLLEKNADIFRELVPQITRA-APDAVLLVTS 116 (304)
T ss_dssp EECC-------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECS
T ss_pred EEcCCCCCCCC-CcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 99987532211 122456788999999999999887 444 444444
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.64 E-value=5.2e-05 Score=64.53 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++++++|+|+ |.+|++++..|++.|.+|++.+|+..+.. +....+.. ...+ +..+.+++.+ .++|+||+
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~-~la~~~~~-~~~~-----~~~~~~~~~~--~~~DivVn 186 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAE-ELAKLFAH-TGSI-----QALSMDELEG--HEFDLIIN 186 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHH-HHHHHTGG-GSSE-----EECCSGGGTT--CCCSEEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHHhhc-cCCe-----eEecHHHhcc--CCCCEEEE
Confidence 45789999998 78999999999999999999988754321 11111111 0122 1223233322 58999999
Q ss_pred cccCc
Q 020747 86 TASPV 90 (322)
Q Consensus 86 ~A~~~ 90 (322)
+++..
T Consensus 187 ~t~~~ 191 (271)
T 1nyt_A 187 ATSSG 191 (271)
T ss_dssp CCSCG
T ss_pred CCCCC
Confidence 99854
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=4.2e-05 Score=66.88 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh---C--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV---D--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~---~--~~d 81 (322)
.+++|+|+||+|.||..+++.+...|++|++++|++.+. +...++. .. ...|.++.+..+.+. . ++|
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~--~~~~~~g---~~---~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA--QSALKAG---AW---QVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH--HHHHHHT---CS---EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHcC---CC---EEEECCCccHHHHHHHHhCCCCce
Confidence 468999999999999999999999999999999865322 2222221 11 124666654433332 2 589
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||+++|
T Consensus 212 ~vi~~~g 218 (327)
T 1qor_A 212 VVYDSVG 218 (327)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9999997
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.1e-05 Score=66.57 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH---hh--CCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS---AV--DGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~---~~--~~~d 81 (322)
.+++|+|+||+|.||.++++.+...|++|++++|++.+. +.+.++. .. ...|.++.+..+. .. .++|
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~--~~~~~~g---~~---~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKA--ETARKLG---CH---HTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHHT---CS---EEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHcC---CC---EEEECCCHHHHHHHHHHhCCCCCe
Confidence 468999999999999999999999999999999875322 2222221 11 1236665443333 32 2689
Q ss_pred EEEEcccC
Q 020747 82 GVFHTASP 89 (322)
Q Consensus 82 ~vih~A~~ 89 (322)
+||+++|.
T Consensus 217 ~vi~~~g~ 224 (333)
T 1wly_A 217 VVYDSIGK 224 (333)
T ss_dssp EEEECSCT
T ss_pred EEEECCcH
Confidence 99999973
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=4.4e-05 Score=59.29 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=51.7
Q ss_pred cchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCc--cchHHhhC------CCCEEEEc
Q 020747 17 SGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEE--GSFDSAVD------GCDGVFHT 86 (322)
Q Consensus 17 tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~--~~~~~~~~------~~d~vih~ 86 (322)
+|+++.+.++.|.+.|++|++..|+...... +........+.+...+.+|++++ ++++++++ +-|++|||
T Consensus 25 s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnn 104 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHC 104 (157)
T ss_dssp EBCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEEC
T ss_pred cCCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5689999999999999999888776544321 11122222245677888999999 77776554 23999999
Q ss_pred ccC
Q 020747 87 ASP 89 (322)
Q Consensus 87 A~~ 89 (322)
||.
T Consensus 105 Agg 107 (157)
T 3gxh_A 105 LAN 107 (157)
T ss_dssp SBS
T ss_pred CCC
Confidence 985
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=60.27 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=47.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC-CCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR-GYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|+++||.|+|++|.+|+.+++.+.+. ++++.+. +|+.++.......++.... .++.-.++++++++++|+|
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-------~gv~v~~dl~~ll~~~DVV 77 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-------TGVALTDDIERVCAEADYL 77 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-------CSCBCBCCHHHHHHHCSEE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-------CCceecCCHHHHhcCCCEE
Confidence 44589999999999999999999876 5777764 6654322111111111100 0233345677777789999
Q ss_pred EEcc
Q 020747 84 FHTA 87 (322)
Q Consensus 84 ih~A 87 (322)
|+++
T Consensus 78 IDfT 81 (272)
T 4f3y_A 78 IDFT 81 (272)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9886
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0012 Score=57.73 Aligned_cols=111 Identities=18% Similarity=0.124 Sum_probs=70.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChh--hhhhcc---CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTE--HLRELD---GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
++|.|+|| |.+|+.++..|+..|+ +|++.++++...... .+.... ....++... . +. +.++++|+
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~------d~-~al~~aD~ 85 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-N------NY-EYLQNSDV 85 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-S------CG-GGGTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-C------CH-HHHCCCCE
Confidence 68999997 9999999999999998 999999876433210 111100 011222221 1 23 46789999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
||-+++......... ......|+.-...+.+.+.+...-..+|.+|
T Consensus 86 VI~avg~p~k~g~tr-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 86 VIITAGVPRKPNMTR-SDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp EEECCSCCCCTTCCS-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEcCCCCCCCCCch-hhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999887532211122 3566779999999999988863222444444
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00058 Score=59.30 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhc----cCCCCcEEEEEccCCCccchHHhhCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLREL----DGATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
+.+||.|+|+ |.+|+.++..|+..|. +|+++++++..... ....+ ......+.... | + .+.++++
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~-~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~a 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIG-DAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDA 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-HHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHH-HHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCC
Confidence 3479999998 9999999999998874 89999887532111 11111 11111233332 1 2 2357899
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
|+||.+++......... ......|..-...+++.+.+...-..++.+|
T Consensus 76 DvViia~~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 76 DLVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp SEEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CEEEEcCCCCCCCCCCH-HHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99999987643322222 5667889999999999998873222444443
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=9.1e-05 Score=65.03 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=54.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC---eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY---TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++|+|.||||++|+.+++.|.+++| +++++....+... .+. +. +..+.+ .|+ ++++ ++++|+||-
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~--~~~-~~--g~~i~~--~~~-~~~~----~~~~DvV~~ 74 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--RMG-FA--ESSLRV--GDV-DSFD----FSSVGLAFF 74 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--EEE-ET--TEEEEC--EEG-GGCC----GGGCSEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC--ccc-cC--CcceEE--ecC-CHHH----hcCCCEEEE
Confidence 6899999999999999999997765 4455542221110 000 10 111222 122 2222 458999998
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchh
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIG 132 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~ 132 (322)
+.+.. .+...+..+.+. |++ +|.+|+..
T Consensus 75 a~g~~-----------------~s~~~a~~~~~a-G~k-vId~Sa~~ 102 (340)
T 2hjs_A 75 AAAAE-----------------VSRAHAERARAA-GCS-VIDLSGAL 102 (340)
T ss_dssp CSCHH-----------------HHHHHHHHHHHT-TCE-EEETTCTT
T ss_pred cCCcH-----------------HHHHHHHHHHHC-CCE-EEEeCCCC
Confidence 76421 134566666666 764 78888763
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=6.7e-05 Score=66.41 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=52.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh---hC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA---VD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~d 81 (322)
.+++|+|+||+|.||..+++.+...|++|++++|++.+. +..+++. .. ...|..+.+..+.+ .. ++|
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~g---~~---~~~~~~~~~~~~~~~~~~~~~~~d 233 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKL--QMAEKLG---AA---AGFNYKKEDFSEATLKFTKGAGVN 233 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHT---CS---EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHcC---Cc---EEEecCChHHHHHHHHHhcCCCce
Confidence 468999999999999999999999999999999875332 2222221 11 22466554433332 22 589
Q ss_pred EEEEcccC
Q 020747 82 GVFHTASP 89 (322)
Q Consensus 82 ~vih~A~~ 89 (322)
+||+++|.
T Consensus 234 ~vi~~~G~ 241 (354)
T 2j8z_A 234 LILDCIGG 241 (354)
T ss_dssp EEEESSCG
T ss_pred EEEECCCc
Confidence 99999973
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.1e-05 Score=67.15 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=57.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.++|+|+|. |-+|+.+++.|.+.|++|+++++++... +.+.. ..+..+.||.++++.++++ ++++|+||-+
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v-----~~~~~--~g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHI-----ETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHH-----HHHHH--TTCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHH-----HHHHh--CCCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 368999995 9999999999999999999999876432 22221 2467899999999999887 7889999866
Q ss_pred c
Q 020747 87 A 87 (322)
Q Consensus 87 A 87 (322)
.
T Consensus 76 ~ 76 (413)
T 3l9w_A 76 I 76 (413)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00016 Score=63.66 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=56.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+++|.|.||||++|+.+++.|.+.+. +++++.++.+... .+.......... ....+.+. +. ++++|+||.+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~--~~~~~~~~~~g~--~~~~~~~~---~~-~~~vDvV~~a 75 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGE--PVHFVHPNLRGR--TNLKFVPP---EK-LEPADILVLA 75 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTS--BGGGTCGGGTTT--CCCBCBCG---GG-CCCCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCc--hhHHhCchhcCc--ccccccch---hH-hcCCCEEEEc
Confidence 47999999999999999999998764 7777765432211 111110000000 00111222 22 4789999988
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
++... +..++..+.+. |+ ++|-.|+.
T Consensus 76 ~g~~~-----------------s~~~a~~~~~a-G~-~VId~Sa~ 101 (345)
T 2ozp_A 76 LPHGV-----------------FAREFDRYSAL-AP-VLVDLSAD 101 (345)
T ss_dssp CCTTH-----------------HHHTHHHHHTT-CS-EEEECSST
T ss_pred CCcHH-----------------HHHHHHHHHHC-CC-EEEEcCcc
Confidence 75321 23455555565 65 68888885
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00093 Score=57.87 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=70.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCCCcChhhhhhccC------CCCcEEEEEccCCCccchHHhhCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPNSPKTEHLRELDG------ATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
|+|.|+|+ |.+|+.++..|++. |++|+++++++....... ..+.. ...++.. . +| .+. ++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~-~~l~~~~~~~~~~~~i~~-t---~d---~~~-l~~a 70 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKA-LDMYESGPVGLFDTKVTG-S---ND---YAD-TANS 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHH-HHHHTTHHHHTCCCEEEE-E---SC---GGG-GTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHH-HhHHhhhhcccCCcEEEE-C---CC---HHH-HCCC
Confidence 47999997 99999999999985 799999999864332111 01110 0111211 1 22 233 7889
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|+||-+++..... ......+.+.|+.....+.+.+.+...-..+|.+|-
T Consensus 71 DvViiav~~p~~~-g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 71 DIVIITAGLPRKP-GMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp SEEEECCSCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 9999888643211 222346777899999999999988733345555543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0017 Score=57.30 Aligned_cols=118 Identities=12% Similarity=0.017 Sum_probs=73.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-----eEEEEEeCCCCcCh---hhhhhccC-CCCcEEEEEccCCCccchHHhhC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-----TVKATVRDPNSPKT---EHLRELDG-ATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~---~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
.+||.|+||+|+||++++..|+..+. .+.+.+...+.... ....++.. ..+-...+.. . ....+.++
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~--~~~y~~~~ 107 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--G--IDPYEVFE 107 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--E--SCHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--e--cCCHHHhC
Confidence 47899999999999999999998863 26665554332110 01111111 0111111111 1 12356788
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhc-CCccEEEEecc
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV-HSIKRVVLTSS 130 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~-~~~~~~i~~SS 130 (322)
++|+||-.||..... .....++.+.|+.-.+.+.+.+.+. ..-..++.+|-
T Consensus 108 daDvVVitag~prkp-G~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 108 DVDWALLIGAKPRGP-GMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp TCSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999999998864322 2344688999999999999999874 23345666664
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=63.51 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=54.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.+++++|+|.| .|.+|+.+++.+.+.|++|++++..+..... . .. -..+..|.+|.+.+.++.+.+|+|.
T Consensus 9 ~~~~~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~~-~---~a-----d~~~~~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 9 LKFGATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPCR-Y---VA-----HEFIQAKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTG-G---GS-----SEEEECCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChhh-h---hC-----CEEEECCCCCHHHHHHHHHhCCcce
Confidence 34578999999 6889999999999999999999876543221 1 11 1466789999999999988899874
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=64.84 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=49.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhh-ccCCCCcEEEEEccCCCccchHHh---hC-CCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRE-LDGATERLHLFKANLLEEGSFDSA---VD-GCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~---~~-~~d~ 82 (322)
++|+|+||+|.||..+++.+...|+ +|++++++..+. +.+.+ + +.. ...|..+.+..+.+ .. ++|+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~--~~~~~~~---g~~---~~~d~~~~~~~~~~~~~~~~~~d~ 233 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKC--ILLTSEL---GFD---AAINYKKDNVAEQLRESCPAGVDV 233 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHH--HHHHHTS---CCS---EEEETTTSCHHHHHHHHCTTCEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHH--HHHHHHc---CCc---eEEecCchHHHHHHHHhcCCCCCE
Confidence 8999999999999999999999999 999999864322 22221 2 111 23466654332222 22 5899
Q ss_pred EEEccc
Q 020747 83 VFHTAS 88 (322)
Q Consensus 83 vih~A~ 88 (322)
||+++|
T Consensus 234 vi~~~G 239 (357)
T 2zb4_A 234 YFDNVG 239 (357)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999987
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00082 Score=58.41 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=71.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhh--hhc---cCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHL--REL---DGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
.++|.|+|+ |.+|+.++..|++.|+ +|++.++++........ ... .....++... .+. +.++++|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-------~d~-~a~~~aD 74 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-------DDY-ADISGSD 74 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-------SCG-GGGTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-------CCH-HHhCCCC
Confidence 368999997 9999999999999998 99999987643221100 000 0001122211 123 3578999
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+||-+++....... ...+....|......+++.+.+...-..+|.+|.
T Consensus 75 iVi~avg~p~~~g~-~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 75 VVIITASIPGRPKD-DRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp EEEECCCCSSCCSS-CGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred EEEEeCCCCCCCCC-cHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99999875432212 2245567788888899998887633234555554
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=65.21 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=57.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+|+.++|.|.||+|++|+.+++.|.+++ .+++++.+..+.. ..+..... ....+ ..|+.-.+ +..++++|+
T Consensus 13 ~M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g--~~~~~~~~~~~~~v---~~dl~~~~--~~~~~~vDv 85 (359)
T 1xyg_A 13 PEKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG--QSMESVFPHLRAQK---LPTLVSVK--DADFSTVDA 85 (359)
T ss_dssp --CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT--SCHHHHCGGGTTSC---CCCCBCGG--GCCGGGCSE
T ss_pred cccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC--CCHHHhCchhcCcc---cccceecc--hhHhcCCCE
Confidence 3445799999999999999999999876 4787776543221 11111100 00110 12332211 334568999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
||.+++... +...+..+ +. |+ ++|-.|+.
T Consensus 86 Vf~atp~~~-----------------s~~~a~~~-~a-G~-~VId~sa~ 114 (359)
T 1xyg_A 86 VFCCLPHGT-----------------TQEIIKEL-PT-AL-KIVDLSAD 114 (359)
T ss_dssp EEECCCTTT-----------------HHHHHHTS-CT-TC-EEEECSST
T ss_pred EEEcCCchh-----------------HHHHHHHH-hC-CC-EEEECCcc
Confidence 998875321 13445555 44 65 67888875
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=65.13 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH---hhC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS---AVD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~---~~~--~~d 81 (322)
.+++|+|+||+|.||..+++.+...|++|++++|++.+. +...++. .. ...|..+.+..+. ... ++|
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~g---a~---~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ--KIVLQNG---AH---EVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTT---CS---EEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHH--HHHHHcC---CC---EEEeCCCchHHHHHHHHcCCCCcE
Confidence 468999999999999999999999999999999875332 2222221 11 1245555443333 333 689
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||+++|
T Consensus 242 ~vi~~~G 248 (351)
T 1yb5_A 242 IIIEMLA 248 (351)
T ss_dssp EEEESCH
T ss_pred EEEECCC
Confidence 9999986
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00048 Score=59.63 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=73.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhhccC---CCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRELDG---ATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|| |.+|+.++..|+..+ .++.++++++.+... ....+.. ....+.... + + .+.++++|+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g-~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~V 71 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQA-HAEDILHATPFAHPVWVWA-G--S----YGDLEGARAV 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH-HHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH-HHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEE
Confidence 47999997 999999999999987 689899886432211 1111111 011223322 2 2 3357899999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|..|+...... .....+...|+.....+.+.+.+...-..+|.+|-
T Consensus 72 ii~ag~~~~~g-~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 72 VLAAGVAQRPG-ETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EECCCCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EECCCCCCCCC-cCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99998643322 23346788899999999999988733345666543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=62.89 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=51.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhh-hhccCCCCcEEEEEccCCCccchHHhh----CCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHL-RELDGATERLHLFKANLLEEGSFDSAV----DGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~d 81 (322)
++++|+|+||+|.||..+++.+...|.+|++++|++.+. +.+ +++ +.. ...|..+.+..+.+. .++|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~~---g~~---~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKC--RFLVEEL---GFD---GAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTT---CCS---EEEETTTSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHc---CCC---EEEECCCHHHHHHHHHhcCCCce
Confidence 468999999999999999999999999999999875332 222 222 111 123555544333222 2589
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||+++|
T Consensus 221 ~vi~~~g 227 (336)
T 4b7c_A 221 VFFDNVG 227 (336)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999986
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00068 Score=59.89 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=29.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRD 41 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 41 (322)
+++|.|.||||++|+.+++.|.+.+ .+|.++.++
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s 42 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAAS 42 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEEC
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 3699999999999999999998875 688888764
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.39 E-value=4.1e-05 Score=58.48 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=49.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+++|+|+|+ |.+|+.+++.|.+.|++|++.+|++.+. +.+.+.. + .. ....++++++++++|+||.+.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~--~~~a~~~--~--~~-----~~~~~~~~~~~~~~Divi~at 88 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHV--RAFAEKY--E--YE-----YVLINDIDSLIKNNDVIITAT 88 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHH--HHHHHHH--T--CE-----EEECSCHHHHHHTCSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHH--HHHHHHh--C--Cc-----eEeecCHHHHhcCCCEEEEeC
Confidence 579999995 9999999999999999988888875432 1111111 1 11 123345677788999999887
Q ss_pred cC
Q 020747 88 SP 89 (322)
Q Consensus 88 ~~ 89 (322)
+.
T Consensus 89 ~~ 90 (144)
T 3oj0_A 89 SS 90 (144)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.37 E-value=9.7e-05 Score=67.70 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=55.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih 85 (322)
|+|+|.| .|-+|++|++.|.++||+|+++++++... +.+.. .-.+..+.||-++++.++++ ++++|.+|-
T Consensus 4 M~iiI~G-~G~vG~~la~~L~~~~~~v~vId~d~~~~-----~~~~~-~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 4 MKIIILG-AGQVGGTLAENLVGENNDITIVDKDGDRL-----RELQD-KYDLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp EEEEEEC-CSHHHHHHHHHTCSTTEEEEEEESCHHHH-----HHHHH-HSSCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHH-----HHHHH-hcCcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 7899999 69999999999999999999999876332 22211 12468899999999998877 678999873
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00028 Score=60.38 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=45.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|.|+|+||.+|+.+++.|.+.|++|++.+|++... +.+.+. + + +.++ ..++++++|+||-+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~--~~~~~~---g--~-----~~~~---~~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGR--DRLQGM---G--I-----PLTD---GDGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHH--HHHHHT---T--C-----CCCC---SSGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHH--HHHHhc---C--C-----CcCC---HHHHhcCCCEEEEcC
Confidence 36999999999999999999999999999888865322 122211 1 1 1222 334667899999664
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0018 Score=55.84 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=71.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++|.|+|| |.+|+.++..|+..|+ +|..+++++..... ..+.... .+++... . | . +.++++|+||
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~--~~~i~~t-~---d---~-~~l~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN--LPNVEIS-K---D---L-SASAHSKVVI 82 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT--CTTEEEE-S---C---G-GGGTTCSEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc--CCCeEEe-C---C---H-HHHCCCCEEE
Confidence 478999995 9999999999999998 89999987641111 1111111 1244432 2 2 2 3578999999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-.+|...+ ......+...|+.-.+.+++.+.+...-..+|.+|-
T Consensus 83 ~aag~~~p--G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 83 FTVNSLGS--SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp ECCCC------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred EcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 99986322 223356778899999999999988732234455553
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00047 Score=56.38 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=46.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+|+|.|+| +|.+|+++++.|.+.|++|++.+|+... .+.+... .+... +++++++++|+||.+.
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~-----~~~~~~~--g~~~~--------~~~~~~~~~DvVi~av 91 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKR-----TARLFPS--AAQVT--------FQEEAVSSPEVIFVAV 91 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHH-----HHHHSBT--TSEEE--------EHHHHTTSCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHHc--CCcee--------cHHHHHhCCCEEEECC
Confidence 47899999 8999999999999999999999886532 2222111 22221 4566788999999776
Q ss_pred c
Q 020747 88 S 88 (322)
Q Consensus 88 ~ 88 (322)
.
T Consensus 92 ~ 92 (215)
T 2vns_A 92 F 92 (215)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.34 E-value=8.9e-05 Score=63.34 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=52.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++++++|+|+ |.+|++++..|.+.|. +|++.+|+.++... ...++......+.....+ .+++.+.++++|+||
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~-la~~~~~~~~~~~i~~~~---~~~l~~~l~~~DiVI 199 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQA-LADVINNAVGREAVVGVD---ARGIEDVIAAADGVV 199 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHH-HHHHHHHHHTSCCEEEEC---STTHHHHHHHSSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHHHhhcCCceEEEcC---HHHHHHHHhcCCEEE
Confidence 45789999997 8999999999999998 69999887643321 111111111112222233 345677778899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
|+...
T Consensus 200 naTp~ 204 (283)
T 3jyo_A 200 NATPM 204 (283)
T ss_dssp ECSST
T ss_pred ECCCC
Confidence 88753
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00021 Score=65.19 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=31.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|+| +|++|..++..|++.|++|++.+|++.
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 6899998 699999999999999999999998764
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00025 Score=61.27 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-hhh-hhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-EHL-RELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.++++++|+|+ |..|++++..|.+.|. +|++..|+.++... +.+ .++... ........++.+.+.+.+.+.++|+
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~-~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN-TDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhc-cCcceEEechHhhhhhHhhccCceE
Confidence 45789999996 8999999999999997 79999998432111 111 111110 1122223344443233556778999
Q ss_pred EEEcccC
Q 020747 83 VFHTASP 89 (322)
Q Consensus 83 vih~A~~ 89 (322)
|||+...
T Consensus 224 IINaTp~ 230 (312)
T 3t4e_A 224 LTNGTKV 230 (312)
T ss_dssp EEECSST
T ss_pred EEECCcC
Confidence 9988754
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00058 Score=61.49 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=54.5
Q ss_pred CCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 3 ~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+.||++++|+|.| .|.+|+.+++.+.+.|++|++++ .+..... . .. .....+.+|..|.+.+.++.+.+|+
T Consensus 19 ~~mm~~~~I~ilG-gG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~-~---~a---d~~~~~~~~~~d~~~l~~~a~~~d~ 89 (403)
T 3k5i_A 19 GHMWNSRKVGVLG-GGQLGRMLVESANRLNIQVNVLD-ADNSPAK-Q---IS---AHDGHVTGSFKEREAVRQLAKTCDV 89 (403)
T ss_dssp --CCSCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEEE-STTCTTG-G---GC---CSSCCEESCTTCHHHHHHHHTTCSE
T ss_pred ccCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE-CCCCcHH-H---hc---cccceeecCCCCHHHHHHHHHhCCE
Confidence 3445678999999 57999999999999999999998 5433221 1 11 1123567899999999999999998
Q ss_pred EE
Q 020747 83 VF 84 (322)
Q Consensus 83 vi 84 (322)
|+
T Consensus 90 i~ 91 (403)
T 3k5i_A 90 VT 91 (403)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0016 Score=56.38 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=69.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChh--hhhhcc-CCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTE--HLRELD-GATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|+|.|+| +|.+|+.++..|++.| ++|++++|++...... .+.... .....+..... | . +.++++|+|
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d---~-~~~~~aDvV 73 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---D---W-AALADADVV 73 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---C---G-GGGTTCSEE
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeC---C---H-HHhCCCCEE
Confidence 5899999 8999999999999999 8999999875332110 000000 00112232222 2 2 356789999
Q ss_pred EEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 84 FHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 84 ih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
|-+++.... . ......+...|+.....+++.+.+...-..+|.+|
T Consensus 74 iiav~~~~~~~~~~-g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 74 ISTLGNIKLQQDNP-TGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEecCCcccCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 988875331 1 11224577789999999999988762223444443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=57.22 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=69.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
|+|.|+|+ |.+|+.++..|++.|+ +|+++++++....... +.............. +|. +.++++|+||
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~aDvVi 72 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGSDVVI 72 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCCCEEE
Confidence 47999997 9999999999999999 9999998753221100 000000001112211 232 2467899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
-+++..... ......+...|+.....+++.+.+...-..+|.+|
T Consensus 73 iav~~~~~~-g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 73 VAAGVPQKP-GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp ECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EccCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 888653221 11234667788999999999988862223455554
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00024 Score=61.21 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++++|+|+|+ |.+|++++..|++.|. +|++.+|+..+. +.+.+....... +..+.+++.+.+.++|+||
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka--~~la~~~~~~~~------~~~~~~~~~~~~~~aDivI 209 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKA--ERLVREGDERRS------AYFSLAEAETRLAEYDIII 209 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHH--HHHHHHSCSSSC------CEECHHHHHHTGGGCSEEE
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHH--HHHHHHhhhccC------ceeeHHHHHhhhccCCEEE
Confidence 45789999996 7899999999999997 899998875332 112111110000 1112245666778899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
++.+.
T Consensus 210 n~t~~ 214 (297)
T 2egg_A 210 NTTSV 214 (297)
T ss_dssp ECSCT
T ss_pred ECCCC
Confidence 99875
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0014 Score=56.93 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=68.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhh--hhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHL--RELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+|+|.|+|+ |.+|+.++..|++.|+ +|++++|++........ ............... +++ +.++++|+|
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~aD~V 79 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDADMV 79 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCSEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCCCCEE
Confidence 368999997 9999999999999999 99999987532210011 110000011222111 122 246789999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEE
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~ 127 (322)
|-+++..... .....+....|+.....+++.+.+. +.+.+|.
T Consensus 80 ii~v~~~~~~-g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi 121 (319)
T 1lld_A 80 VITAGPRQKP-GQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121 (319)
T ss_dssp EECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEE
T ss_pred EECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEE
Confidence 9888643221 2223467778888888898888876 4443333
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00066 Score=56.84 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=52.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-----------------hhh-hhccCC--CCcEEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-----------------EHL-RELDGA--TERLHLFKAN 66 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------~~~-~~~~~~--~~~~~~~~~D 66 (322)
.++|+|.| .|.+|+++++.|+..|. ++++++++.-+..+ +.+ +.+... ..+++.+..+
T Consensus 31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 47999999 68999999999999996 78888887522111 111 111111 2245566666
Q ss_pred CCCccchHHhhCCCCEEEEcc
Q 020747 67 LLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 67 l~~~~~~~~~~~~~d~vih~A 87 (322)
+++ +.++++++++|+||.+.
T Consensus 110 ~~~-~~~~~~~~~~DvVi~~~ 129 (249)
T 1jw9_B 110 LDD-AELAALIAEHDLVLDCT 129 (249)
T ss_dssp CCH-HHHHHHHHTSSEEEECC
T ss_pred CCH-hHHHHHHhCCCEEEEeC
Confidence 653 45677788999999774
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=61.60 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=62.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH---HhhC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD---SAVD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~--~~d 81 (322)
++++|+|+||+|.||...+..+...|.+|+++++++.+. +..+++. .. . ..|..+.+..+ ++.. ++|
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~g---a~-~--~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKL--KIAKEYG---AE-Y--LINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTT---CS-E--EEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHcC---Cc-E--EEeCCCchHHHHHHHHhCCCCce
Confidence 468999999999999999999999999999999865332 2233321 11 1 23444433333 2322 589
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+||+++|. . . ....++.+++. +++|.++..
T Consensus 220 ~vid~~g~--~--------~-------~~~~~~~l~~~---G~iv~~G~~ 249 (334)
T 3qwb_A 220 ASFDSVGK--D--------T-------FEISLAALKRK---GVFVSFGNA 249 (334)
T ss_dssp EEEECCGG--G--------G-------HHHHHHHEEEE---EEEEECCCT
T ss_pred EEEECCCh--H--------H-------HHHHHHHhccC---CEEEEEcCC
Confidence 99999873 1 1 12344544442 588888765
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00064 Score=56.50 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=28.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEE-EEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~ 42 (322)
|+||.|+|+ |.+|+.+++.+.++++++.+ ++|+.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~ 37 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP 37 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc
Confidence 479999999 99999999999998777665 45543
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.23 E-value=2.2e-05 Score=67.38 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=48.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++++++|||++ .+|+++++.|++.| +|++.+|+..+.. +...++.... ... .+.+|+.+. .+.+.++|+||
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~-~l~~~~~~~~~~~~-~~~~d~~~~---~~~~~~~DilV 198 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAE-ALAKEIAEKLNKKF-GEEVKFSGL---DVDLDGVDIII 198 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHH-HHHHHHHHHHTCCH-HHHEEEECT---TCCCTTCCEEE
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHH-HHHHHHhhhccccc-ceeEEEeeH---HHhhCCCCEEE
Confidence 457899999975 99999999999999 9999888653321 1111111000 000 012233331 33456899999
Q ss_pred EcccCc
Q 020747 85 HTASPV 90 (322)
Q Consensus 85 h~A~~~ 90 (322)
|+++..
T Consensus 199 n~ag~~ 204 (287)
T 1nvt_A 199 NATPIG 204 (287)
T ss_dssp ECSCTT
T ss_pred ECCCCC
Confidence 999853
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=63.39 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh----CCCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV----DGCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~----~~~d~ 82 (322)
.+++|+|+||+|.||..+++.+...|.+|+++++++.+. +...++. .. . ..|..+.+..+.+. .++|+
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~lG---a~-~--~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKC--EACERLG---AK-R--GINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHHT---CS-E--EEETTTSCHHHHHHHHHSSCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHhcC---CC-E--EEeCCchHHHHHHHHHhCCCceE
Confidence 468999999999999999999999999999999876432 2333322 11 1 23444443323222 26899
Q ss_pred EEEccc
Q 020747 83 VFHTAS 88 (322)
Q Consensus 83 vih~A~ 88 (322)
||+++|
T Consensus 239 vid~~g 244 (353)
T 4dup_A 239 ILDMIG 244 (353)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999987
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00032 Score=63.54 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=54.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.+++++|+|.| .|.+|+.+++.+.+.|++|++++..+.... . ... -..+..|..|.+.+.++.+++|+|+
T Consensus 32 ~~~~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~---~-~~a-----d~~~~~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPGAWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDPASPA---G-AVA-----DRHLRAAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCTTCHH---H-HHS-----SEEECCCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCcCch---h-hhC-----CEEEECCcCCHHHHHHHHhcCCEEE
Confidence 35678999999 689999999999999999998875443221 1 111 1456689999999998888999987
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=56.33 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCcE-EEEEC-Cc-----------------chhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 7 EEKV-VCVTG-AS-----------------GFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~-ilVtG-at-----------------G~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.+++ ||||+ +| |-.|.+++++++++|++|+.+.+..+
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 4566 99975 45 88999999999999999999998654
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=59.01 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=52.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+.+|+|+|.| +|.+|+.+++.+.+.|++|++++..+...... . --..+..|..|.+.+.++++.+|+|.
T Consensus 12 ~~~k~IlIlG-~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~----~-----ad~~~~~~~~d~~~l~~~~~~~dvI~ 80 (389)
T 3q2o_A 12 LPGKTIGIIG-GGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQ----V-----ADIEIVASYDDLKAIQHLAEISDVVT 80 (389)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSTTCTTTT----T-----CSEEEECCTTCHHHHHHHHHTCSEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchHH----h-----CCceEecCcCCHHHHHHHHHhCCEee
Confidence 4578999999 67899999999999999999998765332110 0 01345678888888999999999873
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=62.36 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhh--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAV--DGC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~--~~~ 80 (322)
.+++|+|+||+|.||..+++.+... |.+|+++++++.+. +..+++. .. ...|..+.+. +.++. .++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~--~~~~~~g---~~---~~~~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV--EAAKRAG---AD---YVINASMQDPLAEIRRITESKGV 241 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH--HHHHHHT---CS---EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHH--HHHHHhC---CC---EEecCCCccHHHHHHHHhcCCCc
Confidence 4689999999999999999999999 99999998865332 2222221 11 1235555443 34444 368
Q ss_pred CEEEEcccC
Q 020747 81 DGVFHTASP 89 (322)
Q Consensus 81 d~vih~A~~ 89 (322)
|+||+++|.
T Consensus 242 d~vi~~~g~ 250 (347)
T 1jvb_A 242 DAVIDLNNS 250 (347)
T ss_dssp EEEEESCCC
T ss_pred eEEEECCCC
Confidence 999999974
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00031 Score=61.77 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=63.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhhC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAVD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~d 81 (322)
.+++|+|+||+|.+|..+++.+...|++|++++|++.+. +.+.++. .. . ..|.++.+. +.++.. ++|
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~--~~~~~~g---a~-~--~~d~~~~~~~~~~~~~~~~~~~d 237 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKL--RRAKALG---AD-E--TVNYTHPDWPKEVRRLTGGKGAD 237 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHHT---CS-E--EEETTSTTHHHHHHHHTTTTCEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHhcC---CC-E--EEcCCcccHHHHHHHHhCCCCce
Confidence 468999999999999999999999999999999865332 2222221 11 1 246655432 333332 689
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+||+++|. . . ....++.++.. ++++.+++.
T Consensus 238 ~vi~~~g~--~----~-----------~~~~~~~l~~~---G~~v~~g~~ 267 (343)
T 2eih_A 238 KVVDHTGA--L----Y-----------FEGVIKATANG---GRIAIAGAS 267 (343)
T ss_dssp EEEESSCS--S----S-----------HHHHHHHEEEE---EEEEESSCC
T ss_pred EEEECCCH--H----H-----------HHHHHHhhccC---CEEEEEecC
Confidence 99999972 1 1 12445555443 488888875
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0023 Score=48.25 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCCcEEEEECCc---chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGAS---GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+..++|.|.|++ |-+|..+++.|++.||+|+.++++... + ..+.-+.+++++.+.+|+
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~---------------i----~G~~~~~s~~el~~~vDl 72 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE---------------I----EGLKCYRSVRELPKDVDV 72 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---------------E----TTEECBSSGGGSCTTCCE
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe---------------E----CCeeecCCHHHhCCCCCE
Confidence 456899999987 899999999999999997666543211 0 112233445555667899
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++-+... .....+++.|.+. +++.++..+|
T Consensus 73 vii~vp~-----------------~~v~~v~~~~~~~-g~~~i~~~~~ 102 (138)
T 1y81_A 73 IVFVVPP-----------------KVGLQVAKEAVEA-GFKKLWFQPG 102 (138)
T ss_dssp EEECSCH-----------------HHHHHHHHHHHHT-TCCEEEECTT
T ss_pred EEEEeCH-----------------HHHHHHHHHHHHc-CCCEEEEcCc
Confidence 8865411 1123455556665 7887776654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0004 Score=60.97 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH---HhhC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD---SAVD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~--~~d 81 (322)
++.+|+|+||+|.||...+..+...|.+|+++++++.+. +.+.++.. . . ..|..+.+..+ ++.. ++|
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~lga---~-~--~~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT--EELLRLGA---A-Y--VIDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH--HHHHHHTC---S-E--EEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHhCCC---c-E--EEeCCcccHHHHHHHHhCCCCCc
Confidence 468999999999999999999999999999999877554 33333321 1 1 23444433323 2222 689
Q ss_pred EEEEcccC
Q 020747 82 GVFHTASP 89 (322)
Q Consensus 82 ~vih~A~~ 89 (322)
+||+++|.
T Consensus 216 vvid~~g~ 223 (340)
T 3gms_A 216 AAIDSIGG 223 (340)
T ss_dssp EEEESSCH
T ss_pred EEEECCCC
Confidence 99999863
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=61.54 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH---HhhC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD---SAVD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~--~~d 81 (322)
++++|+|+||+|.||...+..+...|.+|+++++++.+. +...++. .. . ..|..+.+..+ ++.. ++|
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~G---a~-~--~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKA--AHAKALG---AW-E--TIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHH--HHHHHHT---CS-E--EEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHcC---CC-E--EEeCCCccHHHHHHHHhCCCCce
Confidence 468999999999999999999999999999999865432 2233321 11 1 23444443333 2332 689
Q ss_pred EEEEcccC
Q 020747 82 GVFHTASP 89 (322)
Q Consensus 82 ~vih~A~~ 89 (322)
+||+++|.
T Consensus 212 vvid~~g~ 219 (325)
T 3jyn_A 212 VVYDGVGQ 219 (325)
T ss_dssp EEEESSCG
T ss_pred EEEECCCh
Confidence 99999873
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00017 Score=63.29 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=55.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~A 87 (322)
++++|+|+ |.+|+.++++|.++|+ |+++++++... + +.+ ..+..+.||.+|++.++++ ++++|.||-+.
T Consensus 116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~--~-~~~-----~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~ 185 (336)
T 1lnq_A 116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRK--K-VLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVDL 185 (336)
T ss_dssp CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHH--H-HHH-----TTCEEEESCTTSHHHHHHTCSTTEEEEEECC
T ss_pred CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhh--h-HHh-----CCcEEEEeCCCCHHHHHhcChhhccEEEEcC
Confidence 58999995 9999999999999999 99998765332 2 221 3578999999999999887 78899998654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00055 Score=59.02 Aligned_cols=73 Identities=22% Similarity=0.169 Sum_probs=50.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+.+|+|+||+|.+|..++..+...|.+|+++++++.+. +...++. .. . ..|..+.+++.+.++++|+||+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~g---a~-~--~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL--ALPLALG---AE-E--AATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS--HHHHHTT---CS-E--EEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHhcC---CC-E--EEECCcchhHHHHhcCceEEEE-
Confidence 467999999999999999999999999999999876443 2233321 11 1 1344331234444478999999
Q ss_pred cc
Q 020747 87 AS 88 (322)
Q Consensus 87 A~ 88 (322)
+|
T Consensus 196 ~g 197 (302)
T 1iz0_A 196 VR 197 (302)
T ss_dssp CS
T ss_pred CC
Confidence 86
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0003 Score=62.40 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+.++|+|+|+ |.+|+.+++.|...|.+|++.+|++.+. +.+.+... ..+..+ ..+.+++.+.+.++|+||++
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~--~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL--SYLETLFG--SRVELL---YSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHG--GGSEEE---ECCHHHHHHHHHTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHHHHhhC--ceeEee---eCCHHHHHHHHcCCCEEEEC
Confidence 4589999998 9999999999999999999999876432 22222111 112111 12345666777899999999
Q ss_pred ccC
Q 020747 87 ASP 89 (322)
Q Consensus 87 A~~ 89 (322)
++.
T Consensus 238 ~~~ 240 (361)
T 1pjc_A 238 VLV 240 (361)
T ss_dssp CCC
T ss_pred CCc
Confidence 864
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0043 Score=53.58 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=71.9
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhcc------CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELD------GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
||.|+|| |.+|+.++..|+..|. +|..+++++...... ...+. ....++... . | . +.++++|+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~-~~dl~~~~~~~~~~~~i~~t-~---d---~-~a~~~aD~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGE-ALDLAHAAAELGVDIRISGS-N---S---Y-EDMRGSDI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHH-HHHHHHHHHHHTCCCCEEEE-S---C---G-GGGTTCSE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHH-HHHHHHhhhhcCCCeEEEEC-C---C---H-HHhCCCCE
Confidence 5889998 9999999999998887 699999876433211 11110 111122211 2 2 2 36789999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||..|+....... ....+...|+.-...+++.+.+...-..+|.+|-
T Consensus 71 Vi~~ag~~~k~G~-~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 71 VLVTAGIGRKPGM-TREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EEECCSCCCCSSC-CTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEeCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999886433222 2356788899999999999988632235666653
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00087 Score=57.71 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=31.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
+++|.|+||+|.+|+.++..|.+.|++|++.+|++
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 36899999999999999999999999999987654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00044 Score=59.80 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=30.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|+|.|+| .|.+|+.++..|.+.|++|++.+|++
T Consensus 4 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAG-AGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 6899999 59999999999999999999998865
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00062 Score=59.82 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=50.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhhC--CCCEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVD--GCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~--~~d~v 83 (322)
.+.+|+|+||+|.||...+..+...|.+|++++++..+. +...++. .. ..+..+ .+. +.+.++.. ++|+|
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~~g---a~-~v~~~~-~~~~~~v~~~~~~~g~Dvv 231 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT--EFVKSVG---AD-IVLPLE-EGWAKAVREATGGAGVDMV 231 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHHHT---CS-EEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHhcC---Cc-EEecCc-hhHHHHHHHHhCCCCceEE
Confidence 468999999999999999999999999999999876443 3333332 11 222222 121 12233332 58999
Q ss_pred EEcccC
Q 020747 84 FHTASP 89 (322)
Q Consensus 84 ih~A~~ 89 (322)
|+++|.
T Consensus 232 id~~g~ 237 (342)
T 4eye_A 232 VDPIGG 237 (342)
T ss_dssp EESCC-
T ss_pred EECCch
Confidence 999873
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00057 Score=60.90 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=53.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|+|+|+ |.||+.+++.|...|.+|++.+|++.+. +.+.+.. +..+. .+..+..+++++++++|+||+
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l--~~~~~~~--g~~~~---~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKL--RQLDAEF--CGRIH---TRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHT--TTSSE---EEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHHHHhc--CCeeE---eccCCHHHHHHHHcCCCEEEE
Confidence 45789999997 9999999999999999999999875332 1222211 11111 223345567778889999999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+++.
T Consensus 238 ~~~~ 241 (377)
T 2vhw_A 238 AVLV 241 (377)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0043 Score=52.72 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++||.|.|++|-+|+.+++.+.+. +.++.+. +|+.+........++.... ..++.-..++++++.++|+||
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~------~~gv~v~~dl~~ll~~aDVvI 93 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD------FLGVRITDDPESAFSNTEGIL 93 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS------CCSCBCBSCHHHHTTSCSEEE
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC------cCCceeeCCHHHHhcCCCEEE
Confidence 3469999999999999999999865 6786655 5543321111112221110 122333356777888899999
Q ss_pred Ecc
Q 020747 85 HTA 87 (322)
Q Consensus 85 h~A 87 (322)
.+.
T Consensus 94 DFT 96 (288)
T 3ijp_A 94 DFS 96 (288)
T ss_dssp ECS
T ss_pred EcC
Confidence 875
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00077 Score=57.24 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.++++++|+|+ |.+|++++..|++.|++|++.+|+.++... ....... ...+.. .|+ +++.+ .++|+||+
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~-l~~~~~~-~~~~~~--~~~---~~~~~--~~~DivIn 186 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKE-LAERFQP-YGNIQA--VSM---DSIPL--QTYDLVIN 186 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHH-HHHHHGG-GSCEEE--EEG---GGCCC--SCCSEEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHccc-cCCeEE--eeH---HHhcc--CCCCEEEE
Confidence 45789999997 789999999999999999999997643211 1111111 012222 222 11110 37899999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+++.
T Consensus 187 ~t~~ 190 (272)
T 1p77_A 187 ATSA 190 (272)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9875
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00022 Score=60.59 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=49.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++++++|+|+ |..|++++..|.+.|. +|++..|+.++.. .+.. ++... ..+++.++++++|+||
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~-----~la~---~~~~~-----~~~~~~~~~~~aDiVI 180 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFN-----NWSL---NINKI-----NLSHAESHLDEFDIII 180 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGT-----TCCS---CCEEE-----CHHHHHHTGGGCSEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----HHHH---hcccc-----cHhhHHHHhcCCCEEE
Confidence 34689999995 8999999999999998 8999988764432 1111 12211 2345666778899999
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
++..
T Consensus 181 naTp 184 (277)
T 3don_A 181 NTTP 184 (277)
T ss_dssp ECCC
T ss_pred ECcc
Confidence 8864
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=56.78 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=55.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC---CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG---YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++|.|.||||++|+.+++.|.+++ .+++++....+... .+. +. +..+.+. |+ +++. ++++|+||
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~--~~~-~~--~~~i~~~--~~-~~~~----~~~vDvVf 70 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGK--TYR-FN--GKTVRVQ--NV-EEFD----WSQVHIAL 70 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTC--EEE-ET--TEEEEEE--EG-GGCC----GGGCSEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCC--cee-ec--CceeEEe--cC-ChHH----hcCCCEEE
Confidence 4799999999999999999999873 56776653222111 010 11 1223332 22 2222 35799999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
-+.+.. .+...+..+.+. |+ ++|-.|+.
T Consensus 71 ~a~g~~-----------------~s~~~a~~~~~~-G~-~vId~s~~ 98 (336)
T 2r00_A 71 FSAGGE-----------------LSAKWAPIAAEA-GV-VVIDNTSH 98 (336)
T ss_dssp ECSCHH-----------------HHHHHHHHHHHT-TC-EEEECSST
T ss_pred ECCCch-----------------HHHHHHHHHHHc-CC-EEEEcCCc
Confidence 776421 133455555665 65 67788876
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0027 Score=55.87 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=27.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-CeEEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-YTVKATV 39 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 39 (322)
+++|.|.||+|++|+.+++.|.+.. .++.++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 4799999999999999999998765 5777775
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00071 Score=58.41 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=45.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.++|+|.|+| .|.+|+.+++.|++.|++|++.+|++... +.+.+. + ..... .+.+++++++|+||-
T Consensus 5 ~~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~--~~~~~~---g--~~~~~------~~~~e~~~~aDvvi~ 70 (303)
T 3g0o_A 5 GTDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQAC--ANLLAE---G--ACGAA------ASAREFAGVVDALVI 70 (303)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHT---T--CSEEE------SSSTTTTTTCSEEEE
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHH--HHHHHc---C--Ccccc------CCHHHHHhcCCEEEE
Confidence 3457899998 89999999999999999999998875332 122111 1 11111 233446678899886
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 71 ~v 72 (303)
T 3g0o_A 71 LV 72 (303)
T ss_dssp CC
T ss_pred EC
Confidence 64
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00069 Score=60.05 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-----CCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-----DGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~d 81 (322)
.+++|+|+||+|.||..+++.+...|++|+++++++.+. +.++++. .. .. .|..+.+ +.+.+ .++|
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~--~~~~~~G---a~-~~--~~~~~~~-~~~~~~~~~~~g~D 233 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKS--AFLKSLG---CD-RP--INYKTEP-VGTVLKQEYPEGVD 233 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTT---CS-EE--EETTTSC-HHHHHHHHCTTCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHH--HHHHHcC---Cc-EE--EecCChh-HHHHHHHhcCCCCC
Confidence 467999999999999999999999999999999864322 2222221 11 11 2443322 22222 2689
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+||+++|. . .....++.+++. +++|.+++.
T Consensus 234 ~vid~~g~----------~-------~~~~~~~~l~~~---G~iv~~g~~ 263 (362)
T 2c0c_A 234 VVYESVGG----------A-------MFDLAVDALATK---GRLIVIGFI 263 (362)
T ss_dssp EEEECSCT----------H-------HHHHHHHHEEEE---EEEEECCCG
T ss_pred EEEECCCH----------H-------HHHHHHHHHhcC---CEEEEEeCC
Confidence 99999862 1 122445555443 489999876
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00058 Score=62.15 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|+| +|++|..++..|++.|++|++++|++.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 3799998 899999999999999999999988753
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00028 Score=65.73 Aligned_cols=72 Identities=21% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH-hhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS-AVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~vi 84 (322)
+++++++|||| |.+|++++..|++.|.+|++.+|+..+.. +....+. .++ + ++.| ++. ....+|++|
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~-~la~~~~---~~~--~--~~~d---l~~~~~~~~DilV 429 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERAL-ELAEAIG---GKA--L--SLTD---LDNYHPEDGMVLA 429 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHH-HHHHHTT---C-C--E--ETTT---TTTC--CCSEEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHcC---Cce--e--eHHH---hhhccccCceEEE
Confidence 45679999998 79999999999999999999998753321 1111111 111 1 1212 222 123579999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
|+++.
T Consensus 430 N~agv 434 (523)
T 2o7s_A 430 NTTSM 434 (523)
T ss_dssp ECSST
T ss_pred ECCCC
Confidence 99985
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0012 Score=58.21 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=47.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEE------ccCC-CccchHHhhCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK------ANLL-EEGSFDSAVDGC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~Dl~-~~~~~~~~~~~~ 80 (322)
+|+|.|.| +|.+|+.++..|.+.|++|++++|++... +.+.+.. .+.... ..+. ...+++++++++
T Consensus 4 ~mki~iiG-~G~~G~~~a~~L~~~g~~V~~~~r~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T 1bg6_A 4 SKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRI--KEIQDRG----AIIAEGPGLAGTAHPDLLTSDIGLAVKDA 76 (359)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHHT----SEEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred cCeEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHHHhcC----CeEEeccccccccccceecCCHHHHHhcC
Confidence 37999999 59999999999999999999998865322 1121110 111110 1110 123456677889
Q ss_pred CEEEEccc
Q 020747 81 DGVFHTAS 88 (322)
Q Consensus 81 d~vih~A~ 88 (322)
|+||-+..
T Consensus 77 D~vi~~v~ 84 (359)
T 1bg6_A 77 DVILIVVP 84 (359)
T ss_dssp SEEEECSC
T ss_pred CEEEEeCC
Confidence 99997764
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00027 Score=60.45 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=31.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.++|.|+| +|.+|+.++..|++.|++|++.+|++..
T Consensus 4 ~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~ 39 (283)
T 4e12_A 4 ITNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINTDA 39 (283)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 47999998 6999999999999999999999887643
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0056 Score=50.85 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=48.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d~ 82 (322)
+||.|+|++|-+|+.+++.+.+. ++++.+...+..+.. +.+. . . .. +..|++.++.....++ ++++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~-~~~~---~-~--~D-vvIDfT~p~a~~~~~~~a~~~g~~~ 72 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLS-LLTD---G-N--TE-VVIDFTHPDVVMGNLEFLIDNGIHA 72 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTH-HHHH---T-T--CC-EEEECSCTTTHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHH-HHhc---c-C--Cc-EEEEccChHHHHHHHHHHHHcCCCE
Confidence 37999999999999999999876 899887665432211 1111 0 1 12 5678888887664433 6788
Q ss_pred EEEccc
Q 020747 83 VFHTAS 88 (322)
Q Consensus 83 vih~A~ 88 (322)
|+-..|
T Consensus 73 VigTTG 78 (245)
T 1p9l_A 73 VVGTTG 78 (245)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 775543
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00066 Score=59.91 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=23.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY 33 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~ 33 (322)
++|.|.||||++|+.|++.|.++++
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~ 27 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTL 27 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCC
T ss_pred cEEEEECCCChHHHHHHHHHhcCCC
Confidence 6899999999999999999998765
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0024 Score=56.92 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=51.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|+|+|+|+ |.+|+.+++.|.+.|++|++++..+..... ... . ..+..|..|.+.+.++.+++|.|+-
T Consensus 2 ~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~----~~~---~--~~~~~~~~d~~~l~~~~~~~d~v~~ 68 (380)
T 3ax6_A 2 KKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAG----QVA---D--EQIVAGFFDSERIEDLVKGSDVTTY 68 (380)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTG----GGS---S--EEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchh----hhC---c--eEEECCCCCHHHHHHHHhcCCEEEe
Confidence 78999996 799999999999999999998875433211 111 1 3566788888888888888999875
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00093 Score=59.30 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=48.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC---CCcChhhhhhccCCCCcEEEEEccCCCccchHHh---hCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP---NSPKTEHLRELDGATERLHLFKANLLEEGSFDSA---VDGCD 81 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~~~d 81 (322)
+++|+|+|| |.||..+++.+...|.+|++++++. .+. +...++. ...+ | .+ +..+.+ -.++|
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~--~~~~~~g-----a~~v--~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQ--TVIEETK-----TNYY--N-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHH--HHHHHHT-----CEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHH--HHHHHhC-----Ccee--c-hH-HHHHHHHHhCCCCC
Confidence 789999999 9999999999999999999999876 222 2222221 2333 5 44 222222 14789
Q ss_pred EEEEcccC
Q 020747 82 GVFHTASP 89 (322)
Q Consensus 82 ~vih~A~~ 89 (322)
+||+++|.
T Consensus 249 ~vid~~g~ 256 (366)
T 2cdc_A 249 VIIDATGA 256 (366)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999863
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0034 Score=53.01 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=47.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+++++|+|+++.+|+.++..|+++|..|++..|+. .++++.++++|+||
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI 208 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT----------------------------KDLSLYTRQADLII 208 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEE
Confidence 35789999999999999999999999999998875421 24667888999999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
...+.
T Consensus 209 ~Avg~ 213 (285)
T 3p2o_A 209 VAAGC 213 (285)
T ss_dssp ECSSC
T ss_pred ECCCC
Confidence 88874
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=55.89 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEE-EEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~ 43 (322)
++|+|.|+| +|.+|+++++.|.+.|++|++ .+|++.
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~ 58 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPA 58 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence 357899999 899999999999999999988 666553
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0026 Score=56.44 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhh-hccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLR-ELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+.+|+|+|+ |.||..++..+...|.+|+++++++.+. +... ++ +.. . ..|..+.+.+.++..++|+||+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~--~~~~~~l---Ga~-~--v~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKK--EEALKNF---GAD-S--FLVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGH--HHHHHTS---CCS-E--EEETTCHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHhc---CCc-e--EEeccCHHHHHHhhCCCCEEEE
Confidence 4679999996 9999999999999999999998875432 1222 22 111 1 2355565566666678999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
++|... . ....++.+++. .++|.+++.
T Consensus 258 ~~g~~~-----~-----------~~~~~~~l~~~---G~iv~~g~~ 284 (366)
T 1yqd_A 258 TVSAVH-----P-----------LLPLFGLLKSH---GKLILVGAP 284 (366)
T ss_dssp CCSSCC-----C-----------SHHHHHHEEEE---EEEEECCCC
T ss_pred CCCcHH-----H-----------HHHHHHHHhcC---CEEEEEccC
Confidence 987421 1 11334444442 588888875
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0012 Score=57.15 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=49.7
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
|+.+.++++|.|+| .|.+|+.+++.|++.|++|++.+|++... +.+.+. + +. ...+..++++++|
T Consensus 3 m~~~~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~--~~~~~~---g--~~-------~~~~~~e~~~~aD 67 (306)
T 3l6d_A 3 LSDESFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKA--AALVAA---G--AH-------LCESVKAALSASP 67 (306)
T ss_dssp CCCCCCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHH--HHHHHH---T--CE-------ECSSHHHHHHHSS
T ss_pred CCcccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHC---C--Ce-------ecCCHHHHHhcCC
Confidence 34444567899998 89999999999999999999998876332 122111 1 11 1235566777899
Q ss_pred EEEEcc
Q 020747 82 GVFHTA 87 (322)
Q Consensus 82 ~vih~A 87 (322)
+||-+.
T Consensus 68 vVi~~v 73 (306)
T 3l6d_A 68 ATIFVL 73 (306)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 998765
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0022 Score=54.35 Aligned_cols=73 Identities=23% Similarity=0.222 Sum_probs=47.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++++++|+|+ |.+|++++..|.+.|. +|++..|+..+.. +...++.. ..+..+ ++ +++.. .++|+||
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~-~la~~~~~--~~~~~~--~~---~~l~~--~~~DivI 186 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKAL-ALRNELDH--SRLRIS--RY---EALEG--QSFDIVV 186 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHH-HHHHHHCC--TTEEEE--CS---GGGTT--CCCSEEE
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHhcc--CCeeEe--eH---HHhcc--cCCCEEE
Confidence 45789999996 8899999999999995 8999988764321 11122211 123332 22 22222 6789999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
++...
T Consensus 187 naTp~ 191 (272)
T 3pwz_A 187 NATSA 191 (272)
T ss_dssp ECSSG
T ss_pred ECCCC
Confidence 98643
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0014 Score=57.70 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=61.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH---Hhh--CCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD---SAV--DGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~--~~~d~v 83 (322)
++++|+||+|.||...+..+...|.+|+++++++.+. +.++++. .. .. .|..+.+..+ ++. .++|+|
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~--~~~~~~G---a~-~~--~~~~~~~~~~~v~~~~~~~g~D~v 237 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI--ALLKDIG---AA-HV--LNEKAPDFEATLREVMKAEQPRIF 237 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH--HHHHHHT---CS-EE--EETTSTTHHHHHHHHHHHHCCCEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHcC---CC-EE--EECCcHHHHHHHHHHhcCCCCcEE
Confidence 6899999999999999999999999999999876443 3333332 11 11 2444433222 222 279999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
|+++|.. .+...++.++. -++++.+++.
T Consensus 238 id~~g~~-----------------~~~~~~~~l~~---~G~iv~~G~~ 265 (349)
T 3pi7_A 238 LDAVTGP-----------------LASAIFNAMPK---RARWIIYGRL 265 (349)
T ss_dssp EESSCHH-----------------HHHHHHHHSCT---TCEEEECCCS
T ss_pred EECCCCh-----------------hHHHHHhhhcC---CCEEEEEecc
Confidence 9998631 01234455443 2589988865
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0019 Score=55.44 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=47.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
.|+|.|+| .|.+|+.+++.|++.||+|++.+|++.... .+.+. .++ -..+++++++ +|+||-+.
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~--~~~~~-----g~~-------~~~~~~~~~~-aDvvi~~v 78 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMT--PLAEA-----GAT-------LADSVADVAA-ADLIHITV 78 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSH--HHHHT-----TCE-------ECSSHHHHTT-SSEEEECC
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHH--HHHHC-----CCE-------EcCCHHHHHh-CCEEEEEC
Confidence 46899998 899999999999999999999999876542 22221 111 1235667778 99999765
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0022 Score=56.64 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=32.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|++|+|.|+| .|.+|+.+++.|++.|++|++.+|++.
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~ 56 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVN 56 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3458999998 899999999999999999999988753
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0025 Score=54.27 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=47.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++++++|+|+ |.+|++++..|.+.|. +|++..|+.++.. .....+.. ...+..... ++ +.+++|+||
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~-~la~~~~~-~~~~~~~~~-----~~---l~~~aDiII 192 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAE-QLAELVAA-YGEVKAQAF-----EQ---LKQSYDVII 192 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHH-HHHHHHGG-GSCEEEEEG-----GG---CCSCEEEEE
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHH-HHHHHhhc-cCCeeEeeH-----HH---hcCCCCEEE
Confidence 45789999996 8899999999999996 8999998764331 11111211 112333321 11 225789999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
++...
T Consensus 193 naTp~ 197 (281)
T 3o8q_A 193 NSTSA 197 (281)
T ss_dssp ECSCC
T ss_pred EcCcC
Confidence 88643
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0023 Score=57.79 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=31.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
..+|+|.|+| +|++|..++..|++ |++|++.+|++.
T Consensus 34 ~~~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~~~ 69 (432)
T 3pid_A 34 SEFMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIVQA 69 (432)
T ss_dssp -CCCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence 3457999998 79999999999987 999999998764
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0044 Score=53.64 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=50.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|-||+.+++.|...|++|++.+|++.... .+....+ ..+++++++++|+|+.
T Consensus 137 l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------~~~~~~~----~~~l~ell~~aDiV~l 199 (315)
T 3pp8_A 137 REEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWP------------GVESYVG----REELRAFLNQTRVLIN 199 (315)
T ss_dssp STTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCT------------TCEEEES----HHHHHHHHHTCSEEEE
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhh------------hhhhhcc----cCCHHHHHhhCCEEEE
Confidence 4578999999 899999999999999999999998765321 1121111 2567888999999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 200 ~~P 202 (315)
T 3pp8_A 200 LLP 202 (315)
T ss_dssp CCC
T ss_pred ecC
Confidence 653
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.006 Score=54.21 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh--CCCCEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV--DGCDGVF 84 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~--~~~d~vi 84 (322)
++.+|+|+||+|.||...+..+...|.+|+++++ ..+ .+.++++. .. . ..|..+.+..+.+. .++|+||
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~--~~~~~~lG---a~-~--v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDA--SELVRKLG---AD-D--VIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGG--HHHHHHTT---CS-E--EEETTSSCHHHHHHTSCCBSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHH--HHHHHHcC---CC-E--EEECCchHHHHHHhhcCCCCEEE
Confidence 4679999999999999999999999999998873 222 23333332 11 1 12444433333333 3689999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
+++|.
T Consensus 254 d~~g~ 258 (375)
T 2vn8_A 254 DNVGG 258 (375)
T ss_dssp ESSCT
T ss_pred ECCCC
Confidence 99873
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=44.87 Aligned_cols=85 Identities=24% Similarity=0.159 Sum_probs=54.7
Q ss_pred CcEEEEECCc---chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 8 EKVVCVTGAS---GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.++|.|.|++ |.+|..+++.|.+.||+|+.+ ++... + + ..+.-+.+++++.+.+|.++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V--np~~~------~-------i----~G~~~y~sl~~l~~~vDlvv 82 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--NPKYE------E-------V----LGRKCYPSVLDIPDKIEVVD 82 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--CTTCS------E-------E----TTEECBSSGGGCSSCCSEEE
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE--CCCCC------e-------E----CCeeccCCHHHcCCCCCEEE
Confidence 4789999998 899999999999999986554 33221 0 0 11222334455555789887
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
-+.. -.....+++.|.+. |++.+++.+
T Consensus 83 i~vp-----------------~~~~~~vv~~~~~~-gi~~i~~~~ 109 (144)
T 2d59_A 83 LFVK-----------------PKLTMEYVEQAIKK-GAKVVWFQY 109 (144)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHH-TCSEEEECT
T ss_pred EEeC-----------------HHHHHHHHHHHHHc-CCCEEEECC
Confidence 5531 12234567777776 888776543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=59.81 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=31.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.|+|.|+| +|++|..++..|++.|++|++++|++.
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G~~V~~~d~~~~ 42 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIGHDVFCLDVDQA 42 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 37899998 999999999999999999999998753
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0062 Score=51.38 Aligned_cols=57 Identities=25% Similarity=0.208 Sum_probs=47.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+++++|.|+++.+|+.++..|+++|.+|++..|+. .++++.++++|+||
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI 209 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT----------------------------TDLKSHTTKADILI 209 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------------hhHHHhcccCCEEE
Confidence 35689999999999999999999999999988764321 24667888999999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
...+.
T Consensus 210 ~Avg~ 214 (285)
T 3l07_A 210 VAVGK 214 (285)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 88864
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0051 Score=52.89 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=51.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+++|+|.| .|.+|+.+++.|...|.+|++.+|+..+. +.+.+. .++.+ +..+++++++++|+|+
T Consensus 154 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~--~~~~~~-----g~~~~-----~~~~l~~~l~~aDvVi 220 (300)
T 2rir_A 154 TIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHL--ARITEM-----GLVPF-----HTDELKEHVKDIDICI 220 (300)
T ss_dssp CSTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHT-----TCEEE-----EGGGHHHHSTTCSEEE
T ss_pred CCCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHC-----CCeEE-----chhhHHHHhhCCCEEE
Confidence 34678999999 59999999999999999999999875321 111111 12222 2346778889999999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
.+...
T Consensus 221 ~~~p~ 225 (300)
T 2rir_A 221 NTIPS 225 (300)
T ss_dssp ECCSS
T ss_pred ECCCh
Confidence 88753
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0034 Score=54.55 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=47.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|+|.|+| .|.+|+.+++.|++.|++|++.+|++... +.+... .+. -..+.+++++++|+||-+
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~-----~~l~~~--g~~-------~~~~~~e~~~~aDvVi~~ 94 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARA-----ASLAAL--GAT-------IHEQARAAARDADIVVSM 94 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHH-----HHHHTT--TCE-------EESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHH-----HHHHHC--CCE-------eeCCHHHHHhcCCEEEEE
Confidence 347999998 79999999999999999999998875332 222211 111 124567788899999866
Q ss_pred c
Q 020747 87 A 87 (322)
Q Consensus 87 A 87 (322)
.
T Consensus 95 v 95 (320)
T 4dll_A 95 L 95 (320)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0022 Score=54.79 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=46.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|+| +|.+|+.+++.|.+.|++|++.+|++... +.+.+. ++. -..+.+++++++|+||-+.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~--~~~~~~-----g~~-------~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKA--EELAAL-----GAE-------RAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGG--HHHHHT-----TCE-------ECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHH--HHHHHC-----CCe-------ecCCHHHHHhcCCEEEEEc
Confidence 6899999 79999999999999999999998876443 222211 111 1235666777889998664
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0062 Score=57.25 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=55.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~A 87 (322)
++++|.|+ |-+|+++++.|.+.|++|+++++++..... + . ..+.||.+|++.++++ ++++|.+|-+.
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~-----~----~--~~i~gD~t~~~~L~~agi~~ad~vi~~~ 416 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCN-----D----H--VVVYGDATVGQTLRQAGIDRASGIIVTT 416 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCC-----S----S--CEEESCSSSSTHHHHHTTTSCSEEEECC
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhh-----c----C--CEEEeCCCCHHHHHhcCccccCEEEEEC
Confidence 68999995 999999999999999999999998765532 1 1 7899999999998876 56889988553
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0071 Score=52.72 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~ 42 (322)
++|.|.||||++|+.|++.|.+. .+++..+.++.
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~ 39 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSA 39 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecC
Confidence 78999999999999999999985 46887775544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0018 Score=56.78 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhhCCCCEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAVDGCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~~~d~v 83 (322)
.+++|+|+|| |.+|..+++.+...|.+|++++|++.+. +..+++. .. ...|..+.+. +.++..++|+|
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~--~~~~~lG---a~---~~~d~~~~~~~~~~~~~~~~~d~v 234 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKL--ELAKELG---AD---LVVNPLKEDAAKFMKEKVGGVHAA 234 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHTT---CS---EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHCC---CC---EEecCCCccHHHHHHHHhCCCCEE
Confidence 4679999999 7799999999999999999998865332 2222221 11 1246655332 22222578999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
|+++|.. . .....++.+++. ++++.+++.
T Consensus 235 id~~g~~---------~-------~~~~~~~~l~~~---G~~v~~g~~ 263 (339)
T 1rjw_A 235 VVTAVSK---------P-------AFQSAYNSIRRG---GACVLVGLP 263 (339)
T ss_dssp EESSCCH---------H-------HHHHHHHHEEEE---EEEEECCCC
T ss_pred EECCCCH---------H-------HHHHHHHHhhcC---CEEEEeccc
Confidence 9998631 0 123444554442 488888764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0038 Score=56.71 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=48.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEE-E-----EEccCCCccchHHhhCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLH-L-----FKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~-~-----~~~Dl~~~~~~~~~~~~~ 80 (322)
-+|.|+| +|++|..++..|++.||+|++.+|++.... .+.+-.. ..+.+. . ..+.+.--.+..++++++
T Consensus 9 ~~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~a 85 (446)
T 4a7p_A 9 VRIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDA 85 (446)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTC
T ss_pred eEEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcC
Confidence 4899999 899999999999999999999999876542 2222100 000000 0 001111123456678899
Q ss_pred CEEEEccc
Q 020747 81 DGVFHTAS 88 (322)
Q Consensus 81 d~vih~A~ 88 (322)
|+||-+.+
T Consensus 86 Dvvii~Vp 93 (446)
T 4a7p_A 86 DAVFIAVG 93 (446)
T ss_dssp SEEEECCC
T ss_pred CEEEEEcC
Confidence 99997754
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0091 Score=54.16 Aligned_cols=94 Identities=11% Similarity=0.177 Sum_probs=62.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-C---eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCC--c-cchHHhhCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-Y---TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE--E-GSFDSAVDGCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~-~~~~~~~~~~d 81 (322)
++|+|+| .|.||+.+++.|++++ + +|++.+...... +..... .+.+...++++ . +.+++++++.|
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~~~~-----g~~~~~~~Vdadnv~~~l~aLl~~~D 85 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVAQQY-----GVSFKLQQITPQNYLEVIGSTLEEND 85 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHHHHH-----TCEEEECCCCTTTHHHHTGGGCCTTC
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHHhhc-----CCceeEEeccchhHHHHHHHHhcCCC
Confidence 6899999 9999999999999974 4 577776554332 111111 23455555544 3 33667887779
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+|||++-+. . ...++++|.+. |+ -|++++
T Consensus 86 vVIN~s~~~------~-----------~l~Im~aclea-Gv---~YlDTa 114 (480)
T 2ph5_A 86 FLIDVSIGI------S-----------SLALIILCNQK-GA---LYINAA 114 (480)
T ss_dssp EEEECCSSS------C-----------HHHHHHHHHHH-TC---EEEESS
T ss_pred EEEECCccc------c-----------CHHHHHHHHHc-CC---CEEECC
Confidence 999865221 0 34789999998 64 466665
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0037 Score=54.06 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+|+|.|+| .|.+|+.+++.|++.|++|++.+|++... +.+.+. .+. -..+.+++++++|+||-+
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~--~~l~~~-----g~~-------~~~~~~~~~~~aDvvi~~ 84 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKC--DELVEH-----GAS-------VCESPAEVIKKCKYTIAM 84 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGG--HHHHHT-----TCE-------ECSSHHHHHHHCSEEEEC
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHH--HHHHHC-----CCe-------EcCCHHHHHHhCCEEEEE
Confidence 357999998 89999999999999999999998876443 222211 111 123456677788998866
Q ss_pred c
Q 020747 87 A 87 (322)
Q Consensus 87 A 87 (322)
.
T Consensus 85 v 85 (310)
T 3doj_A 85 L 85 (310)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0061 Score=51.44 Aligned_cols=57 Identities=28% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+++++|.|++|.+|+.++..|+++|.+|++..++. .++++.++.+|+||
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T----------------------------~~L~~~~~~ADIVI 209 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT----------------------------RDLADHVSRADLVV 209 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC----------------------------SCHHHHHHTCSEEE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC----------------------------cCHHHHhccCCEEE
Confidence 35689999999999999999999999999998874321 24567788899999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
...+.
T Consensus 210 ~Avg~ 214 (286)
T 4a5o_A 210 VAAGK 214 (286)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 88764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0024 Score=55.46 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=52.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+.+|+|+||+|.+|...+..+...|.+|+++++... .+..+++.. . . ..|..+.+.+.+.++++|+||.+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~---~~~~~~lGa---~-~--~i~~~~~~~~~~~~~g~D~v~d~ 222 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRN---HAFLKALGA---E-Q--CINYHEEDFLLAISTPVDAVIDL 222 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHH---HHHHHHHTC---S-E--EEETTTSCHHHHCCSCEEEEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccch---HHHHHHcCC---C-E--EEeCCCcchhhhhccCCCEEEEC
Confidence 4679999999999999999999999999998875321 233333321 1 1 23555544366677889999998
Q ss_pred cc
Q 020747 87 AS 88 (322)
Q Consensus 87 A~ 88 (322)
+|
T Consensus 223 ~g 224 (321)
T 3tqh_A 223 VG 224 (321)
T ss_dssp SC
T ss_pred CC
Confidence 86
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0039 Score=51.91 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
+.+++|.|+| +|.+|+++++.|++.|++|++.+|++.
T Consensus 17 ~~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~ 53 (245)
T 3dtt_A 17 FQGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPK 53 (245)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 4468999997 999999999999999999999998764
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0021 Score=57.84 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
..+++|+|+|+ |.+|+.+++.|...|. +|++.+|+..+.. +....+. ... .+.+++.+++.++|+||
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~-~la~~~g-----~~~-----~~~~~l~~~l~~aDvVi 232 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV-ELARDLG-----GEA-----VRFDELVDHLARSDVVV 232 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH-HHHHHHT-----CEE-----CCGGGHHHHHHTCSEEE
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHcC-----Cce-----ecHHhHHHHhcCCCEEE
Confidence 45789999997 9999999999999998 8999988653321 1111111 111 12345677778999999
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
.+.+
T Consensus 233 ~at~ 236 (404)
T 1gpj_A 233 SATA 236 (404)
T ss_dssp ECCS
T ss_pred EccC
Confidence 9875
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=58.31 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRD 41 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 41 (322)
++++|.|.||||++|+.|++.|.+.. .++..+..+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~ 41 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGK 41 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEES
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECc
Confidence 45799999999999999999887765 466666544
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=58.31 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRD 41 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~ 41 (322)
++++|.|.||||++|+.|++.|.+.. .++..+..+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~ 41 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGK 41 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEES
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECc
Confidence 45799999999999999999887765 466666544
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.013 Score=53.50 Aligned_cols=115 Identities=19% Similarity=0.095 Sum_probs=69.2
Q ss_pred CcEEEEECCcc-hhHHHHHHHHHHC----CCeEEEEEeCCCCcCh--hhhhhc---cCCCCcEEEEEccCCCccchHHhh
Q 020747 8 EKVVCVTGASG-FVASWLVKLLLQR----GYTVKATVRDPNSPKT--EHLREL---DGATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 8 ~~~ilVtGatG-~iG~~l~~~L~~~----g~~V~~~~r~~~~~~~--~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
+++|.|+||.+ ..|.+++..|++. |++|...++++..... ...... .....++.. ..++++++
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~-------ttD~~eal 75 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK-------TMNLDDVI 75 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE-------ESCHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEE-------ECCHHHHh
Confidence 37899999866 5789999999864 8999999997643221 111110 011122222 13456678
Q ss_pred CCCCEEEEcccCcc-------------cCC----CC--C------cchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 78 DGCDGVFHTASPVI-------------FLS----DN--P------QADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 78 ~~~d~vih~A~~~~-------------~~~----~~--~------~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+++|+||..++... ... .+ . -......|+...+.+++.+.+. +...++...|
T Consensus 76 ~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~-~P~A~ii~~T 152 (480)
T 1obb_A 76 IDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAA 152 (480)
T ss_dssp TTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred CCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 99999999986310 000 01 0 0113456888999999999988 4444444443
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0026 Score=54.62 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=45.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
.|+|.|+| +|.+|+.+++.|.+.|++|++.+|++.. ...+... .+.. ..+.+++++++|+||-+.
T Consensus 4 ~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~-----~~~~~~~--g~~~-------~~~~~~~~~~~D~vi~~v 68 (301)
T 3cky_A 4 SIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDLMEAN-----VAAVVAQ--GAQA-------CENNQKVAAASDIIFTSL 68 (301)
T ss_dssp CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECSSHHH-----HHHHHTT--TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHH-----HHHHHHC--CCee-------cCCHHHHHhCCCEEEEEC
Confidence 46899998 7999999999999999999988876532 2222111 1221 124555667789998765
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0026 Score=57.99 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.+++|+|+||+|.||...+..+...|.+|+++++++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~ 255 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA 255 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 468999999999999999999999999999998754
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0056 Score=53.12 Aligned_cols=66 Identities=9% Similarity=0.167 Sum_probs=50.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|-||+.+++.|...|++|++.+|+...... . . .. ....+++++++++|+|+.
T Consensus 138 l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--~-------~--~~-----~~~~~l~ell~~aDvV~l 200 (324)
T 3hg7_A 138 LKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRERAG--F-------D--QV-----YQLPALNKMLAQADVIVS 200 (324)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCTT--C-------S--EE-----ECGGGHHHHHHTCSEEEE
T ss_pred cccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHhhh--h-------h--cc-----cccCCHHHHHhhCCEEEE
Confidence 4579999999 8999999999999999999999887633211 0 0 01 124578889999999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 201 ~lP 203 (324)
T 3hg7_A 201 VLP 203 (324)
T ss_dssp CCC
T ss_pred eCC
Confidence 764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0039 Score=52.54 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=45.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+++++|+|+ |..|++++..|.+.|.+|++..|+.++.. .+.++. +... ++ +++ .++|+|||+.
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~--~la~~~-----~~~~--~~---~~l----~~~DiVInaT 180 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLD--FFQRLG-----CDCF--ME---PPK----SAFDLIINAT 180 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHH--HHHHHT-----CEEE--SS---CCS----SCCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH--HHHHCC-----CeEe--cH---HHh----ccCCEEEEcc
Confidence 589999995 99999999999999999999999876542 222211 2222 22 222 2789999886
Q ss_pred cC
Q 020747 88 SP 89 (322)
Q Consensus 88 ~~ 89 (322)
..
T Consensus 181 p~ 182 (269)
T 3phh_A 181 SA 182 (269)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0033 Score=53.61 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=65.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh--------------------hhhhhccCCCCcEEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT--------------------EHLRELDGATERLHLFKA 65 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--------------------~~~~~~~~~~~~~~~~~~ 65 (322)
+..+|+|.| .|.+|+++++.|+..|. ++.++|.+.-+..+ +.+.+++. ..+++.+..
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP-~v~v~~~~~ 112 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINP-DVLFEVHNY 112 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCT-TSEEEEECC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCC-CcEEEEecc
Confidence 357999999 78999999999999995 67777765411111 11111111 235666777
Q ss_pred cCCCccchHHhh-----------CCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 66 NLLEEGSFDSAV-----------DGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 66 Dl~~~~~~~~~~-----------~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
++++.+.++.++ +++|+||.+. ++ ...-..+-++|.+. ++ .+|+.+..
T Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~--------Dn--------~~~R~~in~~c~~~-~~-Pli~~gv~ 171 (292)
T 3h8v_A 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCV--------DN--------FEARMTINTACNEL-GQ-TWMESGVS 171 (292)
T ss_dssp CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC--------SS--------HHHHHHHHHHHHHH-TC-CEEEEEEC
T ss_pred cCCcHHHHHHHhhhhcccccccCCCCCEEEECC--------cc--------hhhhhHHHHHHHHh-CC-CEEEeeee
Confidence 777655566554 5889999764 22 22223566777776 54 56665543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0053 Score=53.19 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=45.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH-hhCCCCEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS-AVDGCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~v 83 (322)
+.|+|.|+| .|.+|+.+++.|.+.|+ +|++.+|++... +...+. +. +.... .+.++ +++++|+|
T Consensus 32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~--~~a~~~---G~-~~~~~------~~~~~~~~~~aDvV 98 (314)
T 3ggo_A 32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDL---GI-IDEGT------TSIAKVEDFSPDFV 98 (314)
T ss_dssp SCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHT---TS-CSEEE------SCTTGGGGGCCSEE
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHH--HHHHHC---CC-cchhc------CCHHHHhhccCCEE
Confidence 347999999 89999999999999999 999998875322 111111 10 00011 22344 67789999
Q ss_pred EEcc
Q 020747 84 FHTA 87 (322)
Q Consensus 84 ih~A 87 (322)
|-+.
T Consensus 99 ilav 102 (314)
T 3ggo_A 99 MLSS 102 (314)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9664
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=55.46 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=45.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|+| .|.+|+.+++.|++.||+|++.+|++... +.+.+. .+. -..+.+++++++|+||-+.
T Consensus 2 ~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~--~~~~~~-----g~~-------~~~~~~~~~~~advvi~~v 65 (287)
T 3pdu_A 2 TTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKC--APLVAL-----GAR-------QASSPAEVCAACDITIAML 65 (287)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGG--HHHHHH-----TCE-------ECSCHHHHHHHCSEEEECC
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHH--HHHHHC-----CCe-------ecCCHHHHHHcCCEEEEEc
Confidence 5799998 89999999999999999999999876443 222211 111 1234566777889988665
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0061 Score=51.84 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=46.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH--HhhCCCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD--SAVDGCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~--~~~~~~d~ 82 (322)
...+++++|.|++|.+|+.++..|+++|.+|++..|+.. +++ +.++++|+
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~----------------------------~l~l~~~~~~ADI 213 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS----------------------------TEDMIDYLRTADI 213 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC----------------------------HHHHHHHHHTCSE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC----------------------------CchhhhhhccCCE
Confidence 356899999999999999999999999999988765321 233 67888999
Q ss_pred EEEcccC
Q 020747 83 VFHTASP 89 (322)
Q Consensus 83 vih~A~~ 89 (322)
||...+.
T Consensus 214 VI~Avg~ 220 (300)
T 4a26_A 214 VIAAMGQ 220 (300)
T ss_dssp EEECSCC
T ss_pred EEECCCC
Confidence 9988874
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=55.20 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=45.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|+| +|.+|+.++..|.+.|++|++.+|++... +.+.+. .+.. ..+.+++++++|+||.+.
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~--~~~~~~-----g~~~-------~~~~~~~~~~~D~vi~~v 69 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAI--ADVIAA-----GAET-------ASTAKAIAEQCDVIITML 69 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHT-----TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHHHHC-----CCee-------cCCHHHHHhCCCEEEEEC
Confidence 5899999 79999999999999999999888765322 112111 1111 234555677899999775
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0042 Score=54.95 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=51.0
Q ss_pred cEEEEECCcchhHHHHHHHHH-HCCC---eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLL-QRGY---TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~-~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++|.|.||||++|+.+++.|+ ++++ +++.+..+ + ... .+.... +. .....|..+++. ++++|+||
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s-~G~-~v~~~~--g~--~i~~~~~~~~~~----~~~~DvVf 70 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-Q-LGQ-AAPSFG--GT--TGTLQDAFDLEA----LKALDIIV 70 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-S-TTS-BCCGGG--TC--CCBCEETTCHHH----HHTCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-C-CCC-CccccC--CC--ceEEEecCChHH----hcCCCEEE
Confidence 589999999999999999544 4554 34444433 2 111 111111 11 111223333333 35899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSI 131 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~ 131 (322)
-+.+. ..+...+..+.+. |++ .+|=.||.
T Consensus 71 ~a~g~-----------------~~s~~~a~~~~~~-G~k~vVID~ss~ 100 (367)
T 1t4b_A 71 TCQGG-----------------DYTNEIYPKLRES-GWQGYWIDAASS 100 (367)
T ss_dssp ECSCH-----------------HHHHHHHHHHHHT-TCCCEEEECSST
T ss_pred ECCCc-----------------hhHHHHHHHHHHC-CCCEEEEcCChh
Confidence 77652 2234455566665 664 45545554
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0067 Score=51.97 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=50.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|+|.| .|.||+.+++.|...|.+|++.+|+..+. +...+. .+..+ +.++++++++++|+|+.
T Consensus 153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~--~~~~~~-----g~~~~-----~~~~l~~~l~~aDvVi~ 219 (293)
T 3d4o_A 153 IHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLL--ARIAEM-----GMEPF-----HISKAAQELRDVDVCIN 219 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHT-----TSEEE-----EGGGHHHHTTTCSEEEE
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHH--HHHHHC-----CCeec-----ChhhHHHHhcCCCEEEE
Confidence 4678999999 69999999999999999999999875321 111111 12222 23467788899999998
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 220 ~~p 222 (293)
T 3d4o_A 220 TIP 222 (293)
T ss_dssp CCS
T ss_pred CCC
Confidence 863
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0068 Score=50.65 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=62.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-----------------hhh-hhccCC--CCcEEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-----------------EHL-RELDGA--TERLHLFKAN 66 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------------~~~-~~~~~~--~~~~~~~~~D 66 (322)
.++|+|.|+ |.+|+++++.|+..|. ++++++++.-.... +.+ +.+... ..+++.+..+
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 106 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 106 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 579999995 6699999999999996 67777765321111 000 001111 2235555555
Q ss_pred CCCccchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 67 l~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+++ +.+.++++++|+||.+.. + ...-..+.++|++. + ..+|+.+..
T Consensus 107 ~~~-~~~~~~~~~~DvVi~~~d--------~--------~~~r~~l~~~~~~~-~-~p~i~~~~~ 152 (251)
T 1zud_1 107 LTG-EALKDAVARADVVLDCTD--------N--------MATRQEINAACVAL-N-TPLITASAV 152 (251)
T ss_dssp CCH-HHHHHHHHHCSEEEECCS--------S--------HHHHHHHHHHHHHT-T-CCEEEEEEE
T ss_pred CCH-HHHHHHHhcCCEEEECCC--------C--------HHHHHHHHHHHHHh-C-CCEEEEecc
Confidence 543 456778888999997741 1 11223455666665 5 357776654
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.004 Score=57.01 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CC-eEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GY-TVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~ 43 (322)
+.|+|.|+| +|++|..++..|++. || +|++.+|++.
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 457999998 899999999999999 99 9999999876
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0054 Score=51.46 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++++|.|+++-+|+.++..|+++|.+|++..++. .++++.++++|+||.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t----------------------------~~L~~~~~~ADIVI~ 199 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT----------------------------KDIGSMTRSSKIVVV 199 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------SCHHHHHHHSSEEEE
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc----------------------------ccHHHhhccCCEEEE
Confidence 4579999999999999999999999999998875421 345667788899998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
..+.
T Consensus 200 Avg~ 203 (276)
T 3ngx_A 200 AVGR 203 (276)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0056 Score=49.64 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=30.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.+++|.|+| +|.+|+.++..|.+.|++|++.+|++
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~ 52 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKD 52 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 357899999 89999999999999999999887754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0033 Score=55.15 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=47.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhhC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAVD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~d 81 (322)
.+.+|+|+||+|.||...+..+...|.+|+++ +++.+. +..+++. ... .| .+.+. +.++.. ++|
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~--~~~~~lG-----a~~--i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDL--EYVRDLG-----ATP--ID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHH--HHHHHHT-----SEE--EE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHH--HHHHHcC-----CCE--ec-cCCCHHHHHHHHhcCCCce
Confidence 46899999999999999999999999999988 554321 2333322 122 33 33222 222222 689
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||+++|
T Consensus 219 ~vid~~g 225 (343)
T 3gaz_A 219 LVYDTLG 225 (343)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999986
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0082 Score=54.90 Aligned_cols=99 Identities=18% Similarity=0.328 Sum_probs=67.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
.++|+|.| .|-||.++++.| +++++|.++.+++.++. .+.+ ..++...+.||-+|++-+++. ++++|++|-+
T Consensus 235 ~~~v~I~G-gG~ig~~lA~~L-~~~~~v~iIE~d~~r~~--~la~---~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~ 307 (461)
T 4g65_A 235 YRRIMIVG-GGNIGASLAKRL-EQTYSVKLIERNLQRAE--KLSE---ELENTIVFCGDAADQELLTEENIDQVDVFIAL 307 (461)
T ss_dssp CCEEEEEC-CSHHHHHHHHHH-TTTSEEEEEESCHHHHH--HHHH---HCTTSEEEESCTTCHHHHHHTTGGGCSEEEEC
T ss_pred ccEEEEEc-chHHHHHHHHHh-hhcCceEEEecCHHHHH--HHHH---HCCCceEEeccccchhhHhhcCchhhcEEEEc
Confidence 36888888 789999999997 45699999988765542 2222 124578899999999887755 6789999844
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
. .++ +.|+..++. +++. |++++|-.-.
T Consensus 308 T-------~~D-----e~Ni~~~ll----Ak~~-gv~kvIa~vn 334 (461)
T 4g65_A 308 T-------NED-----ETNIMSAML----AKRM-GAKKVMVLIQ 334 (461)
T ss_dssp C-------SCH-----HHHHHHHHH----HHHT-TCSEEEEECS
T ss_pred c-------cCc-----HHHHHHHHH----HHHc-CCcccccccc
Confidence 3 222 345544433 3454 8877665443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0043 Score=51.90 Aligned_cols=67 Identities=30% Similarity=0.378 Sum_probs=48.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++ +++|+|+ |..|++++..|.+.|. +|++.+|+..+ .+++.. .+... ..+++.++++++|+||+
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~k-----a~~la~---~~~~~-----~~~~~~~~~~~aDiVIn 172 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIER-----AKALDF---PVKIF-----SLDQLDEVVKKAKSLFN 172 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHH-----HHTCCS---SCEEE-----EGGGHHHHHHTCSEEEE
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHH-----HHHHHH---HcccC-----CHHHHHhhhcCCCEEEE
Confidence 45 8999995 9999999999999998 89999987532 222221 11111 23456677889999998
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 173 atp 175 (253)
T 3u62_A 173 TTS 175 (253)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0037 Score=57.10 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=69.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC-----CCeEEEEEeCCCCcCh--hhhhhc---cCCCCcEEEEEccCCCccchHHhh
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR-----GYTVKATVRDPNSPKT--EHLREL---DGATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~-----g~~V~~~~r~~~~~~~--~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
.+||.|+||.+..|.+++..|+++ +.+|...++++..... +..... .....++.. ..++++++
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~-------t~D~~eal 100 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-------TTDPEEAF 100 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-------ESCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEE-------ECCHHHHH
Confidence 469999998776688899889988 6789999987643221 000111 011222222 13456788
Q ss_pred CCCCEEEEcccCccc--CCCCC-----------------cchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 78 DGCDGVFHTASPVIF--LSDNP-----------------QADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 78 ~~~d~vih~A~~~~~--~~~~~-----------------~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
+++|+||..++.... ...+. -.....-|+...+.+++.+.+. +.. .+|.+|
T Consensus 101 ~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~-~P~A~ii~~T 171 (472)
T 1u8x_X 101 TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY-SPDAWMLNYS 171 (472)
T ss_dssp SSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred cCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 999999998875211 00000 0112456788888999999888 444 444444
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0031 Score=55.71 Aligned_cols=74 Identities=22% Similarity=0.153 Sum_probs=50.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~vih 85 (322)
.+.+|+|+|+ |.+|...+..+...|.+|+++++++.+. +.++++.. . .. .|..+. +..+++..++|+||.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~--~~~~~lGa---~-~v--~~~~~~~~~~~~~~~~~D~vid 249 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR--EDAMKMGA---D-HY--IATLEEGDWGEKYFDTFDLIVV 249 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH--HHHHHHTC---S-EE--EEGGGTSCHHHHSCSCEEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH--HHHHHcCC---C-EE--EcCcCchHHHHHhhcCCCEEEE
Confidence 4679999999 9999999998888999999999876553 33333221 1 11 233333 223333357899999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
++|.
T Consensus 250 ~~g~ 253 (360)
T 1piw_A 250 CASS 253 (360)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9874
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0015 Score=55.06 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=44.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+|+|.|+|+ |.+|+.++..|.+.|++ |.+.+|++... +.+.+.. .+.. ..+++++++++|+||-
T Consensus 9 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~--~~~~~~~----g~~~-------~~~~~~~~~~~Dvvi~ 74 (266)
T 3d1l_A 9 EDTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESA--RELAQKV----EAEY-------TTDLAEVNPYAKLYIV 74 (266)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHH--HHHHHHT----TCEE-------ESCGGGSCSCCSEEEE
T ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHH--HHHHHHc----CCce-------eCCHHHHhcCCCEEEE
Confidence 3468999995 99999999999999998 77887765322 1111110 1221 1234456678999996
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 75 av 76 (266)
T 3d1l_A 75 SL 76 (266)
T ss_dssp CC
T ss_pred ec
Confidence 64
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0039 Score=52.91 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+++|+|+| +|.+|+++++.|.+.|++|++.+|+.++ .+.+.... .+.. .+ ++.++++++|+||++
T Consensus 128 ~~~~v~iiG-aG~~g~aia~~L~~~g~~V~v~~r~~~~-----~~~l~~~~-g~~~-----~~--~~~~~~~~aDiVi~a 193 (275)
T 2hk9_A 128 KEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEK-----AIKLAQKF-PLEV-----VN--SPEEVIDKVQVIVNT 193 (275)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSHHH-----HHHHTTTS-CEEE-----CS--CGGGTGGGCSEEEEC
T ss_pred CCCEEEEEC-chHHHHHHHHHHHHcCCEEEEEECCHHH-----HHHHHHHc-CCee-----eh--hHHhhhcCCCEEEEe
Confidence 468999999 5899999999999999999888886532 22221111 1221 11 345566789999988
Q ss_pred ccC
Q 020747 87 ASP 89 (322)
Q Consensus 87 A~~ 89 (322)
...
T Consensus 194 tp~ 196 (275)
T 2hk9_A 194 TSV 196 (275)
T ss_dssp SST
T ss_pred CCC
Confidence 754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0041 Score=57.27 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~ 43 (322)
++|+|.|+| +|++|..++..|++. |++|++++|++.
T Consensus 8 ~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~~D~~~~ 45 (481)
T 2o3j_A 8 KVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTVVDMNTA 45 (481)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 457999998 899999999999998 799999988753
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0048 Score=53.59 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=49.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+|+|.|.| .|.||+.+++.|...|++|++.+|+...... . . ..+. ..+++++++++|+|+.
T Consensus 135 l~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--~-------~--~~~~-----~~~l~ell~~aDvV~l 197 (324)
T 3evt_A 135 LTGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPADH--F-------H--ETVA-----FTATADALATANFIVN 197 (324)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCTT--C-------S--EEEE-----GGGCHHHHHHCSEEEE
T ss_pred ccCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhHh--H-------h--hccc-----cCCHHHHHhhCCEEEE
Confidence 4579999999 8999999999999999999999987644311 0 0 1111 2456778889999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 198 ~lP 200 (324)
T 3evt_A 198 ALP 200 (324)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=56.09 Aligned_cols=66 Identities=23% Similarity=0.193 Sum_probs=45.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC-CCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP-NSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+|+|.|+| .|.+|+.+++.|++.|+ +|++.+|++ ... .+.+.+. .+.. ..+..++++++|+||-
T Consensus 24 ~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~-~~~~~~~-----g~~~-------~~~~~e~~~~aDvVi~ 89 (312)
T 3qsg_A 24 AMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESW-RPRAEEL-----GVSC-------KASVAEVAGECDVIFS 89 (312)
T ss_dssp -CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHH-HHHHHHT-----TCEE-------CSCHHHHHHHCSEEEE
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHH-HHHHHHC-----CCEE-------eCCHHHHHhcCCEEEE
Confidence 47999998 79999999999999999 999998863 111 1111111 1111 1345567778999996
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 90 ~v 91 (312)
T 3qsg_A 90 LV 91 (312)
T ss_dssp CS
T ss_pred ec
Confidence 64
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0029 Score=58.08 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=31.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~ 43 (322)
+|+|.|+| +|++|..++..|++. |++|++.+|++.
T Consensus 5 ~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~~d~~~~ 41 (467)
T 2q3e_A 5 IKKICCIG-AGYVGGPTCSVIAHMCPEIRVTVVDVNES 41 (467)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred ccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 46899998 799999999999999 899999988753
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0081 Score=51.54 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=41.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
+||-++| .|..|+.+++.|++.||+|++.+|++++... +.+ .+ .+. -++..++++.+|+||-+-
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~--l~~---~G--~~~-------~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEP--LTK---LG--ATV-------VENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CT--TTT---TT--CEE-------CSSGGGGCCTTCEEEECC
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHH--HHH---cC--CeE-------eCCHHHHHhcCCceeeec
Confidence 6899998 8999999999999999999999998765432 111 11 111 134556778899998764
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=55.75 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=45.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEe--CCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVR--DPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r--~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|+|.|+| .|.+|+.++..|.+.|++|++.+| ++... +.+.+..... ..+.......+++++..++++++|+||-
T Consensus 1 m~I~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~ 77 (335)
T 1txg_A 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEIL--KSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLL 77 (335)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHH--HHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCeEEEEEccCCHHHH--HHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEE
Confidence 3799999 599999999999999999999988 54221 1111110000 0010000011222355667789999997
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 78 ~v 79 (335)
T 1txg_A 78 GV 79 (335)
T ss_dssp CS
T ss_pred cC
Confidence 65
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 322 | ||||
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-36 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 6e-29 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-27 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-25 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 5e-25 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 4e-23 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 1e-21 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 4e-19 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-17 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-16 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 5e-16 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 6e-16 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 3e-15 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 7e-15 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-14 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-13 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 1e-13 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-13 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 5e-13 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 4e-12 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 7e-11 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 1e-07 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 1e-07 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-07 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 2e-07 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 2e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 2e-07 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 4e-07 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 1e-06 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 2e-06 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 3e-06 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 4e-06 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 7e-06 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 7e-06 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 8e-06 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 9e-06 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 9e-06 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 1e-05 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 1e-05 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 1e-05 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 2e-05 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-05 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 2e-05 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-05 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-05 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 3e-05 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 3e-05 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 3e-05 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 3e-05 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 3e-05 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 4e-05 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-05 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 6e-05 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 7e-05 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 7e-05 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 8e-05 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 9e-05 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 1e-04 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 1e-04 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 1e-04 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 1e-04 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-04 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 2e-04 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 2e-04 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 3e-04 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 3e-04 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 5e-04 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 6e-04 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 6e-04 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 0.001 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 0.002 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 0.002 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 0.002 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.002 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 0.002 |
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 131 bits (329), Expect = 2e-36
Identities = 94/330 (28%), Positives = 146/330 (44%), Gaps = 26/330 (7%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLHLFKANL 67
+V VTGA+GFVAS +V+ LL+ GY V+ T R + + + ++
Sbjct: 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDM 71
Query: 68 LEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
L++G++D + G GV H AS V F N ++V PA+ GTLN LR+ A S+KR VL
Sbjct: 72 LKQGAYDEVIKGAAGVAHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVL 129
Query: 128 TSSIGAMLLNE---------TPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
TSS + L+ + ID+ +++ Y+ +KT AE AAWK
Sbjct: 130 TSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWK 189
Query: 179 FAKENGI--DLVAIHPGTVIGPFFQPILNFGA--EVILNLINGDQSFAFP----YIFVEI 230
F EN L A+ P IG F P G+ +++L NG+ S A +V
Sbjct: 190 FMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSA 249
Query: 231 RDVVYAHIRALEVPKASGRY-LLAGSVAQHSDILKFLREHYPTLLRSGKLEEK----YQP 285
D+ H+ L +P+ R + +L R+ YP+ ++ +
Sbjct: 250 VDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKF 309
Query: 286 TIKVSQERAKSLGI-NFTPWEVGVRGCIES 314
S E KSLG + E ++ + S
Sbjct: 310 DTAPSLEILKSLGRPGWRSIEESIKDLVGS 339
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (277), Expect = 6e-29
Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 28/252 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + +TG +GFV S L L+ G+ V V + + + ++ G E L +++
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTV-VDNFFTGRKRNVEHWIGH-ENFELINHDVV 59
Query: 69 EEGSFDSAVDGCDGVFHTASP--VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ D ++H ASP NP + +GTLN+L +V R++
Sbjct: 60 -----EPLYIEVDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAKRVG--ARLL 111
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
L S+ E + P + Y K +AE + + K+ G++
Sbjct: 112 LASTSEVYGDPEVHPQSEDYWGHVNPIGP------RACYDEGKRVAETMCYAYMKQEGVE 165
Query: 187 LVAIHPGTVIGPFFQP-----ILNFGAEVILN---LINGDQSFAFPYIFVEIRDVVYAHI 238
+ GP + NF + + + G S + +V D+V +
Sbjct: 166 VRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVS--DLVNGLV 223
Query: 239 RALEVPKASGRY 250
+ +S
Sbjct: 224 ALMNSNVSSPVN 235
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 106 bits (265), Expect = 8e-27
Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 24/263 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPN-SPKTEHLRELDGATERLHLFKANLLE 69
+ +TG +GF+ S +V+ +++ + + E L ++ + R + A++ +
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISES-NRYNFEHADICD 61
Query: 70 EGSFDSAVDG--CDGVFHTASPV-IFLSDNPQADIVDPAVMGTLNVLRSCAKVHS----- 121
+ D V H A+ + S A ++ ++GT +L K S
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 122 ---IKRVVLTSSIGAM-LLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAW 177
R S+ L + V + + YS +K ++
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSS--PYSASKASSDHLVR 179
Query: 178 KFAKENGIDLVAIHPGTVIGPFFQP--ILNFGAEVILN----LINGDQSFAFPYIFVEIR 231
+ + G+ + + GP+ P ++ L I G +++VE
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVE-- 237
Query: 232 DVVYAHIRALEVPKASGRYLLAG 254
D A + KA Y + G
Sbjct: 238 DHARALHMVVTEGKAGETYNIGG 260
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 2e-25
Identities = 55/321 (17%), Positives = 102/321 (31%), Gaps = 37/321 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL----DGATERLHLFK 64
KV +TG +G S+L + LL++GY V R +S TE + + + HL
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 65 ANLLEEGSFDSAVDGC--DGVF--HTASPVIFLSDNPQADIVDPAVMGTLNVLRSC--AK 118
+L + + + D V+ S V ++P+ D MGTL +L +
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTA-DVDAMGTLRLLEAIRFLG 120
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
+ R S+ + ++ ET P Y++AK A
Sbjct: 121 LEKKTRFYQASTSELY-----GLVQEIPQKETTPFYPRSP------YAVAKLYAYWITVN 169
Query: 179 FAKENGIDLVAIHPGTVIGP----------FFQPILNFGAEVILNLINGDQSFAFPYIFV 228
+ + G+ P + I N + L G+ +
Sbjct: 170 YRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHA 229
Query: 229 EIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIK 288
+D V L+ + + + Q+S + +F+ L + E
Sbjct: 230 --KDYVKMQWMMLQQEQPEDFVI--ATGVQYS-VRQFVEMAAAQLGIKLRFEGTGVEEKG 284
Query: 289 VSQERAKSLGINFTPWEVGVR 309
+ P +V +
Sbjct: 285 IVVSVTGHDAPGVKPGDVIIA 305
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 100 bits (250), Expect = 5e-25
Identities = 48/256 (18%), Positives = 86/256 (33%), Gaps = 28/256 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKA----TVRD--PNSPKTEHLRELDGATERLHLFK 64
+ VTG +GF+ S V+ LL Y V D + +L +D A RL
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFVH 61
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNP-QADIVDPAVMGTLNVLRSCAKVHSIK 123
++ + G + G D + H A+ + + V GT +L+ +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD-AGVG 120
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
RVV S+ E+ P Y+ +K ++ A + +
Sbjct: 121 RVVHVSTNQVY-----GSIDSGSWTESSPLEPN------SPYAASKAGSDLVARAYHRTY 169
Query: 184 GIDLVAIHPGTVIGPFFQP---ILNFGAEVILN---LINGDQSFAFPYIFVEIRDVVYAH 237
G+D+ GP+ P I F ++ + GD + ++ + D
Sbjct: 170 GLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTD--DHCRGI 227
Query: 238 IRALEVPKASGRYLLA 253
L +A Y +
Sbjct: 228 ALVLAGGRAGEIYHIG 243
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 94.9 bits (235), Expect = 4e-23
Identities = 35/192 (18%), Positives = 70/192 (36%), Gaps = 28/192 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ V + G G V S + + L QRG L+L + +
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE----------------LNLLDSRAV 46
Query: 69 EEGSFDSAVDGCDGVFHTASPV--IFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ A + D V+ A+ V I ++ AD + +M N++ + + + + +++
Sbjct: 47 HD---FFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNKLL 102
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
S P + E+ L N E Y++AK + + ++ G D
Sbjct: 103 FLGSSCIY-----PKLAKQPMAESELLQGTLEPTN-EPYAIAKIAGIKLCESYNRQYGRD 156
Query: 187 LVAIHPGTVIGP 198
++ P + GP
Sbjct: 157 YRSVMPTNLYGP 168
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.2 bits (225), Expect = 1e-21
Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 21/200 (10%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-----DGATERLHLF 63
V +TG +G S+L + LL++GY V VR +S T + L + L
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61
Query: 64 KANLLEEGSFDSAVDGCDGVFH---TASPVIFLSDNPQADIVDPAVMGTLNVLRSC--AK 118
+L + ++ A + +S + D +GTL +L +
Sbjct: 62 YGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG 121
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
+ + + S+ ++ ET P Y AK A
Sbjct: 122 LINSVKFYQASTSELY-----GKVQEIPQKETTPFYPR------SPYGAAKLYAYWIVVN 170
Query: 179 FAKENGIDLVAIHPGTVIGP 198
F + + V P
Sbjct: 171 FREAYNLFAVNGILFNHESP 190
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 84.3 bits (207), Expect = 4e-19
Identities = 44/256 (17%), Positives = 75/256 (29%), Gaps = 27/256 (10%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ VTG +G ++L KLLL++GY V V +S LREL G + ++
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL-GIEGDIQYEDGDMA 59
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADI---VDPAVMGTLNVLRSCAKVHSIKRV 125
+ S AV +G ++L + + R
Sbjct: 60 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 119
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
S+ + DE + Y +AK + + G+
Sbjct: 120 YQASTSEMF-----GLIQAERQDENT------PFYPRSPYGVAKLYGHWITVNYRESFGL 168
Query: 186 DLVAIHPGTVIGPFFQP------ILNFGAEVILN----LINGDQSFAFPYIFVEIRDVVY 235
+ P + + A + L L G+ + F D V
Sbjct: 169 HASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFA--GDYVE 226
Query: 236 AHIRALEVPKASGRYL 251
A L+ KA +
Sbjct: 227 AMWLMLQQDKADDYVV 242
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 79.6 bits (195), Expect = 2e-17
Identities = 48/323 (14%), Positives = 96/323 (29%), Gaps = 25/323 (7%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTG +GF+ S V + V TV D + +R+ L ++
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62
Query: 69 EEGSFDSAVDGCDGVFHTA--SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ D D + H A S ++P I +GT +L + K +
Sbjct: 63 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHT-NFIGTYTLLEAARKYD----IR 117
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE---WYSLAKTLAEEAAWKFAKEN 183
+ + P+ D+ + N YS K ++ + +
Sbjct: 118 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 177
Query: 184 GIDLVAIHPGTVIGPFFQPILNFGAEVILNL------INGDQSFAFPYIFVEIRDVVYAH 237
G+ + GP+ ++ L + G+ +I D
Sbjct: 178 GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIH--TNDHSTGV 235
Query: 238 IRALEVPKASG-RYLLAGSVAQHSDILKFLREHY---PTLLRSGKLEEKYQPTIKVSQER 293
L + + A + ++L+ + E + + +
Sbjct: 236 WAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASK 295
Query: 294 AKS-LG--INFTPWEVGVRGCIE 313
+ LG FT + G+ I+
Sbjct: 296 LRDELGWTPQFTDFSEGLEETIQ 318
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 76.2 bits (186), Expect = 3e-16
Identities = 28/262 (10%), Positives = 60/262 (22%), Gaps = 31/262 (11%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
++K + V GA+G + L+++ G+ V+A V E L+ + T LF+
Sbjct: 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVT----LFQGP 57
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
LL + + + + + A AK +
Sbjct: 58 LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADA-----------AKRAGTIQHY 106
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+ SS+ P + +
Sbjct: 107 IYSSMPD----------------HSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGI 150
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKA 246
F ++ G + D + ++ + +
Sbjct: 151 YNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWN 210
Query: 247 SGRYLLAGSVAQHSDILKFLRE 268
R L +
Sbjct: 211 GHRIALTFETLSPVQVCAAFSR 232
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.1 bits (178), Expect = 5e-16
Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 47/241 (19%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GA+G + +Q GY V VRD + +E H+ ++L
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-------PRPAHVVVGDVL 56
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ D V G D V G N++ + K H + +VV
Sbjct: 57 QAADVDKTVAGQDAVIVLLGTR------NDLSPTTVMSEGARNIVAAM-KAHGVDKVVAC 109
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
+S + + A T K +E+G+ V
Sbjct: 110 TS----------------------AFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYV 147
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG 248
A+ P + ++G + D+ + +R L + G
Sbjct: 148 AVMPPHIGD-------QPLTGAYTVTLDGRGPSR----VISKHDLGHFMLRCLTTDEYDG 196
Query: 249 R 249
Sbjct: 197 H 197
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.4 bits (184), Expect = 6e-16
Identities = 44/271 (16%), Positives = 88/271 (32%), Gaps = 25/271 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ N TE + +L
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF-------CDEFHLVDLRVM 70
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAV-MGTLNVLRSCAKVHSIKRVVLTS 129
+ +G D VF+ A+ + + V + A+++ IKR S
Sbjct: 71 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 130
Query: 130 SIGAMLLNETPMTPDVVI--DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
S + T +V + + W + P + + L K EE + K+ GI+
Sbjct: 131 SACIYPEFKQLETTNVSLKESDAWPAEPQ------DAFGLEKLATEELCKHYNKDFGIEC 184
Query: 188 VAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE---IRDVVY------AHI 238
+ GPF S ++ + R + +
Sbjct: 185 RIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVL 244
Query: 239 RALEVPKASGRYLLAGSVAQHSDILKFLREH 269
R + + + + +++ + +
Sbjct: 245 RLTKSDFREPVNIGSDEMVSMNEMAEMVLSF 275
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 73.2 bits (178), Expect = 3e-15
Identities = 44/240 (18%), Positives = 77/240 (32%), Gaps = 20/240 (8%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE-----RLHLF 63
K+ +TG +G S+L + LL +GY V +R ++ T+ + + + L
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 64 KANLLEEGSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
A+L + S +D D V++ A+ D V L + H+
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
I A TP ET +P + Y+ +K A + +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPP-PQSETTPFHP------RSPYAASKCAAHWYTVNYRE 174
Query: 182 ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV----EIRDVVYAH 237
G+ P NF I + + +F+ RD +A
Sbjct: 175 AYGLFACNGILFNHESPRRGE--NFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAG 232
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 72.1 bits (175), Expect = 7e-15
Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 31/260 (11%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TG GF+ S L L +G + T++L L ++ +
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL-GNFEFVHGDIRNK 61
Query: 71 GSFDSAVDGC--DGVFHTA--SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ D FH A + DNP D + V GTLN+L + + +S ++
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDF-EINVGGTLNLLEAVRQYNSNCNII 120
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN-----KEWYSLAKTLAEEAAWKFAK 181
+S+ E + T P E+ Y +K A++ +A+
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180
Query: 182 ENGIDLVAIHPGTVIGPFFQP----------------ILNFGAEVILNLINGDQSFAFPY 225
G++ V ++ G I N + NG Q
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRD--- 237
Query: 226 IFVEIRDVVYAHIRALEVPK 245
+ D++ + AL
Sbjct: 238 -VLHAEDMISLYFTALANVS 256
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 70.4 bits (171), Expect = 2e-14
Identities = 54/333 (16%), Positives = 100/333 (30%), Gaps = 43/333 (12%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVR--DPNSPKTEHLRELDGATE----RLHL 62
KV +TG +GF+ S L++ LL+ V + + +R L + +
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQ 76
Query: 63 FKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
L++ + A V ++P + G LN+L +
Sbjct: 77 GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSN-ATNIDGFLNMLIAARDAKVQ 135
Query: 123 KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE 182
SS + P + E P+ Y++ K + E A F++
Sbjct: 136 SFTYAASS------STYGDHPGLPKVEDTIGKPL------SPYAVTKYVNELYADVFSRC 183
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLIN-----------GDQSFAFPYIFVEIR 231
G + + V G P + A VI + GD + + ++E
Sbjct: 184 YGFSTIGLRYFNVFGRRQDPNGAYAA-VIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 242
Query: 232 DVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLEEKYQP----- 285
+ + Y +A G + + LR+ S E Y+
Sbjct: 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGD 302
Query: 286 --TIKVSQERAKSLGINFTP---WEVGVRGCIE 313
+A L + + P GV +
Sbjct: 303 VRHSLADISKAAKL-LGYAPKYDVSAGVALAMP 334
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 68.5 bits (166), Expect = 1e-13
Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 15/209 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V VTG SG++ S LLQ G+ V NS ++ + + ++ E
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 71 GSFDSAVD--GCDGVFHTA--SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ D V H A V P + D V GTL ++ + + ++K +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAM-RAANVKNFI 120
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+SS + T S K E +
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL---------TDLQKAQPDWS 171
Query: 187 LVAIHPGTVIGPFFQPILNFGAEVILNLI 215
+ + +G + + I N +
Sbjct: 172 IALLRYFNPVGAHPSGDMGEDPQGIPNNL 200
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.2 bits (165), Expect = 1e-13
Identities = 44/246 (17%), Positives = 78/246 (31%), Gaps = 22/246 (8%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K+V VTG +G++ S V L++ GY NS R + ++ +L
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61
Query: 69 EEGSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ + D V H A + VL + +++ + V
Sbjct: 62 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 121
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPV----LCKENKEWYSLAKTLAEEAAWKFAKE 182
SS + + T + I E P K E +++ +WKFA
Sbjct: 122 -FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAIL 180
Query: 183 NGIDLVAIHPGTVIG-----------PFFQPILNFGAEVILNLINGDQSFAFPYIFVEIR 231
+ + HP +IG P+ + E + + S IR
Sbjct: 181 RYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTP----IR 236
Query: 232 DVVYAH 237
D ++
Sbjct: 237 DYIHVV 242
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 67.5 bits (163), Expect = 2e-13
Identities = 26/250 (10%), Positives = 67/250 (26%), Gaps = 37/250 (14%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE-RLHLFKANLLE 69
V + G +G++ +V + G+ R + ++ L + L +A+L +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65
Query: 70 EGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
A+ D V + + + + A + +IKR + +
Sbjct: 66 HQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEA----------IKEAGNIKRFLPSE 115
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
+ + + + + I
Sbjct: 116 ------------------FGMDPDIMEHALQPGSIT----FIDKRKVRRAIEAASIPYTY 153
Query: 190 IHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI--FVEIRDVVYAHIRALEVPKAS 247
+ G F + ++ +V+ DV I++++ P+
Sbjct: 154 VSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTL 213
Query: 248 GR--YLLAGS 255
+ Y+
Sbjct: 214 NKTMYIRPPM 223
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 65.6 bits (158), Expect = 5e-13
Identities = 38/254 (14%), Positives = 66/254 (25%), Gaps = 21/254 (8%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
V VTGASG + K L + A ++ E + +F ++
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG------GEADVFIGDIT 57
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ S + A G D + S V DP G + + +
Sbjct: 58 DADSINPAFQGIDALVILTSAV-----PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ 112
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
+ VV + + L E + +
Sbjct: 113 KNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTII- 171
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG 248
G ++ G L + D+ V DV I+AL +A
Sbjct: 172 --RAGGLLDK-------EGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKN 222
Query: 249 RYLLAGSVAQHSDI 262
+ GS + +
Sbjct: 223 KAFDLGSKPEGTST 236
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 63.7 bits (153), Expect = 4e-12
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 44/249 (17%)
Query: 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP----NSPKTEHLRELDGATERLH 61
G + + GA+G++ + K L G+ VR+ NS K + L +
Sbjct: 1 GSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKA--SGAN 58
Query: 62 LFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
+ ++ + S AV D V T + + + + K
Sbjct: 59 IVHGSIDDHASLVEAVKNVDVVISTVGSLQ---------------IESQVNIIKAIKEVG 103
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
+ S G +D P + + +
Sbjct: 104 TVKRFFPSEFGND------------VDNVHAVEPAKSVFEVKAKV----------RRAIE 141
Query: 182 ENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFAFPYIFVEIRDVVYAHIRA 240
GI + G F + + G +FV+ D+ I+A
Sbjct: 142 AEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKA 201
Query: 241 LEVPKASGR 249
++ P+ +
Sbjct: 202 VDDPRTLNK 210
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 60.2 bits (144), Expect = 7e-11
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 6/212 (2%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V VTG +GF WL L G TVK +P L E + + ++
Sbjct: 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT--APTVPSLFETARVADGMQSEIGDIR 66
Query: 69 EEGS---FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
++ A P++ LS + + VMGT+ +L + V +K V
Sbjct: 67 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 126
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
V +S E + +P + + ++G
Sbjct: 127 VNITSDKCYDNKEWIWGYR-ENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGT 185
Query: 186 DLVAIHPGTVIGPFFQPILNFGAEVILNLING 217
+ + G VIG + +++
Sbjct: 186 AVATVRAGNVIGGGDWALDRIVPDILRAFEQS 217
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.6 bits (118), Expect = 1e-07
Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
VTGA + VK L G V A R L L + +L
Sbjct: 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN-----SDLVSLAKECPGIEPVCVDLG 60
Query: 69 EEGSFDSAVD---GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
+ + + A+ D + + A P + ++ + V + A+
Sbjct: 61 DWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDM 120
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFA 180
+ V + + ++ + T + L K +A E
Sbjct: 121 INRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA----------MTMLTKAMAMELG---- 166
Query: 181 KENGIDLVAIHPGTVIGPFFQPI 203
+ I + +++P V+ + +
Sbjct: 167 -PHKIRVNSVNPTVVLTDMGKKV 188
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 1e-07
Identities = 25/208 (12%), Positives = 58/208 (27%), Gaps = 32/208 (15%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
++V +TGA + + + + + + E + G ++H F +
Sbjct: 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE-ETAAKCKGLGAKVHTFVVDCS 66
Query: 69 EEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
S+ + + A S + D + V+ ++
Sbjct: 67 NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAF 126
Query: 117 AKVHSIK---RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE 173
+ +V +S + + + F+ KTL +
Sbjct: 127 LPAMTKNNHGHIVTVASAAGH----VSVPFLLAYCSSKFAA----------VGFHKTLTD 172
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQ 201
E A + G+ + P V F +
Sbjct: 173 ELAAL--QITGVKTTCLCPNFVNTGFIK 198
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 31/240 (12%), Positives = 66/240 (27%), Gaps = 29/240 (12%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
MS V VTGA+ + LV+ L++ + K L+ + + R+H
Sbjct: 1 MSP----GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDS--RVH 54
Query: 62 LFKANLLEEGSFDSAVDG---------------CDGVFHTASPVIFLSDNPQADIVDPAV 106
+ + + S D+ V GV + + A+ +D
Sbjct: 55 VLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNT 114
Query: 107 MGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166
+ + + S + +T + + + Y
Sbjct: 115 TSVVLLTQKLLP-LLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYR 173
Query: 167 LAKTLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNF----GAEVILNLINGDQ 219
++K A + + + +V PG V +++ N
Sbjct: 174 MSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLD 233
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 30/244 (12%), Positives = 53/244 (21%), Gaps = 47/244 (19%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V + GA+G L+ +L K +
Sbjct: 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHP------------------- 43
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
D + ++ D A +
Sbjct: 44 ----------RLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDL--- 90
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
L S ++ +Y+ K E+A +
Sbjct: 91 -----PLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLT--- 142
Query: 189 AIHPGTVIGPFFQPILNFG-AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKAS 247
P + GP + L A I ++ G Y +E D+ A R
Sbjct: 143 IARPSLLFGPREEFRLAEILAAPIARILPGK------YHGIEACDLARALWRLALEEGKG 196
Query: 248 GRYL 251
R++
Sbjct: 197 VRFV 200
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (116), Expect = 2e-07
Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 49/235 (20%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS-PKTEHLRELDGATERLHLFKA 65
+++ VTGASG + + + + L+Q+G V R + + + G L ++
Sbjct: 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRC 68
Query: 66 NLLEEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVL 113
+L E S G D + A ++ S + D+ + V+
Sbjct: 69 DLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICT 128
Query: 114 RSCAKVHSIK-----RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168
R + + ++ +S+ + +T +YS
Sbjct: 129 REAYQSMKERNVDDGHIININSMSGHRVLPLSVTH--------------------FYSAT 168
Query: 169 K--------TLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
K L +E + A+ I I PG V F + + E
Sbjct: 169 KYAVTALTEGLRQE--LREAQ-THIRATCISPGVVETQFAFKLHDKDPEKAAATY 220
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 28/246 (11%), Positives = 56/246 (22%), Gaps = 37/246 (15%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V + GASG L+K +L++G K T+ +
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA----------------- 57
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + + + + + +
Sbjct: 58 ---------------YKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVR 102
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLV 188
+L + S+ K + Y K E +
Sbjct: 103 VDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEEL---KFDRYS 159
Query: 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASG 248
PG ++ + G ++ V + VV A + + P+
Sbjct: 160 VFRPGVLLCDRQES--RPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQ 217
Query: 249 RYLLAG 254
LL
Sbjct: 218 MELLEN 223
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 4e-07
Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 21/217 (9%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKA-----TVRDPNSPKTEHLRELDGAT-ERLHL 62
+ V VTG +G++ S V LL+ GY E LR + T +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 63 FKANLLEEGSFDSAVDGCDGVFHT---ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ ++L++G+ + + S D + GT+ +L
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA- 121
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
H +K +V +SS + + + Y +K EE
Sbjct: 122 HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTN----------PYGKSKFFIEEMIRDL 171
Query: 180 AKEN-GIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
+ + + V + G + + I N +
Sbjct: 172 CQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNL 208
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (110), Expect = 1e-06
Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 15/219 (6%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATE 58
+ G + +V VTG + + +VK LL+ G V R K+ + L+ T+
Sbjct: 5 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK 64
Query: 59 --RLHLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
R+ + N+ E ++ V F + FL +N + PA + +
Sbjct: 65 QARVIPIQCNIRNEEEVNNLVKSTLDTFG---KINFLVNNGGGQFLSPAEHISSKGWHAV 121
Query: 117 AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN---KEWYSLAKTLAE 173
+ + + ++ + + E + +I T P+ Y+L K+LA
Sbjct: 122 LETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLAL 181
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVIL 212
E A +GI + + PG + +
Sbjct: 182 EWA-----CSGIRINCVAPGVIYSQTAVENYGSWGQSFF 215
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (110), Expect = 2e-06
Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 39/216 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
KVV VTG + + +V+ + G V +D R L+ ++
Sbjct: 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE-----SGGRALEQELPGAVFILCDVT 61
Query: 69 EEGSFDSAVD-------GCDGVFHTA------SPVIFLSDNPQADIVDPAVMGTLNVLRS 115
+E + V D V + A S +++ ++GT + +
Sbjct: 62 QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKL 121
Query: 116 CAKVHSIK--RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE 173
V+ SS+ ++ K LA
Sbjct: 122 ALPYLRKSQGNVINISSLVGA--------------IGQAQAVPYVATKGAVTAMTKALAL 167
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
+ + G+ + I PG + P ++ + +
Sbjct: 168 DESPY-----GVRVNCISPGNIWTPLWEELAALMPD 198
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (107), Expect = 3e-06
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V + G +GF+ + L + LL+ + + D S H + ++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISRFLNHP----HFHFVEGDISIH 57
Query: 71 GSF-DSAVDGCDGVFH 85
+ + V CD V
Sbjct: 58 SEWIEYHVKKCDVVLP 73
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (106), Expect = 4e-06
Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 38/210 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+ V VTGA + V+ L G V A R L L + +L
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ-----ADLDSLVRECPGIEPVCVDLG 62
Query: 69 EEGSFDSAVD---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH 120
+ + + A+ D + + A+ + ++ + + + V + A+
Sbjct: 63 DWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGL 122
Query: 121 SIK----RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW-YSLAKTLAEEA 175
+ +V SS + +N + K L K +A E
Sbjct: 123 IARGVPGAIVNVSSQCSQ---------------RAVTNHSVYCSTKGALDMLTKVMALEL 167
Query: 176 AWKFAKENGIDLVAIHPGTVIGPFFQPILN 205
+ I + A++P V+ Q +
Sbjct: 168 G-----PHKIRVNAVNPTVVMTSMGQATWS 192
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 44.3 bits (104), Expect = 7e-06
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 30/230 (13%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
+S K + VTG + + + + G V R + +
Sbjct: 5 ISFVN--KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTK 62
Query: 62 LFKANLLEEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGT 109
++ ++ + G+ A P L+ A + D V G
Sbjct: 63 AYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGV 122
Query: 110 LNVLRSCAKVHSIK----RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165
N R+ AK+ K +V+TSS+ + ++N++ + +
Sbjct: 123 FNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNG-------SLTQVFYNSSKAACS 175
Query: 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
+L K LA E A GI + A+ PG V + + + I
Sbjct: 176 NLVKGLAAEWA-----SAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNI 220
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 44.2 bits (104), Expect = 7e-06
Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 35/215 (16%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
KV VTG + V +VKLLL G V + D N + L G ER + ++
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFS--DINEAAGQQLAAELG--ERSMFVRHDVS 62
Query: 69 EEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
E + + + + + A + + ++ +
Sbjct: 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQG 122
Query: 117 AKVHSIK--RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEE 174
++ +S+ + L +L + A
Sbjct: 123 IAAMKETGGSIINMASVSSWL--------------PIEQYAGYSASKAAVSALTRAAALS 168
Query: 175 AAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
+ I + +IHP + P Q L G
Sbjct: 169 CRK---QGYAIRVNSIHPDGIYTPMMQASLPKGVS 200
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 45.0 bits (104), Expect = 8e-06
Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 24/218 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTV---------------KATVRDPNSPKTEHLREL 53
V V G G+ L ++ Y V P + + +
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 54 DGAT-ERLHLFKANLLEEGSFDSAVD------GCDGVFHTASPVIFLSDNPQADIVDPAV 106
T + + L+ ++ + + ++P + + V
Sbjct: 62 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 121
Query: 107 MGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS--NPVLCKENKEW 164
+GTLNVL + + +V ++G + + K+ +
Sbjct: 122 IGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 181
Query: 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202
Y L+K K GI ++ G V G
Sbjct: 182 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDE 219
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 43.9 bits (103), Expect = 9e-06
Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 43/223 (19%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
++KV +TG +G + KL ++ G V D + + G+ + + +
Sbjct: 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIA--DIADDHGQKVCNNIGSPDVISFVHCD 62
Query: 67 LLEEGSFDSAVDGC-------DGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNV 112
+ ++ + VD D +F + + ++D V G V
Sbjct: 63 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 122
Query: 113 LRSCAKVHSIKR---VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK 169
+ A+V + +V T+SI + E Y+ K
Sbjct: 123 AKHAARVMIPAKKGSIVFTASISSFTAGEGVSH---------------------VYTATK 161
Query: 170 TLAEEAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAE 209
E GI + + P V P + +
Sbjct: 162 HAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSS 204
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 44.0 bits (103), Expect = 9e-06
Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 11/204 (5%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
M + E KVV +TG+S + + V R L E+
Sbjct: 1 MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAI 60
Query: 62 LFKANLLEEGS----FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCA 117
K ++ E SA+ + + + ++ ++ + A
Sbjct: 61 AVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGA 120
Query: 118 KVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAW 177
+ S + + + I F + K + +TLA E A
Sbjct: 121 FLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLM--TETLALEYA- 177
Query: 178 KFAKENGIDLVAIHPGTVIGPFFQ 201
GI + I PG + P
Sbjct: 178 ----PKGIRVNNIGPGAINTPINA 197
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 43.9 bits (103), Expect = 1e-05
Identities = 26/202 (12%), Positives = 61/202 (30%), Gaps = 18/202 (8%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKAN 66
K V +TG+S + + + G V T R+ + + + + + E+++ A+
Sbjct: 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVAD 64
Query: 67 LLEEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ E D ++ D + + A + D T +
Sbjct: 65 VTEASGQDDIINTTLAKFGKIDILVNNAGANLA-DGTANTDQPVELYQKTFKLNFQAVIE 123
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKF 179
+ K + ++ V + P + A +
Sbjct: 124 MTQKTKEHLIKTKGEI---VNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLI--- 177
Query: 180 AKENGIDLVAIHPGTVIGPFFQ 201
++G+ + ++ PG V F
Sbjct: 178 --QHGVRVNSVSPGAVATGFMG 197
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 43.5 bits (102), Expect = 1e-05
Identities = 36/219 (16%), Positives = 69/219 (31%), Gaps = 35/219 (15%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTGA+ + + L + G ++ A R+ E + L+ A++
Sbjct: 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA-EAVAALEA---EAIAVVADVS 61
Query: 69 EEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
+ + ++ GV H A + L ++ + G+ V R
Sbjct: 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKA 121
Query: 117 AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAA 176
+V ++ + A L F LA+TLA E A
Sbjct: 122 GEVLEEGGSLVLTGSVAGL--------------GAFGLAHYAAGKLGVVGLARTLALELA 167
Query: 177 WKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
G+ + + PG + P + + E +
Sbjct: 168 -----RKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGAS 201
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (103), Expect = 1e-05
Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 28/207 (13%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS-PKTEHLRELDGATERLHLFKANL 67
KV VTGA+ + + LL +G V + + + + ++ + ++
Sbjct: 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDV 63
Query: 68 LEEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADI-VDPAVMGTLNVLRSCAKV 119
++ D + + A + I + + GT L +K
Sbjct: 64 ADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQ 123
Query: 120 HS--IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAW 177
+ ++ SS+ ++ PV C ++ A A
Sbjct: 124 NGGEGGIIINMSSLAGLM--------------PVAQQPVYCASKHGIVGFTRSAALAANL 169
Query: 178 KFAKENGIDLVAIHPGTVIGPFFQPIL 204
+G+ L AI PG V + I
Sbjct: 170 ---MNSGVRLNAICPGFVNTAILESIE 193
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 42.9 bits (101), Expect = 2e-05
Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 37/212 (17%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
++K+ +TG + + + + G + P +R L R+ K +
Sbjct: 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGR---RVLTVKCD 60
Query: 67 LLEEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLR 114
+ + G ++ CD + + A P L+ + V + +
Sbjct: 61 VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAK 120
Query: 115 SCAKVHSIK---RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTL 171
+ R++ +S L E +++ + K + L
Sbjct: 121 AFVPGMKRNGWGRIINLTSTTYWLKIE------------AYTHYISTKAA--NIGFTRAL 166
Query: 172 AEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI 203
A + ++GI + AI P V +
Sbjct: 167 ASDLG-----KDGITVNAIAPSLVRTATTEAS 193
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 31/208 (14%), Positives = 56/208 (26%), Gaps = 29/208 (13%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
KV VTGA + + L +RG V + E + + KAN+
Sbjct: 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVG 78
Query: 69 EEGSFDSAVD-------GCDGVFHTAS-----PVIFLSDNPQADIVDPAVMGTLNVLRSC 116
+ D V + V ++ + G V R
Sbjct: 79 VVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREA 138
Query: 117 AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAA 176
K I ++ P + K E + A+ +A + A
Sbjct: 139 YKHLEIGGRLILMGSITGQAKAVP----------KHAVYSGSKGAIE--TFARCMAIDMA 186
Query: 177 WKFAKENGIDLVAIHPGTVIGPFFQPIL 204
+ I + + PG + + +
Sbjct: 187 -----DKKITVNVVAPGGIKTDMYHAVC 209
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 32/216 (14%), Positives = 61/216 (28%), Gaps = 21/216 (9%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ER 59
M+ G KV VTG++ + + L +G + + + L +
Sbjct: 1 MLKG----KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK 56
Query: 60 LHLFKANLLEEGSFDSAVD------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVL 113
+ A+L + + VD G + + + + + LN+
Sbjct: 57 VLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLS 116
Query: 114 RSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE 173
+ + G ++ + + K A
Sbjct: 117 AVFHGTAAALPHMKKQGFGRIINIASAHGL-----VASANKSAYVAAKHGVVGFTKVTAL 171
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
E A GI AI PG V P + ++ AE
Sbjct: 172 ETA-----GQGITANAICPGWVRTPLVEKQISALAE 202
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 27/213 (12%), Positives = 67/213 (31%), Gaps = 34/213 (15%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKAN 66
K V +TG+S + L Q G V T R + + + + + ++++ A+
Sbjct: 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVAD 65
Query: 67 LLEEGSFDSAVD-------GCDGVFHTASPVIF------LSDNPQAD---IVDPAVMGTL 110
+ E D ++ D + + A I +D + + +
Sbjct: 66 VTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI 125
Query: 111 NVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKT 170
+ + H + ++ +++ + + ++
Sbjct: 126 EMTKKVKP-HLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAA----------LDQYTRS 174
Query: 171 LAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI 203
A + A + GI + ++ PG V F +
Sbjct: 175 TAIDLA-----KFGIRVNSVSPGMVETGFTNAM 202
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 42.7 bits (100), Expect = 2e-05
Identities = 30/209 (14%), Positives = 67/209 (32%), Gaps = 27/209 (12%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
KV +TG + + + ++ G V T R +S E + G +++ F+ +
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGR--HSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 69 EEGSFDSAVD-------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSC 116
+E + D + + A + + ++ + G R
Sbjct: 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 117 AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAA 176
+ K +GA ++N + S ++K+ A + A
Sbjct: 125 IQRMKNKG------LGASIIN----MSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCA 174
Query: 177 WKFAKENGIDLVAIHPGTVIGPFFQPILN 205
K+ + + +HPG + P +
Sbjct: 175 L---KDYDVRVNTVHPGYIKTPLVDDLPG 200
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 42.7 bits (100), Expect = 3e-05
Identities = 27/208 (12%), Positives = 51/208 (24%), Gaps = 38/208 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V A G + + L++R + +P + + ++
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVT 65
Query: 69 EEGS-----FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
+ D V + L D+ + G +N + +
Sbjct: 66 VPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKR 125
Query: 124 ------RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK----TLAE 173
+ S+ N P YS +K +
Sbjct: 126 KGGPGGIIANICSVTGF--NAIHQVPV--------------------YSASKAAVVSFTN 163
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQ 201
A K A G+ +I+PG P
Sbjct: 164 SLA-KLAPITGVTAYSINPGITRTPLVH 190
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.6 bits (100), Expect = 3e-05
Identities = 28/216 (12%), Positives = 60/216 (27%), Gaps = 36/216 (16%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFK 64
EKV +TG+S + L + G V T R + + + + + ++
Sbjct: 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63
Query: 65 ANLLEEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADIVDPA---------VMG 108
A++ + D + D + + A I S + +
Sbjct: 64 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123
Query: 109 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW-YSL 167
+ + + S + E + + K
Sbjct: 124 VIALTKKAVPHLSSTK------------GEIVNISSIASGLHATPDFPYYSIAKAAIDQY 171
Query: 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI 203
+ A + ++GI + +I PG V F +
Sbjct: 172 TRNTAIDLI-----QHGIRVNSISPGLVATGFGSAM 202
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 24/219 (10%)
Query: 3 SGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-DGATERLH 61
SG KV V+G + + + V+ ++ G V E + + +
Sbjct: 1 SGRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD-----EEGKAMAAELADAAR 55
Query: 62 LFKANLLEEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLR 114
++ + + +AVD G + + A L+ D + +
Sbjct: 56 YVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNA---GILNIGTIEDY-ALTEWQRILDVN 111
Query: 115 SCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEE 174
I+ VV + + + K L K+ A E
Sbjct: 112 LTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFA--VRGLTKSTALE 169
Query: 175 AAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILN 213
+GI + +IHPG V P + + L
Sbjct: 170 LG-----PSGIRVNSIHPGLVKTPMTDWVPEDIFQTALG 203
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 34/214 (15%), Positives = 62/214 (28%), Gaps = 31/214 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
KV TGA + + L +RG +V + E + EL + +A++
Sbjct: 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADIS 66
Query: 69 EEGSFDSAVD-------GCDGVFH-----TASPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
+ + D G D V + ++ + + G V +
Sbjct: 67 KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQG 126
Query: 117 AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE-WYSLAKTLAEEA 175
K ++ +S A ++ P N L +K + A +
Sbjct: 127 LKHCRRGGRIILTSSIAAVMTGIP-------------NHALYAGSKAAVEGFCRAFAVDC 173
Query: 176 AWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
G+ + I PG V F A
Sbjct: 174 G-----AKGVTVNCIAPGGVKTDMFDENSWHYAP 202
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 42.7 bits (98), Expect = 3e-05
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRD-PNSPKTEHLRELD 54
+ VTG +GF+ S +VK L +G T V + + K +L +L+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN 46
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 42.1 bits (98), Expect = 4e-05
Identities = 37/211 (17%), Positives = 58/211 (27%), Gaps = 14/211 (6%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE---RLHLFK 64
E+ VTG + + L RGY V ++ E D E R + +
Sbjct: 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYV-EGDVTREEDVRRAVAR 59
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
A + G +++ ++GT NVLR A
Sbjct: 60 AQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENP 119
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
G ++ T V E +L A E A G
Sbjct: 120 PDAEGQRGVIV-----NTASVAAFEGQIGQAAYAASKGGVVALTLPAARELA-----GWG 169
Query: 185 IDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
I +V + PG P Q + + +
Sbjct: 170 IRVVTVAPGLFDTPLLQGLPEKAKASLAAQV 200
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 40/225 (17%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
VV VTGAS + + L + G V E ++++ + F ++
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVS 61
Query: 69 EEGSFDSAVD------------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
+E ++ + + + +I + + +++D + G ++
Sbjct: 62 KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAA 121
Query: 117 AKVHSIK---RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE 173
K+ K R++ +S+ ++ N + Y+ AK
Sbjct: 122 TKIMMKKRKGRIINIASVVGLIGN----------------------IGQANYAAAKAGVI 159
Query: 174 EAAWKFAKE---NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
+ A+E I++ + PG + + + IL I
Sbjct: 160 GFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI 204
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 41.6 bits (97), Expect = 6e-05
Identities = 21/202 (10%), Positives = 52/202 (25%), Gaps = 16/202 (7%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K +TGA + + G +V + + ++ + E+ + + ++
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDIT 70
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGT-----LNVLRSCAKVHSIK 123
E + D V L +N A P
Sbjct: 71 SEQELSAL---ADFAISKLGKVDILVNN--AGGGGPKPFDMPMADFRRAYELNVFSFFHL 125
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
++ + + + + L + +A + E
Sbjct: 126 SQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLG-----EK 180
Query: 184 GIDLVAIHPGTVIGPFFQPILN 205
I + I PG ++ + ++
Sbjct: 181 NIRVNGIAPGAILTDALKSVIT 202
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.2 bits (96), Expect = 7e-05
Identities = 24/210 (11%), Positives = 56/210 (26%), Gaps = 30/210 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V VTG + + +V+ G + R+ E L + ++ +
Sbjct: 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELN-ECLSKWQKKGFQVTGSVCDAS 67
Query: 69 EEGSFDSAVDGC--------DGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLRS 115
+ + D + + P + + + + + ++ +
Sbjct: 68 LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQL 127
Query: 116 CAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEA 175
+ A + + + LA+ LA E
Sbjct: 128 AHPLLK-----------ASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEW 176
Query: 176 AWKFAKENGIDLVAIHPGTVIGPFFQPILN 205
A GI A+ P + P + + +
Sbjct: 177 ASD-----GIRANAVAPAVIATPLAEAVYD 201
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 7e-05
Identities = 57/292 (19%), Positives = 96/292 (32%), Gaps = 55/292 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRG---YTVKATVRDPNSPKT--EHLRELDGATERLHLF 63
VV +TG S + L L + V AT+RD + E R L L
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 64 KANLLEEGSFDSAVDGCDGVF----------HTASPVIFLSDNPQADIVDPAVMGTLNVL 113
+ ++ + S +A + P+ L ++ A ++D V+GT+ +L
Sbjct: 63 QLDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRML 122
Query: 114 RSCAKVHSIKR----VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK 169
++ +R V++T S+G ++ N V C L +
Sbjct: 123 QAFLP-DMKRRGSGRVLVTGSVGGLM--------------GLPFNDVYCASKFALEGLCE 167
Query: 170 TLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229
+LA G+ L I G V F + +L EV+ + Y+
Sbjct: 168 SLAVLLLPF-----GVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHS 222
Query: 230 IR----------DVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 271
+ +V + AL PK + RY L LR
Sbjct: 223 KQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT------TERFLPLLRMRLD 268
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 41.3 bits (95), Expect = 8e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRD 41
+ +TGA+G + + K L + V T
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTDVQ 34
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 41.1 bits (94), Expect = 9e-05
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43
+ + G +G V L + L G + V
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE 35
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 19/207 (9%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K +TG++ + + ++ G V + + + E+ ++
Sbjct: 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAAR-ATAAEIGP---AACAIALDVT 61
Query: 69 EEGSFDSAVD------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
++ S D V G + + + L+ + + +NV + + ++
Sbjct: 62 DQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAV 121
Query: 123 KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE 182
R ++ G V C SL ++
Sbjct: 122 ARAMIAGGRGGK----IINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLI-----R 172
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAE 209
+GI++ AI PG V G + + A+
Sbjct: 173 HGINVNAIAPGVVDGEHWDGVDAKFAD 199
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 12/172 (6%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V +G V LL G V + K + + ++++ A
Sbjct: 24 KKAVVLAGTGPVGMRSAALLAGEGAEVV--LCGRKLDKAQAAADSVNKRFKVNVTAAETA 81
Query: 69 EEGSFDSAVDGCDGVFHTAS-PVIFLSDNPQADIVDPAVMGTLN-----VLRSCAKVHSI 122
++ S AV G VF + + L + ++ N +
Sbjct: 82 DDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKG 141
Query: 123 KRVVLTSSIGAMLLNETPM--TPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
K + GA+ + + + S V E Y LAK +A
Sbjct: 142 KEYGGKRAFGALGIGGLKLKLHRACIAKLFESSEGVFDAEEI--YKLAKEMA 191
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 40.6 bits (95), Expect = 1e-04
Identities = 29/216 (13%), Positives = 64/216 (29%), Gaps = 41/216 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V VTG + + + + + G V P E + GA F+ +L
Sbjct: 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE--GKEVAEAIGGAF-----FQVDLE 58
Query: 69 EEGSFDSAVD-------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
+E V+ D + + A + + +++ + +++
Sbjct: 59 DERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALA 118
Query: 117 AKVHSIKR---VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAE 173
A+ +V +S+ + N +L ++LA
Sbjct: 119 AREMRKVGGGAIVNVASVQGLF--------------AEQENAAYNASKGGLVNLTRSLAL 164
Query: 174 EAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAE 209
+ A I + A+ PG + + +
Sbjct: 165 DLA-----PLRIRVNAVAPGAIATEAVLEAIALSPD 195
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 11/205 (5%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+V VTGA+ + + + L + G V R + L+EL A ++
Sbjct: 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR-TTLKELREAGVEADGRTCDVR 61
Query: 69 EEGS----FDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
+ V+ V + A++ D + + + K+
Sbjct: 62 SVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTG-VFRVTKQ 120
Query: 125 VVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENG 184
V+ + + K L E A G
Sbjct: 121 VLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELA-----RTG 175
Query: 185 IDLVAIHPGTVIGPFFQPILNFGAE 209
I + A+ PG V P + ++
Sbjct: 176 ITVNAVCPGFVETPMAASVREHYSD 200
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 28/213 (13%), Positives = 57/213 (26%), Gaps = 36/213 (16%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
VTG S + +V+ L G +V R+ + L + ++ +L
Sbjct: 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN-DCLTQWRSKGFKVEASVCDLS 67
Query: 69 EEGSFDSAVD--------GCDGVFHTA-----SPVIFLSDNPQADIVDPAVMGTLNVLR- 114
++ + + + A + + I+ ++
Sbjct: 68 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVL 127
Query: 115 --SCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
K VV SS+ L V L + LA
Sbjct: 128 AHPFLKASERGNVVFISSVSGAL--------------AVPYEAVYGATKGAMDQLTRCLA 173
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN 205
E A ++ I + + PG + + +
Sbjct: 174 FEWA-----KDNIRVNGVGPGVIATSLVEMTIQ 201
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.4 bits (91), Expect = 2e-04
Identities = 31/231 (13%), Positives = 63/231 (27%), Gaps = 33/231 (14%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-TEHLRELDGATERLHLFKA 65
E + V V G G + S V+ R + V + N + ++ +
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVT 60
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV----HS 121
+ + D VD V + S + + S
Sbjct: 61 AEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE 120
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
+ L + A+ + + L ++LA + +
Sbjct: 121 GGLLTLAGAKAAL--------------DGTPGMIGYGMAKGAVHQLCQSLAGKNS---GM 163
Query: 182 ENGIDLVAIHPGTVIGPFFQ---PILNFG--------AEVILNLINGDQSF 221
+G +A+ P T+ P + P +F E + I G++
Sbjct: 164 PSGAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITGNKRP 214
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 23/209 (11%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
M+ G K V VTGAS + + L + G V T R + + L+
Sbjct: 11 MLQG----KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASA 66
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
H + + + V + +I N + ++ +R +V+
Sbjct: 67 HYIAGTMEDMTFAEQFVAQAGKLMGGLDMLIL---NHITNTSLNLFHDDIHHVRKSMEVN 123
Query: 121 SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS--------LAKTLA 172
+ VVLT + ML V + P++ YS ++
Sbjct: 124 FLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVA-----AYSASKFALDGFFSSIR 178
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIGPFFQ 201
+E + + + G +
Sbjct: 179 KEYS---VSRVNVSITLCVLGLIDTETAM 204
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 26/212 (12%), Positives = 58/212 (27%), Gaps = 17/212 (8%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKAN 66
++K V +TGA+ + ++L + G + A + E GA H +
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG--PLREAAEAVGA----HPVVMD 57
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ + S + + + + L +V+ +
Sbjct: 58 VADPASVERGFAEALAHL---GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFL 114
Query: 127 LTSSIGAMLLNETPMTPD---VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
+ + + + P + + L +TLA E
Sbjct: 115 VAKAASEAMREKNPGSIVLTASRVYLGNLGQANYAASMAGVVGLTRTLALELG-----RW 169
Query: 184 GIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
GI + + PG + + E +
Sbjct: 170 GIRVNTLAPGFIETRMTAKVPEKVREKAIAAT 201
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 39.2 bits (91), Expect = 3e-04
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 45/215 (20%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-DGATERLHLFKANL 67
+ V +TG + + LV + G V + E L EL + + ++
Sbjct: 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA-----ERLAELETDHGDNVLGIVGDV 60
Query: 68 LEEGSFDSAVD-------------GCDGVFHTASPVIFL----SDNPQADIVDPAVMGTL 110
A G++ ++ ++ L D ++ V G +
Sbjct: 61 RSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYI 120
Query: 111 NVLRSCAK--VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168
+ +++C V S V+ T S P + + L
Sbjct: 121 HAVKACLPALVASRGNVIFTISNAGF----YPNGGGPLYTAAKHA----------IVGLV 166
Query: 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPI 203
+ LA E A + + + G + P
Sbjct: 167 RELAFELAP------YVRVNGVGSGGINSDLRGPS 195
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 38.6 bits (89), Expect = 5e-04
Identities = 34/189 (17%), Positives = 54/189 (28%), Gaps = 11/189 (5%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
VTG S + +V+ L G V R+ E L + +LL
Sbjct: 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD-ECLEIWREKGLNVEGSVCDLL 65
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
D + VF + L +N I A T + +
Sbjct: 66 SRTERDKLMQTVAHVFD--GKLNILVNNAGVVIHKEAKDFTEKDYNII--MGTNFEAAYH 121
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS------LAKTLAEEAAWKFAKE 182
S A L + +V+ + L + S + K+LA E A +
Sbjct: 122 LSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRV 181
Query: 183 NGIDLVAIH 191
N + I
Sbjct: 182 NSVAPGVIL 190
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 38.5 bits (89), Expect = 6e-04
Identities = 39/234 (16%), Positives = 70/234 (29%), Gaps = 45/234 (19%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
GE KV VTGA + + K+L + V R S + E+
Sbjct: 5 YYCGEN--KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD-SVVDEIKSFGYES 61
Query: 61 HLFKANLLEEGSFDSAVDG--------CDGVFHTASPVIFLSDNPQADIVDPAVMGTLNV 112
+ ++ ++ ++ V + L + D + + LN
Sbjct: 62 SGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNS 121
Query: 113 LRSCAKVHSIK-------RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165
L + S + R++ SSI + N + Y
Sbjct: 122 LFYITQPISKRMINNRYGRIINISSIVGLTGN----------------------VGQANY 159
Query: 166 SLAK----TLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
S +K + A + A I + AI PG + I + I++ I
Sbjct: 160 SSSKAGVIGFTKSLAKELASR-NITVNAIAPGFISSDMTDKISEQIKKNIISNI 212
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 38.5 bits (89), Expect = 6e-04
Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 17/204 (8%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
+V VTG S + + + L + G +V R+ + + F+ ++
Sbjct: 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVS 65
Query: 69 EEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS 121
++ D V + A +P + + V
Sbjct: 66 NYEEVKKLLEAVKEKFGKLDTVVNAAG---INRRHPAEEFPLDEFRQVIEVNLFGTYYVC 122
Query: 122 IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAK 181
+ L + + S K L K LA+E
Sbjct: 123 REAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVAS--LTKALAKEWG----- 175
Query: 182 ENGIDLVAIHPGTVIGPFFQPILN 205
GI + I PG + + +
Sbjct: 176 RYGIRVNVIAPGWYRTKMTEAVFS 199
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.001
Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 13/207 (6%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
KV +TG + + LL G R + K + ++H + ++
Sbjct: 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVR 85
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + V V + +N + + P + N ++ + +T
Sbjct: 86 DPDMVQNTVSELIKVAG---HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVT 142
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY-----SLAKTLAEEAAWKFAKEN 183
IG L+ + I + +++K+LA E +
Sbjct: 143 LEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG-----KY 197
Query: 184 GIDLVAIHPGTVIGPFFQPILNFGAEV 210
G+ I PG + L+
Sbjct: 198 GMRFNVIQPGPIKTKGAFSRLDPTGTF 224
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.0 bits (85), Expect = 0.002
Identities = 25/213 (11%), Positives = 56/213 (26%), Gaps = 28/213 (13%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE--RLHLFKAN 66
+ V VTG + + + + L G+ V T R +PK E+D F A
Sbjct: 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAV 67
Query: 67 LLEEGSFD----SAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
+G + +A D + F + + +
Sbjct: 68 EEHQGPVEVLVSNAGLSADAFLMRMTEEKF---EKVINANLTGAFRVAQRASRSMQRNKF 124
Query: 123 KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE 182
R++ S+ + + + + + + +
Sbjct: 125 GRMIFIGSVSGL----WGIGNQANYAASKAGVIGMARS---------------IARELSK 165
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
+ + PG + + + + L I
Sbjct: 166 ANVTANVVAPGYIDTDMTRALDERIQQGALQFI 198
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.9 bits (85), Expect = 0.002
Identities = 27/202 (13%), Positives = 48/202 (23%), Gaps = 30/202 (14%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS 72
VT F L + G+TV + EL+ E + + E
Sbjct: 5 VTNVKHFGGMGSALRLSEAGHTVACHDESF-----KQKDELEAFAETYP--QLKPMSEQE 57
Query: 73 FDSAVD-------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
++ D + + P G + L+
Sbjct: 58 PAELIEAVTSAYGQVDVLVSND--IFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVA 115
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE--- 182
++ I + P + Y+ A+ A A +KE
Sbjct: 116 -----------SQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGE 164
Query: 183 NGIDLVAIHPGTVIGPFFQPIL 204
I + AI P +
Sbjct: 165 YNIPVFAIGPNYLHSEDSPYFY 186
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 36.9 bits (85), Expect = 0.002
Identities = 31/224 (13%), Positives = 57/224 (25%), Gaps = 42/224 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V +TG + + + + + G V REL ++
Sbjct: 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA-ATARELGD---AARYQHLDVT 61
Query: 69 EEGSFDSAVD-------GCDGVFH-----TASPVIFLSDNPQADIVDPAVMGTLNVLRSC 116
E + V DG+ + T + S +V+ + G +++
Sbjct: 62 IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTV 121
Query: 117 AKVHSIK----RVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY-SLAKTL 171
+V SS + + +K L+K
Sbjct: 122 IP-AMKDAGGGSIVNISSAAGL---------------MGLALTSSYGASKWGVRGLSKLA 165
Query: 172 AEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
A E I + ++HPG P E
Sbjct: 166 AVELGTDR-----IRVNSVHPGMTYTPMTAETGIRQGEGNYPNT 204
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 37.1 bits (84), Expect = 0.002
Identities = 25/221 (11%), Positives = 60/221 (27%), Gaps = 16/221 (7%)
Query: 11 VCVTGASGFVASWLVKLLLQR-GYTV----KATVRDPNSPKTEHLRELDGATERLHLFKA 65
V V G +G++ S V+ LL+ ++V S E + ++ K
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+ + D + F + + +G +++ +
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW-----------YSLAKTLAEE 174
+ + + + + + + Y +K +AE
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 175 AAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI 215
A+ GI + + G + + +LI
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLI 225
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 36.6 bits (84), Expect = 0.002
Identities = 29/207 (14%), Positives = 62/207 (29%), Gaps = 18/207 (8%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATE-RLHLFKA 65
++VV +TG + L G + + L+ A + + A
Sbjct: 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62
Query: 66 NLLEEGSFDSAVD-------GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAK 118
++ +E ++ V DG F+ A + + + ++N+
Sbjct: 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLG 122
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWK 178
+ + +++ G + T V + L + A E
Sbjct: 123 LEKVLKIMREQGSGMV-----VNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYG-- 175
Query: 179 FAKENGIDLVAIHPGTVIGPFFQPILN 205
GI + AI PG + P + +
Sbjct: 176 ---RYGIRINAIAPGAIWTPMVENSMK 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.97 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.97 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.95 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.95 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.95 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.95 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.94 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.94 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.94 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.94 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.94 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.94 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.94 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.94 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.94 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.94 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.94 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.94 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.94 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.94 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.94 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.94 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.94 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.94 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.94 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.94 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.94 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.94 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.94 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.93 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.93 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.93 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.93 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.92 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.92 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.92 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.92 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.92 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.92 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.92 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.92 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.92 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.92 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.92 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.91 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.91 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.91 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.9 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.9 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.9 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.89 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.89 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.89 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.88 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.87 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.87 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.86 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.85 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.85 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.85 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.85 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.84 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.83 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.82 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.81 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.79 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.78 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.76 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.74 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.39 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.63 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.55 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.54 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.49 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.43 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.39 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.31 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.27 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.25 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.22 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.21 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.19 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.17 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.16 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.12 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.09 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 98.02 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.02 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.0 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.98 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.96 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.9 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.74 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.7 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.69 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.61 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.61 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.59 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.57 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.54 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.54 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.48 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.43 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.43 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.42 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.42 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.37 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.37 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.35 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.33 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.25 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.21 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.21 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.19 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.13 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.12 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.1 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.09 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.07 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.07 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.98 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.98 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.94 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.9 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.87 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.84 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.83 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.79 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.77 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.74 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.74 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.64 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.61 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.59 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.51 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.51 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.5 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.47 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.46 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.34 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.34 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.2 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.17 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.17 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.15 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.15 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.12 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.11 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.1 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.09 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.07 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.98 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.98 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.86 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.84 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.82 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.82 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.8 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.78 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.7 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.69 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.69 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.66 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.65 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.65 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.62 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.6 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.57 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.52 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.45 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.44 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.43 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.42 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.38 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.34 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.34 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.34 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.27 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.25 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.19 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.14 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.04 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.96 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.96 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.92 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.87 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.85 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.78 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.74 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.72 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.66 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.65 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.62 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.39 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.35 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.29 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.25 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.23 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.17 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.14 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.11 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.95 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.87 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.85 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.83 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 93.74 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.72 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.7 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.65 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.54 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.33 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.18 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.04 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.85 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.72 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.59 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.55 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.54 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.42 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.34 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.17 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 92.16 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.12 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.0 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.97 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.88 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.83 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 91.65 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 91.62 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 91.51 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 91.51 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.42 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 91.37 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.28 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.23 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.18 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 91.16 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.14 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 90.96 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 90.72 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.64 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 90.63 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.35 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.14 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.94 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.77 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 89.76 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.55 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 89.44 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 89.18 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.08 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 88.41 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 88.36 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.26 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 87.96 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 87.95 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.83 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 87.65 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 87.04 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 86.32 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 86.24 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 85.89 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 85.69 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 85.6 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 85.18 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 85.07 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 84.94 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 84.87 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 84.61 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 84.49 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.41 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.03 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 83.77 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 83.33 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.24 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 82.92 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 82.44 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 82.41 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 82.23 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 81.56 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 81.19 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 81.0 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 80.98 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 80.82 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 80.72 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 80.5 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 80.08 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-48 Score=349.70 Aligned_cols=296 Identities=19% Similarity=0.175 Sum_probs=225.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc----cCCCCcEEEEEccCCCccchHHhhC--CCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL----DGATERLHLFKANLLEEGSFDSAVD--GCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~ 82 (322)
|+|||||||||||++|+++|+++||+|++++|..+......+..+ .....+++++++|++|.++++++++ ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 789999999999999999999999999999997543222222111 1224679999999999999999998 4599
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
|||+||.... ....++...+++|+.||.||+++|++.. ++++|||+||. ++||.+. ..+++|+++.+|.
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~-~vYG~~~----~~~~~E~~~~~P~--- 153 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTS-ELYGLVQ----EIPQKETTPFYPR--- 153 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEG-GGGTTCC----SSSBCTTSCCCCC---
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEch-hhhCCCC----CCCcCCCCCCCCC---
Confidence 9999998654 3345567899999999999999999861 33479999998 7777654 6789999988876
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CC--CC---CCCcceeHH
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QS--FA---FPYIFVEIR 231 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~--~~---~~~~~i~~~ 231 (322)
++|+.||.++|++++.+++.++++++++||++||||....... .....+.....+. .. ++ +.++|+|++
T Consensus 154 ---~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~ 230 (357)
T d1db3a_ 154 ---SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (357)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeec
Confidence 7899999999999999999999999999999999997654321 2234444555555 22 22 788999999
Q ss_pred HHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCC--------------------CCCCc----------
Q 020747 232 DVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLR--------------------SGKLE---------- 280 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~--------------------~~~~~---------- 280 (322)
|+|++++.+++++ .++.|+++ ++.+|++|+++.+.+.++.... +....
T Consensus 231 D~~~a~~~~~~~~-~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (357)
T d1db3a_ 231 DYVKMQWMMLQQE-QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPR 309 (357)
T ss_dssp HHHHHHHHTTSSS-SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGG
T ss_pred hHHHHHHHHHhCC-CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccc
Confidence 9999999999875 35677665 7899999999999999862100 00000
Q ss_pred ---cCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHH
Q 020747 281 ---EKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLM 316 (322)
Q Consensus 281 ---~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~ 316 (322)
+.+.....+|++|+ +.|||+| ++++|+|++++++..
T Consensus 310 ~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l 350 (357)
T d1db3a_ 310 YFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDL 350 (357)
T ss_dssp GCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred cCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence 11223456799999 8899999 999999999987643
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=5e-48 Score=340.54 Aligned_cols=296 Identities=18% Similarity=0.218 Sum_probs=238.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEE------EEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVK------ATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|||||||||||||++|+++|+++||+|. .+++.........+... ....+++++.+|+++..........+|.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d~ 79 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV-DADPRLRFVHGDIRDAGLLARELRGVDA 79 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGG-TTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhh-hcCCCeEEEEeccccchhhhccccccce
Confidence 4799999999999999999999998654 34433222222222222 2246799999999999999988999999
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
|+|+|+.... .........+++|+.|+.+++++|++. ++++|||+||+ .+|+... ..+++|+++..|.
T Consensus 80 vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~-~~yg~~~----~~~~~E~~~~~p~----- 148 (322)
T d1r6da_ 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTN-QVYGSID----SGSWTESSPLEPN----- 148 (322)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEG-GGGCCCS----SSCBCTTSCCCCC-----
T ss_pred EEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecc-eeecCCC----CCCCCCCCCCCCC-----
Confidence 9999986433 223445688899999999999999998 88999999999 6666654 6789999998887
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYA 236 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~ 236 (322)
++|+.+|.++|.+++.++++++++++++||++||||.+... .....++.++..|+ .+++ +.++|+|++|+|++
T Consensus 149 -~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~a 226 (322)
T d1r6da_ 149 -SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRG 226 (322)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcC-cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHH
Confidence 77999999999999999999999999999999999987653 34566777888877 3443 88999999999999
Q ss_pred HHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCC-CCCC--CccCCCCccccchHHH-HhhCCcc-cchhhhHHH
Q 020747 237 HIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTLL-RSGK--LEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRG 310 (322)
Q Consensus 237 ~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~-~~~~--~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~ 310 (322)
++.+++++..++.||++ ++.+++.|+++.+.+.++... .... ..........+|++|+ +.|||+| ++++|+|++
T Consensus 227 i~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~ 306 (322)
T d1r6da_ 227 IALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLAR 306 (322)
T ss_dssp HHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHH
T ss_pred HHHHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHH
Confidence 99999998777788766 789999999999999987431 1111 1133445577999999 8899999 999999999
Q ss_pred HHHHHHHc
Q 020747 311 CIESLMEK 318 (322)
Q Consensus 311 ~~~~~~~~ 318 (322)
+++|++++
T Consensus 307 ~i~w~~~n 314 (322)
T d1r6da_ 307 TVRWYREN 314 (322)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999874
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.3e-47 Score=342.87 Aligned_cols=301 Identities=16% Similarity=0.226 Sum_probs=229.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc-ChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP-KTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
|||||||||||||++|+++|+++||+|++..++.+.. ....+..+. ...+++++.+|++|+..++++++ .+|+|||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDIS-ESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTT-TCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhh-hcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 4799999999999999999999999865544433222 222233222 24689999999999999999887 5899999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcC--------CccEEEEecchhhhccCCCCCC------CCccccCC
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVH--------SIKRVVLTSSIGAMLLNETPMT------PDVVIDET 150 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~--------~~~~~i~~SS~~~~~~~~~~~~------~~~~~~E~ 150 (322)
+||.... ....++...+++|+.|+.+++++|++.. ++++||++||. ++||...... ......|+
T Consensus 80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~~~~~~e~ 158 (361)
T d1kewa_ 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTD-EVYGDLPHPDEVENSVTLPLFTET 158 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEG-GGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccc-eeeCCCccCCccccccCCCCcccC
Confidence 9997543 2223457899999999999999998751 34599999999 6666543100 01112334
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC---CCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA---FPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~---~~~ 225 (322)
++..|. +.||.||.++|.++..+++.++++++++||++||||.+... ...+.++.+++.|++ +++ +.|
T Consensus 159 ~~~~p~------s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-~~i~~~i~~~~~g~~~~v~g~g~~~r 231 (361)
T d1kewa_ 159 TAYAPS------SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE-KLIPLVILNALEGKPLPIYGKGDQIR 231 (361)
T ss_dssp SCCCCC------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT-SHHHHHHHHHHHTCCEEEETTSCCEE
T ss_pred CCCCCC------CHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcC-cHHHHHHHHHHcCCCcEEeCCCCeEE
Confidence 444444 78999999999999999999999999999999999987653 345677888888873 333 889
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC---C--CCCCC-----ccCCCCccccchHHH
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL---L--RSGKL-----EEKYQPTIKVSQERA 294 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~---~--~~~~~-----~~~~~~~~~~~~~k~ 294 (322)
+|+|++|+|++++.++++...++.||++ +...++.|+++.+.+.++.. . ..... .+.+...+.+|++|+
T Consensus 232 ~~i~v~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (361)
T d1kewa_ 232 DWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKI 311 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHH
T ss_pred eCEEHHHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHH
Confidence 9999999999999999988777788776 67899999999998865311 0 00000 023455678899999
Q ss_pred -HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 295 -KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 295 -~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+.|||+| ++++|+|+++++||+.+
T Consensus 312 ~~~lgw~P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 312 SRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHh
Confidence 7899999 99999999999999765
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9e-48 Score=337.30 Aligned_cols=294 Identities=18% Similarity=0.230 Sum_probs=223.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|||||||||||||++|+++|+++||+|++++|..+... ..+... ....++.....|+. +.++.++|+|||+||
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~-~~~~~~-~~~~~~d~~~~~~~-----~~~~~~~d~VihlAa 74 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK-RNVEHW-IGHENFELINHDVV-----EPLYIEVDQIYHLAS 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-GGTGGG-TTCTTEEEEECCTT-----SCCCCCCSEEEECCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCH-HHHHHh-cCCCceEEEehHHH-----HHHHcCCCEEEECcc
Confidence 79999999999999999999999999999987543322 112111 11234555555554 445668999999999
Q ss_pred Cccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHH
Q 020747 89 PVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 167 (322)
Q Consensus 89 ~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~ 167 (322)
.... .+..++.+.+++|+.|+.+++++|++. ++ ++||+||. ++|+... ..+++|+...... +..+.++|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~-~vy~~~~----~~~~~e~~~~~~~-~~~p~~~Y~~ 146 (312)
T d2b69a1 75 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTS-EVYGDPE----VHPQSEDYWGHVN-PIGPRACYDE 146 (312)
T ss_dssp CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEG-GGGBSCS----SSSBCTTCCCBCC-SSSTTHHHHH
T ss_pred cCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEECh-heecCCC----CCCCCccccCCCC-CCCCccHHHH
Confidence 7643 234456788999999999999999997 65 89999998 6666554 4456665432211 1123378999
Q ss_pred HHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC-ccHHHHHHHHcCCC--CCC---CCCcceeHHHHHHHHHHhh
Q 020747 168 AKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN-FGAEVILNLINGDQ--SFA---FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 168 sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~-~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~a~~~~~~~ 241 (322)
||.++|.+++.+++.+|++++++||++||||+...... ..+.++.+++.|++ +++ +.++|+|++|++++++.++
T Consensus 147 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~ 226 (312)
T d2b69a1 147 GKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALM 226 (312)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765433 35677888888873 333 7899999999999999999
Q ss_pred cCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCC--CCccCCCCccccchHHH-HhhCCcc-cchhhhHHHHHHHHH
Q 020747 242 EVPKASGRYLLA-GSVAQHSDILKFLREHYPTLLRSG--KLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGCIESLM 316 (322)
Q Consensus 242 ~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~~ 316 (322)
+.+ .++.|+++ ++..+++++++.+++.++...... .....+......|++|+ +.|||+| ++++++|+++++||+
T Consensus 227 ~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~ 305 (312)
T d2b69a1 227 NSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFR 305 (312)
T ss_dssp TSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred hhc-cCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 775 45678665 789999999999999986432111 11123445677899999 8899999 999999999999997
Q ss_pred Hc
Q 020747 317 EK 318 (322)
Q Consensus 317 ~~ 318 (322)
.+
T Consensus 306 ~~ 307 (312)
T d2b69a1 306 KE 307 (312)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=4.8e-47 Score=336.84 Aligned_cols=299 Identities=20% Similarity=0.170 Sum_probs=239.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhcc--CCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELD--GATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+.|+|||||||||||++|+++|+++||+|++++|....... ....... .....++++.+|+.|...+......++.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~ 94 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY 94 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence 45899999999999999999999999999999985433221 1111111 1135689999999999999988899999
Q ss_pred EEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccccc
Q 020747 83 VFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 83 vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (322)
|+|+|+.... ....++...+++|+.|+.+++++|.+. ++++|||+||. ++|+... ..+++|+++.+|.
T Consensus 95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~-~vyg~~~----~~~~~E~~~~~p~----- 163 (341)
T d1sb8a_ 95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASS-STYGDHP----GLPKVEDTIGKPL----- 163 (341)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEG-GGGTTCC----CSSBCTTCCCCCC-----
T ss_pred cccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccc-eeeCCCC----CCCccCCCCCCCC-----
Confidence 9999986432 234556789999999999999999998 88999999999 6676654 6789999998887
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC---ccHHHHHHHHcCCC--CCC---CCCcceeHHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN---FGAEVILNLINGDQ--SFA---FPYIFVEIRDV 233 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~---~~~~~~~~~~~g~~--~~~---~~~~~i~~~D~ 233 (322)
+.|+.+|.++|+++..+++.++++++++||++||||...+... ....++.+++.|++ +++ +.++|+|++|+
T Consensus 164 -~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~ 242 (341)
T d1sb8a_ 164 -SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 242 (341)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEecc
Confidence 7899999999999999999999999999999999998765432 23566777888873 333 78999999999
Q ss_pred HHHHHHhhcCCC--CCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCc-------cCCCCccccchHHH-HhhCCcc-
Q 020747 234 VYAHIRALEVPK--ASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKLE-------EKYQPTIKVSQERA-KSLGINF- 301 (322)
Q Consensus 234 a~~~~~~~~~~~--~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~k~-~~lg~~~- 301 (322)
|+++..++..+. .++.|+++ ++..|++|+++.|.+..+...++.... ..+.....+|++|+ +.|||+|
T Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~ 322 (341)
T d1sb8a_ 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPK 322 (341)
T ss_dssp HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCC
T ss_pred chhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcC
Confidence 999999887653 23478766 688999999999998875322211111 23344567899999 7799999
Q ss_pred cchhhhHHHHHHHHHH
Q 020747 302 TPWEVGVRGCIESLME 317 (322)
Q Consensus 302 ~~~~~~l~~~~~~~~~ 317 (322)
++++++|+++++||+.
T Consensus 323 ~sl~~gi~~ti~wy~~ 338 (341)
T d1sb8a_ 323 YDVSAGVALAMPWYIM 338 (341)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999986
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.1e-45 Score=325.31 Aligned_cols=296 Identities=19% Similarity=0.138 Sum_probs=233.9
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|+|||||||||||++|+++|+++||+|++++|..+......+..+.. .++++++++|++|...+.+.+. ..++++|+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 79 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGI-EGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTC-GGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcc-cCCcEEEEccccChHHhhhhhccccccccccc
Confidence 68999999999999999999999999999999876544444444432 4679999999999999988776 46889999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
|+.... ....++...++.|+.|+.+++++|++....++|++.||. ++|+... ....+|+++..|. ++|
T Consensus 80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~-~~~~~~~----~~~~~E~~~~~p~------~~Y 148 (321)
T d1rpna_ 80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTS-EMFGLIQ----AERQDENTPFYPR------SPY 148 (321)
T ss_dssp CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEG-GGGCSCS----SSSBCTTSCCCCC------SHH
T ss_pred cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccch-hhcCccc----CCCCCCCCCcccc------Chh
Confidence 876543 334455788999999999999999998334577777777 7776654 6678899988877 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CCC--C---CCCcceeHHHHHHHH
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QSF--A---FPYIFVEIRDVVYAH 237 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~~--~---~~~~~i~~~D~a~~~ 237 (322)
+.+|.++|.++..+++.++++++++||+++|||....... .....+.+...+. +.+ + +.++|+|++|+|+++
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~ 228 (321)
T d1rpna_ 149 GVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAM 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHH
Confidence 9999999999999999999999999999999997654321 2234455555555 332 2 788999999999999
Q ss_pred HHhhcCCCCCccE-EEecCCCCHHHHHHHHHHhCCCCC--C---C-CCCccCCCCccccchHHH-HhhCCcc-cchhhhH
Q 020747 238 IRALEVPKASGRY-LLAGSVAQHSDILKFLREHYPTLL--R---S-GKLEEKYQPTIKVSQERA-KSLGINF-TPWEVGV 308 (322)
Q Consensus 238 ~~~~~~~~~~g~~-~~~~~~~~~~e~~~~i~~~~~~~~--~---~-~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l 308 (322)
+.+++++.. +.| +++++..++.++++.+.+..+... + . ....+.+...+..|++|+ +.|||+| ++++|+|
T Consensus 229 ~~~~~~~~~-~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i 307 (321)
T d1rpna_ 229 WLMLQQDKA-DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELI 307 (321)
T ss_dssp HHHHHSSSC-CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHH
T ss_pred HHHHhcCCc-CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHH
Confidence 999998754 456 455789999999999999886421 1 1 011123345677899999 7799999 9999999
Q ss_pred HHHHHHHHH
Q 020747 309 RGCIESLME 317 (322)
Q Consensus 309 ~~~~~~~~~ 317 (322)
+++++|+..
T Consensus 308 ~~tv~~~l~ 316 (321)
T d1rpna_ 308 RMMVEADLR 316 (321)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.3e-45 Score=328.19 Aligned_cols=299 Identities=17% Similarity=0.200 Sum_probs=231.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC-c-ChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS-P-KTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
||+|||||||||||++|+++|+++||+|.++.++... . ........ ...+++++.+|++|.+.+..+++++|.|+|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~--~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~ 79 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI--LGDRVELVVGDIADAELVDKLAAKADAIVH 79 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG--CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh--hcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence 3789999999999999999999999987666654321 1 11122222 246899999999999999999999999999
Q ss_pred cccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCC--------CCCCCccccCCCCCCcc
Q 020747 86 TASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNET--------PMTPDVVIDETWFSNPV 156 (322)
Q Consensus 86 ~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~--------~~~~~~~~~E~~~~~~~ 156 (322)
+|+.... ....++.+.+++|+.|+.++++++... + .++|++||. ++|+... .......++|+++..|.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~-~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~ 156 (346)
T d1oc2a_ 80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTD-EVYGDLPLREDLPGHGEGPGEKFTAETNYNPS 156 (346)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEG-GGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCC
T ss_pred hhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccc-eEecccCccccccccccCcccccccCCCCCCC
Confidence 9987543 223445788999999999999999997 5 578999998 5555321 01113456666666665
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIR 231 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~ 231 (322)
+.||.+|.++|.+++.++++++++++++||++||||..... ......+.....|. .+++ +.++|+|++
T Consensus 157 ------s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~-~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~ 229 (346)
T d1oc2a_ 157 ------SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE-KFIPRQITNILAGIKPKLYGEGKNVRDWIHTN 229 (346)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT-SHHHHHHHHHHHTCCCEEETTSCCEEECEEHH
T ss_pred ------CHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc-chhHHHHHHHHcCCceeEeCCCCccccccchh
Confidence 78999999999999999999999999999999999976543 33455566666666 3333 889999999
Q ss_pred HHHHHHHHhhcCCCCCccEEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCc---cCCCCccccchHHH-HhhCCcc-c-ch
Q 020747 232 DVVYAHIRALEVPKASGRYLL-AGSVAQHSDILKFLREHYPTLLRSGKLE---EKYQPTIKVSQERA-KSLGINF-T-PW 304 (322)
Q Consensus 232 D~a~~~~~~~~~~~~~g~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~k~-~~lg~~~-~-~~ 304 (322)
|+|++++.+++++..++.|++ +++..++.++++.|.+.++......... ......+.+|++|+ +.|||+| . +|
T Consensus 230 D~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l 309 (346)
T d1oc2a_ 230 DHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDF 309 (346)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCH
T ss_pred hHHHHHHHHHhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCH
Confidence 999999999998888887754 5789999999999999986432221111 23344567899999 8899999 5 69
Q ss_pred hhhHHHHHHHHHHc
Q 020747 305 EVGVRGCIESLMEK 318 (322)
Q Consensus 305 ~~~l~~~~~~~~~~ 318 (322)
+++|+++++|++++
T Consensus 310 ~e~i~~ti~w~~~n 323 (346)
T d1oc2a_ 310 SEGLEETIQWYTDN 323 (346)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.4e-45 Score=328.49 Aligned_cols=296 Identities=18% Similarity=0.151 Sum_probs=225.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++|||||||||||||++|+++|+++||+|++++|......... ....++..+|+++.+.+..+++++|+|||+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~ 86 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED-------MFCDEFHLVDLRVMENCLKVTEGVDHVFNL 86 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG-------GTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhh-------cccCcEEEeechhHHHHHHHhhcCCeEeec
Confidence 5789999999999999999999999999999988654432211 133578889999999999999999999999
Q ss_pred ccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCC---CccccCCCCCCccccccc
Q 020747 87 ASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTP---DVVIDETWFSNPVLCKEN 161 (322)
Q Consensus 87 A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~---~~~~~E~~~~~~~~~~~~ 161 (322)
|+.... .....+...+..|+.++.+++++|++. ++++||++||. .+|+....... .....|..+..|.
T Consensus 87 a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~vk~~i~~SS~-~~~~~~~~~~~~~~~~~~~e~~~~~p~----- 159 (363)
T d2c5aa1 87 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSA-CIYPEFKQLETTNVSLKESDAWPAEPQ----- 159 (363)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEG-GGSCGGGSSSSSSCEECGGGGSSBCCS-----
T ss_pred ccccccccccccccccccccccchhhHHHHhHHhh-Ccccccccccc-ccccccccccccccccccccCCcCCCC-----
Confidence 986543 224556788999999999999999998 89999999999 55554431000 1122333444443
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCcc---HHHH-HHHHcCC--CCCC---CCCcceeHHH
Q 020747 162 KEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG---AEVI-LNLINGD--QSFA---FPYIFVEIRD 232 (322)
Q Consensus 162 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~---~~~~-~~~~~g~--~~~~---~~~~~i~~~D 232 (322)
++|+.+|.++|++++.+++++|++++++||+++||+.+....... .... ....... ..++ +.++|+|++|
T Consensus 160 -~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 160 -DAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 789999999999999999999999999999999999765443221 1112 2222222 2222 7899999999
Q ss_pred HHHHHHHhhcCCCCCccEEEe-cCCCCHHHHHHHHHHhCCCC-CCCCCCccCCCCccccchHHH-HhhCCcc-cchhhhH
Q 020747 233 VVYAHIRALEVPKASGRYLLA-GSVAQHSDILKFLREHYPTL-LRSGKLEEKYQPTIKVSQERA-KSLGINF-TPWEVGV 308 (322)
Q Consensus 233 ~a~~~~~~~~~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l 308 (322)
+++++..+++.+ .++.|+++ +..+++.|+++++.+..+.. ++.............+|++|+ +.|||+| ++++|+|
T Consensus 239 ~~~~~~~~~~~~-~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi 317 (363)
T d2c5aa1 239 CVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGL 317 (363)
T ss_dssp HHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHhCC-CCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCCCCccccccCHHHHHHHhCCCCCCCHHHHH
Confidence 999999999875 46678665 78999999999999988743 111111133455677899999 8899999 9999999
Q ss_pred HHHHHHHHHc
Q 020747 309 RGCIESLMEK 318 (322)
Q Consensus 309 ~~~~~~~~~~ 318 (322)
+++++|++++
T Consensus 318 ~~ti~w~~~~ 327 (363)
T d2c5aa1 318 RITYFWIKEQ 327 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999753
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-45 Score=323.96 Aligned_cols=295 Identities=17% Similarity=0.175 Sum_probs=220.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
|||||||||||||++|+++|+++||+|++++|....... ...+... ..+++++++|++|.+.+.++++ ++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 479999999999999999999999999999875433222 1111221 3578999999999999999988 799999
Q ss_pred EcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC-CCCcccccccc
Q 020747 85 HTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW-FSNPVLCKENK 162 (322)
Q Consensus 85 h~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~-~~~~~~~~~~~ 162 (322)
|+||.... .+..++...+++|+.||++++++|++. +++++|++||. ++|+... ..+..|+. ...|.
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~-~vy~~~~----~~~~~e~~~~~~p~------ 146 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSA-TVYGDQP----KIPYVESFPTGTPQ------ 146 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEG-GGGCSCC----SSSBCTTSCCCCCS------
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcc-eEEcccc----ccccccccccCCCc------
Confidence 99997543 223345789999999999999999998 89999999998 5665443 34444443 33344
Q ss_pred hhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCC--------Ccc-HHHHHHHHcCC-CC--C--------
Q 020747 163 EWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPIL--------NFG-AEVILNLINGD-QS--F-------- 221 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~--------~~~-~~~~~~~~~g~-~~--~-------- 221 (322)
++|+.+|.++|.++..+..++ +++++++||+++|||...... ... ..++..+..+. ++ +
T Consensus 147 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~ 226 (338)
T d1udca_ 147 SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTED 226 (338)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTT
T ss_pred chHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCC
Confidence 679999999999999777664 899999999999998654221 112 22333333322 11 1
Q ss_pred C-CCCcceeHHHHHHHHHHhhcCC---CCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC---ccCCCCccccchHH
Q 020747 222 A-FPYIFVEIRDVVYAHIRALEVP---KASGRYLLA-GSVAQHSDILKFLREHYPTLLRSGKL---EEKYQPTIKVSQER 293 (322)
Q Consensus 222 ~-~~~~~i~~~D~a~~~~~~~~~~---~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~k 293 (322)
+ +.++|+|++|+++++..+.... ..+++||++ ++++|+.|+++.+.+..+... +... .......+.+|++|
T Consensus 227 g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d~~k 305 (338)
T d1udca_ 227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPV-NYHFAPRREGDLPAYWADASK 305 (338)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCC-CEEEECCCTTCCSBCCBCCHH
T ss_pred CCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCC-ceEECCCCCCCCCEeeECHHH
Confidence 2 6789999999999888866532 222378776 578999999999999986321 1111 12234566789999
Q ss_pred H-HhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 294 A-KSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 294 ~-~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
+ +.|||+| ++++|+|+++++|++.+
T Consensus 306 ~~~~lgwkp~~~l~egi~~ti~w~~~~ 332 (338)
T d1udca_ 306 ADRELNWRVTRTLDEMAQDTWHWQSRH 332 (338)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCcCCCHHHHHHHHHHHHHhc
Confidence 9 7899999 99999999999999987
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-44 Score=319.83 Aligned_cols=295 Identities=16% Similarity=0.111 Sum_probs=223.2
Q ss_pred cEE-EEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-----CCCcEEEEEccCCCccchHHhhC--CC
Q 020747 9 KVV-CVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATERLHLFKANLLEEGSFDSAVD--GC 80 (322)
Q Consensus 9 ~~i-lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~--~~ 80 (322)
||| ||||||||||+||+++|+++||+|++++|..+......+..+.. ...+++++++|++|++.+..++. ++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 568 99999999999999999999999999999765433322222211 13468999999999999999886 57
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCc---cEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSI---KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~---~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
++|+|+|+.... ....+....+++|+.||.++++++++. ++ ++|||+||. ++||... ..+++|+++.+|.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~~~~i~~SS~-~vyg~~~----~~~~~E~~~~~P~ 154 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTS-ELYGKVQ----EIPQKETTPFYPR 154 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEG-GGTCSCS----SSSBCTTSCCCCC
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHc-CCCCCcEEEEecch-heecCCC----CCCCCCCCCCCCC
Confidence 899999986533 223344677899999999999999987 43 489999998 7777654 6689999998876
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHH-HHcCCCC--CC---CCCcce
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILN-LINGDQS--FA---FPYIFV 228 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~-~~~g~~~--~~---~~~~~i 228 (322)
++||.||.++|+++..+++.++++++++||+++|||....... .....+.. ...+.+. ++ +.++|+
T Consensus 155 ------~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i 228 (347)
T d1t2aa_ 155 ------SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWG 228 (347)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCE
T ss_pred ------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeee
Confidence 7899999999999999999999999999999999997554321 11222223 3333322 22 789999
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCCCCCC----c-------------------cCCCC
Q 020747 229 EIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLRSGKL----E-------------------EKYQP 285 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~----~-------------------~~~~~ 285 (322)
|++|++++++.++++......+...+...++++....+....+........ . +....
T Consensus 229 ~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~ 308 (347)
T d1t2aa_ 229 HAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVD 308 (347)
T ss_dssp EHHHHHHHHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCC
T ss_pred EecHHHHHHHHHhhcCCCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcC
Confidence 999999999999998654433455578899999999998887642100000 0 11233
Q ss_pred ccccchHHH-HhhCCcc-cchhhhHHHHHHHH
Q 020747 286 TIKVSQERA-KSLGINF-TPWEVGVRGCIESL 315 (322)
Q Consensus 286 ~~~~~~~k~-~~lg~~~-~~~~~~l~~~~~~~ 315 (322)
.+.+|++|+ +.|||+| ++|+|+|++++++.
T Consensus 309 ~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~ 340 (347)
T d1t2aa_ 309 FLQGDCTKAKQKLNWKPRVAFDELVREMVHAD 340 (347)
T ss_dssp BCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHH
T ss_pred EeeECHHHHHHHHCCCcCCCHHHHHHHHHHHH
Confidence 456799999 8899999 99999999998653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.8e-44 Score=315.95 Aligned_cols=297 Identities=16% Similarity=0.101 Sum_probs=228.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-----CCCCcEEEEEccCCCccchHHhhC--CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-----GATERLHLFKANLLEEGSFDSAVD--GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~~~~~~~~~~~--~~d 81 (322)
|++||||||||||+||+++|+++||+|++++|..+....+.+..+. .....++++.+|+++.+.+...++ ++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 7999999999999999999999999999999976532222222221 123568899999999999998876 689
Q ss_pred EEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 82 GVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 82 ~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
+|||+||.... ...+.+...++.|+.++.+++++++.. ....++++.||. .+++.. ..+++|+++..|.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~-~~~~~~-----~~~~~E~~~~~p~ 155 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSS-EMFGST-----PPPQSETTPFHPR 155 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEG-GGGTTS-----CSSBCTTSCCCCC
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccc-eecccC-----CCCCCCCCCCCCc
Confidence 99999997544 223455788999999999999999764 123467777776 555443 5678999988876
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-C-C-C--C-CCCcce
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-Q-S-F--A-FPYIFV 228 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~-~-~--~-~~~~~i 228 (322)
+.|+.+|.++|.++..+++.++++++++||++||||....... .....+.+...+. + + . + +.++|+
T Consensus 156 ------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~ 229 (339)
T d1n7ha_ 156 ------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWG 229 (339)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECE
T ss_pred ------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccce
Confidence 7899999999999999999999999999999999997654321 1222233333344 2 2 2 2 889999
Q ss_pred eHHHHHHHHHHhhcCCCCCccEEEecCCCCHHHHHHHHHHhCCCCCC--C---C-CCccCCCCccccchHHH-HhhCCcc
Q 020747 229 EIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYPTLLR--S---G-KLEEKYQPTIKVSQERA-KSLGINF 301 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~--~---~-~~~~~~~~~~~~~~~k~-~~lg~~~ 301 (322)
|++|+|+++..+++++...+.++..+...+..++++.+.+..+.... . . ...+.....+..|++|+ +.|||+|
T Consensus 230 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P 309 (339)
T d1n7ha_ 230 FAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKP 309 (339)
T ss_dssp EHHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCC
T ss_pred eeehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCc
Confidence 99999999999999987666777778999999999999999874311 1 0 11123345567799999 8899999
Q ss_pred -cchhhhHHHHHHHHHH
Q 020747 302 -TPWEVGVRGCIESLME 317 (322)
Q Consensus 302 -~~~~~~l~~~~~~~~~ 317 (322)
++++|+|+++++|+..
T Consensus 310 ~~~le~gi~~ti~~~~~ 326 (339)
T d1n7ha_ 310 QVGFEKLVKMMVDEDLE 326 (339)
T ss_dssp CSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 9999999999999864
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-44 Score=316.37 Aligned_cols=304 Identities=17% Similarity=0.172 Sum_probs=225.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|.|||||||||||++|+++|+++|++|+++++..................+++++++|++|.++++.+++ ++|+|||+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 6799999999999999999999999999998654332221111111113568999999999999999887 78999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... .....+..++.+|+.|+.+++++|++. ++++||++||. .+|+.........+++|+.+..|. ++|
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~-~vyg~~~~~~~~~~~~e~~~~~p~------~~Y 153 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSA-TVYGDATRFPNMIPIPEECPLGPT------NPY 153 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEG-GGGCCGGGSTTCCSBCTTSCCCCC------SHH
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecce-eeecCcccCCCCCccccccCCCCC------Chh
Confidence 997643 223345688999999999999999998 89999999999 566554333335678888887776 789
Q ss_pred HHHHHHHHHHHHHHHHH--cCccEEEEcCCCccCCCCCCCC--------CccHHHHHHHHcCC--CC--CC---------
Q 020747 166 SLAKTLAEEAAWKFAKE--NGIDLVAIHPGTVIGPFFQPIL--------NFGAEVILNLINGD--QS--FA--------- 222 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~--~~~~~~~~rp~~v~G~~~~~~~--------~~~~~~~~~~~~g~--~~--~~--------- 222 (322)
+.||.++|++++.+.+. ++++++++||+++||+...... ......+.+...+. ++ ++
T Consensus 154 ~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~ 233 (347)
T d1z45a2 154 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 233 (347)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSS
T ss_pred HhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCc
Confidence 99999999999998765 4899999999999997542211 12233333433332 22 21
Q ss_pred CCCcceeHHHHHHHHHHhhcCC-------CCCccEEEe-cCCCCHHHHHHHHHHhCCCCCCCC--CCccCCCCccccchH
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP-------KASGRYLLA-GSVAQHSDILKFLREHYPTLLRSG--KLEEKYQPTIKVSQE 292 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~-------~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 292 (322)
..++++++.|++++++.+++.. ...+.||++ ++++|+.|+++.+.+..+...... .....+.....+|++
T Consensus 234 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~s 313 (347)
T d1z45a2 234 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPD 313 (347)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCH
T ss_pred eeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHH
Confidence 5678999999999998887531 123368776 789999999999999987432111 111234456678999
Q ss_pred HH-HhhCCcc-cchhhhHHHHHHHHHHcCC
Q 020747 293 RA-KSLGINF-TPWEVGVRGCIESLMEKGF 320 (322)
Q Consensus 293 k~-~~lg~~~-~~~~~~l~~~~~~~~~~~~ 320 (322)
|+ +.|||+| ++++|+|+++++|+++++.
T Consensus 314 k~~~~lGw~p~~~lee~i~~ti~w~~~np~ 343 (347)
T d1z45a2 314 RAKRELKWQTELQVEDSCKDLWKWTTENPF 343 (347)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHhChh
Confidence 99 8899999 9999999999999998753
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.3e-43 Score=311.28 Aligned_cols=298 Identities=17% Similarity=0.236 Sum_probs=221.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH-hhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS-AVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~vih~ 86 (322)
|||||||||||||++|+++|+++| ++|+++++..... ..+. ...+++++++|+++.+++.+ +.+++|+|||+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~-----~~~~-~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~ 74 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI-----SRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG-----GGGT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch-----hhhc-cCCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence 479999999999999999999999 5899998764322 1111 14679999999999877654 66789999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcc-cccccchh
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV-LCKENKEW 164 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~-~~~~~~~~ 164 (322)
|+.... .....+...+++|+.|+.+++++|.+. +. +++++||. .+|+... ....+|..+..+. ....+.+.
T Consensus 75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~-~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~ 147 (342)
T d2blla1 75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTS-EVYGMCS----DKYFDEDHSNLIVGPVNKPRWI 147 (342)
T ss_dssp BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCG-GGGBTCC----CSSBCTTTCCCBCCCTTCGGGH
T ss_pred cccccccccccCCccccccccccccccccccccc-cc-cccccccc-ccccccc----ccccccccccccccccCCCcch
Confidence 997543 223445678999999999999999986 54 56788887 5554443 3333443322221 11223367
Q ss_pred HHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC-------CccHHHHHHHHcCCC--CCC---CCCcceeHHH
Q 020747 165 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL-------NFGAEVILNLINGDQ--SFA---FPYIFVEIRD 232 (322)
Q Consensus 165 Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~-------~~~~~~~~~~~~g~~--~~~---~~~~~i~~~D 232 (322)
|+.||.++|+++..+++.+|++++++||+.+|||...... .....++.+++.|++ +++ +.++|+|++|
T Consensus 148 Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D 227 (342)
T d2blla1 148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred hhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeeccccc
Confidence 9999999999999999999999999999999999654432 123566777888873 233 7899999999
Q ss_pred HHHHHHHhhcCCC--CCc-cEEEe-cC-CCCHHHHHHHHHHhCCCCC----CCCCCc-------------cCCCCccccc
Q 020747 233 VVYAHIRALEVPK--ASG-RYLLA-GS-VAQHSDILKFLREHYPTLL----RSGKLE-------------EKYQPTIKVS 290 (322)
Q Consensus 233 ~a~~~~~~~~~~~--~~g-~~~~~-~~-~~~~~e~~~~i~~~~~~~~----~~~~~~-------------~~~~~~~~~~ 290 (322)
+|+++..+++++. ..| .||++ ++ .+|++|+++.|.+.++... +|.... ..+.....+|
T Consensus 228 ~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 307 (342)
T d2blla1 228 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPS 307 (342)
T ss_dssp HHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBC
T ss_pred ccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccC
Confidence 9999999998742 334 78875 54 5799999999999875321 221111 1122344679
Q ss_pred hHHH-HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 291 QERA-KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 291 ~~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
++|+ +.|||+| ++++|+|+++++||+.+.
T Consensus 308 ~~k~~~~lgw~P~~sleegl~~ti~~y~~~~ 338 (342)
T d2blla1 308 IRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338 (342)
T ss_dssp CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCcCCCHHHHHHHHHHHHHhCc
Confidence 9999 8899999 999999999999998754
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=7.1e-43 Score=309.88 Aligned_cols=308 Identities=31% Similarity=0.413 Sum_probs=227.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
..++|+|||||||||||++|+++|+++||+|++++|+.++... ...............+.+|++|.+.+..++.++|+|
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v 87 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence 3457999999999999999999999999999999997644321 111111222344566889999999999999999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCC---------
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSN--------- 154 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~--------- 154 (322)
+|+|+.... ..++...++.|+.||.+++++|++..++++||++||+.++++.... ......+|+.+..
T Consensus 88 ~~~a~~~~~--~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~ 164 (342)
T d1y1pa1 88 AHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPN-VEGIYLDEKSWNLESIDKAKTL 164 (342)
T ss_dssp EECCCCCSC--CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTT-CCCCEECTTCCCHHHHHHHHHS
T ss_pred hhhcccccc--cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCC-CCCccccccccccccccccccc
Confidence 999987643 3445678899999999999999997679999999998555443321 1133344433211
Q ss_pred -cccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-CCC--C-CCC
Q 020747 155 -PVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-QSF--A-FPY 225 (322)
Q Consensus 155 -~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~~~--~-~~~ 225 (322)
...+..+.++|+.+|..+|.+++.+++.+ +++++++||+.+|||...+... ....++..+..|. ... . +.+
T Consensus 165 ~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~ 244 (342)
T d1y1pa1 165 PESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQ 244 (342)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSE
T ss_pred cccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccce
Confidence 11111223679999999999999999876 5788999999999997554432 2345666677776 222 2 778
Q ss_pred cceeHHHHHHHHHHhhcCCCCCccE-EEecCCCCHHHHHHHHHHhCCCCCCCCCCccCCCCcccc----chHHHHhhCCc
Q 020747 226 IFVEIRDVVYAHIRALEVPKASGRY-LLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKV----SQERAKSLGIN 300 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~~~g~~-~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~k~~~lg~~ 300 (322)
+|+|++|+|++++.+++++...|.| +++++.++++|++++|.+.+|...+|............+ +.++++.|||.
T Consensus 245 ~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~k~lg~~ 324 (342)
T d1y1pa1 245 YYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRP 324 (342)
T ss_dssp EEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHHHHHHHTTCC
T ss_pred eeeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHHHHHHHHcCCC
Confidence 9999999999999999988777755 666889999999999999997666665443222222222 23444789999
Q ss_pred c-cchhhhHHHHHHHH
Q 020747 301 F-TPWEVGVRGCIESL 315 (322)
Q Consensus 301 ~-~~~~~~l~~~~~~~ 315 (322)
+ ++++++|+++++..
T Consensus 325 ~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 325 GWRSIEESIKDLVGSE 340 (342)
T ss_dssp SCCCHHHHHHHHHCCS
T ss_pred CCcCHHHHHHHHHHhC
Confidence 9 99999999998754
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=7.5e-43 Score=315.49 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=219.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC-------------CCCcCh--hhhhhcc-CCCCcEEEEEccCCCcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD-------------PNSPKT--EHLRELD-GATERLHLFKANLLEEG 71 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-------------~~~~~~--~~~~~~~-~~~~~~~~~~~Dl~~~~ 71 (322)
+|||||||||||||++|+++|+++||+|+++|.- ..+... ..+.... ..+.+++++++|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 4799999999999999999999999999999721 001100 1111110 11356899999999999
Q ss_pred chHHhhC--CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCC--
Q 020747 72 SFDSAVD--GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTP-- 143 (322)
Q Consensus 72 ~~~~~~~--~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~-- 143 (322)
.++++++ ++|+|||+||.... .....+..++++|+.||.+++++|++....+++++.||. ++|+.......
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~-~~~~~~~~~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM-GEYGTPNIDIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG-GGGCCCSSCBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccc-ccccccccccccc
Confidence 9999988 57999999997533 112234567899999999999999998344467777776 66654321000
Q ss_pred CccccCCCCCC-cccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC----------------Cc
Q 020747 144 DVVIDETWFSN-PVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL----------------NF 206 (322)
Q Consensus 144 ~~~~~E~~~~~-~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~----------------~~ 206 (322)
...+.|+.... ...+..+.++|+.||.++|.++..++++++++.+++||+++|||...... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 11122221110 01112333779999999999999999999999999999999999754321 12
Q ss_pred cHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHHhhcCCCCCccE-E--EecCCCCHHHHHHHHHHhCCCCC----
Q 020747 207 GAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIRALEVPKASGRY-L--LAGSVAQHSDILKFLREHYPTLL---- 274 (322)
Q Consensus 207 ~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~~~~~~~~~g~~-~--~~~~~~~~~e~~~~i~~~~~~~~---- 274 (322)
...++.+...|. .+++ +.|+|+|++|++++++.++++....|.+ + .+++.++++|+++++.+..+...
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~ 319 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVK 319 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCC
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCCcc
Confidence 345566666676 3344 8899999999999999999987777644 3 44578999999999988753221
Q ss_pred ---CCCCCccCCCCccccchHHHHhhCCcc-cchhhhHHHHHHHHHHc
Q 020747 275 ---RSGKLEEKYQPTIKVSQERAKSLGINF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 275 ---~~~~~~~~~~~~~~~~~~k~~~lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
.+..........+..|++|+++|||+| ++++++++++++|++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~ 367 (393)
T d1i24a_ 320 KMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQF 367 (393)
T ss_dssp EEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCCCCCCCccEecCCHHHHHHcCCccccCHHHHHHHHHHHHHHH
Confidence 111111344556678899997799999 99999999999998763
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=308.47 Aligned_cols=300 Identities=17% Similarity=0.111 Sum_probs=218.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcC-----hhhhhhcc-CCCCcEEEEEccCCCccchHHhhCC--C
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPK-----TEHLRELD-GATERLHLFKANLLEEGSFDSAVDG--C 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~--~ 80 (322)
|||||||||||||++|+++|+++||+|++++|...... ........ ....++.++++|++|.+.++.++.+ +
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 89999999999999999999999999999986322111 01111111 1145789999999999999988774 5
Q ss_pred CEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCccccc
Q 020747 81 DGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCK 159 (322)
Q Consensus 81 d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~ 159 (322)
++|+|+||.... ....++.+.++.|+.|+.++++++++. ++++||++||+ .+++.... .....+.....+.
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~-~~~~~~~~---~~~~~~~~~~~~~--- 154 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSA-TVYGNPQY---LPLDEAHPTGGCT--- 154 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGGCSCSS---SSBCTTSCCCCCS---
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccc-eeeecccc---ccccccccccccC---
Confidence 689999997543 223345788999999999999999998 89999999999 55555432 2222232223333
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH-cCccEEEEcCCCccCCCCCCCC--------CccHH-HHHHHHcCC-C--C------
Q 020747 160 ENKEWYSLAKTLAEEAAWKFAKE-NGIDLVAIHPGTVIGPFFQPIL--------NFGAE-VILNLINGD-Q--S------ 220 (322)
Q Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~rp~~v~G~~~~~~~--------~~~~~-~~~~~~~g~-~--~------ 220 (322)
++|+.+|..+|+.+..+++. .+++.+++||+++|||...... ..... ++..+.... + +
T Consensus 155 ---~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~ 231 (346)
T d1ek6a_ 155 ---NPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYD 231 (346)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSS
T ss_pred ---ChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCccc
Confidence 67999999999999998876 4999999999999998643211 11222 223233221 1 1
Q ss_pred C--C-CCCcceeHHHHHHHHHHhhcCC---CCCccEEEe-cCCCCHHHHHHHHHHhCCCC-CCCC-CCccCCCCccccch
Q 020747 221 F--A-FPYIFVEIRDVVYAHIRALEVP---KASGRYLLA-GSVAQHSDILKFLREHYPTL-LRSG-KLEEKYQPTIKVSQ 291 (322)
Q Consensus 221 ~--~-~~~~~i~~~D~a~~~~~~~~~~---~~~g~~~~~-~~~~~~~e~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~ 291 (322)
. + +.|+|+|++|+|+++..++... ...++||++ +...++.|+++.|.+.++.. ++.. ...+.+.....+|+
T Consensus 232 ~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~ 311 (346)
T d1ek6a_ 232 TEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANP 311 (346)
T ss_dssp SSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCC
T ss_pred CCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECH
Confidence 1 1 6789999999999999876442 223378766 68899999999999998742 1111 11133455677899
Q ss_pred HHH-HhhCCcc-cchhhhHHHHHHHHHHcC
Q 020747 292 ERA-KSLGINF-TPWEVGVRGCIESLMEKG 319 (322)
Q Consensus 292 ~k~-~~lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
+|+ +.|||+| ++++|+|+++++|+++|+
T Consensus 312 ~k~~~~lgw~p~~slee~I~~~i~w~~~n~ 341 (346)
T d1ek6a_ 312 SLAQEELGWTAALGLDRMCEDLWRWQKQNP 341 (346)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCcCCCHHHHHHHHHHHHHhCH
Confidence 999 7799999 999999999999999875
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-42 Score=301.82 Aligned_cols=283 Identities=16% Similarity=0.165 Sum_probs=212.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih 85 (322)
.|||||||||||||++|+++|+++|+.|++++++. ..|++|.+.++.+++ .+|.|+|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~---------------------~~~~~~~~~~~~~~~~~~~d~v~~ 60 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------ELNLLDSRAVHDFFASERIDQVYL 60 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch---------------------hccccCHHHHHHHHhhcCCCEEEE
Confidence 37999999999999999999999999988765432 158889888888876 5899999
Q ss_pred cccCccc--CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 86 TASPVIF--LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 86 ~A~~~~~--~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
+|+.... ....+....++.|+.||.+++++|++. ++++|||+||. ++|+... ..+++|+.+....+. .+.+
T Consensus 61 ~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~-~vyg~~~----~~~~~E~~~~~~~~~-~~~~ 133 (315)
T d1e6ua_ 61 AAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSS-CIYPKLA----KQPMAESELLQGTLE-PTNE 133 (315)
T ss_dssp CCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCG-GGSCTTC----CSSBCGGGTTSSCCC-GGGH
T ss_pred cchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCc-eEcCCCC----CCCccCCccccCCCC-CCCC
Confidence 9976543 122334567889999999999999998 89999999999 6666554 556777655443211 1126
Q ss_pred hHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc--cHH------HHHHHHcCCC--CCC---CCCcceeH
Q 020747 164 WYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF--GAE------VILNLINGDQ--SFA---FPYIFVEI 230 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~--~~~------~~~~~~~g~~--~~~---~~~~~i~~ 230 (322)
+|+.||.++|++++.+++++|++++++||++||||........ ... .......+.. +.+ +.++|+|+
T Consensus 134 ~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v 213 (315)
T d1e6ua_ 134 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEe
Confidence 7999999999999999999999999999999999976543221 111 1122333332 222 77999999
Q ss_pred HHHHHHHHHhhcCCC---------CCccEEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC--ccCCCCccccchHHHHhhC
Q 020747 231 RDVVYAHIRALEVPK---------ASGRYLL-AGSVAQHSDILKFLREHYPTLLRSGKL--EEKYQPTIKVSQERAKSLG 298 (322)
Q Consensus 231 ~D~a~~~~~~~~~~~---------~~g~~~~-~~~~~~~~e~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~lg 298 (322)
+|+++++..++.+.. ..+.++. ++...+..++++.+.+..+........ .+.......+|++|+++||
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~Lg 293 (315)
T d1e6ua_ 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLG 293 (315)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHHTT
T ss_pred ehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHHcC
Confidence 999999999986532 1234544 477899999999999987643211111 1233445678999997799
Q ss_pred Ccc-cchhhhHHHHHHHHHHc
Q 020747 299 INF-TPWEVGVRGCIESLMEK 318 (322)
Q Consensus 299 ~~~-~~~~~~l~~~~~~~~~~ 318 (322)
|+| ++++|+|+++++||+.|
T Consensus 294 ~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 294 WYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp CCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999 99999999999999976
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.8e-41 Score=305.33 Aligned_cols=304 Identities=18% Similarity=0.134 Sum_probs=221.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHH-CCCeEEEEEeCCCC---cCh-hhhhh-------c-----cCCCCcEEEEEccCCCc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQ-RGYTVKATVRDPNS---PKT-EHLRE-------L-----DGATERLHLFKANLLEE 70 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~---~~~-~~~~~-------~-----~~~~~~~~~~~~Dl~~~ 70 (322)
.|||||||||||||++|+++|++ .||+|+++++-... ... +...+ . ......+.++.+|++|+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 36899999999999999999996 68999999852111 100 00000 0 01134678999999999
Q ss_pred cchHHhhC---CCCEEEEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCC---CC
Q 020747 71 GSFDSAVD---GCDGVFHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPM---TP 143 (322)
Q Consensus 71 ~~~~~~~~---~~d~vih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~---~~ 143 (322)
+.++++++ .+|+|||+|+.... .....+...+++|+.++.++++++++. ++++++++||. .+++..... ..
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~~~~s~-~~~~~~~~~~~~~~ 159 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSA-AIFGNPTMGSVSTN 159 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEG-GGTBSCCC-----C
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCccccccccc-cccccccccccccc
Confidence 99998875 67999999997543 233445678899999999999999998 88999999998 444433211 11
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc--------cHHHHHHHH
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF--------GAEVILNLI 215 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~~~ 215 (322)
..++.|+++..|. ++|+.+|..+|+++..+.+.+|++++++||+++|||.+...... .+..+.++.
T Consensus 160 ~~~~~e~~~~~p~------~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~ 233 (383)
T d1gy8a_ 160 AEPIDINAKKSPE------SPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVM 233 (383)
T ss_dssp CCCBCTTSCCBCS------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHH
T ss_pred ccccccccCCCCC------CHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHH
Confidence 3456677666665 78999999999999999999999999999999999987654321 122222222
Q ss_pred c----C------------C--CCC--------C-CCCcceeHHHHHHHHHHhhcCC---------CCCccEEEe-cCCCC
Q 020747 216 N----G------------D--QSF--------A-FPYIFVEIRDVVYAHIRALEVP---------KASGRYLLA-GSVAQ 258 (322)
Q Consensus 216 ~----g------------~--~~~--------~-~~~~~i~~~D~a~~~~~~~~~~---------~~~g~~~~~-~~~~~ 258 (322)
. + . .++ + +.|+|+|++|+|++++.+++.. ...++||++ +++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s 313 (383)
T d1gy8a_ 234 SDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYS 313 (383)
T ss_dssp HHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEE
T ss_pred hhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCcee
Confidence 1 1 1 011 1 5689999999999999988631 122368775 78999
Q ss_pred HHHHHHHHHHhCCCC-CCCC-CCccCCCCccccchHHH-HhhCCcc-cchhhhHHHH-HHHHHHcC
Q 020747 259 HSDILKFLREHYPTL-LRSG-KLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGC-IESLMEKG 319 (322)
Q Consensus 259 ~~e~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~-~~~~~~~~ 319 (322)
+.|+++.+.+..+.. ++.. .....+.....+|++|+ ++|||+| ++++|+|+++ +.|++.++
T Consensus 314 ~~el~~~i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 314 VREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999987633 1111 11123445677899999 8899999 9999999887 68888764
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=6.3e-41 Score=298.71 Aligned_cols=300 Identities=17% Similarity=0.149 Sum_probs=224.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~v 83 (322)
+++|||||||||||||++|+++|+++||+|++++|+.+.... +.+.......++++.+|++|++.+..+++ .+|+|
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~--~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v 83 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS--LFETARVADGMQSEIGDIRDQNKLLESIREFQPEIV 83 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC--HHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHH--HHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhh
Confidence 578999999999999999999999999999999998765432 11211223568999999999999988887 57999
Q ss_pred EEcccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccc
Q 020747 84 FHTASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK 162 (322)
Q Consensus 84 ih~A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (322)
+|+|+.... .....+...+++|+.|+.++++++++....+.+++.||. .++..... ..+.+|+.+..|.
T Consensus 84 ~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~-~~~~~~~~---~~~~~~~~~~~p~------ 153 (356)
T d1rkxa_ 84 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSD-KCYDNKEW---IWGYRENEAMGGY------ 153 (356)
T ss_dssp EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCG-GGBCCCCS---SSCBCTTSCBCCS------
T ss_pred hhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccc-cccccccc---ccccccccccCCC------
Confidence 999997544 223455789999999999999999997455566666665 44444332 5567777776665
Q ss_pred hhHHHHHHHHHHHHHHHHHH---------cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC-CCC---CCCccee
Q 020747 163 EWYSLAKTLAEEAAWKFAKE---------NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ-SFA---FPYIFVE 229 (322)
Q Consensus 163 ~~Y~~sK~~~e~~~~~~~~~---------~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~-~~~---~~~~~i~ 229 (322)
++|+.+|...|..+..++.+ +++.++++||+++|||.+.......+.++..+..+.+ .+. +.++++|
T Consensus 154 ~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
T d1rkxa_ 154 DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQH 233 (356)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEE
T ss_pred CccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeeccccccccc
Confidence 77999999999999887764 3778999999999999875543444445555554443 222 8899999
Q ss_pred HHHHHHHHHHhhcCCCCCc-----cEEE---ecCCCCHHHHHHHHHHhCCCCC-C--CCCCccCCCCccccchHHH-Hhh
Q 020747 230 IRDVVYAHIRALEVPKASG-----RYLL---AGSVAQHSDILKFLREHYPTLL-R--SGKLEEKYQPTIKVSQERA-KSL 297 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g-----~~~~---~~~~~~~~e~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~k~-~~l 297 (322)
++|+++++..++......+ ..+. .+...+.+++++.+.+..+... + .....+.+...+.+|++|+ +.|
T Consensus 234 v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~L 313 (356)
T d1rkxa_ 234 VLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQL 313 (356)
T ss_dssp THHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHH
T ss_pred cccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHH
Confidence 9999999999987643222 1221 2457899999999999986432 1 1111133455667899999 789
Q ss_pred CCcc-cchhhhHHHHHHHHHH
Q 020747 298 GINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 298 g~~~-~~~~~~l~~~~~~~~~ 317 (322)
||+| ++++++|+++++||++
T Consensus 314 Gw~P~~~l~egi~~ti~wyk~ 334 (356)
T d1rkxa_ 314 GWHPRWNLNTTLEYIVGWHKN 334 (356)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 9999 9999999999999986
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.1e-40 Score=294.64 Aligned_cols=300 Identities=14% Similarity=0.126 Sum_probs=220.4
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCC--CCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDG--CDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~d~vih~A 87 (322)
||||||||||||+||+++|+++||+|+++++-........+..+.. ..+++++.+|++|.+.+.+++++ +|+|||+|
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc-cCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 7999999999999999999999999999886433332233333322 45789999999999999999874 69999999
Q ss_pred cCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCC------------CccccCCCCCC
Q 020747 88 SPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTP------------DVVIDETWFSN 154 (322)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~------------~~~~~E~~~~~ 154 (322)
+.... ....++...+++|+.||.+|++++.+. +++++|+.||..++++....... .....+.++..
T Consensus 81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
T d1orra_ 81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD 159 (338)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccccccccccccccccccccccccccccccCcccCCccc
Confidence 98654 223355789999999999999999998 77777777776577665432100 01111222222
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHc-----CC--CCCC---
Q 020747 155 PVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNF--GAEVILNLIN-----GD--QSFA--- 222 (322)
Q Consensus 155 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~-----g~--~~~~--- 222 (322)
| .+.|+.+|...|.++..+.+.+++...++|++++|++........ ...++..+++ +. .+++
T Consensus 160 ~------~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 233 (338)
T d1orra_ 160 F------HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGK 233 (338)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSC
T ss_pred c------ccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCc
Confidence 2 377999999999999999999999999999999998765443321 2333433332 22 2232
Q ss_pred CCCcceeHHHHHHHHHHhhcCCC-C-CccEEEe---cCCCCHHHHHHHHHHhCCCCC-CCC-CCccCCCCccccchHHH-
Q 020747 223 FPYIFVEIRDVVYAHIRALEVPK-A-SGRYLLA---GSVAQHSDILKFLREHYPTLL-RSG-KLEEKYQPTIKVSQERA- 294 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~~-~-~g~~~~~---~~~~~~~e~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~k~- 294 (322)
+.++|+|++|++++++.++++.. . ++.|++. +..+++.|+++.+.+..+... +.. .....+...+..|++|+
T Consensus 234 ~~r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 313 (338)
T d1orra_ 234 QVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKIT 313 (338)
T ss_dssp CEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHH
T ss_pred eeEeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHHH
Confidence 77999999999999999997742 2 3466653 457899999999999876432 111 11123445677899999
Q ss_pred HhhCCcc-cchhhhHHHHHHHHHH
Q 020747 295 KSLGINF-TPWEVGVRGCIESLME 317 (322)
Q Consensus 295 ~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
+.|||+| ++++|+|+++++|++.
T Consensus 314 ~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 314 NAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHc
Confidence 7899999 9999999999999985
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.3e-37 Score=264.77 Aligned_cols=264 Identities=13% Similarity=0.030 Sum_probs=208.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|||||||||||||++|+++|.++||+|++++|+. +|++|+++++++++ ++|+|||+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~----------------------~D~~d~~~~~~~l~~~~~d~vih~ 59 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------------LDITNVLAVNKFFNEKKPNVVINC 59 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------------CCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh----------------------ccCCCHHHHHHHHHHcCCCEEEee
Confidence 6799999999999999999999999999988753 48889999998887 67999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
|+.... .....+......|+..+.++.+.+... ...+++.||. .+++... ..+.+|+++..+. ..|
T Consensus 60 a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~ss~-~v~~~~~----~~~~~e~~~~~~~------~~~ 126 (281)
T d1vl0a_ 60 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV--GAEIVQISTD-YVFDGEA----KEPITEFDEVNPQ------SAY 126 (281)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH--TCEEEEEEEG-GGSCSCC----SSCBCTTSCCCCC------SHH
T ss_pred ccccccccccccchhhcccccccccccccccccc--cccccccccc-eeeeccc----cccccccccccch------hhh
Confidence 987543 233445678889999999999998886 3577888887 5665554 6778888887776 679
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC-CCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
+.+|..+|.+++ +++.+.+++||+++||++.. ....++..+..+. .+++ +.++++|++|+++++..+++
T Consensus 127 ~~~k~~~e~~~~----~~~~~~~i~R~~~vyG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~ 198 (281)
T d1vl0a_ 127 GKTKLEGENFVK----ALNPKYYIVRTAWLYGDGNN----FVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVID 198 (281)
T ss_dssp HHHHHHHHHHHH----HHCSSEEEEEECSEESSSSC----HHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHH----HhCCCccccceeEEeCCCcc----cccchhhhhccCCceeecCCceeccchhhhhhhhhhhhhh
Confidence 999999998875 45889999999999999743 3344555565665 3445 88999999999999999998
Q ss_pred CCCCCccEEE-ecCCCCHHHHHHHHHHhCCCC----CCCCCCcc---CCCCccccchHHH-HhhCCcccchhhhHHHHHH
Q 020747 243 VPKASGRYLL-AGSVAQHSDILKFLREHYPTL----LRSGKLEE---KYQPTIKVSQERA-KSLGINFTPWEVGVRGCIE 313 (322)
Q Consensus 243 ~~~~~g~~~~-~~~~~~~~e~~~~i~~~~~~~----~~~~~~~~---~~~~~~~~~~~k~-~~lg~~~~~~~~~l~~~~~ 313 (322)
+.. .|.|++ +++.+|+.|+++.+.+.++.. +++..... ....+..+|++|+ +.+||+|++|+++|+++++
T Consensus 199 ~~~-~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~~~~~~l~~~l~ 277 (281)
T d1vl0a_ 199 EKN-YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITREWKESLKEYID 277 (281)
T ss_dssp HTC-CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHH
T ss_pred hcc-cCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 864 467754 578999999999999998742 22221110 0112345799999 8899999999999999999
Q ss_pred HHH
Q 020747 314 SLM 316 (322)
Q Consensus 314 ~~~ 316 (322)
+++
T Consensus 278 ~l~ 280 (281)
T d1vl0a_ 278 LLQ 280 (281)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-36 Score=259.43 Aligned_cols=286 Identities=20% Similarity=0.194 Sum_probs=189.1
Q ss_pred EEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEE-EccCCCccchHHhhCCCCEEEEccc
Q 020747 11 VCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLF-KANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|||||||||||++|+++|+++|+ +|+++++-........+.+.. ..... ..|+.+.......+..+++|+|+|+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa 77 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAIFHEGA 77 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSC----CSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccc----hhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence 89999999999999999999996 688886533221111111110 01111 1111111111122346799999998
Q ss_pred CcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHH
Q 020747 89 PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLA 168 (322)
Q Consensus 89 ~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~s 168 (322)
..... ..+.....+.|+.++.+++++++.. +++ +|+.||..++++.. .....|+.+..|. +.|+.+
T Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~-----~~~~~~~~~~~~~------~~Y~~~ 143 (307)
T d1eq2a_ 78 CSSTT-EWDGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRT-----SDFIESREYEKPL------NVYGYS 143 (307)
T ss_dssp CCCTT-CCCHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCC-----SCBCSSGGGCCCS------SHHHHH
T ss_pred ccccc-ccccccccccccccccccccccccc-ccc-cccccccccccccc-----ccccccccccccc------cccccc
Confidence 65433 3444678888999999999999997 665 66666664555443 3344444444444 679999
Q ss_pred HHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCC--Cc-cHHHHHHHHcCC-CC-C-C---CCCcceeHHHHHHHHHH
Q 020747 169 KTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPIL--NF-GAEVILNLINGD-QS-F-A---FPYIFVEIRDVVYAHIR 239 (322)
Q Consensus 169 K~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~--~~-~~~~~~~~~~g~-~~-~-~---~~~~~i~~~D~a~~~~~ 239 (322)
|..+|.+++.++++++++++++||+++|||...... .. ...+...+..+. .. + + +.++|+|++|+++++..
T Consensus 144 K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred cchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999999765432 12 233445566665 22 2 2 78999999999999999
Q ss_pred hhcCCCCCccEEE-ecCCCCHHHHHHHHHHhCCCCCC-----CCCCccCCCCccccchHHH-HhhCCcc-cchhhhHHHH
Q 020747 240 ALEVPKASGRYLL-AGSVAQHSDILKFLREHYPTLLR-----SGKLEEKYQPTIKVSQERA-KSLGINF-TPWEVGVRGC 311 (322)
Q Consensus 240 ~~~~~~~~g~~~~-~~~~~~~~e~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~k~-~~lg~~~-~~~~~~l~~~ 311 (322)
++.++. .+.|++ +++..+++|+++++.+..+...+ +.............|++|+ +.+||+| ++++|+|+++
T Consensus 224 ~~~~~~-~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~ 302 (307)
T d1eq2a_ 224 FLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEY 302 (307)
T ss_dssp HHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHH
T ss_pred Hhhhcc-ccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHH
Confidence 998764 456755 58999999999999887653222 2222123334445689999 7789999 9999999999
Q ss_pred HHHH
Q 020747 312 IESL 315 (322)
Q Consensus 312 ~~~~ 315 (322)
++|+
T Consensus 303 i~w~ 306 (307)
T d1eq2a_ 303 MAWL 306 (307)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9986
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-33 Score=242.29 Aligned_cols=271 Identities=14% Similarity=0.126 Sum_probs=196.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vih~ 86 (322)
|||||||||||||++|+++|.++|+.| +++++... +.+|++|++.++++++ ++|+|||+
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~------------------~~~Dl~~~~~~~~~i~~~~~D~Vih~ 61 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE------------------FCGDFSNPKGVAETVRKLRPDVIVNA 61 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS------------------SCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc------------------ccCcCCCHHHHHHHHHHcCCCEEEEe
Confidence 479999999999999999999998654 45444321 2479999999999887 56999999
Q ss_pred ccCccc-CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 87 ASPVIF-LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 87 A~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
||.... .....+...++.|+.++.+++++|++. + .+++++||. .+|+... ..+.+|++++.|. +.|
T Consensus 62 Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~-~~~~~~~----~~~~~E~~~~~p~------~~y 128 (298)
T d1n2sa_ 62 AAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTD-YVFPGTG----DIPWQETDATSPL------NVY 128 (298)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEG-GGSCCCT----TCCBCTTSCCCCS------SHH
T ss_pred cccccccccccCccccccccccccccchhhhhcc-c-ccccccccc-ccccCCC----CCCCccccccCCC------chH
Confidence 997643 345566789999999999999999886 5 578888888 4554443 6789999988876 779
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC--CCC-CCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ--SFA-FPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~--~~~-~~~~~i~~~D~a~~~~~~~~ 242 (322)
+.+|..+|..+... .....++|++..++.... .....+...+..+.. ..+ +.++++|++|+++++..++.
T Consensus 129 ~~~k~~~e~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~ 201 (298)
T d1n2sa_ 129 GKTKLAGEKALQDN----CPKHLIFRTSWVYAGKGN---NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIR 201 (298)
T ss_dssp HHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC---CHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHhh----hcccccccccceeeccCC---ccchhhhhhhcccceeecccceeecccccchHHHHHHHHHh
Confidence 99999999988644 345566777766654322 112222333333332 223 77889999999999988764
Q ss_pred ----CCCCCccEEEe-cCCCCHHHHHHHHHHhCCC----CCC------CCCCc-cCC--CCccccchHHH-HhhCCcccc
Q 020747 243 ----VPKASGRYLLA-GSVAQHSDILKFLREHYPT----LLR------SGKLE-EKY--QPTIKVSQERA-KSLGINFTP 303 (322)
Q Consensus 243 ----~~~~~g~~~~~-~~~~~~~e~~~~i~~~~~~----~~~------~~~~~-~~~--~~~~~~~~~k~-~~lg~~~~~ 303 (322)
.+...+.|+++ ++.++..++++.+.+..+. ..+ +.... ... .....+|++|+ +.+||+|++
T Consensus 202 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~~ 281 (298)
T d1n2sa_ 202 VALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQ 281 (298)
T ss_dssp HHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCB
T ss_pred hhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCCc
Confidence 33456688776 5789999999998776421 111 11000 000 12346899999 789999999
Q ss_pred hhhhHHHHHHHHHHc
Q 020747 304 WEVGVRGCIESLMEK 318 (322)
Q Consensus 304 ~~~~l~~~~~~~~~~ 318 (322)
|+++|+++++.+...
T Consensus 282 ~~~gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 282 WELGVKRMLTEMFTT 296 (298)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.7e-31 Score=220.06 Aligned_cols=208 Identities=19% Similarity=0.107 Sum_probs=159.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|++|+|+|||||||||++|+++|+++|+ +|++++|++....... ...+....+|+.+.+++..+++++|+|
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-------~~~i~~~~~D~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-------YKNVNQEVVDFEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-------GGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-------cceeeeeeecccccccccccccccccc
Confidence 4568999999999999999999999994 8999999875543222 245788889999999999999999999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKE 163 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (322)
||+||.... ..+...++++|+.++.+++++|.+. ++++||++||. ..+..+. +
T Consensus 85 i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~fi~~Ss~-~~~~~~~-----------------------~ 137 (232)
T d2bkaa1 85 FCCLGTTRG--KAGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSK-GADKSSN-----------------------F 137 (232)
T ss_dssp EECCCCCHH--HHHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCT-TCCTTCS-----------------------S
T ss_pred ccccccccc--ccchhhhhhhcccccceeeeccccc-CccccccCCcc-ccccCcc-----------------------c
Confidence 999986432 2234578899999999999999998 89999999998 4433321 5
Q ss_pred hHHHHHHHHHHHHHHHHHHcCcc-EEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC-CCCcceeHHHHHHHHHHhh
Q 020747 164 WYSLAKTLAEEAAWKFAKENGID-LVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA-FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~-~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~i~~~D~a~~~~~~~ 241 (322)
.|+.+|..+|+.+. +.+++ ++|+||+.+||+.... +.........+... ..+ .....||++|+|++++.++
T Consensus 138 ~Y~~~K~~~E~~l~----~~~~~~~~IlRP~~i~G~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~I~~~dvA~a~i~~~ 210 (232)
T d2bkaa1 138 LYLQVKGEVEAKVE----ELKFDRYSVFRPGVLLCDRQES--RPGEWLVRKFFGSL-PDSWASGHSVPVVTVVRAMLNNV 210 (232)
T ss_dssp HHHHHHHHHHHHHH----TTCCSEEEEEECCEEECTTGGG--SHHHHHHHHHHCSC-CTTGGGGTEEEHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhccc----cccccceEEecCceeecCCCcC--cHHHHHHHHHhhcc-CCcccCCCeEEHHHHHHHHHHHH
Confidence 69999999999875 44664 8999999999987543 22222233333221 111 4455799999999999999
Q ss_pred cCCCCCccEEEec
Q 020747 242 EVPKASGRYLLAG 254 (322)
Q Consensus 242 ~~~~~~g~~~~~~ 254 (322)
.++..++.+++++
T Consensus 211 ~~~~~~~~~i~~~ 223 (232)
T d2bkaa1 211 VRPRDKQMELLEN 223 (232)
T ss_dssp TSCCCSSEEEEEH
T ss_pred hcCccCCeEEEcH
Confidence 8887777777764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.3e-29 Score=204.60 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=152.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+|||+||||||+||++++++|+++||+|++++|++++... . ...+++++.+|++|+++++++++++|+|||+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~-----~--~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~ 74 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS-----E--GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS-----S--SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccc-----c--cccccccccccccchhhHHHHhcCCCEEEEE
Confidence 45899999999999999999999999999999998754321 1 1245899999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
+|.... ....+++..++.++++++++. +++|||++||.. .+..... . +. ....|.
T Consensus 75 ~g~~~~------~~~~~~~~~~~~~l~~aa~~~-~v~r~i~~ss~~-~~~~~~~----~---------~~----~~~~~~ 129 (205)
T d1hdoa_ 75 LGTRND------LSPTTVMSEGARNIVAAMKAH-GVDKVVACTSAF-LLWDPTK----V---------PP----RLQAVT 129 (205)
T ss_dssp CCCTTC------CSCCCHHHHHHHHHHHHHHHH-TCCEEEEECCGG-GTSCTTC----S---------CG----GGHHHH
T ss_pred eccCCc------hhhhhhhHHHHHHHHHHHHhc-CCCeEEEEeeee-ccCCCcc----c---------cc----cccccc
Confidence 986422 123467889999999999998 999999999984 4333221 0 00 014588
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCCCC
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKA 246 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~ 246 (322)
..|..+|++++ +.+++++++||+.+++......... ...+. ....+++++|+|++++.+++++..
T Consensus 130 ~~~~~~e~~l~----~~~~~~tiirp~~~~~~~~~~~~~~-------~~~~~----~~~~~i~~~DvA~~~~~~l~~~~~ 194 (205)
T d1hdoa_ 130 DDHIRMHKVLR----ESGLKYVAVMPPHIGDQPLTGAYTV-------TLDGR----GPSRVISKHDLGHFMLRCLTTDEY 194 (205)
T ss_dssp HHHHHHHHHHH----HTCSEEEEECCSEEECCCCCSCCEE-------ESSSC----SSCSEEEHHHHHHHHHHTTSCSTT
T ss_pred hHHHHHHHHHH----hcCCceEEEecceecCCCCcccEEE-------eeCCC----CCCCcCCHHHHHHHHHHHhCCCCC
Confidence 99999998775 5699999999999987543221110 01122 567899999999999999998875
Q ss_pred Cc-cEEEe
Q 020747 247 SG-RYLLA 253 (322)
Q Consensus 247 ~g-~~~~~ 253 (322)
.| .+.++
T Consensus 195 ~g~~~~~s 202 (205)
T d1hdoa_ 195 DGHSTYPS 202 (205)
T ss_dssp TTCEEEEE
T ss_pred CCEEEecC
Confidence 56 44544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.3e-27 Score=197.94 Aligned_cols=222 Identities=18% Similarity=0.085 Sum_probs=168.1
Q ss_pred CCCCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---
Q 020747 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--- 78 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--- 78 (322)
|...+++|+++||||++.||++++++|+++|++|++.+|++.+. .++......+..+++|++|+++++++++
T Consensus 1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l-----~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g 75 (244)
T d1pr9a_ 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL-----DSLVRECPGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHSTTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHH-----HHHHHhcCCCeEEEEeCCCHHHHHHHHHHhC
Confidence 45557899999999999999999999999999999999975332 2222112457889999999999998887
Q ss_pred CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||... ..+.+.|+..+++|+.++..+.+++.+. .+..++|++||..+..+.+.
T Consensus 76 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~---------- 145 (244)
T d1pr9a_ 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTN---------- 145 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT----------
T ss_pred CceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccc----------
Confidence 5799999998643 2445678889999999999999887652 24578999999866544332
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.|..+....... .......+.... +...
T Consensus 146 ------------~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~----pl~R 208 (244)
T d1pr9a_ 146 ------------HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS-DPHKAKTMLNRI----PLGK 208 (244)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC-SHHHHHHHHTTC----TTCS
T ss_pred ------------hhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc-ChHHHHHHHhcC----CCCC
Confidence 1569999999999999999874 8999999999998875432221 122333344433 4556
Q ss_pred ceeHHHHHHHHHHhhcC--CCCCccEEEecC
Q 020747 227 FVEIRDVVYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
+..++|+|+++.+++.+ ...+|..+..++
T Consensus 209 ~~~peevA~~v~fL~S~~a~~itG~~i~vDG 239 (244)
T d1pr9a_ 209 FAEVEHVVNAILFLLSDRSGMTTGSTLPVEG 239 (244)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CcCHHHHHHHHHHHhCchhCCcCCcEEEECc
Confidence 78899999999999864 346776654443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.95 E-value=1.2e-27 Score=202.52 Aligned_cols=227 Identities=17% Similarity=0.089 Sum_probs=168.6
Q ss_pred CCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 4 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
..+++|+++||||++.||++++++|+++|++|++.+|+..+......+++...+.++..+++|++|+++++++++
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976433223334444445678999999999998887765
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---C-ccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---S-IKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~-~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... .+.+.|++.+++|+.++.++.+++.+.+ + ..+||++||..+..+.+..
T Consensus 83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~------- 155 (261)
T d1geea_ 83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLF------- 155 (261)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTC-------
T ss_pred hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccc-------
Confidence 68999999996432 3455688999999999999998876542 3 3468999998665443321
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|.++...... ........+.... +.
T Consensus 156 ---------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~~~----pl 215 (261)
T d1geea_ 156 ---------------VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-ADPEQRADVESMI----PM 215 (261)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH-HSHHHHHHHHTTC----TT
T ss_pred ---------------cccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhc-CCHHHHHHHHhcC----CC
Confidence 569999999999999999875 899999999999887532110 0112222233222 44
Q ss_pred CcceeHHHHHHHHHHhhcC--CCCCccEEEecCCC
Q 020747 225 YIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVA 257 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 257 (322)
..+..++|+|+++++++.. ...+|..+..++..
T Consensus 216 ~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (261)
T d1geea_ 216 GYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 5677899999999999964 34677665444433
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.95 E-value=2.2e-27 Score=199.86 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=167.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..... +...++...+.++..+++|++|+++++++++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~-~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD-SVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH-HHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999998754332 2333444445679999999999999887766
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.|++.+++|+.++..+.+++.+.+ +.++||++||..+..+.+..
T Consensus 87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~---------- 156 (251)
T d2c07a1 87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQ---------- 156 (251)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC----------
T ss_pred CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCC----------
Confidence 67999999986432 3345688999999999999999876542 45799999999777654431
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+.+.++.+. |++++.|.||.|.++..... .......+.... +...+
T Consensus 157 ------------~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~---~~~~~~~~~~~~----pl~R~ 217 (251)
T d2c07a1 157 ------------ANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI---SEQIKKNIISNI----PAGRM 217 (251)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C---CHHHHHHHHTTC----TTSSC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc---CHHHHHHHHhcC----CCCCC
Confidence 569999999999999999874 89999999999988764432 223333444433 45567
Q ss_pred eeHHHHHHHHHHhhcC--CCCCccEEEecCCC
Q 020747 228 VEIRDVVYAHIRALEV--PKASGRYLLAGSVA 257 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 257 (322)
..++|+|+++++++.. ...+|..+..++.+
T Consensus 218 ~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 218 GTPEEVANLACFLSSDKSGYINGRVFVIDGGL 249 (251)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCchhCCCcCcEEEECCCc
Confidence 8899999999999864 34677665544434
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=4.8e-29 Score=216.82 Aligned_cols=230 Identities=13% Similarity=0.168 Sum_probs=164.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+||||||||||||++|+++|+++||+|++++|+............. ....+++++++|++|.+.+.+++.+++.++|+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 46899999999999999999999999999999987655432222211 11356899999999999999999999999999
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
++.... ..|..++.++++++.+. +..++++.||. +.++.. +..+..+. ..|.
T Consensus 83 ~~~~~~----------~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~-g~~~~~----------~~~~~~~~------~~~~ 134 (312)
T d1qyda_ 83 LAGGVL----------SHHILEQLKLVEAIKEA-GNIKRFLPSEF-GMDPDI----------MEHALQPG------SITF 134 (312)
T ss_dssp CCCSSS----------STTTTTHHHHHHHHHHS-CCCSEEECSCC-SSCTTS----------CCCCCSST------THHH
T ss_pred hhhccc----------ccchhhhhHHHHHHHHh-cCCcEEEEeec-cccCCC----------cccccchh------hhhh
Confidence 875321 23555677889999887 66677888876 332221 11111221 4477
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHHhh
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIRAL 241 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~~~ 241 (322)
.+|..+++.. .+.+++++++||+.+||+......... ......+. .+++ +.++|+|++|+|++++.++
T Consensus 135 ~~~~~~~~~~----~~~~~~~~i~r~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l 207 (312)
T d1qyda_ 135 IDKRKVRRAI----EAASIPYTYVSSNMFAGYFAGSLAQLD---GHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI 207 (312)
T ss_dssp HHHHHHHHHH----HHTTCCBCEEECCEEHHHHTTTSSCTT---CCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHhh----cccccceEEeccceeecCCccchhhHH---HHhhhcccccccccccccccceeeHHHHHHHHHHHh
Confidence 7777776654 467999999999999997644322110 00111222 2333 7899999999999999999
Q ss_pred cCCCCCc--cEEEe-cCCCCHHHHHHHHHHhCCC
Q 020747 242 EVPKASG--RYLLA-GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 242 ~~~~~~g--~~~~~-~~~~~~~e~~~~i~~~~~~ 272 (322)
.++...+ .|+++ ++.+|++|+++.+++..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 241 (312)
T d1qyda_ 208 DDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ 241 (312)
T ss_dssp TCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred cCccccCceEEEeCCCcCCCHHHHHHHHHHHHCC
Confidence 8876544 35555 4679999999999998753
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=5.5e-27 Score=195.49 Aligned_cols=210 Identities=13% Similarity=0.133 Sum_probs=158.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++++|+++||||++.||++++++|+++|++|++.+|+.... .++..+++|++|+++++++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 71 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP------------KGLFGVEVDVTDSDAVDRAFTAVEEHQ 71 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------------TTSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh------------cCceEEEEecCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999986543 246778999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... .+.+.|++.+++|+.++..+.+++.+. .+.++||++||..+..+.+..
T Consensus 72 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~--------- 142 (237)
T d1uzma1 72 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQ--------- 142 (237)
T ss_dssp SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CC---------
T ss_pred CCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCccc---------
Confidence 57999999996432 345567889999999999998876543 255699999998666544321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|.++..... ............ +...
T Consensus 143 -------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~---~~~~~~~~~~~~----pl~R 202 (237)
T d1uzma1 143 -------------ANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL---DERIQQGALQFI----PAKR 202 (237)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS---CHHHHHHHGGGC----TTCS
T ss_pred -------------HHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhcc---CHHHHHHHHhcC----CCCC
Confidence 569999999999999999874 89999999999988753221 111222222222 4556
Q ss_pred ceeHHHHHHHHHHhhcC--CCCCccEEEecC
Q 020747 227 FVEIRDVVYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
+..++|+|+++.+++.. ...+|..+..++
T Consensus 203 ~~~pedvA~~v~fL~S~~s~~itG~~i~vdG 233 (237)
T d1uzma1 203 VGTPAEVAGVVSFLASEDASYISGAVIPVDG 233 (237)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence 78899999999999864 346776544433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.95 E-value=2e-27 Score=201.38 Aligned_cols=231 Identities=15% Similarity=0.067 Sum_probs=163.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..+...+...++. ..+.++.++++|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999875332222222221 124578999999999999888776
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... .+.+.|.+.+++|+.++.++++++.+.+ +..+||++||..+..+.+..
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~--------- 152 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANK--------- 152 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC---------
T ss_pred CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCc---------
Confidence 58999999996422 4556788999999999999988876542 44699999999776654431
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHH--HHHHHHcCCCCCC--
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAE--VILNLINGDQSFA-- 222 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~--~~~~~~~g~~~~~-- 222 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|-++........... ...........+.
T Consensus 153 -------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 153 -------------SAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHH
T ss_pred -------------chhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhc
Confidence 569999999999999999874 89999999999988764322111000 0000000000010
Q ss_pred -CCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 223 -FPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 223 -~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
+...+..++|+|+++++++.. ...+|..+..++.+|
T Consensus 220 ~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~t 258 (260)
T d1x1ta1 220 QPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp CTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcchh
Confidence 456688999999999999964 346786655544444
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.94 E-value=1.5e-26 Score=194.16 Aligned_cols=218 Identities=14% Similarity=0.090 Sum_probs=157.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||+++++.|+++|++|++.+|++.+..... ....+.++..+++|++|+++++++++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~---~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G 79 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAA---IRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFG 79 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHH---HHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHH---HHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999764322222 22235678999999999999887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.|++.+++|+.++.++.+++.+.+ +.+++|++||..+..+.+..
T Consensus 80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~---------- 149 (247)
T d2ew8a1 80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAY---------- 149 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSC----------
T ss_pred CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCccc----------
Confidence 68999999996432 3456788999999999999999876542 44789999998665544321
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+.+.++.+. |++++.|.||.|.++........ . ........ ..+...+
T Consensus 150 ------------~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~--~-~~~~~~~~--~~~l~r~ 212 (247)
T d2ew8a1 150 ------------THYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALS--A-MFDVLPNM--LQAIPRL 212 (247)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------CT--TSSSCSC
T ss_pred ------------ccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccc--h-hHHHHHHH--hccCCCC
Confidence 569999999999999999874 89999999999988764322110 0 01111110 0033456
Q ss_pred eeHHHHHHHHHHhhcC--CCCCccEEEe
Q 020747 228 VEIRDVVYAHIRALEV--PKASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~--~~~~g~~~~~ 253 (322)
..++|+|+++++++.. ...+|..+..
T Consensus 213 ~~pedvA~~v~fL~S~~s~~itG~~i~v 240 (247)
T d2ew8a1 213 QVPLDLTGAAAFLASDDASFITGQTLAV 240 (247)
T ss_dssp CCTHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred CCHHHHHHHHHHHhCchhcCCcCCeEEE
Confidence 7899999999999864 3457765444
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=9.5e-27 Score=194.78 Aligned_cols=217 Identities=20% Similarity=0.116 Sum_probs=162.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 82 (322)
+++|+++||||++.||++++++|+++|++|++.+|++++. .++.....++..+.+|++|+++++++++ ++|+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l-----~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDL-----VSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-----HHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 7889999999999999999999999999999999976332 2221112457889999999999999888 5799
Q ss_pred EEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 83 VFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 83 vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+||+||.... ...+.++..+++|+.++..+.+++.+. .+..++|++||..+..+.+.
T Consensus 78 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~-------------- 143 (242)
T d1cyda_ 78 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPN-------------- 143 (242)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTT--------------
T ss_pred EEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCc--------------
Confidence 9999996432 345567889999999999999876542 23468999999855543332
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.+.++...... ........+.... +...+..+
T Consensus 144 --------~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~----pl~R~~~p 210 (242)
T d1cyda_ 144 --------LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS-ADPEFARKLKERH----PLRKFAEV 210 (242)
T ss_dssp --------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT-CCHHHHHHHHHHS----TTSSCBCH
T ss_pred --------cccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhc-CCHHHHHHHHhcC----CCCCCcCH
Confidence 1569999999999999999874 899999999999876432111 1122233333222 55667889
Q ss_pred HHHHHHHHHhhcC--CCCCccEEEec
Q 020747 231 RDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 231 ~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
+|+|+++++++.. ...+|..+..+
T Consensus 211 eeva~~v~fL~S~~s~~itG~~i~vD 236 (242)
T d1cyda_ 211 EDVVNSILFLLSDRSASTSGGGILVD 236 (242)
T ss_dssp HHHHHHHHHHHSGGGTTCCSSEEEES
T ss_pred HHHHHHHHHHhCchhcCcCCceEEeC
Confidence 9999999999864 34577554443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.2e-26 Score=194.91 Aligned_cols=219 Identities=17% Similarity=0.150 Sum_probs=164.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||+++++.|+++|++|++.+|++.. ++++.....+...+++|++|+++++++++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~-----~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG-----GRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH-----HHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999999999987532 22222223467899999999999887766
Q ss_pred CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.|++.+++|+.++.++++++.+.+ +.+++|++||..+..+.+..
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~~~---------- 148 (250)
T d1ydea1 79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQA---------- 148 (250)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTC----------
T ss_pred CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccccCc----------
Confidence 58999999995321 2344578999999999999999887652 23699999999776554431
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCC---CCCccHHHHHHHHcCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQP---ILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~---~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.+|.+.+.+.+.++.++ |++++.|.||.|.++.... ........+.+..... +.
T Consensus 149 ------------~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~----pl 212 (250)
T d1ydea1 149 ------------VPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ----PL 212 (250)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS----TT
T ss_pred ------------chhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcC----CC
Confidence 569999999999999999875 8999999999998764211 1111122333333333 55
Q ss_pred CcceeHHHHHHHHHHhhcC-CCCCccEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEV-PKASGRYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~-~~~~g~~~~~~~ 255 (322)
..+..++|+|+++++++.. ...+|..+..++
T Consensus 213 ~R~g~p~eva~~v~fL~Sda~~itG~~i~vDG 244 (250)
T d1ydea1 213 GRMGQPAEVGAAAVFLASEANFCTGIELLVTG 244 (250)
T ss_dssp SSCBCHHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred CCCCCHHHHHHHHHHHhCccCCCcCCeEEECC
Confidence 6788999999999998853 345775544433
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=8.8e-27 Score=196.03 Aligned_cols=224 Identities=15% Similarity=0.093 Sum_probs=166.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+.++.. +...++. ..+.++..+++|++|+++++++++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~-~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS-EAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999764432 2222221 124578899999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhc-cCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAML-LNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~-~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.|++.+++|+.++.++.+++.+.+ +.+++|++||..+.. +.+.
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~--------- 152 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPN--------- 152 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSS---------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCcc---------
Confidence 58999999996422 3455778899999999999999977653 446999999964432 2211
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.|-++....... .......+.... +..
T Consensus 153 -------------~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~----pl~ 214 (251)
T d1vl8a_ 153 -------------ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS-DPEKLDYMLKRI----PLG 214 (251)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT-CHHHHHHHHHTC----TTS
T ss_pred -------------ccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC-CHHHHHHHHhcC----CCC
Confidence 1569999999999999999874 8999999999998876432111 122333344333 455
Q ss_pred cceeHHHHHHHHHHhhcC--CCCCccEEEecCCC
Q 020747 226 IFVEIRDVVYAHIRALEV--PKASGRYLLAGSVA 257 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 257 (322)
.+..++|+|+++++++.. ...+|..+..++.+
T Consensus 215 R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 677899999999999864 34677665444433
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.94 E-value=3.1e-28 Score=210.63 Aligned_cols=224 Identities=16% Similarity=0.248 Sum_probs=159.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-hhhhhcc-CCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-EHLRELD-GATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.|||||||||||||++++++|+++||+|++++|+...... .....+. .....++++.+|+.+...+.+.+++++.|||
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 4789999999999999999999999999999998665433 1111111 1134688999999999999999999999999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
+++.. +..++.++++++... +++++++.||. ....... ....+. ..+
T Consensus 83 ~~~~~--------------~~~~~~~~~~a~~~~-~~~~~~~~s~~-~~~~~~~-----------~~~~~~------~~~ 129 (307)
T d1qyca_ 83 TVGSL--------------QIESQVNIIKAIKEV-GTVKRFFPSEF-GNDVDNV-----------HAVEPA------KSV 129 (307)
T ss_dssp CCCGG--------------GSGGGHHHHHHHHHH-CCCSEEECSCC-SSCTTSC-----------CCCTTH------HHH
T ss_pred ccccc--------------ccchhhHHHHHHHHh-ccccceeeecc-ccccccc-----------cccccc------ccc
Confidence 98642 233455788888887 77888888886 3322111 111111 335
Q ss_pred HHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC---CCCcceeHHHHHHHHHHh
Q 020747 166 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA---FPYIFVEIRDVVYAHIRA 240 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~~~i~~~D~a~~~~~~ 240 (322)
...+...+..+ .+.+++++++||+++||+....... .......+. .+++ +.++|+|++|+|++++.+
T Consensus 130 ~~~~~~~~~~~----~~~~~~~~i~r~~~v~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 201 (307)
T d1qyca_ 130 FEVKAKVRRAI----EAEGIPYTYVSSNCFAGYFLRSLAQ----AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKA 201 (307)
T ss_dssp HHHHHHHHHHH----HHHTCCBEEEECCEEHHHHTTTTTC----TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTT
T ss_pred ccccccccchh----hccCCCceecccceecCCCccchhh----hhhhhhhcccceeeecccccccCCcHHHHHHHHHHH
Confidence 66666666554 4569999999999999986543211 112222233 2222 889999999999999999
Q ss_pred hcCCCCCc--cEEEe-cCCCCHHHHHHHHHHhCCC
Q 020747 241 LEVPKASG--RYLLA-GSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 241 ~~~~~~~g--~~~~~-~~~~~~~e~~~~i~~~~~~ 272 (322)
++++...+ .|+++ ++.+|+.|+++.+.+..|.
T Consensus 202 l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~ 236 (307)
T d1qyca_ 202 VDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 236 (307)
T ss_dssp SSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred hcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCC
Confidence 99875444 45554 6889999999999999874
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.94 E-value=1.3e-26 Score=195.79 Aligned_cols=226 Identities=17% Similarity=0.110 Sum_probs=166.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|++.+.. +..+++.....++..+.+|++++++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~-~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD-ECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999864332 3334444445678899999999998876654
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||.... ...+.|.+.+++|+.++..+.+++.+. .+..++|++||..+..+.+..
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~--------- 153 (258)
T d1ae1a_ 83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSV--------- 153 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTC---------
T ss_pred CCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccc---------
Confidence 37999999996433 345568899999999999999887643 245799999999665444321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC---ccHHHHHHHHcCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN---FGAEVILNLINGDQSFAF 223 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~---~~~~~~~~~~~g~~~~~~ 223 (322)
..|+.+|.+.+.+.+.++.++ |+++++|.||.+.++....... .....+..+.... +
T Consensus 154 -------------~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~----p 216 (258)
T d1ae1a_ 154 -------------SLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT----P 216 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS----T
T ss_pred -------------hhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcC----C
Confidence 569999999999999999884 8999999999999876433221 1223333333322 5
Q ss_pred CCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
...+..++|+|.++.+++.+ ...+|..+..++.+|
T Consensus 217 lgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 253 (258)
T d1ae1a_ 217 MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 253 (258)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCee
Confidence 56688999999999999954 446787665554443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=3.7e-26 Score=191.15 Aligned_cols=217 Identities=18% Similarity=0.150 Sum_probs=162.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..+. ++... .-+...+++|++|+++++++++
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l-----~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPL-----REAAE-AVGAHPVVMDVADPASVERGFAEALAHLG 76 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-----HHHHH-TTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-----HHHHH-HcCCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999999975332 22111 1246789999999999887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.|++.+++|+.++.++.+++.+.+ +...++++||. ...+.+.
T Consensus 77 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~~~----------- 144 (242)
T d1ulsa_ 77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGNLG----------- 144 (242)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCCTT-----------
T ss_pred CceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCCCC-----------
Confidence 58999999996432 4455688999999999999999887642 34567777775 4433322
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.|-.+..... ......+..... +...+
T Consensus 145 -----------~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~---~~~~~~~~~~~~----pl~R~ 206 (242)
T d1ulsa_ 145 -----------QANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV---PEKVREKAIAAT----PLGRA 206 (242)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS---CHHHHHHHHHTC----TTCSC
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC---CHHHHHHHHhcC----CCCCC
Confidence 1569999999999999999875 89999999999998865432 122233333333 45567
Q ss_pred eeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 228 VEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
..++|+|+++++++.. ...+|..+..++..+
T Consensus 207 ~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 207 GKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 7899999999999964 346786655544443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=7e-27 Score=197.09 Aligned_cols=222 Identities=14% Similarity=0.124 Sum_probs=167.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..+.. +...++...+.++..+++|++|+++++++++
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999998764322 2333344345678999999999998887665
Q ss_pred CCCEEEEcccCccc----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 GCDGVFHTASPVIF----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 ~~d~vih~A~~~~~----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|++||+||.... .+.+.|++.+++|+.++.++.+++.+.+ +..++|++||..+..+.+..
T Consensus 88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~----------- 156 (255)
T d1fmca_ 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINM----------- 156 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTC-----------
T ss_pred CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcccccc-----------
Confidence 68999999996432 2345678899999999999998876542 34589999998665544321
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcce
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFV 228 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 228 (322)
..|+.||.+.+.+.+.++.+. |++++.|.||.|.++....... ......+.... +...+.
T Consensus 157 -----------~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~e~~~~~~~~~----pl~R~g 219 (255)
T d1fmca_ 157 -----------TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVIT--PEIEQKMLQHT----PIRRLG 219 (255)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCC--HHHHHHHHHTC----SSCSCB
T ss_pred -----------ccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCC--HHHHHHHHhcC----CCCCCc
Confidence 569999999999999999874 8999999999998875432221 22333334333 445677
Q ss_pred eHHHHHHHHHHhhcC--CCCCccE-EEecCC
Q 020747 229 EIRDVVYAHIRALEV--PKASGRY-LLAGSV 256 (322)
Q Consensus 229 ~~~D~a~~~~~~~~~--~~~~g~~-~~~~~~ 256 (322)
.++|+|+++++++.. ...+|.. .+.|+.
T Consensus 220 ~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 220 QPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 899999999999964 3467755 455554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.4e-26 Score=193.83 Aligned_cols=215 Identities=17% Similarity=0.153 Sum_probs=164.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+++... +...++ ..+...+++|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQ-AISDYL---GANGKGLMLNVTDPASIESVLEKIRAEFG 77 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHh---CCCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence 67899999999999999999999999999999998753321 122222 3467889999999998887766
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... ...+.|++.+++|+.++..+++++.+.+ +.++||++||..+..+.+..
T Consensus 78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~---------- 147 (243)
T d1q7ba_ 78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQ---------- 147 (243)
T ss_dssp SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC----------
T ss_pred CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCC----------
Confidence 58999999986432 4456788999999999999999986542 44789999999776654431
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.+-++..... .......+.... +...+
T Consensus 148 ------------~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~~~----pl~R~ 208 (243)
T d1q7ba_ 148 ------------ANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL---SDDQRAGILAQV----PAGRL 208 (243)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS---CHHHHHHHHTTC----TTSSC
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhh---hhhHHHHHHhcC----CCCCC
Confidence 569999999999999999874 89999999999987653322 122223333332 45567
Q ss_pred eeHHHHHHHHHHhhcCC--CCCccEEEe
Q 020747 228 VEIRDVVYAHIRALEVP--KASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~~--~~~g~~~~~ 253 (322)
..++|+|+++.+++... ..+|..+..
T Consensus 209 ~~pedvA~~v~fL~S~~s~~itGq~i~v 236 (243)
T d1q7ba_ 209 GGAQEIANAVAFLASDEAAYITGETLHV 236 (243)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred CCHHHHHHHHHHHhCchhcCCcCCeEEE
Confidence 88999999999999643 457755444
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.94 E-value=1.2e-26 Score=196.28 Aligned_cols=223 Identities=15% Similarity=0.084 Sum_probs=167.3
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..+.. +...++...+.++..+++|++|+++++++++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELN-DCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999754432 3334444445678899999999998876654
Q ss_pred -CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||... +.+.+.+++.+++|+.++.++.+++.+. .+.++||++||..+..+.+..
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~--------- 155 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYE--------- 155 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTC---------
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccc---------
Confidence 3799999999643 2345567889999999999999987654 245699999998665443321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHcCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--GAEVILNLINGDQSFAFP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.+|.+.+.+.+.++.++ |++++.|.||.|.++........ ....+.++.... +.
T Consensus 156 -------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~----pl 218 (259)
T d2ae2a_ 156 -------------AVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC----AL 218 (259)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS----TT
T ss_pred -------------cchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcC----CC
Confidence 569999999999999999874 89999999999987753211111 122333344333 45
Q ss_pred CcceeHHHHHHHHHHhhcC--CCCCccEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
..+..++|+|+++++++.. ...+|..+..++
T Consensus 219 ~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 251 (259)
T d2ae2a_ 219 RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDG 251 (259)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECC
Confidence 6678899999999999964 345776654433
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.3e-27 Score=196.73 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=134.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH-hhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS-AVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~vih 85 (322)
|+|||||||||||++|+++|+++|+ +|+++.|++... ..++.. +..|..++.. +...+|+|||
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-----------~~~~~~---~~~d~~~~~~~~~~~~d~vi~ 68 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-----------HPRLDN---PVGPLAELLPQLDGSIDTAFC 68 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-----------CTTEEC---CBSCHHHHGGGCCSCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-----------cccccc---cccchhhhhhccccchheeee
Confidence 8999999999999999999999997 566666654321 123333 3333333333 3346899999
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhH
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWY 165 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y 165 (322)
++|..... ......+.+.|+.++.+++++|++. +++++|++||. ..++... +.|
T Consensus 69 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~~i~~Ss~-~~~~~~~-----------------------~~y 122 (212)
T d2a35a1 69 CLGTTIKE-AGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSAL-GADAKSS-----------------------IFY 122 (212)
T ss_dssp CCCCCHHH-HSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCT-TCCTTCS-----------------------SHH
T ss_pred eeeeeccc-cccccccccchhhhhhhcccccccc-ccccccccccc-ccccccc-----------------------cch
Confidence 99865332 1223578999999999999999997 99999999998 4443322 559
Q ss_pred HHHHHHHHHHHHHHHHHcCc-cEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCCCCCcceeHHHHHHHHHHhhc
Q 020747 166 SLAKTLAEEAAWKFAKENGI-DLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFAFPYIFVEIRDVVYAHIRALE 242 (322)
Q Consensus 166 ~~sK~~~e~~~~~~~~~~~~-~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~i~~~D~a~~~~~~~~ 242 (322)
+.+|..+|+.++ +.++ +++++||+.|||+....... ..+... +.++..+++||++|+|++++.+++
T Consensus 123 ~~~K~~~E~~l~----~~~~~~~~I~Rp~~v~G~~~~~~~~-------~~~~~~~~~~~~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 123 NRVKGELEQALQ----EQGWPQLTIARPSLLFGPREEFRLA-------EILAAPIARILPGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHHHHHHT----TSCCSEEEEEECCSEESTTSCEEGG-------GGTTCCCC----CHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhhhcc----ccccccceeeCCcceeCCcccccHH-------HHHHHHHhhccCCCCcEEEHHHHHHHHHHHHc
Confidence 999999999875 4466 59999999999997543211 111111 111244567999999999999998
Q ss_pred CCCCCccEE
Q 020747 243 VPKASGRYL 251 (322)
Q Consensus 243 ~~~~~g~~~ 251 (322)
++..+..|+
T Consensus 192 ~~~~g~~~~ 200 (212)
T d2a35a1 192 EEGKGVRFV 200 (212)
T ss_dssp CCCSEEEEE
T ss_pred CCCCCCEEE
Confidence 865433333
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.94 E-value=1.5e-26 Score=195.34 Aligned_cols=224 Identities=17% Similarity=0.130 Sum_probs=165.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc--cCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL--DGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|+++||||++.||+++++.|+++|++|++.+|+...... ...++ ...+.++..+++|++|+++++++++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA-SKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999997643321 11111 1224578899999999999887765
Q ss_pred --CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||... +.+.+.|++.+++|+.++.++.+++.+. .+.++||++||..+..+.+.
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~-------- 152 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGN-------- 152 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSS--------
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCC--------
Confidence 5899999999532 1345568899999999999999987553 24578999999876654432
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC-----CCccHHHHHHHHcCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI-----LNFGAEVILNLINGDQ 219 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~-----~~~~~~~~~~~~~g~~ 219 (322)
...|+.||.+.+.+.+.++.+. |++++.|.||.|.+|..... ..........+....
T Consensus 153 --------------~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (258)
T d1iy8a_ 153 --------------QSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN- 217 (258)
T ss_dssp --------------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcC-
Confidence 1569999999999999999875 89999999999987642110 001112223333332
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCC
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSV 256 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~ 256 (322)
+...+..++|+|+++++++.. ...+|..+..++.
T Consensus 218 ---pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG 253 (258)
T d1iy8a_ 218 ---PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGG 253 (258)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcc
Confidence 456678999999999999964 3467766544433
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.94 E-value=7.5e-27 Score=195.63 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=166.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
+.|+||||++.||++++++|+++|++|++.+++..+......+++...+.++..+++|++|+++++++++ ++|
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999998877654332222223333335678899999999999887765 579
Q ss_pred EEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 82 GVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 82 ~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
++||+||.... .+.+.|++.+++|+.++.++.+++.+.+ +.++||++||..+..+.+..
T Consensus 82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~------------- 148 (244)
T d1edoa_ 82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ------------- 148 (244)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTC-------------
T ss_pred ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCC-------------
Confidence 99999996432 4556788999999999999999886642 45799999998777655431
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEI 230 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~ 230 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.+-++..... .......+.... +...+..+
T Consensus 149 ---------~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~~~~~~----pl~R~~~p 212 (244)
T d1edoa_ 149 ---------ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL---GEDMEKKILGTI----PLGRTGQP 212 (244)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CHHHHHHHHTSC----TTCSCBCH
T ss_pred ---------HHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHh---hHHHHHHHHhcC----CCCCCcCH
Confidence 569999999999999999885 99999999999987753321 122333333333 45567889
Q ss_pred HHHHHHHHHhhcCC---CCCccEEEecCCCC
Q 020747 231 RDVVYAHIRALEVP---KASGRYLLAGSVAQ 258 (322)
Q Consensus 231 ~D~a~~~~~~~~~~---~~~g~~~~~~~~~~ 258 (322)
+|+|+++.+++..+ ..+|..+..++.+|
T Consensus 213 ~dvA~~v~fLa~S~~a~~itG~~i~vdGG~s 243 (244)
T d1edoa_ 213 ENVAGLVEFLALSPAASYITGQAFTIDGGIA 243 (244)
T ss_dssp HHHHHHHHHHHHCSGGGGCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHCCchhcCCcCCeEEeCCCee
Confidence 99999999986333 35776655544443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=3.5e-26 Score=191.87 Aligned_cols=218 Identities=13% Similarity=0.070 Sum_probs=160.7
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||++.||++++++|+++|++|++.+|++... +..++. +...+++|++|+++++++++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~--~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGK--EVAEAI-----GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHH--HHHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999976432 222222 24678999999998887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.|++.+++|+.++.++.+++.+.+ +..+||++||..+..+.+..
T Consensus 75 G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~--------- 145 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQEN--------- 145 (248)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTB---------
T ss_pred CCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccccccccc---------
Confidence 58999999996432 3345678899999999999999987642 45699999999766554321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--ccH-HHHHHHHcCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--FGA-EVILNLINGDQSFAF 223 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--~~~-~~~~~~~~g~~~~~~ 223 (322)
..|+.+|.+.+.+.+.++.++ |++++.|.||.|-++....... ... .....+.... +
T Consensus 146 -------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----p 208 (248)
T d2d1ya1 146 -------------AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLH----A 208 (248)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTS----T
T ss_pred -------------chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcC----C
Confidence 569999999999999999884 8999999999998764211000 000 1111122211 4
Q ss_pred CCcceeHHHHHHHHHHhhcC--CCCCccEEEecC
Q 020747 224 PYIFVEIRDVVYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
...+..++|+|+++.+++.. ...+|..+..++
T Consensus 209 l~R~~~pedia~~v~fL~S~~s~~itG~~i~vDG 242 (248)
T d2d1ya1 209 LRRLGKPEEVAEAVLFLASEKASFITGAILPVDG 242 (248)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCc
Confidence 55678899999999999864 346786544433
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.94 E-value=4e-26 Score=193.14 Aligned_cols=219 Identities=18% Similarity=0.109 Sum_probs=165.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||+++++.|+++|++|++.+|+..... +...++...+.++..+++|++|+++++++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE-KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999754322 2333444446688999999999998887765
Q ss_pred CCCEEEEcccCcc------cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVI------FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||... +.+.+.|++.+++|+.++.++.+++.+.+ +..++|++||..+..+.+..
T Consensus 82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~--------- 152 (260)
T d1zema1 82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNM--------- 152 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTB---------
T ss_pred CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcch---------
Confidence 5899999998532 13455688999999999999999876542 45799999999777654431
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCC-------------CCCCccHHHHHH
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQ-------------PILNFGAEVILN 213 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~-------------~~~~~~~~~~~~ 213 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|-++... ............
T Consensus 153 -------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1zema1 153 -------------AAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQ 219 (260)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHH
Confidence 569999999999999999885 899999999999886421 001111122223
Q ss_pred HHcCCCCCCCCCcceeHHHHHHHHHHhhcC--CCCCccEE
Q 020747 214 LINGDQSFAFPYIFVEIRDVVYAHIRALEV--PKASGRYL 251 (322)
Q Consensus 214 ~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~ 251 (322)
+.... +...+..++|+|+++++++.. ...+|..+
T Consensus 220 ~~~~~----Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i 255 (260)
T d1zema1 220 MIGSV----PMRRYGDINEIPGVVAFLLGDDSSFMTGVNL 255 (260)
T ss_dssp HHHTS----TTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE
T ss_pred HHhcC----CCCCCcCHHHHHHHHHHHhCchhcCccCCeE
Confidence 33333 456678899999999999964 34567543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=6e-27 Score=196.29 Aligned_cols=224 Identities=19% Similarity=0.173 Sum_probs=158.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCe--EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYT--VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+++|||||||||||++++++|+++|++ |+.+.|+++. ...+ ..+++++.+|+++++.+.++++++|+|||
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~-----~~~~---~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 74 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG-----KEKI---GGEADVFIGDITDADSINPAFQGIDALVI 74 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH-----HHHT---TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH-----HHhc---cCCcEEEEeeeccccccccccccceeeEE
Confidence 379999999999999999999999976 4455665422 1111 24578999999999999999999999999
Q ss_pred cccCccc--------------CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 86 TASPVIF--------------LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 86 ~A~~~~~--------------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
+|+.... ...........+|+.+++++++.+... ..+++.+.|+. ..+....
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~-~~~~~~~------------ 140 (252)
T d2q46a1 75 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVGSM-GGTNPDH------------ 140 (252)
T ss_dssp CCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEEET-TTTCTTC------------
T ss_pred EEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-ccccccccccc-ccCCCCc------------
Confidence 9985321 011224567788999999999999887 77888888887 3322111
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-CCCC-CCCccee
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-QSFA-FPYIFVE 229 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~i~ 229 (322)
+.. ......|...+.+.+.+ ..+.+++++++||+.+||+...... . +.+. .... ...+++|
T Consensus 141 ---~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~ilRp~~v~g~~~~~~~-~--------~~~~~~~~~~~~~~~i~ 203 (252)
T d2q46a1 141 ---PLN-KLGNGNILVWKRKAEQY----LADSGTPYTIIRAGGLLDKEGGVRE-L--------LVGKDDELLQTDTKTVP 203 (252)
T ss_dssp ---GGG-GGGGCCHHHHHHHHHHH----HHHSSSCEEEEEECEEECSCTTSSC-E--------EEESTTGGGGSSCCEEE
T ss_pred ---ccc-cccccchhhhhhhhhhh----hhcccccceeecceEEECCCcchhh-h--------hhccCcccccCCCCeEE
Confidence 000 00012366666555544 4567999999999999999754321 1 1111 1112 6678999
Q ss_pred HHHHHHHHHHhhcCCCCCc-cEEEec----CCCCHHHHHHHHHHhC
Q 020747 230 IRDVVYAHIRALEVPKASG-RYLLAG----SVAQHSDILKFLREHY 270 (322)
Q Consensus 230 ~~D~a~~~~~~~~~~~~~g-~~~~~~----~~~~~~e~~~~i~~~~ 270 (322)
++|+|++++.+++++...| +|++++ ...+++|+.+.+.+..
T Consensus 204 ~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 204 RADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 9999999999999887666 786653 2456778877776554
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.5e-26 Score=195.83 Aligned_cols=228 Identities=14% Similarity=0.067 Sum_probs=163.4
Q ss_pred CCCCCCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSGEGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||...+++|+++||||+| .||++++++|+++|++|++.+|++... +...+......+...+++|++|+++++++++
T Consensus 1 M~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 78 (256)
T d1ulua_ 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLR--PEAEKLAEALGGALLFRADVTQDEELDALFA 78 (256)
T ss_dssp CEEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHHHHHHTTCCEEEECCTTCHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHH--HHHHHhhhccCcccccccccCCHHHHHHHHH
Confidence 888889999999999998 899999999999999998888764322 2222222223456789999999998887765
Q ss_pred -------CCCEEEEcccCcc---------cCCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCC
Q 020747 79 -------GCDGVFHTASPVI---------FLSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPM 141 (322)
Q Consensus 79 -------~~d~vih~A~~~~---------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~ 141 (322)
++|++||+|+... +.....+...+++|+.++..+++++.+.+ .-+++|++||..+..+.+..
T Consensus 79 ~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~~- 157 (256)
T d1ulua_ 79 GVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKY- 157 (256)
T ss_dssp HHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTC-
T ss_pred HHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCCCc-
Confidence 5799999998532 12233466789999999999999987653 23589999998665544321
Q ss_pred CCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC
Q 020747 142 TPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD 218 (322)
Q Consensus 142 ~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~ 218 (322)
..|+.+|.+.+.+.+.++.++ |++++.|.||.+..+...... ........+....
T Consensus 158 ---------------------~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~-~~~~~~~~~~~~~ 215 (256)
T d1ulua_ 158 ---------------------NVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP-GFTKMYDRVAQTA 215 (256)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------CHHHHHHHHHHS
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh-hhHHHHHHHHhcC
Confidence 569999999999999999875 899999999999887644321 1222333333322
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEecCCC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGSVA 257 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 257 (322)
+...+..++|+|+++++++... ..+|..+..++..
T Consensus 216 ----pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 216 ----PLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (256)
T ss_dssp ----TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ----CCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCE
Confidence 4566788999999999999653 4577665554433
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.94 E-value=1.8e-26 Score=195.16 Aligned_cols=220 Identities=19% Similarity=0.138 Sum_probs=165.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GC 80 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~ 80 (322)
+|.+|||||++.||++++++|+++|++|++.+|++.... +...++...+.++..+++|++|+++++++++ ++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~-~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR-TTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 478899999999999999999999999999999754332 2333343345678999999999999887766 57
Q ss_pred CEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc-----CCccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 81 DGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV-----HSIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 81 d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~-----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
|++||+||... +...+.|++.+++|+.++.++++++.+. .+..++|++||..+..+.+..
T Consensus 81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~---------- 150 (257)
T d2rhca1 81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHA---------- 150 (257)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTC----------
T ss_pred CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccc----------
Confidence 99999999642 2445568899999999999999998653 145689999998666554431
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC--------CCccHHHHHHHHcCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI--------LNFGAEVILNLINGDQ 219 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~--------~~~~~~~~~~~~~g~~ 219 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|-++..... .........++....
T Consensus 151 ------------~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 217 (257)
T d2rhca1 151 ------------APYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV- 217 (257)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS-
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC-
Confidence 569999999999999999885 89999999999987642110 001122233333322
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
+...+..++|+|+++++++.. ...+|..+..+
T Consensus 218 ---PlgR~~~pedia~~v~fL~S~~s~~itG~~i~vD 251 (257)
T d2rhca1 218 ---PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVC 251 (257)
T ss_dssp ---TTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhcCCcCceEEEC
Confidence 456678999999999999964 34677654443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.94 E-value=3.3e-26 Score=192.62 Aligned_cols=224 Identities=14% Similarity=0.161 Sum_probs=164.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
-+++|+++||||++.||++++++|+++|++|++.+|+.+... +..+++. ...++..+++|++|+++++++++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE-KAAKSVG-TPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHC-CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhC-CCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999754321 2222332 34678999999999998887766
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---Cc-cEEEEecchhhhccCCCCCCCCcccc
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SI-KRVVLTSSIGAMLLNETPMTPDVVID 148 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~-~~~i~~SS~~~~~~~~~~~~~~~~~~ 148 (322)
++|++||+||.... ...+.|++.+++|+.++.++.+++.+.+ +. .++|++||..+..+.+..
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~-------- 152 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSL-------- 152 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTC--------
T ss_pred CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCc--------
Confidence 57999999986432 3345577899999999999999876542 32 479999998665544321
Q ss_pred CCCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 149 ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 149 E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
..|+.||.+.+.+.+.++.+ +|++++.|.||.|.++....... ........... +
T Consensus 153 --------------~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~----p 212 (251)
T d1zk4a1 153 --------------GAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEEAMSQRTKT----P 212 (251)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHHHHTSTTTC----T
T ss_pred --------------hhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC--HHHHHHHHhCC----C
Confidence 56999999999999988865 48999999999998875332211 11111111111 4
Q ss_pred CCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
...+..++|+|+++++++.. ...+|..+..++.+|
T Consensus 213 l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~t 249 (251)
T d1zk4a1 213 MGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcccc
Confidence 45678999999999999864 345776655544443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=4.2e-26 Score=190.72 Aligned_cols=210 Identities=19% Similarity=0.132 Sum_probs=160.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|++.+.. +...++ ..+...+++|++|+++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK-AMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh---hCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999764321 222222 3568899999999998887765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... .+.+.|++.+++|+.++.++.+++.+.+ +..+||++||..+..+.+.
T Consensus 80 ~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~----------- 148 (244)
T d1nffa_ 80 GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVA----------- 148 (244)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----------
T ss_pred CCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccccc-----------
Confidence 57999999996432 3345688999999999999998775432 4468999999966654432
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.+.++........ .... +...+
T Consensus 149 -----------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~--------~~~~----pl~R~ 205 (244)
T d1nffa_ 149 -----------CHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED--------IFQT----ALGRA 205 (244)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTT--------CSCC----SSSSC
T ss_pred -----------ccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHH--------HHhc----cccCC
Confidence 1569999999999999999875 89999999999988753221100 0011 44567
Q ss_pred eeHHHHHHHHHHhhcC--CCCCccEEEe
Q 020747 228 VEIRDVVYAHIRALEV--PKASGRYLLA 253 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~--~~~~g~~~~~ 253 (322)
..++|+|+++++++.. ...+|..+..
T Consensus 206 ~~p~diA~~v~fL~s~~s~~itG~~i~v 233 (244)
T d1nffa_ 206 AEPVEVSNLVVYLASDESSYSTGAEFVV 233 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred CCHHHHHHHHHHHhChhhCCCcCCEEEE
Confidence 8999999999999964 3467755433
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.94 E-value=1e-25 Score=191.68 Aligned_cols=226 Identities=17% Similarity=0.222 Sum_probs=165.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
-+++|+++||||++.||++++++|+++|++|++.+|+..... +...++.. ...+.++++|++|+++++++++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~-~~~~~l~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ-KVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhcC-CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999999999754321 22333332 4568889999999999887775
Q ss_pred -CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 -GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 -~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... ...+.++..+++|+.++..+.+++.+.+ +..++|++||..+..+....
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~------- 153 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGV------- 153 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTS-------
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccccc-------
Confidence 68999999996432 1233577899999999999999876542 44689999998665433220
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.|.++..................... ...
T Consensus 154 --------------~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--~~~ 217 (268)
T d2bgka1 154 --------------SHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA--NLK 217 (268)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC--SSC
T ss_pred --------------ccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcc--ccC
Confidence 0359999999999999999874 899999999999998755433322322222221110 023
Q ss_pred CcceeHHHHHHHHHHhhcC--CCCCccEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
..+..++|+|+++++++.. ...+|..+..++
T Consensus 218 gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDG 250 (268)
T d2bgka1 218 GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDG 250 (268)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CCCcCHHHHHHHHHHHhChhhCCccCceEEECc
Confidence 4567899999999999964 346786654433
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=1.1e-26 Score=196.45 Aligned_cols=223 Identities=14% Similarity=0.094 Sum_probs=150.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|++.+.. +...++.....++..+.+|++++++++++++
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELN-ECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999764432 2333333345679999999999998776553
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||.... ...+.++..+++|+.++..+++++.+.+ +..+||++||..+..+.+..
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~--------- 155 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVG--------- 155 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------C---------
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccccccc---------
Confidence 37999999996432 3445678899999999999999876542 45799999998665543321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCc
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 226 (322)
..|+.+|.+.+.+.+.++.++ |++++.|.||.|.+|....... ......+.... +...
T Consensus 156 -------------~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~--~~~~~~~~~~~----pl~R 216 (259)
T d1xq1a_ 156 -------------SIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD--DEFKKVVISRK----PLGR 216 (259)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------
T ss_pred -------------ccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhch--HHHHHHHHhCC----CCCC
Confidence 459999999999999999875 8999999999998876432111 01111111111 4455
Q ss_pred ceeHHHHHHHHHHhhcC--CCCCccEEEecCCC
Q 020747 227 FVEIRDVVYAHIRALEV--PKASGRYLLAGSVA 257 (322)
Q Consensus 227 ~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 257 (322)
+..++|+|+++++++.. ...+|..+..++.+
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 217 FGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 249 (259)
T ss_dssp -CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCE
Confidence 77899999999999954 34577665544333
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.94 E-value=1.4e-25 Score=188.54 Aligned_cols=213 Identities=15% Similarity=0.089 Sum_probs=159.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+++|+++||||++.||++++++|+++|++|++.+|+..+.. +..++ ...++..+++|++|+++++++++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA-ATARE---LGDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHT---TGGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHH---hCCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999763321 22222 24678999999999999887765
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... ...+.+++.+++|+.++.++++++.+. .+..+||++||..+..+.+..
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~--------- 148 (254)
T d1hdca_ 78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALT--------- 148 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC---------
T ss_pred CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccch---------
Confidence 58999999996432 345567889999999999999988653 245799999999766544321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC--CCCC--
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD--QSFA-- 222 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~--~~~~-- 222 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|.++.. ....... ....
T Consensus 149 -------------~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~-----------~~~~~~~~~~~~~~~ 204 (254)
T d1hdca_ 149 -------------SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT-----------AETGIRQGEGNYPNT 204 (254)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH-----------HHHTCCCSTTSCTTS
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccc-----------hhcCHHHHHHHHhCC
Confidence 569999999999999999874 89999999999876531 1111111 1111
Q ss_pred CCCcc-eeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 223 FPYIF-VEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 223 ~~~~~-i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
+...+ ..++|+|+++++++.. ...+|..+..+
T Consensus 205 pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vD 239 (254)
T d1hdca_ 205 PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVD 239 (254)
T ss_dssp TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeC
Confidence 33333 3589999999999964 34677554443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.93 E-value=1.5e-25 Score=189.17 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=162.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||+++++.|+++|++|++.+|+.+... +...++ +.++..+++|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 78 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAAR-ATAAEI---GPAACAIALDVTDQASIDRCVAELLDRWG 78 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999998753321 222332 4578899999999999887766
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... .+.+.|+..+++|+.|+..+.+++.+. ....+||++||..+..+.+..
T Consensus 79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~--------- 149 (256)
T d1k2wa_ 79 SIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALV--------- 149 (256)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTC---------
T ss_pred CccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccc---------
Confidence 58999999996432 345568899999999999999875542 234689999998666544321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--------cHHHHHHHHcCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--------GAEVILNLINGD 218 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--------~~~~~~~~~~g~ 218 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.+-++........ .......+....
T Consensus 150 -------------~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
T d1k2wa_ 150 -------------GVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAV 216 (256)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHS
T ss_pred -------------cchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcC
Confidence 569999999999999999874 89999999999988753210000 000111111111
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcC--CCCCccE-EEecC
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEV--PKASGRY-LLAGS 255 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~-~~~~~ 255 (322)
+...+..++|+|+++++++.. ...+|.. .+.|+
T Consensus 217 ----PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG 252 (256)
T d1k2wa_ 217 ----PFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGG 252 (256)
T ss_dssp ----TTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCcCHHHHHHHHHHHhCchhCCccCceEEECcc
Confidence 556678999999999999854 3457755 44443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.93 E-value=1.2e-25 Score=189.64 Aligned_cols=219 Identities=18% Similarity=0.144 Sum_probs=159.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d 81 (322)
|.++||||++.||++++++|+++|++|++.+|++.+.. +...++...+.++..+++|++|+++++++++ ++|
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK-AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 55799999999999999999999999999999764332 2333333345678999999999998887765 589
Q ss_pred EEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 82 GVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 82 ~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++||+||... +.+.+.|++.+++|+.|+.++++++.+. .+..++|++||..+..+.+.
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~------------- 147 (255)
T d1gega_ 81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPE------------- 147 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTT-------------
T ss_pred EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcc-------------
Confidence 9999999642 2445667889999999999999886542 23457999999866544432
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--------ccHHHHHHHHcCCCCC
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--------FGAEVILNLINGDQSF 221 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~~~~~~g~~~~ 221 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.+-++....... ........+....
T Consensus 148 ---------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (255)
T d1gega_ 148 ---------LAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRI--- 215 (255)
T ss_dssp ---------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTC---
T ss_pred ---------cccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcC---
Confidence 1569999999999999999874 8999999999997764211000 0001111222222
Q ss_pred CCCCcceeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 222 AFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
+...+..++|+|+++++++.. ...+|..+..+
T Consensus 216 -pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vD 249 (255)
T d1gega_ 216 -TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLID 249 (255)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred -CCCCCcCHHHHHHHHHHHhCchhCCccCcEEEec
Confidence 456678999999999999964 34577654443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.93 E-value=1.7e-25 Score=189.45 Aligned_cols=227 Identities=17% Similarity=0.195 Sum_probs=162.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhC-----
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
.+++|++|||||++.||++++++|+++|++|++.+|+..+... ..+++. ..+.++..+++|++|+++++++++
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE-VTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH-HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998765432 222221 124578999999999999887775
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... ...+.+++.+++|+.++.++.+++.+. .+...++.+||......... .+
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~------~~ 158 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS------SL 158 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE------ET
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccc------cc
Confidence 57999999986422 344567889999999999998876553 24456777777633211110 00
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
.+ ......|+.+|.+.+.+.+.++.++ |++++.|.||.|-++..... ............ +.
T Consensus 159 ------~~---~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~---~~~~~~~~~~~~----pl 222 (260)
T d1h5qa_ 159 ------NG---SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---DKKIRDHQASNI----PL 222 (260)
T ss_dssp ------TE---ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS---CHHHHHHHHHTC----TT
T ss_pred ------cc---CccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc---CHHHHHHHHhcC----CC
Confidence 00 0011569999999999999999874 89999999999988764332 122333333333 45
Q ss_pred CcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 225 YIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
..+..++|+|+++++++.+. ..+|..+..+
T Consensus 223 ~R~g~pedvA~~v~fL~S~~s~~itG~~i~VD 254 (260)
T d1h5qa_ 223 NRFAQPEEMTGQAILLLSDHATYMTGGEYFID 254 (260)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEC
T ss_pred CCCcCHHHHHHHHHHHhcchhCCCcCceEEEC
Confidence 56788999999999999643 4577654443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=4.1e-25 Score=187.45 Aligned_cols=224 Identities=17% Similarity=0.136 Sum_probs=157.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc---cCCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL---DGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..... +...++ .....++..+++|++|+++++++++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE-ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999764432 222222 1223568999999999999887766
Q ss_pred ---CCCEEEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhh-hccCCCCCCC
Q 020747 79 ---GCDGVFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGA-MLLNETPMTP 143 (322)
Q Consensus 79 ---~~d~vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~-~~~~~~~~~~ 143 (322)
++|++||+||.... .+.+.|+..+++|+.++.++.+++.+.+ +..++|+++|..+ ..+.+.
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~---- 157 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPD---- 157 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTT----
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCCC----
Confidence 58999999986321 1224577899999999999999987642 2246666666533 333322
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC------ccHHHHHHH
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN------FGAEVILNL 214 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~------~~~~~~~~~ 214 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.|-.+....... ........+
T Consensus 158 ------------------~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (264)
T d1spxa_ 158 ------------------FPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATM 219 (264)
T ss_dssp ------------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHH
T ss_pred ------------------chhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHH
Confidence 1559999999999999999874 8999999999998875332110 011111222
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcC---CCCCccEEEecCC
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEV---PKASGRYLLAGSV 256 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~---~~~~g~~~~~~~~ 256 (322)
.... +...+..++|+|+++++++.+ ...+|..+..++.
T Consensus 220 ~~~~----Pl~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG 260 (264)
T d1spxa_ 220 KECV----PAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGG 260 (264)
T ss_dssp HHHC----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred HhcC----CCCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCC
Confidence 2211 455678899999999999863 3467866554443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.92 E-value=1.9e-24 Score=181.94 Aligned_cols=215 Identities=15% Similarity=0.119 Sum_probs=159.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc--cCCCCcEEEEEccCC-CccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL--DGATERLHLFKANLL-EEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~-~~~~~~~~~~---- 78 (322)
+++|+||||||++.||.+++++|+++|++|+++.|+..+. +.+.++ .....++.++.+|++ +.++++++++
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH--HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998887653 222221 122457899999998 4445655444
Q ss_pred ---CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcC------CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 ---GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH------SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 ---~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~------~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.. ..+.+++.+++|+.|+.++.+++.+.+ ...++|++||..+..+.+..
T Consensus 81 ~~g~iDilvnnAG~~---~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~--------- 148 (254)
T d1sbya1 81 QLKTVDILINGAGIL---DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQV--------- 148 (254)
T ss_dssp HHSCCCEEEECCCCC---CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTS---------
T ss_pred HcCCCCEEEeCCCCC---CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCC---------
Confidence 689999999964 356789999999999999999887643 23579999998776554431
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.||++...+.+.++.++ |++++.|.||.|.++....... .....+.+.. ..
T Consensus 149 -------------~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~-------~~ 208 (254)
T d1sbya1 149 -------------PVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL-------LS 208 (254)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHH-------TT
T ss_pred -------------HHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcc-------cc
Confidence 569999999999999999874 9999999999998863211100 0001111111 23
Q ss_pred CcceeHHHHHHHHHHhhcCCCCCc-cEEEecC
Q 020747 225 YIFVEIRDVVYAHIRALEVPKASG-RYLLAGS 255 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~~~g-~~~~~~~ 255 (322)
+....++++|++++.+++... +| ++.+.++
T Consensus 209 ~~~~~~e~va~~~~~~~~~~~-tG~vi~vdgG 239 (254)
T d1sbya1 209 HPTQTSEQCGQNFVKAIEANK-NGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCC-TTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHhhhCCC-CCCEEEECCC
Confidence 445689999999999988765 55 5566654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.92 E-value=3.7e-25 Score=188.60 Aligned_cols=225 Identities=13% Similarity=0.134 Sum_probs=160.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc---CCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD---GATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+.++.. +...++. ....++..+.+|++|+++++++++
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE-ETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999764322 1222221 223578999999999998887765
Q ss_pred ---CCCEEEEcccCccc-------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVIF-------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|++||+||.... .+.+.|+..+++|+.++..+.+++.+.+ +..+++++||..+..+.+.
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~------ 154 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSG------ 154 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTT------
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCC------
Confidence 57999999985321 1224578899999999999999887642 4457888887644433322
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCC--ccHHHHHHHHcCC-C
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGD-Q 219 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~--~~~~~~~~~~~g~-~ 219 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.|.+|....... ............. .
T Consensus 155 ----------------~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (274)
T d1xhla_ 155 ----------------YPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE 218 (274)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT
T ss_pred ----------------CceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHc
Confidence 1569999999999999999875 8999999999998875322111 1111222222111 1
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcC---CCCCccEEEec
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEV---PKASGRYLLAG 254 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~---~~~~g~~~~~~ 254 (322)
.. +...+..++|+|+++++++.. ...+|..+..+
T Consensus 219 ~i-PlgR~g~pediA~~v~fL~S~d~s~~itG~~i~vD 255 (274)
T d1xhla_ 219 CI-PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVAD 255 (274)
T ss_dssp TC-TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEES
T ss_pred CC-CCCCCcCHHHHHHHHHHHcCCccccCccCcEEEeC
Confidence 11 445577899999999999853 34678664443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.92 E-value=7.8e-25 Score=186.45 Aligned_cols=227 Identities=15% Similarity=0.118 Sum_probs=158.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc---CCCCcEEEEEccCCCccchHHhhC----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD---GATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..+.. +...++. ....++..+++|++|+++++++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~-~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLE-ETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999764322 1222222 223578999999999998887766
Q ss_pred ---CCCEEEEcccCcccC---------CCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecc-hhhhccCCCCCCC
Q 020747 79 ---GCDGVFHTASPVIFL---------SDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSS-IGAMLLNETPMTP 143 (322)
Q Consensus 79 ---~~d~vih~A~~~~~~---------~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS-~~~~~~~~~~~~~ 143 (322)
++|++||+||..... ..+.|.+.+++|+.++.++++++.+.+ +..++|+++| .+...+.+.
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~---- 157 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPD---- 157 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCS----
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCCC----
Confidence 589999999965321 111367889999999999999987642 2245555555 433333322
Q ss_pred CccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc--cHHHHHHHHcCC
Q 020747 144 DVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF--GAEVILNLINGD 218 (322)
Q Consensus 144 ~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~--~~~~~~~~~~g~ 218 (322)
...|+.||.+.+.+.+.++.++ |++++.|.||.|-++........ ............
T Consensus 158 ------------------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
T d1xkqa_ 158 ------------------FLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASH 219 (272)
T ss_dssp ------------------SHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC
T ss_pred ------------------cchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHH
Confidence 1569999999999999999874 89999999999988753322111 111111111111
Q ss_pred -CCCCCCCcceeHHHHHHHHHHhhcC---CCCCccEEEecCC
Q 020747 219 -QSFAFPYIFVEIRDVVYAHIRALEV---PKASGRYLLAGSV 256 (322)
Q Consensus 219 -~~~~~~~~~i~~~D~a~~~~~~~~~---~~~~g~~~~~~~~ 256 (322)
... +...+..++|+|+++++++.. ...+|..+..++.
T Consensus 220 ~~~~-PlgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG 260 (272)
T d1xkqa_ 220 KECI-PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGG 260 (272)
T ss_dssp TTTC-TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred hcCC-CCCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcC
Confidence 111 445678899999999999863 2467866555443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.5e-25 Score=189.31 Aligned_cols=227 Identities=14% Similarity=0.048 Sum_probs=163.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc----c-CCCCcEEEEEccCCCccchHHhhC-
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL----D-GATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
.+++|+++||||++.||++++++|+++|++|++.+|+..+... ...++ . ..+.++..+++|++|+++++++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~-~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS-AADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 3678999999999999999999999999999999997644321 11111 1 124578999999999999887765
Q ss_pred ------CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCC
Q 020747 79 ------GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ------~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
++|++||+||... ....+.++..+++|+.++..+.+++.+.+ +..++|++||. ...+.+.
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~-~~~~~~~----- 161 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPL----- 161 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC-CTTCCTT-----
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccc-ccccccc-----
Confidence 5899999998532 24455688899999999999999887642 34568888765 3322221
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCcc-HHHHHHHHcCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFG-AEVILNLINGDQS 220 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~-~~~~~~~~~g~~~ 220 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.|..+......... ...........
T Consensus 162 -----------------~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-- 222 (297)
T d1yxma1 162 -----------------AVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI-- 222 (297)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS--
T ss_pred -----------------cccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcC--
Confidence 1569999999999999999885 899999999999887543222111 11111111111
Q ss_pred CCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCCCH
Q 020747 221 FAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVAQH 259 (322)
Q Consensus 221 ~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~~ 259 (322)
+...+..++|+|+++++++.. ...+|..+..++..|+
T Consensus 223 --plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 223 --PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 261 (297)
T ss_dssp --TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred --CCCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhh
Confidence 455677899999999999964 3467866555444443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.92 E-value=7.1e-25 Score=183.26 Aligned_cols=219 Identities=18% Similarity=0.130 Sum_probs=162.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+..+.. +.. ...+.++.++++|++++++++++++
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~---~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g 78 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA-EAV---AALEAEAIAVVADVSDPKAVEAVFAEALEEFG 78 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHH---HTCCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHH---HHcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999764321 122 2234678899999999999887665
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
++|++||+|+.... ...+.|...+++|+.++.++.+++.+.+..+ .++++||. +..+.+
T Consensus 79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~-a~~~~~-------------- 143 (241)
T d2a4ka1 79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV-AGLGAF-------------- 143 (241)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC-TTCCHH--------------
T ss_pred CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc-cccccc--------------
Confidence 58999999985322 3445678899999999999999988765433 45555544 322111
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCccee
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVE 229 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~ 229 (322)
. ...|+.+|.+.+.+.+.+++++ |+++++|.||.+-++..... ......+..+.. +...+..
T Consensus 144 ---~-----~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~---~~~~~~~~~~~~----p~~r~~~ 208 (241)
T d2a4ka1 144 ---G-----LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL---PPWAWEQEVGAS----PLGRAGR 208 (241)
T ss_dssp ---H-----HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS---CHHHHHHHHHTS----TTCSCBC
T ss_pred ---C-----ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhh---hHhHHHHHHhCC----CCCCCcC
Confidence 0 1569999999999999999985 79999999999987754321 223344444433 4556778
Q ss_pred HHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 230 IRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 230 ~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
++|+|+++++++.. ...+|..+..++..|
T Consensus 209 p~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 209 PEEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 99999999999964 346786655544443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.92 E-value=4.5e-25 Score=185.73 Aligned_cols=223 Identities=18% Similarity=0.123 Sum_probs=160.9
Q ss_pred CCCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 4 GEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 4 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+.+++|+++||||++.||+++++.|+++|++|++.+|++.... +...++ ..+...+++|++|+++++++++
T Consensus 2 nrL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~-~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQ-QLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh---CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999998753321 222222 3567889999999998887765
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
++|++||+||.... .+.+.|++.+++|+.++..+++++.+.+ ...+||++||..+..+.+.
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~---------- 147 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQ---------- 147 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTT----------
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCccc----------
Confidence 57999999996432 3345678999999999999999987643 2368999999866654432
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
...|+.||.+.+.+.+.++.+. +++++.|.||.|.++......+.. .............+.
T Consensus 148 ------------~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~--~~~~~~~~~~~~~~~ 213 (253)
T d1hxha_ 148 ------------YAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKG--VSKEMVLHDPKLNRA 213 (253)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTT--CCHHHHBCBTTTBTT
T ss_pred ------------cccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcch--hhHHHHHhCcccccc
Confidence 1569999999999999888663 599999999999876421111000 001111111101134
Q ss_pred CcceeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 225 YIFVEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
..+..++|+|+++++++.. ...+|..+..+
T Consensus 214 gr~~~pedvA~~v~fL~S~~s~~itG~~i~VD 245 (253)
T d1hxha_ 214 GRAYMPERIAQLVLFLASDESSVMSGSELHAD 245 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred CCCCCHHHHHHHHHHHhChhhCCCcCcEEEEC
Confidence 4678899999999999964 34677654443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.92 E-value=1.1e-24 Score=184.42 Aligned_cols=225 Identities=21% Similarity=0.172 Sum_probs=163.5
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
...+|+||||||++.||.+++++|+++|++|++.+|+..+.......++...+.++..+++|++|+++++++++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999999999887765443333334444445678999999999998887766
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhc-cCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAML-LNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~-~~~~~~~~~~~~~E~ 150 (322)
.+|++||+||.... ...+.+++.+++|+.++.++++++.+.+ .-++++.++|..+.. +.+.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~~~----------- 151 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPN----------- 151 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCS-----------
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCCCC-----------
Confidence 57999999996432 3445677899999999999999998753 224566666653433 2221
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCC---------CCCCCccHHHHHH-HHcC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFF---------QPILNFGAEVILN-LING 217 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~---------~~~~~~~~~~~~~-~~~g 217 (322)
...|+.+|.+.+.+++.++.++ |+++++|.||.+.++.. ..........+.. +...
T Consensus 152 -----------~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T d1ja9a_ 152 -----------HALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM 220 (259)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhC
Confidence 1559999999999999999874 89999999999976521 0111112222222 3333
Q ss_pred CCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccE-EEecC
Q 020747 218 DQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRY-LLAGS 255 (322)
Q Consensus 218 ~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~-~~~~~ 255 (322)
. +...+..++|+++++++++.+. ..+|.. .+.|+
T Consensus 221 ~----pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 221 N----PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp S----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred C----CCCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 3 5567889999999999999764 357755 44444
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.7e-25 Score=184.29 Aligned_cols=215 Identities=15% Similarity=0.136 Sum_probs=157.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
.+|++|||||++.||++++++|+++|++|++++|+..+.. +...++.. ...++..+++|++|+++++++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV-QCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 4699999999999999999999999999999999764432 22222222 24578999999999999887765
Q ss_pred -CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCC------ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 -GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHS------IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 -~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~------~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|++||+||... ..++++.+++|+.++.++.+++.+.+. ..+||++||.++..+.+..
T Consensus 81 G~iDilVnnAg~~~---~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~----------- 146 (254)
T d2gdza1 81 GRLDILVNNAGVNN---EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQ----------- 146 (254)
T ss_dssp SCCCEEEECCCCCC---SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTC-----------
T ss_pred CCcCeecccccccc---cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCc-----------
Confidence 5899999999753 456789999999999999888765421 2579999999776554431
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHH--HHHH---cCccEEEEcCCCccCCCCCCCCC--------ccHHHHHHHHcCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWK--FAKE---NGIDLVAIHPGTVIGPFFQPILN--------FGAEVILNLINGD 218 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~--~~~~---~~~~~~~~rp~~v~G~~~~~~~~--------~~~~~~~~~~~g~ 218 (322)
..|+.||.+.+.+.++ ++.+ +|++++.|.||.|-++....... .....+....
T Consensus 147 -----------~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~--- 212 (254)
T d2gdza1 147 -----------PVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMI--- 212 (254)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHH---
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcC---
Confidence 5699999999999885 3433 58999999999998764221110 0011111111
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCCCCCccE-EEec
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVPKASGRY-LLAG 254 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~~-~~~~ 254 (322)
+...+..++|+|+++++++.++..+|.. .+.|
T Consensus 213 ----p~~r~~~pedvA~~v~fL~s~~~itG~~i~VdG 245 (254)
T d2gdza1 213 ----KYYGILDPPLIANGLITLIEDDALNGAIMKITT 245 (254)
T ss_dssp ----HHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEET
T ss_pred ----CCCCCcCHHHHHHHHHHHHcCCCCCCCEEEECC
Confidence 2234567999999999999887778855 4443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.92 E-value=8.3e-25 Score=182.62 Aligned_cols=197 Identities=12% Similarity=0.144 Sum_probs=153.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCe-------EEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYT-------VKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.||||||++.||++++++|+++|++ |++.+|+..+.. +...++...+.++..+++|++|+++++++++
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~-~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLE-KISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHH-HHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987 777888654321 2333444446788999999999998887665
Q ss_pred ---CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccc
Q 020747 79 ---GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVI 147 (322)
Q Consensus 79 ---~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~ 147 (322)
++|++||+||.... .+.+.+++.+++|+.|+..+.+++.+.+ +.+++|++||..+..+.+..
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~------- 154 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHS------- 154 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTC-------
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCC-------
Confidence 58999999996432 4456788999999999999999987653 45689999999766544321
Q ss_pred cCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCC
Q 020747 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFP 224 (322)
Q Consensus 148 ~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (322)
..|+.||.+.+.+.+.++.+. |++++.|.||.|-++........ ..
T Consensus 155 ---------------~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~~----------------~~ 203 (240)
T d2bd0a1 155 ---------------SIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE----------------MQ 203 (240)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST----------------TG
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCHh----------------hH
Confidence 569999999999999998874 89999999999988754321110 12
Q ss_pred CcceeHHHHHHHHHHhhcCCC
Q 020747 225 YIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 225 ~~~i~~~D~a~~~~~~~~~~~ 245 (322)
..+..++|+|+++++++..+.
T Consensus 204 ~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 204 ALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp GGSBCHHHHHHHHHHHHTSCT
T ss_pred hcCCCHHHHHHHHHHHHcCCc
Confidence 234579999999999998753
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2e-24 Score=179.77 Aligned_cols=212 Identities=15% Similarity=0.100 Sum_probs=155.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~d~vi 84 (322)
+++|+++||||++.||++++++|+++|++|++.+|++ +.+++. ..+++.+|+++. +.+.+.+.++|++|
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~-----~~l~~~-----~~~~~~~Dv~~~~~~~~~~~g~iD~lV 71 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-----ELLKRS-----GHRYVVCDLRKDLDLLFEKVKEVDILV 71 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHT-----CSEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-----HHHHhc-----CCcEEEcchHHHHHHHHHHhCCCcEEE
Confidence 5789999999999999999999999999999999875 233332 236788999863 22334445799999
Q ss_pred EcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCCCCCcc
Q 020747 85 HTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPV 156 (322)
Q Consensus 85 h~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~ 156 (322)
|+||... +.+.+.+++.+++|+.++..+++++.+.+ +..++|++||.....+.+.
T Consensus 72 nnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~----------------- 134 (234)
T d1o5ia_ 72 LNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIEN----------------- 134 (234)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTT-----------------
T ss_pred ecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccc-----------------
Confidence 9998532 23455678899999999999998876542 4468999999855443322
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHH
Q 020747 157 LCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDV 233 (322)
Q Consensus 157 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~ 233 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.+..+....... ......+.... +...+..++|+
T Consensus 135 -----~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~--~~~~~~~~~~~----pl~R~~~pedi 203 (234)
T d1o5ia_ 135 -----LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS--EEKKKQVESQI----PMRRMAKPEEI 203 (234)
T ss_dssp -----BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC--HHHHHHHHTTS----TTSSCBCHHHH
T ss_pred -----cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcC--HHHHHHHHhcC----CCCCCcCHHHH
Confidence 1559999999999999999874 8999999999998875332111 11222333332 55667889999
Q ss_pred HHHHHHhhcC--CCCCccEEEecC
Q 020747 234 VYAHIRALEV--PKASGRYLLAGS 255 (322)
Q Consensus 234 a~~~~~~~~~--~~~~g~~~~~~~ 255 (322)
|+++++++.. ...+|..+..++
T Consensus 204 A~~v~fL~S~~s~~itG~~i~vDG 227 (234)
T d1o5ia_ 204 ASVVAFLCSEKASYLTGQTIVVDG 227 (234)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEEST
T ss_pred HHHHHHHhChhhcCCcCcEEEECc
Confidence 9999999864 345776654443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.92 E-value=2.5e-24 Score=185.76 Aligned_cols=227 Identities=16% Similarity=0.079 Sum_probs=160.4
Q ss_pred CCCC-CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhcc-CCCCcEEEEEccCCCccchHHhhC
Q 020747 1 MMSG-EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELD-GATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 1 mm~~-~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
||.. .+++|+++||||+|.||++++++|+++|++|++++|+..+.. +..+++. ..+.++..+++|++++++++++++
T Consensus 17 ~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~-~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~ 95 (294)
T d1w6ua_ 17 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLK-ATAEQISSQTGNKVHAIQCDVRDPDMVQNTVS 95 (294)
T ss_dssp CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHHHHHhcCCceEEEEecccChHHHHHHhh
Confidence 4533 578899999999999999999999999999999999864432 2222221 124578899999999998876654
Q ss_pred -------CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----CCccEEEEecchhhhccCCCCCC
Q 020747 79 -------GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----HSIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 79 -------~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
++|++||+||.... .....+...+.+|..+...+...+... .+...++.+||..+..+.+..
T Consensus 96 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~-- 173 (294)
T d1w6ua_ 96 ELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFV-- 173 (294)
T ss_dssp HHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTC--
T ss_pred hhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhccccc--
Confidence 68999999996432 223345677888998888887664322 234567788877554433321
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCC
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ 219 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~ 219 (322)
..|+.+|.+.+.+.+.++.++ |+++++|.||.|.++....................
T Consensus 174 --------------------~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~- 232 (294)
T d1w6ua_ 174 --------------------VPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI- 232 (294)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC-
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcC-
Confidence 569999999999999999874 89999999999988765433222223344444433
Q ss_pred CCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 220 SFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 220 ~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
+...+..++|+|+++.+++.. ...+|..+..+
T Consensus 233 ---pl~R~~~pediA~~v~fL~sd~s~~itG~~i~vD 266 (294)
T d1w6ua_ 233 ---PCGRLGTVEELANLAAFLCSDYASWINGAVIKFD 266 (294)
T ss_dssp ---TTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred ---CCCCCCCHHHHHHHHHHHhCchhcCCCCcEEEEC
Confidence 556678899999999999965 34678654443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.91 E-value=1.4e-23 Score=178.74 Aligned_cols=225 Identities=18% Similarity=0.076 Sum_probs=163.6
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
++++|+++||||++.||+++++.|+++|++|++.+|+..+...+...++...+.++..+++|++|+++++++++
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999876543333334444445678999999999998887765
Q ss_pred -CCCEEEEcccCcc-----cCCCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCC
Q 020747 79 -GCDGVFHTASPVI-----FLSDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETW 151 (322)
Q Consensus 79 -~~d~vih~A~~~~-----~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~ 151 (322)
++|++||+|+... ....+.+.+.+++|+.++..+++++.+.+. -+++++++|..+..+...
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~------------ 162 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVP------------ 162 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCS------------
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccccccc------------
Confidence 5799999998642 244556778999999999999999987643 357788877644322111
Q ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCC--------CCCccH-HHHH-HHHcCC
Q 020747 152 FSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQP--------ILNFGA-EVIL-NLINGD 218 (322)
Q Consensus 152 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~--------~~~~~~-~~~~-~~~~g~ 218 (322)
....|+.+|++.+.+.+.++.++ |++++.|.||.|-++.... ...... .... ......
T Consensus 163 ---------~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (272)
T d1g0oa_ 163 ---------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWS 233 (272)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSC
T ss_pred ---------chhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccC
Confidence 11559999999999999999874 9999999999997753110 001111 1111 122222
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEec
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAG 254 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~ 254 (322)
+...+..++|+|+++.+++... ..+|..+..+
T Consensus 234 ----PlgR~~~peevA~~v~fL~s~~s~~itG~~i~vD 267 (272)
T d1g0oa_ 234 ----PLRRVGLPIDIARVVCFLASNDGGWVTGKVIGID 267 (272)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred ----CCCCCcCHHHHHHHHHHHhCchhcCccCceEeEC
Confidence 4566889999999999999653 3577664443
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.5e-24 Score=177.38 Aligned_cols=221 Identities=15% Similarity=0.105 Sum_probs=162.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC---CCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---GCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---~~d~ 82 (322)
+++|+++||||++.||+++++.|+++|++|++.+|++. .++++.. ...+....+|+.+.+.++...+ ++|+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~-----~l~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~id~ 77 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES-----KLQELEK-YPGIQTRVLDVTKKKQIDQFANEVERLDV 77 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH-----HHGGGGG-STTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHh-ccCCceeeeecccccccccccccccccee
Confidence 67899999999999999999999999999999999753 2333322 3457888899988776665544 7899
Q ss_pred EEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhh-ccCCCCCCCCccccCCCCC
Q 020747 83 VFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAM-LLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 83 vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~-~~~~~~~~~~~~~~E~~~~ 153 (322)
+||+||.... .+.+.|+..+++|+.++..+.+++.+. .+..++|++||..+. .+...
T Consensus 78 lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~-------------- 143 (245)
T d2ag5a1 78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVN-------------- 143 (245)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTT--------------
T ss_pred EEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccc--------------
Confidence 9999996432 345578899999999999999987653 244689999987442 22211
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCC---CCccHHHHHHHHcCCCCCCCCCcc
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPI---LNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.+|.+.+.+++.++.++ |++++.|.||.|.+|..... ..........+.... +...+
T Consensus 144 --------~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~----pl~R~ 211 (245)
T d2ag5a1 144 --------RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ----KTGRF 211 (245)
T ss_dssp --------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC----TTSSC
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcC----CCCCC
Confidence 1569999999999999999885 89999999999988753210 011112223333333 55678
Q ss_pred eeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 228 VEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
..++|+|+++.+++.. ...+|..+..++.+|
T Consensus 212 ~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 212 ATAEEIAMLCVYLASDESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp EEHHHHHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred cCHHHHHHHHHHHhChhhCCCcCceEEeCCCcC
Confidence 8999999999999974 346787655554443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.3e-24 Score=179.60 Aligned_cols=211 Identities=20% Similarity=0.183 Sum_probs=152.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC--CCCcEEEEEccCCCccchHHhhC-----
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG--ATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
+++|++|||||++.||.++++.|+++|++|++.+|+..+.. +...++.. ...++..+++|++++++++++++
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~-~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998754322 22222222 13578899999999998887665
Q ss_pred --CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc----C-CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 --GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV----H-SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 --~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~----~-~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
++|++||+||.... .+.+.++..+++|+.++.++.+++.+. . +..++|++||..+..+.+.
T Consensus 87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~------- 159 (257)
T d1xg5a_ 87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPL------- 159 (257)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSC-------
T ss_pred cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCC-------
Confidence 58999999996432 345567889999999999988886542 1 2469999999855432221
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE-----NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
+ ....|+.+|.+.+.+.+.++.+ +++++++|.||.+-.+.................
T Consensus 160 --------~-----~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~------ 220 (257)
T d1xg5a_ 160 --------S-----VTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY------ 220 (257)
T ss_dssp --------G-----GGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH------
T ss_pred --------c-----ccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC------
Confidence 0 1145999999999999999865 489999999998876532111111111111111
Q ss_pred CCCCcceeHHHHHHHHHHhhcCC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~ 244 (322)
+...++.++|+|+++++++..+
T Consensus 221 -~~~r~~~pedvA~~v~fL~s~~ 242 (257)
T d1xg5a_ 221 -EQMKCLKPEDVAEAVIYVLSTP 242 (257)
T ss_dssp -C---CBCHHHHHHHHHHHHHSC
T ss_pred -CCCCCcCHHHHHHHHHHHhCCh
Confidence 4456788999999999999775
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.91 E-value=4.3e-24 Score=182.12 Aligned_cols=225 Identities=14% Similarity=0.084 Sum_probs=160.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+++|+++||||++.||++++++|+++|++|++++|+.++.. +...+. ..++..+.+|++++++++++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~-~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLA-ELETDH---GDNVLGIVGDVRSLEDQKQAASRCVARFG 78 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHc---CCCeeEEecccccHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999753321 111111 3578999999999998877665
Q ss_pred CCCEEEEcccCccc------CCC----CCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCcc
Q 020747 79 GCDGVFHTASPVIF------LSD----NPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~------~~~----~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~ 146 (322)
.+|++||+||.... ... +.|++.+++|+.++..+++++.+.+ +..++|++||..+..+.+..
T Consensus 79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~~~~------ 152 (276)
T d1bdba_ 79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGG------ 152 (276)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTTSSC------
T ss_pred CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCCCCC------
Confidence 68999999996422 111 1367889999999999999886542 23688999988665544321
Q ss_pred ccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc--CccEEEEcCCCccCCCCCCCCCcc------HHHHHHHHcCC
Q 020747 147 IDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN--GIDLVAIHPGTVIGPFFQPILNFG------AEVILNLINGD 218 (322)
Q Consensus 147 ~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~rp~~v~G~~~~~~~~~~------~~~~~~~~~g~ 218 (322)
..|+.||.+.+.+.+.++.+. +++++.|.||.|-.+...+..... ...........
T Consensus 153 ----------------~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (276)
T d1bdba_ 153 ----------------PLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSV 216 (276)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTT
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhc
Confidence 569999999999999999875 699999999999887543221110 00011111111
Q ss_pred CCCCCCCcceeHHHHHHHHHHhhcC---CCCCccEEEecCCCCH
Q 020747 219 QSFAFPYIFVEIRDVVYAHIRALEV---PKASGRYLLAGSVAQH 259 (322)
Q Consensus 219 ~~~~~~~~~i~~~D~a~~~~~~~~~---~~~~g~~~~~~~~~~~ 259 (322)
. +...+..++|+|+++++++.. ...+|..+..++.++.
T Consensus 217 ~---PlgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~~ 257 (276)
T d1bdba_ 217 L---PIGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLGV 257 (276)
T ss_dssp C---TTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGGG
T ss_pred C---CCCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChhh
Confidence 0 455677899999999998752 3567866555444443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=6.3e-24 Score=187.71 Aligned_cols=223 Identities=16% Similarity=0.159 Sum_probs=158.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc-hHHhhCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS-FDSAVDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~vih~ 86 (322)
.|+|+|||||||||++|+++|+++||+|+++.|+.+......+.. ..+++.+++|++|+.+ +++++.++|.+++.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~----~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~ 78 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQA----IPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 78 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHT----STTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcc----cCCCEEEEeeCCCcHHHHHHHhcCCceEEee
Confidence 589999999999999999999999999999999876543322222 3568999999998655 67889999998876
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHH
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYS 166 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~ 166 (322)
.... ...|+..+.++++++.+. +++++++.||......... .+. ..|.
T Consensus 79 ~~~~-----------~~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~~--------------~~~------~~~~ 126 (350)
T d1xgka_ 79 TTSQ-----------AGDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYGP--------------WPA------VPMW 126 (350)
T ss_dssp CCST-----------TSCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTSS--------------CCC------CTTT
T ss_pred cccc-----------cchhhhhhhHHHHHHHHh-CCCceEEEeeccccccCCc--------------ccc------hhhh
Confidence 5321 124678889999999998 8888888888632221111 000 3377
Q ss_pred HHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCC-----CCCC-CCCcceeH-HHHHHHHHH
Q 020747 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGD-----QSFA-FPYIFVEI-RDVVYAHIR 239 (322)
Q Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~-----~~~~-~~~~~i~~-~D~a~~~~~ 239 (322)
.+|...+..+. +.+++++++||+.+++........... ......+. +..+ ..+.++++ +|+++++..
T Consensus 127 ~~k~~~~~~~~----~~~~~~~~vr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~ 200 (350)
T d1xgka_ 127 APKFTVENYVR----QLGLPSTFVYAGIYNNNFTSLPYPLFQ--MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQ 200 (350)
T ss_dssp HHHHHHHHHHH----TSSSCEEEEEECEEGGGCBSSSCSSCB--EEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHH
T ss_pred hhHHHHHHHHH----hhccCceeeeeceeecccccccccccc--ccccccccceeeecccCCCcceEEEeHHHHHHHHHH
Confidence 78888877654 568999999999988764332221100 00111222 1112 56677876 799999999
Q ss_pred hhcCCC--CCc-cEEEecCCCCHHHHHHHHHHhCCC
Q 020747 240 ALEVPK--ASG-RYLLAGSVAQHSDILKFLREHYPT 272 (322)
Q Consensus 240 ~~~~~~--~~g-~~~~~~~~~~~~e~~~~i~~~~~~ 272 (322)
++..+. ..| .|+++++.+|++|+++.+.+.+|.
T Consensus 201 ~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G~ 236 (350)
T d1xgka_ 201 IFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR 236 (350)
T ss_dssp HHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred HHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHCC
Confidence 986542 234 778888889999999999999864
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-24 Score=181.87 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=153.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+..+|+++||||++.||++++++|+++|++|++.+|+..+.. +...++...+.++..+.+|++|+++++++++
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~-~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE-ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999999764432 2223333345689999999999999887665
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCccccC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVIDE 149 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E 149 (322)
.+|++||+||.... ...+.+++.+++|+.|+.++++++.+. .+.++||++||..+..+.+.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~---------- 152 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF---------- 152 (244)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHH----------
T ss_pred CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCC----------
Confidence 58999999996433 223346789999999999999987654 25578999999866543321
Q ss_pred CCCCCcccccccchhHHHHHHHHHHHHHHHHHH------cCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 150 TWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE------NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 150 ~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
...|+.||++.+.+.+.++.+ .|++++.+.||.|-.+..... ...
T Consensus 153 ------------~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~-------~~~---------- 203 (244)
T d1yb1a_ 153 ------------LLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-------STS---------- 203 (244)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-------HHH----------
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc-------Ccc----------
Confidence 156999999999999999876 379999999999877653321 011
Q ss_pred CCcceeHHHHHHHHHHhhcCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~~~ 245 (322)
....+.++|+|+.++..+..+.
T Consensus 204 ~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 204 LGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp HCCCCCHHHHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHHhcCC
Confidence 1223468999999998887643
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.90 E-value=7.5e-24 Score=178.29 Aligned_cols=215 Identities=12% Similarity=-0.002 Sum_probs=156.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------CCCE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-------GCDG 82 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------~~d~ 82 (322)
+++||||++.||++++++|+++|++|++.+|+..... .++... ..+.++|+++.++++++++ ++|+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~--~~~~~~-----~~~~~~dv~~~~~~~~~~~~~~~~~G~iDi 74 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD--ELEAFA-----ETYPQLKPMSEQEPAELIEAVTSAYGQVDV 74 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH--HHHHHH-----HHCTTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH--HHHhhh-----CcEEEeccCCHHHHHHHHHHHHHHcCCCCE
Confidence 7899999999999999999999999999998764432 222211 1234689999988877665 6899
Q ss_pred EEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 83 VFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 83 vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+||+||.... ...++|++.+++|+.++.++++++.+.+ +..+||++||..+..+.+..
T Consensus 75 LVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~------------- 141 (252)
T d1zmta1 75 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKEL------------- 141 (252)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTC-------------
T ss_pred EEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccc-------------
Confidence 9999985321 2334577899999999999999876542 45799999998665443321
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCc-----cHHHHHHHHcCCCCCCCCC
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNF-----GAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.||.+.+.+.+.++.++ |++++.|.||.|.++........ .......+.+.. +..
T Consensus 142 ---------~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~----pl~ 208 (252)
T d1zmta1 142 ---------STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT----ALQ 208 (252)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS----SSS
T ss_pred ---------cccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcC----CCC
Confidence 569999999999999999875 89999999999988765432211 122233333222 445
Q ss_pred cceeHHHHHHHHHHhhcCC--CCCccEEEecCCC
Q 020747 226 IFVEIRDVVYAHIRALEVP--KASGRYLLAGSVA 257 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 257 (322)
.+..++|+|+++++++... ..+|..+..++.+
T Consensus 209 R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 209 RLGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp SCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCc
Confidence 6788999999999999654 3567665444433
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.5e-23 Score=175.91 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=154.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-----hhhhhccCCCCcEEEEEccCCCccchHHhhC-----
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-----EHLRELDGATERLHLFKANLLEEGSFDSAVD----- 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 78 (322)
|.||||||++.||++++++|+++|.+|+.+.+...+... +...++.....++..+.+|++|+++++++++
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g 82 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG 82 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence 567899999999999999999999887666543332211 1222333446689999999999999988765
Q ss_pred CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 ~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|++||+|+.... ...+.+++.+++|+.|+.++++++.+.+ +-+++|++||..+..+.+..
T Consensus 83 ~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~---------- 152 (285)
T d1jtva_ 83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFN---------- 152 (285)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTC----------
T ss_pred chhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCc----------
Confidence 47999999986432 3455678899999999999999876542 45799999999777655431
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHH--------HHHHHcCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEV--------ILNLINGDQ 219 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~--------~~~~~~g~~ 219 (322)
..|+.||.+.+.+.+.++.+. |+++++|.||.|-.+............ ..+......
T Consensus 153 ------------~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (285)
T d1jtva_ 153 ------------DVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLA 220 (285)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHH
Confidence 569999999999999999884 999999999999887544322111110 000000000
Q ss_pred CC-C-CCCcceeHHHHHHHHHHhhcCCCCCccEEEe
Q 020747 220 SF-A-FPYIFVEIRDVVYAHIRALEVPKASGRYLLA 253 (322)
Q Consensus 220 ~~-~-~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~ 253 (322)
.. . .......++|+|++++.+++.++..-.|+..
T Consensus 221 ~~~~~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g 256 (285)
T d1jtva_ 221 HSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTT 256 (285)
T ss_dssp HHHHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESC
T ss_pred HHhhhhcccCCCHHHHHHHHHHHHhCCCCCeEEecH
Confidence 00 0 1123457999999999999886544455443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.7e-22 Score=167.10 Aligned_cols=213 Identities=18% Similarity=0.177 Sum_probs=153.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+.|+|+++||||++.||.+++++|+++|++|++++|+.+... +...++ ..+......|+.+..+++....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE-AQAKKL---GNNCVFAPADVTSEKDVQTALALAKGKF 77 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH-HHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHh---CCCccccccccccccccccccccccccc
Confidence 468999999999999999999999999999999999875542 222333 3467888999998876654443
Q ss_pred -CCCEEEEcccCccc-----------CCCCCcchhhhHHHHHHHHHHHHHhhcC---------CccEEEEecchhhhccC
Q 020747 79 -GCDGVFHTASPVIF-----------LSDNPQADIVDPAVMGTLNVLRSCAKVH---------SIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~---------~~~~~i~~SS~~~~~~~ 137 (322)
..|.++++++.... ...+.+++.+++|+.++.++.+++.+.+ +..+||++||.++..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~ 157 (248)
T d2o23a1 78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQ 157 (248)
T ss_dssp SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC
T ss_pred ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCC
Confidence 56888888764221 1223567889999999999999985531 23589999999776654
Q ss_pred CCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHH
Q 020747 138 ETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNL 214 (322)
Q Consensus 138 ~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~ 214 (322)
+.. ..|+.+|.+.+.+.+.++.++ |++++.|.||.+..+....... ......
T Consensus 158 ~~~----------------------~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~---~~~~~~ 212 (248)
T d2o23a1 158 VGQ----------------------AAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE---KVCNFL 212 (248)
T ss_dssp TTC----------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------------CHH
T ss_pred CCc----------------------hHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCH---HHHHHH
Confidence 431 569999999999999999885 8999999999998876432111 111111
Q ss_pred HcCCCCCCCCCcceeHHHHHHHHHHhhcCCCCCcc
Q 020747 215 INGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGR 249 (322)
Q Consensus 215 ~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~~~~g~ 249 (322)
....+ ....+..++|+|+++++++++...+|.
T Consensus 213 ~~~~p---l~~R~g~peevA~~v~fL~s~~~itGq 244 (248)
T d2o23a1 213 ASQVP---FPSRLGDPAEYAHLVQAIIENPFLNGE 244 (248)
T ss_dssp HHTCS---SSCSCBCHHHHHHHHHHHHHCTTCCSC
T ss_pred HhcCC---CCCCCcCHHHHHHHHHHHHhCCCCCce
Confidence 21111 123467899999999999987766674
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=3.7e-23 Score=178.11 Aligned_cols=205 Identities=19% Similarity=0.059 Sum_probs=149.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh----hhhhhcc-CCCCcEEEEEccCCCccchHHhhC--
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT----EHLRELD-GATERLHLFKANLLEEGSFDSAVD-- 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~-- 78 (322)
+++|+++||||++.||++++++|+++|++|++.+|+.+.... ..+.+.. ....+...+.+|++|.++.+++++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 84 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA 84 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence 578999999999999999999999999999999887543211 1111111 001223456788888887766554
Q ss_pred -----CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC---CccEEEEecchhhhccCCCCCCCCc
Q 020747 79 -----GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH---SIKRVVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 -----~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~---~~~~~i~~SS~~~~~~~~~~~~~~~ 145 (322)
++|++||+||.... ...+.|+..+++|+.|+.++++++.+.+ +.++||++||..+.++.+..
T Consensus 85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~----- 159 (302)
T d1gz6a_ 85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQ----- 159 (302)
T ss_dssp HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTC-----
T ss_pred HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCc-----
Confidence 68999999996432 3455678999999999999999976642 45799999999777765432
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
..|+.||.+.+.+.+.++.+. |++++.|.||.+-.+.... ...-+
T Consensus 160 -----------------~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~----~~~~~----------- 207 (302)
T d1gz6a_ 160 -----------------ANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV----MPEDL----------- 207 (302)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG----SCHHH-----------
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc----CcHhh-----------
Confidence 569999999999999999885 8999999999764432211 11111
Q ss_pred CCCcceeHHHHHHHHHHhhcCC-CCCcc
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP-KASGR 249 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~-~~~g~ 249 (322)
..++.++|+|.++++++... ..+|.
T Consensus 208 --~~~~~PedvA~~v~fL~S~~a~itG~ 233 (302)
T d1gz6a_ 208 --VEALKPEYVAPLVLWLCHESCEENGG 233 (302)
T ss_dssp --HHHSCGGGTHHHHHHHTSTTCCCCSC
T ss_pred --HhcCCHHHHHHHHHHHcCCCcCCCCc
Confidence 22345899999999998643 34553
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=4e-23 Score=174.75 Aligned_cols=218 Identities=17% Similarity=0.064 Sum_probs=155.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHH---CCCeEEEEEeCCCCcChhhhhhcc--CCCCcEEEEEccCCCccchHHhhC-
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQ---RGYTVKATVRDPNSPKTEHLRELD--GATERLHLFKANLLEEGSFDSAVD- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~- 78 (322)
.+++|.++||||++.||.+++++|++ +|++|++++|+.+... +...++. ..+.++..+++|++++++++++++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~-~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR-QLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH-HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHH-HHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999986 7999999999764332 2222221 124578999999999998887753
Q ss_pred ----------CCCEEEEcccCccc--------CCCCCcchhhhHHHHHHHHHHHHHhhcCC-----ccEEEEecchhhhc
Q 020747 79 ----------GCDGVFHTASPVIF--------LSDNPQADIVDPAVMGTLNVLRSCAKVHS-----IKRVVLTSSIGAML 135 (322)
Q Consensus 79 ----------~~d~vih~A~~~~~--------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~-----~~~~i~~SS~~~~~ 135 (322)
..|++||+||.... ...+.+++.+++|+.++..+.+++.+.+. .+++|++||..+..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 24799999985321 12235678999999999999999987632 35899999986665
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-CccEEEEcCCCccCCCCCCCC--CccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-GIDLVAIHPGTVIGPFFQPIL--NFGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~rp~~v~G~~~~~~~--~~~~~~~~ 212 (322)
+.+.. ..|+.||.+.+.+.+.++.+. |++++.|.||.|.++...... ........
T Consensus 162 ~~~~~----------------------~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~ 219 (259)
T d1oaaa_ 162 PYKGW----------------------GLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp CCTTC----------------------HHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred CCccc----------------------hHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHH
Confidence 44321 569999999999999999875 999999999999887421100 00111111
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC-CCCcc
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVP-KASGR 249 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~-~~~g~ 249 (322)
.+.... ....+..++|+|++++.+++.. ..+|.
T Consensus 220 ~~~~~~----~~~r~~~p~evA~~i~~ll~~~s~~TG~ 253 (259)
T d1oaaa_ 220 KLQKLK----SDGALVDCGTSAQKLLGLLQKDTFQSGA 253 (259)
T ss_dssp HHHHHH----HTTCSBCHHHHHHHHHHHHHHCCSCTTE
T ss_pred HHHhcC----CCCCCCCHHHHHHHHHHHhhhccCCCCC
Confidence 111100 2234578999999999988653 34553
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.88 E-value=1.6e-22 Score=171.15 Aligned_cols=206 Identities=19% Similarity=0.193 Sum_probs=152.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhCC-----
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVDG----- 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----- 79 (322)
..+++||||+|.||.+++++|+++|+ +|+++.|+..+... +...++...+.++.++.+|++|+++++++++.
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 57999999999999999999999998 47777886433221 33344444457899999999999999888763
Q ss_pred -CCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCCCCccccCCCCC
Q 020747 80 -CDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFS 153 (322)
Q Consensus 80 -~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~ 153 (322)
+|.|||+||.... ...+.+...+++|+.++.++.+++... +.++||++||..+..+.+..
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~SS~a~~~g~~~~------------- 154 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFSSFASAFGAPGL------------- 154 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEEEHHHHTCCTTC-------------
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeecchhhccCCccc-------------
Confidence 5899999996533 233446678999999999999998886 67899999999888766542
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHcCccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHH
Q 020747 154 NPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDV 233 (322)
Q Consensus 154 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~ 233 (322)
..|+.+|...+.+.+++.. .|++++.|.||.+.+++.... .....+.. .-...+.++++
T Consensus 155 ---------~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~~------~~~~~~~~-----~G~~~~~~~~~ 213 (259)
T d2fr1a1 155 ---------GGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG------PVADRFRR-----HGVIEMPPETA 213 (259)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC------------------CTT-----TTEECBCHHHH
T ss_pred ---------HHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccccc------hHHHHHHh-----cCCCCCCHHHH
Confidence 4599999999999988865 499999999999887654221 01111111 22345779999
Q ss_pred HHHHHHhhcCCCCCc
Q 020747 234 VYAHIRALEVPKASG 248 (322)
Q Consensus 234 a~~~~~~~~~~~~~g 248 (322)
++++..++.++....
T Consensus 214 ~~~l~~~l~~~~~~~ 228 (259)
T d2fr1a1 214 CRALQNALDRAEVCP 228 (259)
T ss_dssp HHHHHHHHHTTCSSC
T ss_pred HHHHHHHHhCCCceE
Confidence 999999998865443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.87 E-value=9.8e-22 Score=165.02 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=132.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHH---CCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQ---RGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
||+||||||++.||.+++++|++ +|++|++.+|++++.. .+.++.....++.++.+|++|+++++++++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 79 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK--ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT 79 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH--HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH--HHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence 48999999999999999999974 7999999999876652 333333335689999999999998876544
Q ss_pred ---CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--------------CccEEEEecchhhhc
Q 020747 79 ---GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--------------SIKRVVLTSSIGAML 135 (322)
Q Consensus 79 ---~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--------------~~~~~i~~SS~~~~~ 135 (322)
.+|++||+||.... ...+.+++.+++|+.|+..+++++.+.+ +..++|++||..+..
T Consensus 80 ~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~ 159 (248)
T d1snya_ 80 KDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSI 159 (248)
T ss_dssp GGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCS
T ss_pred hcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 47999999996432 2223466799999999999999875431 346899999975432
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCC
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQ 201 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~ 201 (322)
.... .+ ....|+.||++...+.+.++.++ |++++.+.||.|-.+...
T Consensus 160 ~~~~--------------~~-----~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~ 209 (248)
T d1snya_ 160 QGNT--------------DG-----GMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGG 209 (248)
T ss_dssp TTCC--------------SC-----CCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTC
T ss_pred CCCC--------------CC-----ChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCccc
Confidence 2111 00 01459999999999999998774 899999999999887643
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=9.2e-22 Score=166.29 Aligned_cols=225 Identities=16% Similarity=0.092 Sum_probs=160.4
Q ss_pred CCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+++|+||||||+| .||+++++.|+++|++|++.+|++... +...+......+...++.|+++..+....++
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLK--GRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTH--HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHH--HHHHHHHhhcCCcceeecccchHHHHHHHHHHhhh
Confidence 36789999999999 899999999999999999999975432 2333333223456788899998877665553
Q ss_pred ---CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCC
Q 020747 79 ---GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 79 ---~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
..|++||+|+.... ...+.+...+++|+.+...+.+++...+ +.+.+|++||..+..+.+.
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~----- 154 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPN----- 154 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTT-----
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCC-----
Confidence 45999999976322 1222345678889999999999887753 2346888888755544332
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
...|+.||.+.+.+++.++.+. |++++.|+||.|.++....... ............
T Consensus 155 -----------------~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~--- 213 (258)
T d1qsga_ 155 -----------------YNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKD-FRKMLAHCEAVT--- 213 (258)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTT-HHHHHHHHHHHS---
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccch-hhhHHHHHHhCC---
Confidence 1559999999999999999885 7999999999999886543221 122222333222
Q ss_pred CCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
+...+..++|+|+++.+++.+ ...+|..+..++..+
T Consensus 214 -pl~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 214 -PIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp -TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 445678899999999999965 346786655444443
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.86 E-value=9e-21 Score=159.24 Aligned_cols=205 Identities=18% Similarity=0.176 Sum_probs=139.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+.|+||||||++.||.+++++|+++|+ +|++.+|+..+. +.+.+. ...++.++++|++|+++++++++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~--~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 77 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSI--KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTC--CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHh--hCCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence 348999999999999999999999995 688888876443 222222 24579999999999988876654
Q ss_pred ---CCCEEEEcccCccc------CCCCCcchhhhHHHHHHHHHHHHHhhcC--------------CccEEEEecchhhhc
Q 020747 79 ---GCDGVFHTASPVIF------LSDNPQADIVDPAVMGTLNVLRSCAKVH--------------SIKRVVLTSSIGAML 135 (322)
Q Consensus 79 ---~~d~vih~A~~~~~------~~~~~~~~~~~~N~~~~~~l~~~~~~~~--------------~~~~~i~~SS~~~~~ 135 (322)
.+|++||+||.... ...+.+++.+++|+.|+.++.+++.+.+ ...+++.+||.....
T Consensus 78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 157 (250)
T d1yo6a1 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence 38999999996432 1122466799999999999999876431 124678888763332
Q ss_pred cCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHH
Q 020747 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVIL 212 (322)
Q Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~ 212 (322)
..... . ... .+...|+.||++...+.+.++.++ |++++.+.||.|-.+....
T Consensus 158 ~~~~~--------~-~~~------~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~---------- 212 (250)
T d1yo6a1 158 TDNTS--------G-SAQ------FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK---------- 212 (250)
T ss_dssp TTCCS--------T-TSS------SCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-----------------
T ss_pred cCCcc--------c-ccc------hhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCC----------
Confidence 22110 0 000 111459999999999999999875 8999999999987654211
Q ss_pred HHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEE
Q 020747 213 NLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLL 252 (322)
Q Consensus 213 ~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~ 252 (322)
...+.+++.++.++..+... ..+|.|+.
T Consensus 213 ------------~~~~~~e~~a~~~~~~~~~~~~~~sG~f~~ 242 (250)
T d1yo6a1 213 ------------NAALTVEQSTAELISSFNKLDNSHNGRFFM 242 (250)
T ss_dssp ------------------HHHHHHHHHHHTTCCGGGTTCEEE
T ss_pred ------------CCCCCHHHHHHHHHHHHhcCCCCCCeEEEC
Confidence 01135788888888888653 24566653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.9e-21 Score=165.17 Aligned_cols=202 Identities=14% Similarity=0.070 Sum_probs=148.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhc-cCCCCcEEEEEccCCCccchHHhhC------
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-DGATERLHLFKANLLEEGSFDSAVD------ 78 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~------ 78 (322)
+++|+++||||++.||++++++|+++|++|++++|+..+... ...+. .........+.+|+++.+....+++
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQK-VVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999998644322 11111 1124567889999998877665443
Q ss_pred -CCCEEEEcccCccc-----CCCCCcchhhhHHHHHHHHHHHHHhhcC--CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF-----LSDNPQADIVDPAVMGTLNVLRSCAKVH--SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~-----~~~~~~~~~~~~N~~~~~~l~~~~~~~~--~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
.+|+++|+||.... ...+.+.+.+++|+.++..+.+.+.+.+ +-+++|++||..+..+.+..
T Consensus 91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~~---------- 160 (269)
T d1xu9a_ 91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV---------- 160 (269)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTC----------
T ss_pred CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCCCc----------
Confidence 57999999986432 2233456789999999999999886542 23689999998666554431
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
..|+.||++.+.+.+.++.++ +++++.+.||.|-++. ..+...+. ...
T Consensus 161 ------------~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~-----------~~~~~~~~----~~~ 213 (269)
T d1xu9a_ 161 ------------AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-----------AMKAVSGI----VHM 213 (269)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH-----------HHHHSCGG----GGG
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcH-----------HHHhccCC----ccc
Confidence 569999999999999998763 6899999999886642 22222222 223
Q ss_pred cceeHHHHHHHHHHhhcCCC
Q 020747 226 IFVEIRDVVYAHIRALEVPK 245 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~~ 245 (322)
....++++++.++......+
T Consensus 214 ~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 214 QAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp GCBCHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHhhcCC
Confidence 34568999999998776543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=9.9e-22 Score=167.52 Aligned_cols=220 Identities=17% Similarity=0.092 Sum_probs=148.8
Q ss_pred CcEE-EEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-------
Q 020747 8 EKVV-CVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------- 78 (322)
Q Consensus 8 ~~~i-lVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------- 78 (322)
+|+| +||||++.||.+++++|+++ |++|++.+|+.++.. +..+++.....++.++++|++|.++++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ-AAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHH-HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 4556 89999999999999999986 899999999875432 3333444345678999999999998877655
Q ss_pred CCCEEEEcccCcccC-----CCCCcchhhhHHHHHHHHHHHHHhhcCC-ccEEEEecchhhhccCCCCCCC------Ccc
Q 020747 79 GCDGVFHTASPVIFL-----SDNPQADIVDPAVMGTLNVLRSCAKVHS-IKRVVLTSSIGAMLLNETPMTP------DVV 146 (322)
Q Consensus 79 ~~d~vih~A~~~~~~-----~~~~~~~~~~~N~~~~~~l~~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~------~~~ 146 (322)
++|++||+||..... ..+.++..+++|+.|+..+++++.+.+. -.++|++||..+..+.....+. ...
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~ 160 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 160 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccc
Confidence 579999999975331 1224567899999999999999987642 3589999998665432210000 000
Q ss_pred cc---------------CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc-------CccEEEEcCCCccCCCCCCCC
Q 020747 147 ID---------------ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-------GIDLVAIHPGTVIGPFFQPIL 204 (322)
Q Consensus 147 ~~---------------E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~~rp~~v~G~~~~~~~ 204 (322)
.. ....... ...+...|+.||.+...+.+.++.+. |++++.+.||.|-.+...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~- 237 (275)
T d1wmaa1 161 ITEEELVGLMNKFVEDTKKGVHQK--EGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK- 237 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTT--TTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT-
T ss_pred cchhhhccccccchhccccccccc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc-
Confidence 00 0000000 00112459999999998887766543 89999999999987653221
Q ss_pred CccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC----CCCccEEE
Q 020747 205 NFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP----KASGRYLL 252 (322)
Q Consensus 205 ~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~----~~~g~~~~ 252 (322)
....++|.|+.++.++..+ ...|.|+-
T Consensus 238 ---------------------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~~ 268 (275)
T d1wmaa1 238 ---------------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVS 268 (275)
T ss_dssp ---------------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred ---------------------ccCCHHHHHHHHHHHHcCChhhcCCCeEEEE
Confidence 1125889999888876432 23566654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=4.1e-21 Score=159.85 Aligned_cols=190 Identities=15% Similarity=0.032 Sum_probs=139.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH-------hhC-
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS-------AVD- 78 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-------~~~- 78 (322)
++|+|+||||+|.||++++++|+++|++|+++++...... .....+..|..+.++.+. .+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----------SASVIVKMTDSFTEQADQVTAEVGKLLGD 69 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----------SEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----------cccceeecccCcHHHHHHHHHHHHHHhCC
Confidence 3699999999999999999999999999999988765432 122344555554444332 222
Q ss_pred -CCCEEEEcccCccc---C---CCCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCC
Q 020747 79 -GCDGVFHTASPVIF---L---SDNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDET 150 (322)
Q Consensus 79 -~~d~vih~A~~~~~---~---~~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~ 150 (322)
++|++||+||.... . ..+.++..+++|+.++.++.+++.+.+ +-++||++||.++..+.+.
T Consensus 70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~----------- 138 (236)
T d1dhra_ 70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPG----------- 138 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT-----------
T ss_pred CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCccC-----------
Confidence 47999999985321 1 123466789999999999999988753 3468999999866544332
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCC
Q 020747 151 WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPY 225 (322)
Q Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (322)
...|+.||++.+.+.+.++.+. |++++.+.||.+..|... ...... ..-
T Consensus 139 -----------~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~-----------~~~~~~----~~~ 192 (236)
T d1dhra_ 139 -----------MIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR-----------KSMPEA----DFS 192 (236)
T ss_dssp -----------BHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHH-----------HHSTTS----CGG
T ss_pred -----------CcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcch-----------hhCccc----hhh
Confidence 1569999999999999998763 799999999999876421 111111 234
Q ss_pred cceeHHHHHHHHHHhhcCC
Q 020747 226 IFVEIRDVVYAHIRALEVP 244 (322)
Q Consensus 226 ~~i~~~D~a~~~~~~~~~~ 244 (322)
.+..++|+++.+.+++...
T Consensus 193 ~~~~pe~va~~~~~l~s~~ 211 (236)
T d1dhra_ 193 SWTPLEFLVETFHDWITGN 211 (236)
T ss_dssp GSEEHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHhCCC
Confidence 5678999999999998754
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.6e-20 Score=156.96 Aligned_cols=207 Identities=21% Similarity=0.190 Sum_probs=149.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC------CCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD------GCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------~~d~ 82 (322)
|+++||||++.||++++++|+++|++|++.+|++... +...+++|+++......+.. ..+.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 68 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE-------------DLIYVEGDVTREEDVRRAVARAQEEAPLFA 68 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS-------------SSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc-------------cceEeeccccchhhhHHHHHhhhccccccc
Confidence 8999999999999999999999999999999976432 34677899988776655443 3355
Q ss_pred EEEcccCccc---------CCCCCcchhhhHHHHHHHHHHHHHhhc---------CCccEEEEecchhhhccCCCCCCCC
Q 020747 83 VFHTASPVIF---------LSDNPQADIVDPAVMGTLNVLRSCAKV---------HSIKRVVLTSSIGAMLLNETPMTPD 144 (322)
Q Consensus 83 vih~A~~~~~---------~~~~~~~~~~~~N~~~~~~l~~~~~~~---------~~~~~~i~~SS~~~~~~~~~~~~~~ 144 (322)
+++.++.... ...+.+.+.+++|+.+..++++.+... .+..+||++||..+..+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~---- 144 (241)
T d1uaya_ 69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQ---- 144 (241)
T ss_dssp EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTC----
T ss_pred hhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCc----
Confidence 5555543211 112245678899999999988876542 134689999999777655431
Q ss_pred ccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCC
Q 020747 145 VVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSF 221 (322)
Q Consensus 145 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~ 221 (322)
..|+.+|.+.+.+.+.++.+. |++++.|.||.|..+...... ...........+
T Consensus 145 ------------------~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~---~~~~~~~~~~~~-- 201 (241)
T d1uaya_ 145 ------------------AAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP---EKAKASLAAQVP-- 201 (241)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC---HHHHHHHHTTCC--
T ss_pred ------------------hhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhh---hhHHHHHHhcCC--
Confidence 569999999999999999874 899999999999887543321 222233333222
Q ss_pred CCCCcceeHHHHHHHHHHhhcCCCCCccEEEecCC
Q 020747 222 AFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSV 256 (322)
Q Consensus 222 ~~~~~~i~~~D~a~~~~~~~~~~~~~g~~~~~~~~ 256 (322)
....+..++|+|+++++++++...+|..+..++.
T Consensus 202 -~~~R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG 235 (241)
T d1uaya_ 202 -FPPRLGRPEEYAALVLHILENPMLNGEVVRLDGA 235 (241)
T ss_dssp -SSCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred -CCCCCcCHHHHHHHHHHHHhCCCCCCCEEEECCc
Confidence 1234668999999999999877778866544433
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.84 E-value=9.3e-21 Score=157.66 Aligned_cols=187 Identities=17% Similarity=0.111 Sum_probs=135.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH-------Hhh--CC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD-------SAV--DG 79 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~-------~~~--~~ 79 (322)
.||+||||+|.||++++++|+++|++|++++|++.+... ....+.+|..+.+... ..+ .+
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 71 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD-----------SNILVDGNKNWTEQEQSILEQTASSLQGSQ 71 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS-----------EEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc-----------ccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999998754321 2344456665544332 222 24
Q ss_pred CCEEEEcccCccc---CC---CCCcchhhhHHHHHHHHHHHHHhhcC-CccEEEEecchhhhccCCCCCCCCccccCCCC
Q 020747 80 CDGVFHTASPVIF---LS---DNPQADIVDPAVMGTLNVLRSCAKVH-SIKRVVLTSSIGAMLLNETPMTPDVVIDETWF 152 (322)
Q Consensus 80 ~d~vih~A~~~~~---~~---~~~~~~~~~~N~~~~~~l~~~~~~~~-~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~ 152 (322)
+|++||+||.... .. .+.++..+++|+.++..+.+++.+.+ +-.++|++||..+..+.+.
T Consensus 72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~------------- 138 (235)
T d1ooea_ 72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPS------------- 138 (235)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTT-------------
T ss_pred eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCccc-------------
Confidence 7999999996322 11 22456689999999999999987753 2358999999866654432
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcc
Q 020747 153 SNPVLCKENKEWYSLAKTLAEEAAWKFAKEN-----GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIF 227 (322)
Q Consensus 153 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 227 (322)
...|+.||.+.+.+.+.++.++ +++++.+.||.+-.+. ........ ....+
T Consensus 139 ---------~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~-----------~~~~~~~~----~~~~~ 194 (235)
T d1ooea_ 139 ---------MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-----------NRKWMPNA----DHSSW 194 (235)
T ss_dssp ---------BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH-----------HHHHSTTC----CGGGC
T ss_pred ---------ccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc-----------hhhhCcCC----ccccC
Confidence 1569999999999999998774 7789999999886643 22222222 34557
Q ss_pred eeHHHHHHHHHHhhcC
Q 020747 228 VEIRDVVYAHIRALEV 243 (322)
Q Consensus 228 i~~~D~a~~~~~~~~~ 243 (322)
+.++|+++.++..+..
T Consensus 195 ~~~~~va~~~~~~l~~ 210 (235)
T d1ooea_ 195 TPLSFISEHLLKWTTE 210 (235)
T ss_dssp BCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcC
Confidence 7899999998865544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.83 E-value=8.5e-20 Score=155.41 Aligned_cols=225 Identities=14% Similarity=0.073 Sum_probs=146.1
Q ss_pred CCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
++++|++|||||+| .||.+++++|+++|++|++.+|++... +...++.........+.+|+++.++++++++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~--~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE--KRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH--HHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence 46789999999887 799999999999999999999975322 3333333334556778999999988776664
Q ss_pred ---CCCEEEEcccCccc------CCCCCcchhhhH---HHHHHHHHHHHHhhcCCccE-EEEecchhhhccCCCCCCCCc
Q 020747 79 ---GCDGVFHTASPVIF------LSDNPQADIVDP---AVMGTLNVLRSCAKVHSIKR-VVLTSSIGAMLLNETPMTPDV 145 (322)
Q Consensus 79 ---~~d~vih~A~~~~~------~~~~~~~~~~~~---N~~~~~~l~~~~~~~~~~~~-~i~~SS~~~~~~~~~~~~~~~ 145 (322)
.+|++||++|.... .....+...... +..+...+.....+..+..+ ++.+|+. +......
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~-~~~~~~~------ 152 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYL-GSTKYMA------ 152 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECG-GGTSBCT------
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccc-ccccccc------
Confidence 57999999996432 111222222222 22233444444443323334 4555554 3322211
Q ss_pred cccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCC
Q 020747 146 VIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFA 222 (322)
Q Consensus 146 ~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (322)
....|+.+|.+.+.+++.++.+. |+++++|.||.+..+....... ............
T Consensus 153 ---------------~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~-~~~~~~~~~~~~---- 212 (274)
T d2pd4a1 153 ---------------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD-FRMILKWNEINA---- 212 (274)
T ss_dssp ---------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT-HHHHHHHHHHHS----
T ss_pred ---------------cchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCc-hHHHHHHHhhhh----
Confidence 01569999999999999998874 8999999999999876443221 111111111212
Q ss_pred CCCcceeHHHHHHHHHHhhcCC--CCCccEEEecCCCC
Q 020747 223 FPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGSVAQ 258 (322)
Q Consensus 223 ~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~~ 258 (322)
+...+..++|+|+++++++... ..+|..+..++..+
T Consensus 213 p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 213 PLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChh
Confidence 5567788999999999999753 46776655554443
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=2.8e-19 Score=152.90 Aligned_cols=220 Identities=15% Similarity=0.036 Sum_probs=144.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEE-----------------EEEccCCCc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLH-----------------LFKANLLEE 70 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~-----------------~~~~Dl~~~ 70 (322)
..++||||++.||++++++|+++|++|++.+|+..+.......++.. ...... ...+|++++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 68999999999999999999999999999888654322211111110 112233 345567777
Q ss_pred cchHHhhC-------CCCEEEEcccCcccC-----CCCCc--------------chhhhHHHHHHHHHHHHHhhc-----
Q 020747 71 GSFDSAVD-------GCDGVFHTASPVIFL-----SDNPQ--------------ADIVDPAVMGTLNVLRSCAKV----- 119 (322)
Q Consensus 71 ~~~~~~~~-------~~d~vih~A~~~~~~-----~~~~~--------------~~~~~~N~~~~~~l~~~~~~~----- 119 (322)
++++++++ ++|++||+||..... ..+.+ ..++.+|+.++..+.+++.+.
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 77776654 689999999965321 11111 236789999999998875432
Q ss_pred ----CCccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcC
Q 020747 120 ----HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHP 192 (322)
Q Consensus 120 ----~~~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp 192 (322)
.+..++|+++|.....+.+. ...|+.+|.+.+.+.+.++.++ |++++.|.|
T Consensus 163 ~~~~~~~~~ii~~~s~~~~~~~~~----------------------~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~P 220 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTNQPLLG----------------------YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 220 (284)
T ss_dssp GGGSCSCEEEEEECCTTTTSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHhcCCCCcccccccccccCCccc----------------------eeeeccccccchhhhHHHHHHhCCcccccccccc
Confidence 12346888888744433322 1569999999999999999874 899999999
Q ss_pred CCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCCC
Q 020747 193 GTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVAQ 258 (322)
Q Consensus 193 ~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~~ 258 (322)
|.+-.... .............+ ....+..++|+|+++++++.. ...+|..+..++.+|
T Consensus 221 G~t~~~~~-----~~~~~~~~~~~~~p---l~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~s 280 (284)
T d1e7wa_ 221 GLSVLVDD-----MPPAVWEGHRSKVP---LYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 280 (284)
T ss_dssp SSBCCGGG-----SCHHHHHHHHTTCT---TTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cccccccc-----CCHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChh
Confidence 97433221 12233444443332 124567899999999999964 346786655544443
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.81 E-value=2e-18 Score=148.51 Aligned_cols=229 Identities=12% Similarity=0.010 Sum_probs=146.5
Q ss_pred CCCCCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcCh-----------hhhhhccCCCCcE-EEEEcc-
Q 020747 2 MSGEGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKT-----------EHLRELDGATERL-HLFKAN- 66 (322)
Q Consensus 2 m~~~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------~~~~~~~~~~~~~-~~~~~D- 66 (322)
|..++++|++|||||+| .||.+++++|+++|.+|++.+|+...... ........ .... ....+|
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGS-LMEIKKVYPLDA 80 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSS-BCCEEEEEEECT
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhh-hhhhhhhhhhhh
Confidence 45568899999999987 89999999999999999999885321100 00000000 0111 122222
Q ss_pred -------------------CCCccchHHhh-------CCCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHH
Q 020747 67 -------------------LLEEGSFDSAV-------DGCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVL 113 (322)
Q Consensus 67 -------------------l~~~~~~~~~~-------~~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~ 113 (322)
..+...+++++ .++|++||+||... +.+.+.+...+++|+.++.+++
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~ 160 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence 22333333333 36899999998532 1334457789999999999999
Q ss_pred HHHhhcCC-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH----cCccEE
Q 020747 114 RSCAKVHS-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE----NGIDLV 188 (322)
Q Consensus 114 ~~~~~~~~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ 188 (322)
+++...+. -++++.+++.......... ...|+.+|.+.+.+.+.++.+ +|++++
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------------~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN 219 (297)
T d1d7oa_ 161 SHFLPIMNPGGASISLTYIASERIIPGY---------------------GGGMSSAKAALESDTRVLAFEAGRKQNIRVN 219 (297)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSCCTTC---------------------TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hHHHHHhhcCCcceeeeehhhccccccc---------------------ccceecccccccccccccchhccccceEEec
Confidence 99887532 2345566655333221110 145999999999887776654 489999
Q ss_pred EEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCC
Q 020747 189 AIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVA 257 (322)
Q Consensus 189 ~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 257 (322)
.|.||.+.++..... .............. +...+..++|+|+++++++.. ...+|..+..++.+
T Consensus 220 ~I~PG~i~T~~~~~~-~~~~~~~~~~~~~~----PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 220 TISAGPLGSRAAKAI-GFIDTMIEYSYNNA----PIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp EEEECCCBCCCSSCC-SHHHHHHHHHHHHS----SSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ccccccccchhhhhc-cCCHHHHHHHHhCC----CCCCCCCHHHHHHHHHHHhCchhcCCcCceEEECcCH
Confidence 999999998865432 22223333333322 445678899999999999964 45678665554433
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.79 E-value=3.6e-19 Score=150.94 Aligned_cols=222 Identities=12% Similarity=0.121 Sum_probs=144.5
Q ss_pred CCCCcEEEEECCcc--hhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC----
Q 020747 5 EGEEKVVCVTGASG--FVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD---- 78 (322)
Q Consensus 5 ~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~---- 78 (322)
.+++|+++||||+| .||.+++++|+++|++|++.+|+..+.. +.+.+ ....+...+++|++++++++++++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~-~~~~~--~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI-QRITD--RLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH-HHHHT--TSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH-HHHHH--HcCCceeeEeeecccccccccccchhhh
Confidence 46789999999654 6999999999999999999988764321 11222 224567788999999876655433
Q ss_pred ------CCCEEEEcccCccc----------CCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccCCCCCC
Q 020747 79 ------GCDGVFHTASPVIF----------LSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMT 142 (322)
Q Consensus 79 ------~~d~vih~A~~~~~----------~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~ 142 (322)
.+|+++|+||.... .....+...+..|+.......+......+...++.++|.....+.+.
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~--- 156 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPA--- 156 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTT---
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCcc---
Confidence 35999999985421 11123344567777777777777766533344555555422222211
Q ss_pred CCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCC-----CCCCcc---HHHH
Q 020747 143 PDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQ-----PILNFG---AEVI 211 (322)
Q Consensus 143 ~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~-----~~~~~~---~~~~ 211 (322)
...|+.+|.+.+.+.+.++.++ |++++.|.||.|-++... ...... ...+
T Consensus 157 -------------------~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 217 (268)
T d2h7ma1 157 -------------------YNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLL 217 (268)
T ss_dssp -------------------THHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHH
T ss_pred -------------------cchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHH
Confidence 1569999999999999999875 899999999999875321 001100 1111
Q ss_pred HH-HHcCCCCCCCCCcceeHHHHHHHHHHhhcC--CCCCccEEEec
Q 020747 212 LN-LINGDQSFAFPYIFVEIRDVVYAHIRALEV--PKASGRYLLAG 254 (322)
Q Consensus 212 ~~-~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~ 254 (322)
.. .....| -.+.+..++|+|+++.+++.. ...+|..+..+
T Consensus 218 ~~~~~~~~p---l~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vD 260 (268)
T d2h7ma1 218 EEGWDQRAP---IGWNMKDATPVAKTVCALLSDWLPATTGDIIYAD 260 (268)
T ss_dssp HHHHHHHCT---TCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEES
T ss_pred HHHHHhcCC---CCCCCCCHHHHHHHHHHHhCchhcCccCCEEEEC
Confidence 11 111111 234577899999999999964 34577654443
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.78 E-value=1.5e-17 Score=140.67 Aligned_cols=219 Identities=18% Similarity=0.138 Sum_probs=142.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC-CCCcEEEEEccCCCccc----hHHh-------
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-ATERLHLFKANLLEEGS----FDSA------- 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~----~~~~------- 76 (322)
.+++||||++.||.+++++|+++|++|++.+|+..+.......++.. ...+...++.|..+... ++++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999865432222222221 23466777777765443 2222
Q ss_pred hCCCCEEEEcccCcccCC----------------CCCcchhhhHHHHHHHHHHHHHhhcC--------CccEEEEecchh
Q 020747 77 VDGCDGVFHTASPVIFLS----------------DNPQADIVDPAVMGTLNVLRSCAKVH--------SIKRVVLTSSIG 132 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~----------------~~~~~~~~~~N~~~~~~l~~~~~~~~--------~~~~~i~~SS~~ 132 (322)
+.++|++||+||...... ...+...+..|+.+............ ....++.+|+..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 236899999999643211 01123455667777666666655432 223566677764
Q ss_pred hhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHH
Q 020747 133 AMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAE 209 (322)
Q Consensus 133 ~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~ 209 (322)
...+.+. ...|+.||++.+.+.+.++.++ |++++.|.||.+..+...+ ..
T Consensus 162 ~~~~~~~----------------------~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~-----~~ 214 (266)
T d1mxha_ 162 TDLPLPG----------------------FCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP-----QE 214 (266)
T ss_dssp GGSCCTT----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC-----HH
T ss_pred ccccCcc----------------------hhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC-----HH
Confidence 3322221 1569999999999999999874 8999999999988765332 22
Q ss_pred HHHHHHcCCCCCCCCCcceeHHHHHHHHHHhhcCC--CCCccEEEecCCC
Q 020747 210 VILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVP--KASGRYLLAGSVA 257 (322)
Q Consensus 210 ~~~~~~~g~~~~~~~~~~i~~~D~a~~~~~~~~~~--~~~g~~~~~~~~~ 257 (322)
....+.+..+ -.+.+..++|+|+++++++.+. ..+|..+..++.+
T Consensus 215 ~~~~~~~~~p---l~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~ 261 (266)
T d1mxha_ 215 TQEEYRRKVP---LGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 261 (266)
T ss_dssp HHHHHHTTCT---TTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhcCC---CCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECccH
Confidence 2333333221 1133568999999999999753 4678655444433
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.76 E-value=1.8e-17 Score=144.28 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=117.1
Q ss_pred CcEEEEEC--CcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh-----------hhhhhccCCCCcEEEEE----------
Q 020747 8 EKVVCVTG--ASGFVASWLVKLLLQRGYTVKATVRDPNSPKT-----------EHLRELDGATERLHLFK---------- 64 (322)
Q Consensus 8 ~~~ilVtG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------~~~~~~~~~~~~~~~~~---------- 64 (322)
+|.+|||| +++.||.++++.|+++|.+|++.++....... .................
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 47899999 55799999999999999999988765421110 00000000011112222
Q ss_pred ----------ccCCCccchHHhhC-------CCCEEEEcccCcc-------cCCCCCcchhhhHHHHHHHHHHHHHhhcC
Q 020747 65 ----------ANLLEEGSFDSAVD-------GCDGVFHTASPVI-------FLSDNPQADIVDPAVMGTLNVLRSCAKVH 120 (322)
Q Consensus 65 ----------~Dl~~~~~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~~N~~~~~~l~~~~~~~~ 120 (322)
+|+++.+.++++++ ++|++||+||... +...+.|...+++|+.++..+++++.+.+
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 35556666665544 6899999998532 23345677899999999999999998864
Q ss_pred C-ccEEEEecchhhhccCCCCCCCCccccCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH----cCccEEEEcCCCc
Q 020747 121 S-IKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKE----NGIDLVAIHPGTV 195 (322)
Q Consensus 121 ~-~~~~i~~SS~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~~rp~~v 195 (322)
. -+++|.+||..+..+.+. . .+.|+.+|.+.+.+++.++.+ +|++++.|.||.|
T Consensus 162 ~~~GsIv~iss~~~~~~~p~---------------y------~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i 220 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKVVPG---------------Y------GGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL 220 (329)
T ss_dssp EEEEEEEEEECGGGTSCCTT---------------C------TTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred ccccccccceeehhcccccc---------------c------chhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence 2 358999998754432221 0 145999999999999998865 4899999999998
Q ss_pred cC
Q 020747 196 IG 197 (322)
Q Consensus 196 ~G 197 (322)
-.
T Consensus 221 ~T 222 (329)
T d1uh5a_ 221 KS 222 (329)
T ss_dssp CC
T ss_pred cc
Confidence 66
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.74 E-value=5.2e-17 Score=136.53 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=129.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh--------hCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA--------VDGC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--------~~~~ 80 (322)
|.|+||||++.||++++++|+++|++|++++|+..+. ..|+.+....+.. ...+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~------------------~~d~~~~~~~~~~~~~~~~~~~~~i 63 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV------------------IADLSTAEGRKQAIADVLAKCSKGM 63 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE------------------ECCTTSHHHHHHHHHHHHTTCTTCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH------------------HHHhcCHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999999999999875432 2455554433322 1257
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhc---CCccEEEEecchhhhccCCCCCCCCcccc---------
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV---HSIKRVVLTSSIGAMLLNETPMTPDVVID--------- 148 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~---~~~~~~i~~SS~~~~~~~~~~~~~~~~~~--------- 148 (322)
|+++|+|+.... ...+.....+|..+...+.+..... ........+++....+.............
T Consensus 64 d~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s 141 (257)
T d1fjha_ 64 DGLVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp SEEEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred cEEEEcCCCCCc--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEee
Confidence 999999986433 3445677888988888877665432 13345556655422221110000000000
Q ss_pred --CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHc---CccEEEEcCCCccCCCCCCCCCccHHHHHHHHcCCCCCCC
Q 020747 149 --ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN---GIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAF 223 (322)
Q Consensus 149 --E~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~rp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (322)
-.....+ ....|+.||.+.+.+.+.++.++ |++++.|.||.+-++....... .........+... +
T Consensus 142 ~~~~~~~~~-----~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~~---P 212 (257)
T d1fjha_ 142 IVEHAGEQG-----GNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ-DPRYGESIAKFVP---P 212 (257)
T ss_dssp HHHTCCTTH-----HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------------CCC---S
T ss_pred ehhccCCCc-----chHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC-CHHHHHHHHhcCC---C
Confidence 0000001 11359999999999999998774 8999999999998875432211 0111111111111 3
Q ss_pred CCcceeHHHHHHHHHHhhcC--CCCCccEEEecCCC
Q 020747 224 PYIFVEIRDVVYAHIRALEV--PKASGRYLLAGSVA 257 (322)
Q Consensus 224 ~~~~i~~~D~a~~~~~~~~~--~~~~g~~~~~~~~~ 257 (322)
...+..++|+|+++.+++.. ...+|..+..++.+
T Consensus 213 lgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG~ 248 (257)
T d1fjha_ 213 MGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp TTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred CCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCCc
Confidence 45577899999999999964 34678665554443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.39 E-value=1.6e-14 Score=115.50 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++++|+|+||||+|+||+++++.|+++|++|++++|+..+... ..+++.. ..++....+|++|.+++++++.++|+||
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA-AADSVNK-RFKVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHH-HHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHH-HHHHHHh-ccchhhhhhhcccHHHHHHHhcCcCeee
Confidence 5789999999999999999999999999999999998654322 1122211 2345678899999999999999999999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
|+||.
T Consensus 98 n~Ag~ 102 (191)
T d1luaa1 98 TAGAI 102 (191)
T ss_dssp ECCCT
T ss_pred ecCcc
Confidence 99985
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=1.1e-07 Score=70.91 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=76.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
||.|+||+|.+|++++..|..+|. ++..++..+... +. ..+... ..+.....- ....+..+.++++|+||.+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~--~a-~Dl~~~-~~~~~~~~~-~~~~~~~~~~~~aDivVita 76 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG--VA-ADLSHI-ETRATVKGY-LGPEQLPDCLKGCDVVVIPA 76 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH--HH-HHHTTS-SSSCEEEEE-ESGGGHHHHHTTCSEEEECC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch--hh-HHHhhh-hhhcCCCeE-EcCCChHHHhCCCCEEEECC
Confidence 799999999999999999999884 677788654211 11 111111 111111111 12355667889999999999
Q ss_pred cCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 88 SPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 88 ~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|..... .....++.+.|+...+.+++.+.+. +.+.++.+-|
T Consensus 77 g~~~~~-g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt 117 (144)
T d1mlda1 77 GVPRKP-GMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS 117 (144)
T ss_dssp SCCCCT-TCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred CcCCCC-CCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 964333 2344688999999999999999998 5555555444
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.55 E-value=4.1e-07 Score=67.76 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=75.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChh----hhhh-ccCCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTE----HLRE-LDGATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~----~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
|||.|+||+|.+|+.++..|+.+| .++..++++++....+ .+.. .......++....--.|+ +.++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~aD 76 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDESD 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccce
Confidence 479999999999999999999998 4888888865321111 1111 111122223222111122 2567899
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEe
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~ 128 (322)
+||-+||..... .....++++.|..-.+.+++.+.+. +.+.++.+
T Consensus 77 vVVitAG~~~~~-g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~iivV 121 (145)
T d1hyea1 77 VVIITSGVPRKE-GMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIFVI 121 (145)
T ss_dssp EEEECCSCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEC
T ss_pred EEEEecccccCC-CCChhhhhhhhHHHHHHHHHHHhcc-CCCeEEEE
Confidence 999999964332 2344688999999999999999998 55566544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.54 E-value=1.7e-07 Score=70.13 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+.|||.|+|+ |++|+.++..|+.+| .+|+++++.+.....+. +..............+| ++ .++++|+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d---~~----~~~~adi 75 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE---YS----DCKDADL 75 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC---GG----GGTTCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc---HH----HhccccE
Confidence 4579999995 999999999999988 58999998753321111 11111111223344444 33 3578999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||.+||...... ....+....|+.-.+.+++.+.+. +.+.++.+-|
T Consensus 76 vvitag~~~~~g-~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 76 VVITAGAPQKPG-ESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp EEECCCC-----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEEecccccCCC-CCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 999998644322 233578889999999999999998 5565555544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.49 E-value=9.5e-08 Score=70.47 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=56.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
|+|+|+|+ |.+|+.+++.|.+.|++|+++++++... +.+.+. .....+.||.+|++.++++ ++.+|.++-+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~--~~~~~~----~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDIC--KKASAE----IDALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHH----CSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhh--hhhhhh----hhhhhccCcccchhhhhhcChhhhhhhccc
Confidence 58999996 9999999999999999999999876432 122211 1357899999999999887 5788988854
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=2.5e-06 Score=63.42 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=73.0
Q ss_pred cEEEEECCcchhHHHHHHHHHH-CC--CeEEEEEeCCCCcChhhhhhccCC--CCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQ-RG--YTVKATVRDPNSPKTEHLRELDGA--TERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~-~g--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|++|.+|++++..|.. .+ .++..++..+ ....+. ..+... ......+ ....+. +.++++|+|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a-~Dl~h~~~~~~~~~~----~~~~~~-~~~~~aDvv 73 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVA-VDLSHIPTAVKIKGF----SGEDAT-PALEGADVV 73 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHH-HHHHTSCSSCEEEEE----CSSCCH-HHHTTCSEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHH-HHHHCCccccCCcEE----EcCCCc-cccCCCCEE
Confidence 5899999999999999988864 34 6888887643 221111 111111 1112221 112223 367899999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|.+||....... ...++.+.|..-.+.+.+.+.+...-..+|.+|.
T Consensus 74 vitaG~~~k~g~-~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 74 LISAGVRRKPGM-DRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp EECCSCCCCTTC-CGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EECCCccCCCCc-chhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 999997543333 4468899999999999999999833334555554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.39 E-value=1.7e-06 Score=64.67 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=74.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhc-cCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LREL-DGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
++||.|+|+ |++|++++..|+.+|. ++..+++.++....+. +... ......+....+| + +.++++|+
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d---~----~~l~daDv 77 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD---Y----DDCRDADL 77 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC---G----GGTTTCSE
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC---H----HHhcccee
Confidence 478999996 9999999999999884 7888887654322111 1111 1112233333443 2 24678999
Q ss_pred EEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 83 VFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 83 vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
||.+||...... ....+....|+.-.+.+++.+.+. +.+ .+|.+|
T Consensus 78 vvitag~~~~~~-~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvt 123 (148)
T d1ldna1 78 VVICAGANQKPG-ETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT 123 (148)
T ss_dssp EEECCSCCCCTT-TCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred EEEecccccccC-cchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEec
Confidence 999998654333 333678889999999999999998 444 444444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.31 E-value=8.7e-07 Score=68.51 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=56.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
.|+|+|.|| |++|+++++.|.++||+|++++|+..+. ..+....+.......+..+.......+...|.++.+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a-----~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESA-----KKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI 75 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHH-----HHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHH-----HHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence 389999986 9999999999999999999999987433 3333333445566667767677778888889888554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.27 E-value=4.4e-06 Score=61.86 Aligned_cols=110 Identities=20% Similarity=0.167 Sum_probs=70.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhhh--hhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEHL--RELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+||.|+|+ |.+|+.++..|+.++. ++..+++++.....+.+ ..............+ ++ +.++++|+||
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~----~~~~~adivv 73 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DY----SDVKDCDVIV 73 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG----GGGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cH----HHhCCCceEE
Confidence 57999996 9999999999999984 89999988765433221 111111223333322 22 2467899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEe
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~ 128 (322)
-+||...... .......+.|+.-.+.+++.+.+. +.+.++.+
T Consensus 74 itag~~~~~~-~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~iv 115 (142)
T d1y6ja1 74 VTAGANRKPG-ETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILV 115 (142)
T ss_dssp ECCCC-------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEE
T ss_pred EecccccCcC-cchhHHhhHHHHHHHHHHHHhhcc-CCCceEEE
Confidence 9998654332 334678899999999999999997 45544443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.25 E-value=5.3e-06 Score=62.32 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=75.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhh--hhc-cCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHL--REL-DGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~--~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
+.+||.|+|+ |.+|+.++..|...+. ++++++.++........ ... .......... .....+..++++|+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~adi 79 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-----AEYSYEAALTGADC 79 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-----EECSHHHHHTTCSE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEe-----ccCchhhhhcCCCe
Confidence 4579999997 9999999998888884 78888876643222111 000 0001111111 11344667889999
Q ss_pred EEEcccCcccCC----CCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 83 VFHTASPVIFLS----DNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 83 vih~A~~~~~~~----~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
||-+||...... ..........|..-...+++.+.+. +.+.++.+-|
T Consensus 80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivs 130 (154)
T d1pzga1 80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 130 (154)
T ss_dssp EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence 999998643211 1244678889999999999999998 5555555444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=1.4e-06 Score=64.13 Aligned_cols=70 Identities=26% Similarity=0.206 Sum_probs=55.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
|+++|.| .|-+|+++++.|.+.|++|++++.++ +..+++.. .....+.+|.++++.++++ ++++|.||-+
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~-----~~~~~~~~--~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINE-----EKVNAYAS--YATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCH-----HHHHHTTT--TCSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcH-----HHHHHHHH--hCCcceeeecccchhhhccCCccccEEEEE
Confidence 5788997 59999999999999999999998876 33333332 2346788999999999877 7789988744
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.21 E-value=5.8e-06 Score=61.05 Aligned_cols=111 Identities=16% Similarity=0.038 Sum_probs=73.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChh-hhhhcc---CCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTE-HLRELD---GATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
||.|+||+|.+|++++..|..+|. ++..++........+ ....+. ..........+| ++ .++++|+|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~----~~~~aDiV 74 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YE----DTAGSDVV 74 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GG----GGTTCSEE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HH----HhhhcCEE
Confidence 799999999999999999999984 677777532211110 111111 112333433443 33 24689999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccE-EEEec
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR-VVLTS 129 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~i~~S 129 (322)
|-.||..... .....+.++.|..-.+.+.+.+.+. +.+. ++.+|
T Consensus 75 vitaG~~~~~-g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~ivvt 119 (142)
T d1o6za1 75 VITAGIPRQP-GQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTS 119 (142)
T ss_dssp EECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECC
T ss_pred EEeccccccc-CCchhhHHHHHHHHHHHHHHHHHhc-CCCceEEEec
Confidence 9999864332 2345688999999999999999998 4444 44443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.19 E-value=1.9e-06 Score=65.00 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=71.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC----eEEEEEeCCCCcChhhhhhc----c-CCCCcEEEEEccCCCccchHHhhC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY----TVKATVRDPNSPKTEHLREL----D-GATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~~~~----~-~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
.+||.|+||+|++|++++..|.+.+. +.+.+.--..+...+..... . ........+... ....+.++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 79 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT----DDPKVAFK 79 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE----SCHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC----Cchhhhcc
Confidence 46999999999999999999998752 11222111111111111111 1 111223333332 23456788
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
++|+||-+||..... ..+..+.+..|+.-.+.+.+.+.+..... .++.+|
T Consensus 80 ~advViitaG~~~~p-g~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 80 DADYALLVGAAPRKA-GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp TCSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cccEEEeecCcCCCC-CCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 999999999975443 33446788999999999999999863333 454555
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.17 E-value=7.9e-06 Score=60.54 Aligned_cols=111 Identities=14% Similarity=-0.007 Sum_probs=73.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhhh---ccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLRE---LDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|| |.+|+.++..|+..| .++..+++++.......+.. ............. .+++ .++++|+|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~----~~~dadvv 73 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYA----DTANSDIV 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG----GGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHH----HhcCCeEE
Confidence 47999996 999999999999998 58998988775432211110 0000112222221 2222 46789999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEe
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~ 128 (322)
|-+||....... ......+.|..-.+.+++.+.+. +.+.++.+
T Consensus 74 vitag~~~~~g~-~r~~l~~~N~~i~~~i~~~i~~~-~p~aiviv 116 (142)
T d1guza1 74 IITAGLPRKPGM-TREDLLMKNAGIVKEVTDNIMKH-SKNPIIIV 116 (142)
T ss_dssp EECCSCCCCTTC-CHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred EEEEecCCCCCC-chHHHHHHHHHHHHHHHHHhhcc-CCCeEEEE
Confidence 999986433323 34678899999999999999997 44544444
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.16 E-value=1e-05 Score=60.90 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=74.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhcc-CCCCcEEEEEccCCCccchHHhhCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LRELD-GATERLHLFKANLLEEGSFDSAVDGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d 81 (322)
+.+||.|+|+ |.+|+.++..|..+|. ++..++++++....+. +.... ..........+| ++ .++++|
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~~----~~~~ad 90 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---YS----VTANSK 90 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---GG----GGTTCS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---hh----hccccc
Confidence 3579999995 9999999999999995 7888887653332111 11100 111222222222 22 466899
Q ss_pred EEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccE-EEEec
Q 020747 82 GVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR-VVLTS 129 (322)
Q Consensus 82 ~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~i~~S 129 (322)
+||..||...... ....+..+.|+.-.+.++..+.+. +.+. +|.+|
T Consensus 91 iVVitAg~~~~~g-~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvt 137 (160)
T d1i0za1 91 IVVVTAGVRQQEG-ESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVS 137 (160)
T ss_dssp EEEECCSCCCCTT-CCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred EEEEecCCccccC-cchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence 9999999754433 334678899999999999999998 4444 44444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=4.5e-06 Score=61.70 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=73.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhhhh--hccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEHLR--ELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
|||.|+|+ |.+|+.++..|+.++ .++..+++++.....+.+. .............+| ++ .++++|+||
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~----~~~~adivv 72 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YA----DLKGSDVVI 72 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GG----GGTTCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HH----HhcCCCEEE
Confidence 48999996 999999999999887 4788888765332211111 001112233333332 22 467899999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-+||....... ...+.+..|..-.+.+++.+.+. +.+.++.+-|
T Consensus 73 itag~~~~~g~-~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt 116 (140)
T d1a5za1 73 VAAGVPQKPGE-TRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT 116 (140)
T ss_dssp ECCCCCCCSSC-CHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred EecccccCCCc-chhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence 99986543323 33578888999999999999998 5555555433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.09 E-value=8.1e-06 Score=60.64 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=72.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhh--hhh-ccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEH--LRE-LDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+| +|++|+.++..|+.+| .++..+++++.....+. +.. ............+| ++ .++++|+|
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~----~l~~adiV 73 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WA----ALADADVV 73 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GG----GGTTCSEE
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HH----HhccccEE
Confidence 7899999 5999999999999987 47888887654322111 111 11112223333333 33 35789999
Q ss_pred EEcccCcccC---CCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFL---SDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~---~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|-+||..... ......+..+.|..-...+.+.+.+. +.+.++.+-|
T Consensus 74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 9999864321 12233567888999999999999987 5555544443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=98.02 E-value=4.7e-06 Score=63.91 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=71.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-----CeEEEEEeCCCCcCh--hhh-hhcc-CCCCcEEEEEccCCCccchHHhhC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-----YTVKATVRDPNSPKT--EHL-RELD-GATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~--~~~-~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
..||.||||+|.||++++..|++.+ ..+.+...+...... +.+ .++. ...+....+.. ..+..+.++
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~----~~~~~~~~~ 99 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI----GIDPYEVFE 99 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE----ESCHHHHTT
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc----cccchhhcc
Confidence 3589999999999999999999853 223333333222111 111 0111 01122222221 123456788
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCc-cEEEEec
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI-KRVVLTS 129 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~-~~~i~~S 129 (322)
++|+||-.||..... .....+.++.|..-.+.+.+++.+.... -+++.+|
T Consensus 100 ~aDvVvi~ag~~rkp-g~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 100 DVDWALLIGAKPRGP-GMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TCSEEEECCCCCCCT-TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCceEEEeeccCCCC-CCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 999999999875333 3445788999999999999999996332 3455555
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.02 E-value=1.5e-05 Score=58.93 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=73.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.||.|+|+ |.+|++++..|+.+|. ++..+++++.....+. +...............+ +++ .++++|+||
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~~----~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DPE----ICRDADMVV 74 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CGG----GGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CHH----HhhCCcEEE
Confidence 47999996 9999999999999984 7888887764332111 11111111122222221 222 466889999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEec
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~S 129 (322)
-+||...... ....+....|..-.+.+++.+++. +.+.++.+-
T Consensus 75 itaG~~~~~g-~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivv 117 (143)
T d1llda1 75 ITAGPRQKPG-QSRLELVGATVNILKAIMPNLVKV-APNAIYMLI 117 (143)
T ss_dssp ECCCCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred EecccccCCC-CchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEe
Confidence 9999754332 334678899999999999999998 555444443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=1.3e-05 Score=60.34 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=72.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCCCCcChhh--hhhcc-CCCCcEEEEEccCCCccchHHhhCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDPNSPKTEH--LRELD-GATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~--~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
++..||.|+|+ |.+|+.++..|..+|. ++..+++++.....+. +.... ...........| ++ .++++
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~~----~~~~a 88 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---YN----VSANS 88 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---GG----GGTTE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---hh----hhccc
Confidence 34468999995 9999999999999984 7888887653322111 11111 111222222222 32 34688
Q ss_pred CEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccE-EEEec
Q 020747 81 DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR-VVLTS 129 (322)
Q Consensus 81 d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~i~~S 129 (322)
|+||..||....... .....++.|+.-.+.++..+.+. +.+. ++.+|
T Consensus 89 divvitag~~~~~~~-~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvt 136 (159)
T d2ldxa1 89 KLVIITAGARMVSGQ-TRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVT 136 (159)
T ss_dssp EEEEECCSCCCCTTT-CSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECS
T ss_pred cEEEEecccccCCCC-CHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeC
Confidence 999999986543333 33577889999999999999887 4444 44444
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.98 E-value=2e-05 Score=58.19 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=72.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCCCcChhh--hhh-ccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPNSPKTEH--LRE-LDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~--~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
|||.|+|+ |.+|++++..|+.+| .++..++++++....+. +.. ............. .|++ .++++|+|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~~----~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----LLKGSEII 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGG----GGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCHH----HhccccEE
Confidence 58999996 999999999999888 47888887653321111 110 1111111122221 1222 56789999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|-.||..... .....+....|..-...+.+.+.+. +.+.++.+-|
T Consensus 74 vitag~~~~~-g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvt 118 (142)
T d1ojua1 74 VVTAGLARKP-GMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (142)
T ss_dssp EECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred EEeccccCCC-CCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEec
Confidence 9998864333 3344688889999999999999997 5555554444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.96 E-value=7.2e-06 Score=61.67 Aligned_cols=117 Identities=19% Similarity=0.029 Sum_probs=69.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC-----C--eEEEEEeCCCCcChhhhh-hc-cCCCCcEEEEEccCCCccchHHhhC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG-----Y--TVKATVRDPNSPKTEHLR-EL-DGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
.+||.|+||+|.+|++++..|++.+ . ++..++.+......+.+. ++ .........+..- ......++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 78 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIAT----DKEEIAFK 78 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEE----SCHHHHTT
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccC----cccccccC
Confidence 4799999999999999999998754 1 233333322111111110 00 0111222222221 23356788
Q ss_pred CCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 79 GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 79 ~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
++|+||-+||....... ...+.++.|..-.+.+.+.+.+..+.. .+|.+|
T Consensus 79 ~~dvVVitag~~~~~g~-sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 79 DLDVAILVGSMPRRDGM-ERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp TCSEEEECCSCCCCTTC-CTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CceEEEEecccCCCCCC-chhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 99999999986544322 335678999999999999998853433 344555
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.90 E-value=1.9e-05 Score=58.36 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=68.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccC----CCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDG----ATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
+||.|+|+ |.+|+.++..|+.++. ++..++..++....... .+.. .......... .|++ .++++|+|
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~-Dl~~~~~~~~~~~~i~~~--~d~~----~~~~advv 73 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKAL-DLYEASPIEGFDVRVTGT--NNYA----DTANSDVI 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHH-HHHTTHHHHTCCCCEEEE--SCGG----GGTTCSEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHH-HhhccccccCCCCEEEec--CcHH----HhcCCCEE
Confidence 68999995 9999999999998874 88888876643322111 1100 0111111111 1222 35688999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
|-+||..... .....+..+.|..-...+++.+.+. +.+.++.+-|
T Consensus 74 vitag~~~~~-~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 74 VVTSGAPRKP-GMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp EECCSCC----------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred EEeeeccCCc-CcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence 9999865432 2233577889999999999999997 5555555543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.87 E-value=4.6e-06 Score=65.25 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=32.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
|||.|+||+|.+|++|++.|+++||+|++.+|++++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~ 36 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK 36 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 479999999999999999999999999999998644
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.74 E-value=3.3e-05 Score=59.52 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=61.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccC---CCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG---ATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|+|.|+| +|.+|..++..|.++||+|.+.+|++... +.+..... ..+.............+..+.++++|+||-
T Consensus 2 k~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRI--KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI 78 (184)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence 7999999 49999999999999999999999875332 11211110 001111111111122356778899999986
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
+.-. . ....+++.+++......+|..++
T Consensus 79 ~v~~-------~----------~~~~~~~~i~~~l~~~~~iv~~~ 106 (184)
T d1bg6a2 79 VVPA-------I----------HHASIAANIASYISEGQLIILNP 106 (184)
T ss_dssp CSCG-------G----------GHHHHHHHHGGGCCTTCEEEESS
T ss_pred EEch-------h----------HHHHHHHHhhhccCCCCEEEEeC
Confidence 5311 1 12356777776544445555443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.70 E-value=0.00015 Score=53.80 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=72.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhh--hhc-cCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHL--REL-DGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~--~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+||.|+|+ |.+|++++..|..++ .++..+++.+.......+ ... .....+......+ ++ +.++++|+||
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGADVVI 76 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTCSEEE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCCcEEE
Confidence 58999995 999999999888887 478888876643322111 100 0001111222211 22 3457899999
Q ss_pred EcccCcccC----CCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFL----SDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~----~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-+||..... .......+.+.|..-.+.+++.+++. +.+.++.+-|
T Consensus 77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvt 125 (150)
T d1t2da1 77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 125 (150)
T ss_dssp ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 999854321 12234678899999999999999998 5555544433
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.69 E-value=0.00021 Score=51.55 Aligned_cols=94 Identities=18% Similarity=0.060 Sum_probs=64.3
Q ss_pred CCCCCCCCcEEEEECCc---chhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh
Q 020747 1 MMSGEGEEKVVCVTGAS---GFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 1 mm~~~~~~~~ilVtGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
||...+..++|.|.||+ +-.|..+.+.|.+.| ++|+.+..+.... ..+.-+.++.++
T Consensus 1 ~L~~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-------------------~G~~~y~sl~dl 61 (129)
T d2csua1 1 MLDYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-------------------QGVKAYKSVKDI 61 (129)
T ss_dssp CCCTTTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-------------------TTEECBSSTTSC
T ss_pred ChhHhCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-------------------CCeEeecchhhc
Confidence 78888888999999998 999999999998766 6888774332111 111122333334
Q ss_pred hCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 77 VDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 77 ~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
-..+|.++-+.. -..+..+++.|.+. |++.++.+|+.
T Consensus 62 p~~vDlvvi~vp-----------------~~~~~~~~~~~~~~-g~~~~vi~s~G 98 (129)
T d2csua1 62 PDEIDLAIIVVP-----------------KRFVKDTLIQCGEK-GVKGVVIITAG 98 (129)
T ss_dssp SSCCSEEEECSC-----------------HHHHHHHHHHHHHH-TCCEEEECCCS
T ss_pred CCCCceEEEecC-----------------hHHhHHHHHHHHHc-CCCEEEEeccc
Confidence 456898875531 12244678888887 89998888875
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=9.7e-05 Score=58.73 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=53.3
Q ss_pred CCCCcEEEEECC----------------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC
Q 020747 5 EGEEKVVCVTGA----------------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68 (322)
Q Consensus 5 ~~~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (322)
++++++||||+| ||-.|.+|++++..+|++|+.+.-..+... ...+..+.. .
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~----------p~~~~~~~~--~ 70 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPT----------PPFVKRVDV--M 70 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCC----------CTTEEEEEC--C
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCc----------cccccccee--h
Confidence 578899999987 799999999999999999998876543221 123444433 2
Q ss_pred Ccc----chHHhhCCCCEEEEcccCc
Q 020747 69 EEG----SFDSAVDGCDGVFHTASPV 90 (322)
Q Consensus 69 ~~~----~~~~~~~~~d~vih~A~~~ 90 (322)
..+ .+...++.+|++|++||..
T Consensus 71 t~~~m~~~~~~~~~~~D~~i~aAAvs 96 (223)
T d1u7za_ 71 TALEMEAAVNASVQQQNIFIGCAAVA 96 (223)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred hhHHHHHHHHhhhccceeEeeeechh
Confidence 222 2334556899999999964
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00011 Score=51.40 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=54.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC--CCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD--GCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 84 (322)
..||.|.| +|++|+-++....+.|++|++++.+++.... .+ --.++.+|..|.+.+.++.. ++|+|-
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~-~v--------a~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAM-HV--------AHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGG-GG--------SSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchh-hc--------CCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 46899999 8999999999999999999999987655432 11 12678899999999988875 579884
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=2.7e-05 Score=57.65 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=27.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC----CeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG----YTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~ 43 (322)
|+|.|.||||++|+.+++.|+++. .+++.+.++.+
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s 40 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL 40 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence 789999999999999999888763 24555555443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=8.4e-05 Score=56.15 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
|||+|+|+ |.+|+.++..|.+.||+|.+++|++...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 58999996 9999999999999999999999987544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=8.7e-05 Score=55.40 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=56.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~A 87 (322)
.+|+|.|. |-+|+.+++.|.++|++|++++.++.... ....... ..++.++.||.+|++.++++ ++++|.||-+.
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~-~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDI-KQLEQRL--GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHH-HHHHHHH--CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHH-HHHHHhh--cCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 47899995 89999999999999999999987653221 1222221 24688999999999988766 56889998553
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.54 E-value=5.8e-05 Score=58.17 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=50.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-----CCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-----DGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~d 81 (322)
++.+|+|+||+|.+|+..++-....|.+|+++++++++. +.+++.. .. +. .|-.+.+..+.+. +++|
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~--~~~~~~G---a~-~v--i~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI--AYLKQIG---FD-AA--FNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTT---CS-EE--EETTSCSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHH--HHHHhhh---hh-hh--cccccccHHHHHHHHhhcCCCc
Confidence 468999999999999999999999999999999875332 2333322 11 11 2333443333322 2689
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+|+++.|
T Consensus 101 ~v~D~vG 107 (182)
T d1v3va2 101 CYFDNVG 107 (182)
T ss_dssp EEEESSC
T ss_pred eeEEecC
Confidence 9999875
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.48 E-value=4.9e-05 Score=56.73 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.+++|.|+||.|.+|+.+++.|.++||+|.+.+|+.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 357999999999999999999999999999998765
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.43 E-value=0.00031 Score=52.96 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=30.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|||.|+| .|.+|+.+++.|.+.||+|++.+|++.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~ 34 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQS 34 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCch
Confidence 4799997 699999999999999999999988753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.43 E-value=9e-05 Score=56.48 Aligned_cols=74 Identities=22% Similarity=0.162 Sum_probs=50.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
++.+|+|+||+|-+|...+..+...|.+|+++++++++. +..+++. .. .. .|..+........+++|+||.+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~--~~~~~lG---a~-~~--i~~~~~~~~~~~~~g~D~v~d~ 98 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL--ALPLALG---AE-EA--ATYAEVPERAKAWGGLDLVLEV 98 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS--HHHHHTT---CS-EE--EEGGGHHHHHHHTTSEEEEEEC
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccc--ccccccc---cc-ee--eehhhhhhhhhccccccccccc
Confidence 568999999999999999999999999999999876433 3333332 11 11 1333322222334579999997
Q ss_pred cc
Q 020747 87 AS 88 (322)
Q Consensus 87 A~ 88 (322)
.|
T Consensus 99 ~G 100 (171)
T d1iz0a2 99 RG 100 (171)
T ss_dssp SC
T ss_pred cc
Confidence 65
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00012 Score=56.36 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh-hh-hhhccCCCCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT-EH-LRELDGATERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
.++++|+|.|+ |..|++++..|.+.|. ++++..|+.+.... .. .+.+.. .........|+.+.+.+...+..+|+
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~di 93 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-NTDCVVTVTDLADQQAFAEALASADI 93 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH-HSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh-hcCcceEeeecccccchhhhhcccce
Confidence 46789999995 8899999999999996 67788887655422 11 111111 11234556788888888888889999
Q ss_pred EEEcccC
Q 020747 83 VFHTASP 89 (322)
Q Consensus 83 vih~A~~ 89 (322)
|||+...
T Consensus 94 iIN~Tp~ 100 (182)
T d1vi2a1 94 LTNGTKV 100 (182)
T ss_dssp EEECSST
T ss_pred eccccCC
Confidence 9999753
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=5.5e-05 Score=49.13 Aligned_cols=38 Identities=39% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
++.+|+|+||+|.+|+..+..+...|++|+++.+++++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k 68 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST 68 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 45789999999999999999989999999999987644
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.0001 Score=54.40 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=26.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC---eEEEEEeC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY---TVKATVRD 41 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~ 41 (322)
++|.|.||||++|+++++.|.+++| ++..+..+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 6899999999999999999987654 56655443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00014 Score=55.53 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=50.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh---hC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA---VD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~d 81 (322)
++.+|||+||+|.+|...++.+...|.+|+++++++.+. +..+++. .. .. .|.++.+..+++ .. ++|
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~--~~~~~~G---a~-~v--i~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ--KIVLQNG---AH-EV--FNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH--HHHHHTT---CS-EE--EETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccc--ccccccC---cc-cc--cccccccHHHHhhhhhccCCce
Confidence 467999999999999999999999999999998764321 2333322 11 22 355554433332 22 579
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+|+.+.|
T Consensus 100 ~v~d~~g 106 (174)
T d1yb5a2 100 IIIEMLA 106 (174)
T ss_dssp EEEESCH
T ss_pred EEeeccc
Confidence 9998865
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.35 E-value=0.00013 Score=57.18 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=30.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|+|.|.| .||+|..++..|+++||+|++++.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 4799996 99999999999999999999998754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.33 E-value=2.5e-05 Score=60.71 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC---CCcEEEEEccCCCccchHHhhCCCCE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA---TERLHLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
|+|+||.|.| +|-.|++++..|.++|++|.+.+|++... +.+.+...+ .+.+.+ .-++.-..+++.+++++|+
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~--~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~ 80 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEV--RLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEI 80 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHH--HHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSC
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHH--HHHhhccccccccccccc-ccccccchhhhhccCCCCE
Confidence 4557899999 89999999999999999999998865322 111111100 011110 1122223467888999999
Q ss_pred EEEc
Q 020747 83 VFHT 86 (322)
Q Consensus 83 vih~ 86 (322)
||-+
T Consensus 81 iiia 84 (189)
T d1n1ea2 81 ILFV 84 (189)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9854
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.25 E-value=0.00013 Score=55.94 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=26.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATV 39 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 39 (322)
++|.|.|||||.|++|++.|.++. +++..+.
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 689999999999999999999984 5766553
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.21 E-value=0.00018 Score=55.29 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=50.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh---h--CCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA---V--DGCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~--~~~d 81 (322)
++.+|||+||+|.+|...+..+...|.+|+++++++++. +.+.+. +.. .. .|..+++..+.+ . +++|
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~--~~l~~~---Ga~-~v--i~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR--EMLSRL---GVE-YV--GDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH--HHHHTT---CCS-EE--EETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccc--cccccc---ccc-cc--ccCCccCHHHHHHHHhCCCCEE
Confidence 467999999999999999999999999999998765322 333332 222 12 344444333333 2 3689
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+||.+.|
T Consensus 97 ~v~d~~g 103 (183)
T d1pqwa_ 97 VVLNSLA 103 (183)
T ss_dssp EEEECCC
T ss_pred EEEeccc
Confidence 9999875
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.21 E-value=0.00024 Score=52.23 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG 32 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g 32 (322)
|||.|.||||++|++|++.|+++.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~ 24 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEER 24 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT
T ss_pred CEEEEECCccHHHHHHHHHHHhcC
Confidence 479999999999999999988753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.19 E-value=0.00022 Score=53.41 Aligned_cols=72 Identities=24% Similarity=0.262 Sum_probs=51.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
+++++|+|+|+ |-+|+.+++.|...|. ++.+..|+..+.. ....++. +...+.+++.+.+.++|+||
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~-~l~~~~~----------~~~~~~~~~~~~l~~~Divi 89 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAV-ELARDLG----------GEAVRFDELVDHLARSDVVV 89 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHH-HHHHHHT----------CEECCGGGHHHHHHTCSEEE
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHH-HHHHhhh----------cccccchhHHHHhccCCEEE
Confidence 46789999996 9999999999999997 5777777643321 1111111 11235567888889999999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
.+.+.
T Consensus 90 ~atss 94 (159)
T d1gpja2 90 SATAA 94 (159)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 88753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=8.9e-05 Score=56.23 Aligned_cols=75 Identities=24% Similarity=0.403 Sum_probs=48.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
+.+|||+||+|.+|.+.++.....|.+|+++++++++. +.+.++.. ......-|... +.+... -+++|+|+.+
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~--~~~~~lGa---d~vi~~~~~~~-~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA--DYLKQLGA---SEVISREDVYD-GTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH--HHHHHHTC---SEEEEHHHHCS-SCCCSSCCCCEEEEEES
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH--HHHHhhcc---cceEeccchhc-hhhhcccCCCceEEEec
Confidence 45799999999999999988888899999999987554 34444432 12221112111 111111 1357999888
Q ss_pred cc
Q 020747 87 AS 88 (322)
Q Consensus 87 A~ 88 (322)
.+
T Consensus 98 vg 99 (167)
T d1tt7a2 98 VG 99 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 65
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.12 E-value=0.00022 Score=54.31 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=26.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEe
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVR 40 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r 40 (322)
+||.|.||||++|++|++.|.+.. .++..+..
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s 34 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 34 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence 689999999999999999999875 46665543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00013 Score=55.91 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh---hC--CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA---VD--GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~---~~--~~d 81 (322)
++.+|+|+||+|.+|..++......|.+|+++++++.+. +..+++.. . + ..|.++++..+++ -. ++|
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~--~~~~~lGa---~-~--vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA--QSALKAGA---W-Q--VINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH--HHHHHHTC---S-E--EEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHH--HHHHhcCC---e-E--EEECCCCCHHHHHHHHhCCCCeE
Confidence 467999999999999999999999999999999886543 33333321 1 2 2355554433333 22 579
Q ss_pred EEEEccc
Q 020747 82 GVFHTAS 88 (322)
Q Consensus 82 ~vih~A~ 88 (322)
+|+.+.+
T Consensus 100 ~v~d~~g 106 (179)
T d1qora2 100 VVYDSVG 106 (179)
T ss_dssp EEEECSC
T ss_pred EEEeCcc
Confidence 9998875
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.09 E-value=0.00015 Score=55.75 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=48.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCC-CcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGAT-ERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|+|.|.| +|-.|++++..|.++|++|.+..|..+......+.....+. -....-..++.-..+++++++++|+||.+.
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 5899999 79999999999999999999988754321111111111100 001111112233456788999999998653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.07 E-value=0.00027 Score=53.20 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=46.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
++|.++| .|.+|+++++.|+++||+|.+.+|++... +.+.... ........++++.+|+|+-+.
T Consensus 2 ~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~--~~~~~~~------------~~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 2 KQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAV--DGLVAAG------------ASAARSARDAVQGADVVISML 65 (162)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHH--HHHHHTT------------CEECSSHHHHHTSCSEEEECC
T ss_pred CEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhh--hhhhhhh------------ccccchhhhhccccCeeeecc
Confidence 6899998 89999999999999999999998875432 1222111 111134566788899888664
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.07 E-value=0.00026 Score=54.04 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=58.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCc-cchHHhh--CCCCEEE
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-GSFDSAV--DGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~--~~~d~vi 84 (322)
+.+|||+||+|.+|+..++-....|.+|+++.+++.+. +..+++. ... .+ |-.+. ++..... +++|+||
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~--~~~~~lG---a~~-vi--~~~~~~~~~~~~~~~~gvD~vi 103 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH--DYLRVLG---AKE-VL--AREDVMAERIRPLDKQRWAAAV 103 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH--HHHHHTT---CSE-EE--ECC---------CCSCCEEEEE
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH--HHHHhcc---cce-ee--ecchhHHHHHHHhhccCcCEEE
Confidence 56899999999999999999989999999999887654 3333332 111 12 21111 1111222 2689999
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.+.|- ..+ ...++.++. -++++.++..
T Consensus 104 d~vgg------~~~-----------~~~l~~l~~---~Griv~~G~~ 130 (176)
T d1xa0a2 104 DPVGG------RTL-----------ATVLSRMRY---GGAVAVSGLT 130 (176)
T ss_dssp ECSTT------TTH-----------HHHHHTEEE---EEEEEECSCC
T ss_pred EcCCc------hhH-----------HHHHHHhCC---CceEEEeecc
Confidence 98763 111 133444443 2588888876
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.98 E-value=0.0018 Score=49.31 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|-||+.+++.|..-|.+|++.+|.+.+.. ..-.++++++++.+|+|+.
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~--------------------~~~~~~l~ell~~sDiv~~ 98 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGP--------------------WRFTNSLEEALREARAAVC 98 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSS--------------------SCCBSCSHHHHTTCSEEEE
T ss_pred ccCceEEEec-cccccccceeeeeccccccccccccccccc--------------------eeeeechhhhhhccchhhc
Confidence 5679999999 889999999999999999999988654321 1123467889999999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 99 ~~p 101 (181)
T d1qp8a1 99 ALP 101 (181)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.98 E-value=0.00078 Score=51.60 Aligned_cols=34 Identities=35% Similarity=0.609 Sum_probs=28.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRG-YTVKATV 39 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~ 39 (322)
++..||.|.||||+.|+.|++.|.++. .++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 456799999999999999999999876 4665554
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.94 E-value=0.00027 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY 33 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~ 33 (322)
=+|.|.||||++|++|++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 3799999999999999999988864
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.90 E-value=0.00044 Score=51.87 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=45.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|||.|+| .|.+|+.+++.|+++||+|++.+|+++.. +.+.+. . ... ....+++++++|+||-+-
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~--~~~~~~---~--~~~-------~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAI--ADVIAA---G--AET-------ASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHH--HHHHHT---T--CEE-------CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchh--HHHHHh---h--hhh-------cccHHHHHhCCCeEEEEc
Confidence 4799998 89999999999999999999998876433 222211 1 111 134566777899998664
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00078 Score=50.82 Aligned_cols=74 Identities=20% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC-CccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL-EEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~d~vih 85 (322)
++.+|+|+|+ |.+|...+..+...|.+|+++++++.+. +..+++.. . ..+ |.. +.+..++..++.|+++.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~--~~a~~lGa---~-~~i--~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR--EDAMKMGA---D-HYI--ATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH--HHHHHHTC---S-EEE--EGGGTSCHHHHSCSCEEEEEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHH--HHhhccCC---c-EEe--eccchHHHHHhhhcccceEEE
Confidence 4679999986 9999999988888899999999977554 33333321 1 222 222 33344555567899999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+.+.
T Consensus 98 ~~~~ 101 (168)
T d1piwa2 98 CASS 101 (168)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.84 E-value=0.00055 Score=50.79 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=44.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|||.|+| .|.+|+.+++.|+++||+|++.++++++......... .+. +..+++++.+|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~------------~~~--~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV------------GVT--ETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH------------TCE--ECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc------------ccc--ccHHHHHhhcCeEEEEe
Confidence 4799997 7999999999999999999888776544321111111 111 13456788899998664
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.83 E-value=0.0023 Score=44.65 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=62.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.++++|+|.| +|-+|..-++.|++.|.+|++++...++. +..+.. ..++++...+..+ ..+++++.|+.
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~~----~~~~~~-~~~i~~~~~~~~~-----~dl~~~~lv~~ 78 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIPQ----FTVWAN-EGMLTLVEGPFDE-----TLLDSCWLAIA 78 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCHH----HHHHHT-TTSCEEEESSCCG-----GGGTTCSEEEE
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCChH----HHHHHh-cCCceeeccCCCH-----HHhCCCcEEee
Confidence 5689999999 78899999999999999999887654332 111211 2456777665543 23567788874
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
+.+ ++ ++ ...+.+.|++. + .+|++.+.
T Consensus 79 at~-------d~-----~~----n~~i~~~a~~~-~--ilVNv~D~ 105 (113)
T d1pjqa1 79 ATD-------DD-----TV----NQRVSDAAESR-R--IFCNVVDA 105 (113)
T ss_dssp CCS-------CH-----HH----HHHHHHHHHHT-T--CEEEETTC
T ss_pred cCC-------CH-----HH----HHHHHHHHHHc-C--CEEEeCCC
Confidence 431 11 11 12566677765 4 46776653
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.00046 Score=52.65 Aligned_cols=37 Identities=41% Similarity=0.410 Sum_probs=33.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
.+|||+||+|.+|+..++.....|.+|++++|++.+.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~ 69 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH
Confidence 4899999999999999999999999999999876543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00076 Score=51.02 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=47.5
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.++|+|+|.| +|..+++++..|.+.|.+|+++.|+.++.. .+.+.......+..+ +..+ . ....+|+|||
T Consensus 16 ~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~--~l~~~~~~~~~~~~~--~~~~---~--~~~~~dliIN 85 (170)
T d1nyta1 16 RPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAE--ELAKLFAHTGSIQAL--SMDE---L--EGHEFDLIIN 85 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHH--HHHHHTGGGSSEEEC--CSGG---G--TTCCCSEEEE
T ss_pred CCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHH--HHHHHHhhccccccc--cccc---c--cccccceeec
Confidence 4679999999 588899999999999999888888764432 222211111122222 2211 1 1246899999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 86 ~Tp~ 89 (170)
T d1nyta1 86 ATSS 89 (170)
T ss_dssp CCSC
T ss_pred cccc
Confidence 8753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0008 Score=50.74 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=52.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
.+.+|+|.|+ |.+|...+..+...|.+++++++++++. +..+++.. . . ..|..+.+......+++|++|.+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~--~~a~~lGa---d-~--~i~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR--EAAKALGA---D-E--VVNSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH--HHHHHHTC---S-E--EEETTCHHHHHTTTTCEEEEEEC
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH--HHHhccCC---c-E--EEECchhhHHHHhcCCCceeeee
Confidence 4679999986 8899999998888999999988876443 33333321 1 1 23555555555566789999999
Q ss_pred ccC
Q 020747 87 ASP 89 (322)
Q Consensus 87 A~~ 89 (322)
.|.
T Consensus 101 ~g~ 103 (168)
T d1uufa2 101 VAA 103 (168)
T ss_dssp CSS
T ss_pred eec
Confidence 863
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.74 E-value=0.0007 Score=48.63 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=50.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh-hCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA-VDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~vih~ 86 (322)
|+|+|.| -|-+|+.+++.| +|++|.+++.++... +.+. ..++.++.||.++++.++++ +++++.+|-+
T Consensus 1 kHivI~G-~g~~g~~l~~~L--~~~~i~vi~~d~~~~--~~~~-----~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~ 69 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLREL--RGSEVFVLAEDENVR--KKVL-----RSGANFVHGDPTRVSDLEKANVRGARAVIVN 69 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTS--CGGGEEEEESCTTHH--HHHH-----HTTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHH--cCCCCEEEEcchHHH--HHHH-----hcCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence 5788998 588899999999 467788887765432 2221 23578999999999888865 5688888854
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0018 Score=43.45 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.+++|+|+|.|. |--|..+++.|.+.|++|++.+.+......+.+. .....+.+... +..+.++|.||
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~------~~~~~~~~~~~-----~~~~~~~d~vi 69 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP------EAVERHTGSLN-----DEWLMAADLIV 69 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSC------TTSCEEESBCC-----HHHHHHCSEEE
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHh------hccceeecccc-----hhhhccCCEEE
Confidence 367899999996 7789999999999999999999876543322221 12233334321 23455779999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
-.-|.
T Consensus 70 ~SPGi 74 (93)
T d2jfga1 70 ASPGI 74 (93)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 76654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0012 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++|.|.|| |.+|+.++..++..|++|++.++++.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 89999995 99999999999999999999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.59 E-value=0.0016 Score=48.98 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCC--ccchHHhh-----CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE--EGSFDSAV-----DG 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~-----~~ 79 (322)
.+.+|+|+| +|.+|...+..+...|.+|+++++++.+. +..+++ +... .+..|-.+ ..++.+.+ .+
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~--~~a~~~---ga~~-~~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRL--EVAKNC---GADV-TLVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHT---TCSE-EEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHH--HHHHHc---CCcE-EEeccccccccchhhhhhhcccccC
Confidence 357899997 78999999999999999999999876432 222222 1222 22233222 22222222 36
Q ss_pred CCEEEEcccC
Q 020747 80 CDGVFHTASP 89 (322)
Q Consensus 80 ~d~vih~A~~ 89 (322)
+|+||.++|.
T Consensus 99 ~D~vid~~g~ 108 (170)
T d1e3ja2 99 PNVTIDCSGN 108 (170)
T ss_dssp CSEEEECSCC
T ss_pred CceeeecCCC
Confidence 8999999863
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.0016 Score=49.69 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 44 (322)
++.+|+|+|+ |.+|...+..+...|. +|+++++++.+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~ 65 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNR 65 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccc
Confidence 4689999996 8999999999999997 79999886643
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.51 E-value=0.0012 Score=51.03 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=49.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|.||+.+++.|..-|.+|++.++....... .+.....+++++++.+|+|+.
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-----------------~~~~~~~~l~~~l~~sDii~~ 102 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELE-----------------KKGYYVDSLDDLYKQADVISL 102 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-----------------HTTCBCSCHHHHHHHCSEEEE
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccc-----------------cceeeeccccccccccccccc
Confidence 4579999999 9999999999999999999988765432110 011233568888999998887
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 103 ~~pl 106 (197)
T d1j4aa1 103 HVPD 106 (197)
T ss_dssp CSCC
T ss_pred cCCc
Confidence 6643
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.50 E-value=0.00099 Score=49.34 Aligned_cols=65 Identities=20% Similarity=0.111 Sum_probs=44.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
|||.++| +|.+|+++++.|++.|++|++.+|+..+. +.+.+..+ +.-..+.+.+++++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~--~~l~~~~g-----------~~~~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERS--KEIAEQLA-----------LPYAMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHH--HHHHHHHT-----------CCBCSSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhH--Hhhccccc-----------eeeechhhhhhhccceeeeec
Confidence 4799997 99999999999999999999888765332 22211111 111124566788999988553
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.0023 Score=48.28 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.++++|+|.| +|..|++++..|.+.+.+|+++.|+.++.. .+.+.......+.....|-. ....+|+|||
T Consensus 16 ~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~--~l~~~~~~~~~~~~~~~~~~-------~~~~~diiIN 85 (171)
T d1p77a1 16 RPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTK--ELAERFQPYGNIQAVSMDSI-------PLQTYDLVIN 85 (171)
T ss_dssp CTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHH--HHHHHHGGGSCEEEEEGGGC-------CCSCCSEEEE
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHH--HHHHHHhhccccchhhhccc-------cccccceeee
Confidence 4678999998 688899999999998889999999864432 22221111223444444321 2357899999
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 86 ~tp~ 89 (171)
T d1p77a1 86 ATSA 89 (171)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.46 E-value=0.002 Score=51.58 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=31.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.++|+|+| +|..|...+.+|.++|++|.++.|..
T Consensus 6 ~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLG-SGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 37899999 89999999999999999999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.34 E-value=0.0028 Score=47.64 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=28.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 42 (322)
|+|+|+| .|.+|+.+++.|.+.|+ +|++.+|++
T Consensus 2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 6899998 79999999999999996 677777654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.34 E-value=0.003 Score=44.65 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=32.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.++++|.| +|++|-+++..|.+.|.+|+++.+.+.-
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~~ 65 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPRL 65 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCeEEEEC-cchhHHHHHHHhhcccceEEEEeecccc
Confidence 47899998 8999999999999999999999987643
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.20 E-value=0.0019 Score=48.96 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=48.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
.+|-++| .|.+|+.+++.|+++||+|++.+|++++.. .+.+........ .+ ....+++..++..+|.++-+.
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~--~l~~~~~~~~~~---~~-a~~~~~~~~~~~~~~~ii~~~ 74 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVD--DFLANEAKGTKV---LG-AHSLEEMVSKLKKPRRIILLV 74 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHH--HHHHTTTTTSSC---EE-CSSHHHHHHHBCSSCEEEECS
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHH--HHHHhccccccc---cc-hhhhhhhhhhhcccceEEEec
Confidence 5799999 799999999999999999999999875432 121111000000 01 224455666777889888664
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.17 E-value=0.013 Score=39.23 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=47.8
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
-+.|+|.+.|..|--=++||+.|.++|++|.+-|+..++.. +.+.+ ..+....++- ++ .++++|.||.
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~-~~L~~-----~Gi~v~~g~~--~~----~i~~~d~vV~ 73 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT-QRLAQ-----AGAKIYIGHA--EE----HIEGASVVVV 73 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH-HHHHH-----TTCEEEESCC--GG----GGTTCSEEEE
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh-hHHHH-----CCCeEEECCc--cc----cCCCCCEEEE
Confidence 34689999985554448899999999999999998754332 23322 1244444432 11 3467899998
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
..|.
T Consensus 74 S~AI 77 (96)
T d1p3da1 74 SSAI 77 (96)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 8765
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0065 Score=46.44 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=48.9
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|.||+.+++.|..-|.+|+..++....... . ....+.++++++.+|+|+.
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----------~--------~~~~~~l~ell~~sDii~i 102 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG----------N--------ATQVQHLSDLLNMSDVVSL 102 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT----------T--------CEECSCHHHHHHHCSEEEE
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh----------h--------hhhhhhHHHHHhhccceee
Confidence 4578999997 9999999999999999999999876433211 0 0122467888899999887
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
++..
T Consensus 103 ~~pl 106 (188)
T d1sc6a1 103 HVPE 106 (188)
T ss_dssp CCCS
T ss_pred cccC
Confidence 6644
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.15 E-value=0.0043 Score=43.92 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
+.++|+|.| +|++|.+++..|.+.|.+|+++.+.+.
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecCc
Confidence 457999998 899999999999999999999988753
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0085 Score=44.51 Aligned_cols=97 Identities=25% Similarity=0.296 Sum_probs=56.5
Q ss_pred cEEEEECCcchhHHHHHHHHHHC-CCeEEE-EEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR-GYTVKA-TVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 86 (322)
+||.|.|++|-.|+++++.+.+. +.++.+ ++|..++.......++..... .++.-..+++.+++.+|+||.+
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~------~~~~~~~~~~~~~~~~DViIDF 78 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGK------TGVTVQSSLDAVKDDFDVFIDF 78 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSC------CSCCEESCSTTTTTSCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhcccc------CCceeeccHHHHhcccceEEEe
Confidence 68999999999999999999886 567654 445433322111111111111 1111122344566789999977
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
.- -.++...++.|.+. ++ .+ .++|+
T Consensus 79 s~-----------------p~~~~~~~~~a~~~-~~-~~-ViGTT 103 (162)
T d1diha1 79 TR-----------------PEGTLNHLAFCRQH-GK-GM-VIGTT 103 (162)
T ss_dssp SC-----------------HHHHHHHHHHHHHT-TC-EE-EECCC
T ss_pred cc-----------------HHHHHHHHHHHHhc-cc-ee-EEecC
Confidence 42 12345677888886 54 33 44554
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.003 Score=46.44 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=32.4
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.+++|+|+|+|| |.+|..-++.|++.|.+|++++...
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 467899999995 8999999999999999999886543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.11 E-value=0.0013 Score=50.44 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=43.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchH---Hhh-CCCCEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFD---SAV-DGCDGVF 84 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~-~~~d~vi 84 (322)
.+|||+||+|.+|+..++.....|.++++...+.++.......++. .. ...|.++++..+ ++- +++|+|+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---ad---~vi~~~~~~~~~~~~~~~~~GvDvv~ 105 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---FD---AAVNYKTGNVAEQLREACPGGVDVYF 105 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---CS---EEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---ce---EEeeccchhHHHHHHHHhccCceEEE
Confidence 6799999999999999999888997655443332111111111221 11 223444433322 221 2689999
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
.+.|
T Consensus 106 D~vG 109 (187)
T d1vj1a2 106 DNVG 109 (187)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 8875
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0058 Score=45.33 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=46.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+|+|+|.|.+..+|+-|+..|.++|..|+...... ..+....+++|+||
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t----------------------------~~l~~~~~~ADivI 85 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT----------------------------KNLRHHVENADLLI 85 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEE
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccccc----------------------------chhHHHHhhhhHhh
Confidence 45689999999999999999999999999988664321 23445667789999
Q ss_pred EcccCc
Q 020747 85 HTASPV 90 (322)
Q Consensus 85 h~A~~~ 90 (322)
.++|..
T Consensus 86 ~a~G~p 91 (166)
T d1b0aa1 86 VAVGKP 91 (166)
T ss_dssp ECSCCT
T ss_pred hhccCc
Confidence 998854
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0067 Score=45.48 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=48.1
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-----CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-----DGC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 80 (322)
++.+|+|+|+ |.+|...+..+...|. +|+++++++.+. +..+++. .. ..+..+-.++.+..+.+ .++
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl--~~a~~~G---a~-~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRL--SKAKEIG---AD-LVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH--HHHHHTT---CS-EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHH--HHHHHhC---Cc-ccccccccccccccccccccCCCCc
Confidence 3578999985 9999999999999998 788888775432 2222221 11 23333333433333333 268
Q ss_pred CEEEEccc
Q 020747 81 DGVFHTAS 88 (322)
Q Consensus 81 d~vih~A~ 88 (322)
|+||.+.|
T Consensus 99 Dvvid~~G 106 (171)
T d1pl8a2 99 EVTIECTG 106 (171)
T ss_dssp SEEEECSC
T ss_pred eEEEeccC
Confidence 99999886
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.07 E-value=0.0057 Score=47.21 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..+++|.|.| .|-||+.+++.|..-|.+|++.++....... ..+ +..+++.+++.+|+|+.
T Consensus 43 l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----------~~~--------~~~~l~~l~~~~D~v~~ 103 (199)
T d1dxya1 43 LGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH----------PDF--------DYVSLEDLFKQSDVIDL 103 (199)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC----------TTC--------EECCHHHHHHHCSEEEE
T ss_pred ccceeeeeee-cccccccccccccccceeeeccCCccchhhh----------cch--------hHHHHHHHHHhccccee
Confidence 4468999999 9999999999999999999999876543211 111 23467888889999886
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 104 ~~p 106 (199)
T d1dxya1 104 HVP 106 (199)
T ss_dssp CCC
T ss_pred eec
Confidence 653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.98 E-value=0.0063 Score=46.69 Aligned_cols=68 Identities=12% Similarity=-0.015 Sum_probs=49.6
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..++++.|.| .|-||+.+++.|..-|.+|++.++......... .++....+++++++.+|+|+.
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~ 110 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTL 110 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEE
T ss_pred eeCceEEEec-cccccccceeeeeccccceeeccCcccccchhh---------------hccccccchhhccccCCEEEE
Confidence 5678999998 999999999999999999999887654321100 011223567888888998876
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
....
T Consensus 111 ~~pl 114 (193)
T d1mx3a1 111 HCGL 114 (193)
T ss_dssp CCCC
T ss_pred eecc
Confidence 6543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.98 E-value=0.0052 Score=42.97 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++++|.| +|++|.+++..|.+.|.+|+++.|...
T Consensus 22 p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 37999999 899999999999999999999988764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.86 E-value=0.004 Score=46.74 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=48.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~ 80 (322)
++.+|+|+|++|.+|...+..+...|. +|++.++++.+. +..+++. .. ..+ |.++.+..++..+ ++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~--~~~~~~G---a~-~~i--~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV--EAAKRAG---AD-YVI--NASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH--HHHHHHT---CS-EEE--ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhH--HHHHHcC---Cc-eee--ccCCcCHHHHHHHHhhcccc
Confidence 457899999999999999999998884 788887765322 2233321 11 223 3334333333332 57
Q ss_pred CEEEEcccC
Q 020747 81 DGVFHTASP 89 (322)
Q Consensus 81 d~vih~A~~ 89 (322)
|+||.+++-
T Consensus 99 d~vid~~g~ 107 (170)
T d1jvba2 99 DAVIDLNNS 107 (170)
T ss_dssp EEEEESCCC
T ss_pred hhhhccccc
Confidence 999998863
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0055 Score=43.28 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=31.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++++|.| +|+||-+++..|.+.|.+|+++.|.+.
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccc
Confidence 47999999 899999999999999999999988664
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.017 Score=43.04 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=46.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
...+|+|+|.|.+..+|+-|+..|+++|..|+...... ..+....++.|+||
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t----------------------------~~l~~~~~~aDivi 87 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT----------------------------AHLDEEVNKGDILV 87 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEE
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEeccc----------------------------ccHHHHHhhccchh
Confidence 35689999999999999999999999999988764322 22345667789999
Q ss_pred EcccCc
Q 020747 85 HTASPV 90 (322)
Q Consensus 85 h~A~~~ 90 (322)
..+|..
T Consensus 88 ~a~G~~ 93 (170)
T d1a4ia1 88 VATGQP 93 (170)
T ss_dssp ECCCCT
T ss_pred hccccc
Confidence 888753
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0067 Score=44.87 Aligned_cols=68 Identities=25% Similarity=0.147 Sum_probs=49.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++.+|+++|+| .|.||+.+++.|...|.+|++..+++-+ .++.. .|--....+++++...|+||
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~----al~A~-----------~dG~~v~~~~~a~~~adivv 84 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPIN----ALQAA-----------MEGYEVTTMDEACQEGNIFV 84 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHH-----------HTTCEECCHHHHTTTCSEEE
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccch----hHHhh-----------cCceEeeehhhhhhhccEEE
Confidence 45689999999 9999999999999999999999876522 22221 11112235677888899998
Q ss_pred Eccc
Q 020747 85 HTAS 88 (322)
Q Consensus 85 h~A~ 88 (322)
-+.|
T Consensus 85 taTG 88 (163)
T d1li4a1 85 TTTG 88 (163)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 7765
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.0083 Score=42.66 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=46.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d~ 82 (322)
|||.|.|++|-.|+.|.+.+.++|+++++. +++... .+. ... +..|++.|+...+.++ ++-.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~-------~~~--~~D---VvIDFS~p~~~~~~l~~~~~~~~p~ 68 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE-------ELD--SPD---VVIDFSSPEALPKTVDLCKKYRAGL 68 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE-------ECS--CCS---EEEECSCGGGHHHHHHHHHHHTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH-------Hhc--cCC---EEEEecCHHHHHHHHHHHHhcCCCE
Confidence 479999999999999999999999997654 322111 111 112 4569999998776665 5566
Q ss_pred EEEccc
Q 020747 83 VFHTAS 88 (322)
Q Consensus 83 vih~A~ 88 (322)
|+-..|
T Consensus 69 ViGTTG 74 (128)
T d1vm6a3 69 VLGTTA 74 (128)
T ss_dssp EECCCS
T ss_pred EEEcCC
Confidence 664444
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.006 Score=42.61 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++|+|.| +|++|.+++..|.+.|.+|.++.|.+.
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence 37899999 899999999999999999999988753
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.70 E-value=0.01 Score=45.32 Aligned_cols=69 Identities=16% Similarity=0.025 Sum_probs=49.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..++++.|.| .|.||+.+++.|..-|.+|++.++........... .....++++++++.+|+|+.
T Consensus 45 l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~--------------~~~~~~~l~~ll~~sD~v~l 109 (191)
T d1gdha1 45 LDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY--------------QATFHDSLDSLLSVSQFFSL 109 (191)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH--------------TCEECSSHHHHHHHCSEEEE
T ss_pred ecccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcc--------------cccccCCHHHHHhhCCeEEe
Confidence 3579999999 99999999999999999999888765433211110 11123568889999999876
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 110 ~~pl 113 (191)
T d1gdha1 110 NAPS 113 (191)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.69 E-value=0.006 Score=42.70 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=31.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++|+|.| .|++|-+++..|.+.|.+|+++.|...
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhccccceeeehhcc
Confidence 47899999 899999999999999999999988753
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.69 E-value=0.0082 Score=42.09 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=32.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++++|.| +|+||-+++..|.+.|.+|+++.|...
T Consensus 22 p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 47899999 899999999999999999999988764
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.66 E-value=0.0063 Score=42.90 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=30.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++++|.| .|++|-+++..|.+.|++|+++.|.+.
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEEC-CcHHHHHHHHHhhcccceEEEEecccc
Confidence 6888888 899999999999999999999987653
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.65 E-value=0.0044 Score=46.87 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSP 45 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 45 (322)
|+|-|+| .|.+|+++++.|+++||+|.+.+|++++.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~ 37 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKS 37 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 5799998 99999999999999999999999876543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.65 E-value=0.0086 Score=44.88 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=41.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
+..||.|.| +|.+|+..++.|.+. +.+++++..+...... ...+ . ...+...+.+++|+|+.
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~--~-----~~~~~~~~~~~~D~Vvi 64 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPV--F-----DVADVDKHADDVDVLFL 64 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCE--E-----EGGGGGGTTTTCSEEEE
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------cccc--c-----cchhhhhhccccceEEE
Confidence 346899999 799999999999986 5787766544322211 0111 1 11233445568999987
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 65 ~tp 67 (170)
T d1f06a1 65 CMG 67 (170)
T ss_dssp CSC
T ss_pred eCC
Confidence 764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.62 E-value=0.0094 Score=44.36 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=31.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
++.+|+|.|+ |.+|...+..+...|.+|+++++++.+
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~ 63 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAK 63 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhH
Confidence 4678999885 999999999888999999999887543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.60 E-value=0.0076 Score=42.68 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=31.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++++|.| +|+||-+++..|.+.|.+|+++.|+..
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 37999999 899999999999999999999998754
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.57 E-value=0.0085 Score=42.92 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=32.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.++|+|.| +|++|-+++..|.+.|.+|.++.+....
T Consensus 35 ~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 35 DNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAARV 70 (133)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCEEEEEC-CchHHHHHHHHHHhhCcceeeeeecccc
Confidence 58999999 8999999999999999999999887643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.52 E-value=0.015 Score=44.29 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..++++.|.| .|-||+++++.|..-|.+|...+|...+... ... ..+....+++.+++.+|+|+-
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~~------------~~~~~~~~l~~~l~~sD~v~~ 106 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESV--EKE------------LNLTWHATREDMYPVCDVVTL 106 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHH--HHH------------HTCEECSSHHHHGGGCSEEEE
T ss_pred ccccceeecc-ccccchhhhhhhhccCceEEEEeeccccccc--ccc------------ccccccCCHHHHHHhccchhh
Confidence 4578999999 9999999999999999999999886544321 111 011233567788888998876
Q ss_pred ccc
Q 020747 86 TAS 88 (322)
Q Consensus 86 ~A~ 88 (322)
+..
T Consensus 107 ~~p 109 (188)
T d2naca1 107 NCP 109 (188)
T ss_dssp CSC
T ss_pred ccc
Confidence 553
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.45 E-value=0.04 Score=39.51 Aligned_cols=86 Identities=21% Similarity=0.097 Sum_probs=56.5
Q ss_pred CcEEEEECCc---chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 8 EKVVCVTGAS---GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 8 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
.|+|.|.|++ +-.|..+++.|.+.||+|+.+..+... + ....-+..+.++-..+|.|+
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~---------------i----~G~~~~~sl~dlp~~iD~v~ 79 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE---------------V----LGRKCYPSVLDIPDKIEVVD 79 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---------------E----TTEECBSSGGGCSSCCSEEE
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc---------------c----CCCcccccccccCccceEEE
Confidence 4799999998 789999999999999998876432211 1 11112344455555688877
Q ss_pred EcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 85 HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 85 h~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-+.. -..+..+++.|.+. |++.+++.++
T Consensus 80 i~vp-----------------~~~~~~~~~e~~~~-g~k~v~~~~G 107 (139)
T d2d59a1 80 LFVK-----------------PKLTMEYVEQAIKK-GAKVVWFQYN 107 (139)
T ss_dssp ECSC-----------------HHHHHHHHHHHHHH-TCSEEEECTT
T ss_pred EEeC-----------------HHHHHHHHHHHHHh-CCCEEEEecc
Confidence 5431 22345678888887 8887665443
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.44 E-value=0.0093 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=30.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
.++++|.| +|+||-+++..|.+.|.+|+++.|+
T Consensus 20 P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 36899999 8999999999999999999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0072 Score=38.71 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=30.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
|+|.|.| +|++|+-++..-.+.|++|++++-..+
T Consensus 2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 8999999 899999999999999999999976543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.42 E-value=0.0048 Score=46.55 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=46.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhhC--CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAVD--GC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~ 80 (322)
++.+|+|.|+ |.+|...+..+...|. +|+++++++.+. +..+++. . ... .|..+.+. +.++.. ++
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~--~~a~~lG---a-~~~--i~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICV--EAAKFYG---A-TDI--LNYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHH--HHHHHHT---C-SEE--ECGGGSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhH--HHHHhhC---c-ccc--ccccchhHHHHHHHHhhccCc
Confidence 4678999985 9999999998888996 688888765332 2223221 1 122 23333322 333332 58
Q ss_pred CEEEEcccC
Q 020747 81 DGVFHTASP 89 (322)
Q Consensus 81 d~vih~A~~ 89 (322)
|+||.++|.
T Consensus 98 D~vid~~g~ 106 (174)
T d1jqba2 98 DRVIMAGGG 106 (174)
T ss_dssp EEEEECSSC
T ss_pred ceEEEccCC
Confidence 999999863
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.011 Score=44.98 Aligned_cols=67 Identities=19% Similarity=0.097 Sum_probs=47.7
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
..++++.|.| .|.||+++++.|..-|.+|++.++...+... ... . ....+++++++.+|+|+-
T Consensus 42 l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~---~~~-----~--------~~~~~l~ell~~sDiv~~ 104 (184)
T d1ygya1 42 IFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARA---AQL-----G--------IELLSLDDLLARADFISV 104 (184)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHH---HHH-----T--------CEECCHHHHHHHCSEEEE
T ss_pred ccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHH---hhc-----C--------ceeccHHHHHhhCCEEEE
Confidence 4568888888 8999999999999999999988776433211 110 0 122467788999999886
Q ss_pred cccC
Q 020747 86 TASP 89 (322)
Q Consensus 86 ~A~~ 89 (322)
+...
T Consensus 105 ~~Pl 108 (184)
T d1ygya1 105 HLPK 108 (184)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.34 E-value=0.0088 Score=45.65 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=31.1
Q ss_pred CcEEEE-ECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCV-TGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilV-tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
+.+++| +||+|.+|.+.++-....|.+|++++|+.+.
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~ 66 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 66 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence 456666 6999999999999888899999999987654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.34 E-value=0.056 Score=37.39 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=54.3
Q ss_pred cEEEEECCc---chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGAS---GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
|+|.|.|++ +-.|..+++.|++.||+|+.+..+... + ..+.-+.++.++-+.+|.++-
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~---------------i----~G~~~y~sl~~lp~~~D~vvi 62 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE---------------I----EGLKCYRSVRELPKDVDVIVF 62 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE---------------E----TTEECBSSGGGSCTTCCEEEE
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc---------------c----cCccccccchhccccceEEEE
Confidence 789999988 779999999999999998876322110 1 122233445555567898875
Q ss_pred cccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEe
Q 020747 86 TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128 (322)
Q Consensus 86 ~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~ 128 (322)
+.. -..+..+++.|.+. |++.+++-
T Consensus 63 ~vp-----------------~~~~~~~l~~~~~~-g~k~v~~~ 87 (116)
T d1y81a1 63 VVP-----------------PKVGLQVAKEAVEA-GFKKLWFQ 87 (116)
T ss_dssp CSC-----------------HHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EeC-----------------HHHHHHHHHHHHhc-CCceEEec
Confidence 431 12234677777776 88876553
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.34 E-value=0.012 Score=40.92 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.4
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++++|.| +|++|-+++..|.+.|++|+++.|.+.
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeecc
Confidence 47899998 899999999999999999999988654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.27 E-value=0.0096 Score=49.43 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++|+|+|+| +|+-|...|..|.++|++|.++.++..
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 358999999 899999999999999999999987653
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.25 E-value=0.007 Score=46.17 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++|.|.|+ |.+|+.++..++..|++|++.++++.
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 68999996 99999999999999999999998754
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.19 E-value=0.015 Score=47.33 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r 40 (322)
..++++|+|-| .|.+|+++++.|.+.|.+|++++-
T Consensus 33 ~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 33 GFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 46789999999 799999999999999999988764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.018 Score=43.14 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=64.5
Q ss_pred CcEEEEECCcchhHHH--HHHHHHHC----CCeEEEEEeCCCCcChh--hhhh-ccCCCCcEEEEEccCCCccchHHhhC
Q 020747 8 EKVVCVTGASGFVASW--LVKLLLQR----GYTVKATVRDPNSPKTE--HLRE-LDGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~--~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
.|||.|+|| |.+|.. ++..|+.. +.++..+++++.+.... .+.. ........+.. ...+.+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~-----~~td~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE-----KTMNLDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE-----EESCHHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEE-----EeCChhhccc
Confidence 368999995 888864 44455543 45899998876443210 1111 01111222222 2235677889
Q ss_pred CCCEEEEcccCcccC------------------CCCC-------cchhhhHHHHHHHHHHHHHhhcCCcc-EEEEec
Q 020747 79 GCDGVFHTASPVIFL------------------SDNP-------QADIVDPAVMGTLNVLRSCAKVHSIK-RVVLTS 129 (322)
Q Consensus 79 ~~d~vih~A~~~~~~------------------~~~~-------~~~~~~~N~~~~~~l~~~~~~~~~~~-~~i~~S 129 (322)
++|+||+.++..... .... ......-|+.-.+.+++.+++. ..+ .+|.+|
T Consensus 76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~-~p~a~~i~~T 151 (171)
T d1obba1 76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKL-SPKAWYLQAA 151 (171)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHH-CcCeEEEEEC
Confidence 999999988642110 0000 0011245888999999999987 444 444444
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.04 E-value=0.017 Score=40.34 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=31.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++|+|.| +|++|.+++..|.+.|.+|.++.|.+.
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence 57899988 899999999999999999999988753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.96 E-value=0.0049 Score=45.79 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=54.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A 87 (322)
.-+|+|.| .|-.|..-++.....|.+|.+++++.... +.++.... ..++.. ..+.+.+++.++++|+||.++
T Consensus 32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l--~~l~~~~~--~~~~~~---~~~~~~l~~~~~~aDivI~aa 103 (168)
T d1pjca1 32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERL--SYLETLFG--SRVELL---YSNSAEIETAVAEADLLIGAV 103 (168)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHHHHHG--GGSEEE---ECCHHHHHHHHHTCSEEEECC
T ss_pred CcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHH--HHHHHhhc--ccceee---hhhhhhHHHhhccCcEEEEee
Confidence 46899999 89999999999999999999999876433 22222221 222322 345677888999999999887
Q ss_pred cC
Q 020747 88 SP 89 (322)
Q Consensus 88 ~~ 89 (322)
-.
T Consensus 104 li 105 (168)
T d1pjca1 104 LV 105 (168)
T ss_dssp CC
T ss_pred ec
Confidence 54
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.96 E-value=0.023 Score=42.56 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=45.7
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-----CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-----DGC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~~ 80 (322)
++.+|+|.|+ |.+|...+..+...| .+|+++++++.+. +...+.. ....+...|-. +.+++.. .++
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~--~~a~~~G---a~~~i~~~~~~--~~~~~~~~~~~~~G~ 99 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKF--AKAKEVG---ATECVNPQDYK--KPIQEVLTEMSNGGV 99 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHTT---CSEEECGGGCS--SCHHHHHHHHTTSCB
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHH--HHHHHhC---CeeEEecCCch--hHHHHHHHHHhcCCC
Confidence 4679999998 568999999999988 5788888776543 2222221 11111112222 2233222 268
Q ss_pred CEEEEcccC
Q 020747 81 DGVFHTASP 89 (322)
Q Consensus 81 d~vih~A~~ 89 (322)
|++|.+.|.
T Consensus 100 D~vid~~G~ 108 (176)
T d2jhfa2 100 DFSFEVIGR 108 (176)
T ss_dssp SEEEECSCC
T ss_pred CEEEecCCc
Confidence 999998764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.92 E-value=0.037 Score=36.31 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=46.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEEccc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFHTAS 88 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 88 (322)
|||.++|-.|-==+.|++.|.++|++|.+-|+..++.. +.++.. + +++..+. +++ -++++|.||...|
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t-~~L~~~---G--i~i~~gh--~~~----~i~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERT-AYLRKL---G--IPIFVPH--SAD----NWYDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHHHT---T--CCEESSC--CTT----SCCCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhH-HHHHHC---C--CeEEeee--ccc----ccCCCCEEEEecC
Confidence 68999987666557899999999999999998754322 233332 2 3444332 222 2357899998877
Q ss_pred C
Q 020747 89 P 89 (322)
Q Consensus 89 ~ 89 (322)
.
T Consensus 70 I 70 (89)
T d1j6ua1 70 V 70 (89)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.047 Score=38.25 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=51.2
Q ss_pred CCcEEEEECC----------cchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHh
Q 020747 7 EEKVVCVTGA----------SGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSA 76 (322)
Q Consensus 7 ~~~~ilVtGa----------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (322)
..|+|+|.|+ --+-+.+.++.|.+.|++++.+..++.....+. +-...+...-...+.+.+.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~--------d~aD~lYfePlt~e~v~~I 77 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP--------EMADATYIEPIHWEVVRKI 77 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG--------GGSSEEECSCCCHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh--------hhcceeeeecCCHHHHHHH
Confidence 3489999998 457899999999999999988876665533211 1123344555566777777
Q ss_pred hC--CCCEEEEcc
Q 020747 77 VD--GCDGVFHTA 87 (322)
Q Consensus 77 ~~--~~d~vih~A 87 (322)
++ ++|.|+-..
T Consensus 78 i~~E~pd~il~~~ 90 (127)
T d1a9xa3 78 IEKERPDAVLPTM 90 (127)
T ss_dssp HHHHCCSEEECSS
T ss_pred HHHhCcCCeEEEe
Confidence 76 789987443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.85 E-value=0.012 Score=43.22 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=30.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNS 44 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~ 44 (322)
|+|.++| +|.+|+++++.|++.| ++|++.+|+++.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~ 36 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEK 36 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHH
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhH
Confidence 4799998 5999999999999887 899998887643
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.78 E-value=0.021 Score=38.97 Aligned_cols=39 Identities=18% Similarity=-0.089 Sum_probs=32.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.+++|+|+|.| +|.-|.-++.+|+..+.+|+...|+...
T Consensus 29 ~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~~ 67 (107)
T d2gv8a2 29 LFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGGG 67 (107)
T ss_dssp GGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred hcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence 36789999999 7899999999999988887777666543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.74 E-value=0.041 Score=41.21 Aligned_cols=78 Identities=18% Similarity=0.072 Sum_probs=50.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCc--------EEEE-------EccC--CCcc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATER--------LHLF-------KANL--LEEG 71 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--------~~~~-------~~Dl--~~~~ 71 (322)
-+|+|.| .|-.|.+-++-....|.+|.++|.+.... +.++++....-. .+.. .-+. .+.+
T Consensus 30 a~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~--~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 30 ARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATK--EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTH--HHHHHTTCEECCC-----------------------CCHHH
T ss_pred cEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHH--HHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 4899999 79999999999999999999999987654 333333210000 0000 0001 1233
Q ss_pred chHHhhCCCCEEEEcccC
Q 020747 72 SFDSAVDGCDGVFHTASP 89 (322)
Q Consensus 72 ~~~~~~~~~d~vih~A~~ 89 (322)
.+.+.++++|.||-.|-.
T Consensus 107 ~l~~~l~~aDlVI~tali 124 (183)
T d1l7da1 107 AVLKELVKTDIAITTALI 124 (183)
T ss_dssp HHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHhhhhheeeeec
Confidence 456677899999977744
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.72 E-value=0.023 Score=42.78 Aligned_cols=81 Identities=10% Similarity=0.145 Sum_probs=46.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhcc----CCCCcE-EEEEccCCCccchHHhhCCCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELD----GATERL-HLFKANLLEEGSFDSAVDGCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~-~~~~~Dl~~~~~~~~~~~~~d~ 82 (322)
-||.|-| .|.||+.++|.|.+++ .+|+++....+......+.... ...... .+-...+.-...+..+.+++|+
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDi 80 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI 80 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCE
Confidence 5899998 8999999999999875 6888775433222111111110 000000 0000112223345666678999
Q ss_pred EEEcccCc
Q 020747 83 VFHTASPV 90 (322)
Q Consensus 83 vih~A~~~ 90 (322)
||-|.|.+
T Consensus 81 ViecTG~f 88 (178)
T d1b7go1 81 VVDTTPNG 88 (178)
T ss_dssp EEECCSTT
T ss_pred EEECCCCc
Confidence 99998753
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.66 E-value=0.013 Score=41.28 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=32.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.++++|.| +|+||-+++..|.+.|.+|+++.|++..
T Consensus 25 p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 47899999 8999999999999999999999887654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.65 E-value=0.016 Score=40.91 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=31.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.++++|.| +|+||-+++..|.+.|.+|+++.+.+.
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 47999999 899999999999999999999988653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.62 E-value=0.023 Score=42.48 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=44.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCC-CccchHHhh-----CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLL-EEGSFDSAV-----DG 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~-----~~ 79 (322)
++.+|+|.|+ |.+|...+..+...|. .|++.++++.+. +..+++.. . ..+ |.. +.+.+.+.+ .+
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~--~~ak~lGa---~-~~i--~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKF--ARAKEFGA---T-ECI--NPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH--HHHHHHTC---S-EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHH--HHHHHhCC---c-EEE--eCCchhhHHHHHHHHHcCCC
Confidence 4679999997 5689999999999996 566665554332 33333321 1 222 222 223333333 36
Q ss_pred CCEEEEcccC
Q 020747 80 CDGVFHTASP 89 (322)
Q Consensus 80 ~d~vih~A~~ 89 (322)
+|+||.+.|.
T Consensus 99 ~D~vid~~G~ 108 (176)
T d2fzwa2 99 VDYSFECIGN 108 (176)
T ss_dssp BSEEEECSCC
T ss_pred CcEeeecCCC
Confidence 8999998863
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.49 E-value=0.015 Score=46.74 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=29.5
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.|+|+| +|..|..++.+|+++|++|+++.+..
T Consensus 6 DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIG-GGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 399999 89999999999999999999998864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.39 E-value=0.021 Score=42.30 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=31.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
++.+|+|.|+ |-+|...+..+...|.+|+++++++.+
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r 63 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEK 63 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHH
Confidence 4578999874 999999999999999999999876543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.028 Score=42.28 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
+.|+|+|+| +|..|-..+..|.++||+|+++.+.+..
T Consensus 42 ~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 468999999 8999999999999999999999987543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.049 Score=46.94 Aligned_cols=77 Identities=17% Similarity=0.098 Sum_probs=49.8
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---hhhhh---------------cc--CCCCcEEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---EHLRE---------------LD--GATERLHLFKAN 66 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---~~~~~---------------~~--~~~~~~~~~~~D 66 (322)
..||||.|+ |.+|+++++.|+..|. ++.++|.+.=+... +.+-. +. ....++..+..+
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 468999995 6699999999999996 68888765422211 10100 00 012345666666
Q ss_pred CCCccchHHhhCCCCEEEEcc
Q 020747 67 LLEEGSFDSAVDGCDGVFHTA 87 (322)
Q Consensus 67 l~~~~~~~~~~~~~d~vih~A 87 (322)
+.+.. ..++++.|+||.+.
T Consensus 116 i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 116 IQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp GGGBC--HHHHTTCSEEEECC
T ss_pred ccchH--HHHHHhcchheecc
Confidence 66543 46788999999664
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.25 E-value=0.022 Score=43.15 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=31.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 44 (322)
++||+|+| +|..|-..+.+|.+.|+ +|+++.|+...
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 47999999 89999999999999998 59888887543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.23 E-value=0.03 Score=44.42 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
..+||+|+| +|.-|..++..|.++|++|+++.|+..
T Consensus 3 ~~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 347999999 899999999999999999999988653
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.17 E-value=0.0039 Score=46.87 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=62.2
Q ss_pred cEEEEECC-cchhHHHHHHHHHHCC----CeEEEEEeCCCCcChhhhhhc-----cCCCCcEEEEEccCCCccchHHhhC
Q 020747 9 KVVCVTGA-SGFVASWLVKLLLQRG----YTVKATVRDPNSPKTEHLREL-----DGATERLHLFKANLLEEGSFDSAVD 78 (322)
Q Consensus 9 ~~ilVtGa-tG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (322)
+||.|+|| +.+.+..++..++... -++..++.+++....+.+... .......... ...+..+.++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~td~~~al~ 76 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH-----LTLDRRRALD 76 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE-----EESCHHHHHT
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee-----ecCCchhhcC
Confidence 57999996 4455566655555432 377788876543222211110 0001111211 2234466788
Q ss_pred CCCEEEEcccCccc--CCCCC-----------------cchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 79 GCDGVFHTASPVIF--LSDNP-----------------QADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 79 ~~d~vih~A~~~~~--~~~~~-----------------~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
++|+||..|+.... +..+. -.....-|+.-.+.+++.+.+. +...++.+-|
T Consensus 77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vt 146 (169)
T d1s6ya1 77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFT 146 (169)
T ss_dssp TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeC
Confidence 99999999985421 00000 0011245888888888888887 4555444433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.14 E-value=0.048 Score=40.73 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=46.4
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh-----CC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV-----DG 79 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~ 79 (322)
-++.+|+|+| +|.||...+..+...|. +|++.++++.+. +..+++.. ...+...-.+ +..+... .+
T Consensus 27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~--~~a~~~Ga----~~~i~~~~~~-~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKF--PKAKALGA----TDCLNPRELD-KPVQDVITELTAGG 98 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHTTC----SEEECGGGCS-SCHHHHHHHHHTSC
T ss_pred CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHH--HHHHHhCC----CcccCCccch-hhhhhhHhhhhcCC
Confidence 3467999997 59999999999999997 577777665432 22222211 1222221112 2222222 37
Q ss_pred CCEEEEcccC
Q 020747 80 CDGVFHTASP 89 (322)
Q Consensus 80 ~d~vih~A~~ 89 (322)
+|+||.++|.
T Consensus 99 ~d~vie~~G~ 108 (174)
T d1e3ia2 99 VDYSLDCAGT 108 (174)
T ss_dssp BSEEEESSCC
T ss_pred CcEEEEeccc
Confidence 8999999863
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.075 Score=36.72 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred CcEEEEECCc----------chhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhh
Q 020747 8 EKVVCVTGAS----------GFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAV 77 (322)
Q Consensus 8 ~~~ilVtGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (322)
.++|+|.|+. -+-+.+.++.|.+.|++++.+..++.....+. .-...+...-...+.+...+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~--------d~aD~lYfeplt~e~v~~Ii 75 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDY--------DTSDRLYFEPVTLEDVLEIV 75 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTST--------TSSSEEECCCCSHHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcCh--------hhcCceEEccCCHHHHHHHH
Confidence 4799999973 37899999999999999998876665443211 11223344444556666665
Q ss_pred C--CCCEEEEc
Q 020747 78 D--GCDGVFHT 86 (322)
Q Consensus 78 ~--~~d~vih~ 86 (322)
+ ++|.|+-.
T Consensus 76 ~~E~p~~ii~~ 86 (121)
T d1a9xa4 76 RIEKPKGVIVQ 86 (121)
T ss_dssp HHHCCSEEECS
T ss_pred HHhCCCEEEee
Confidence 4 78888733
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.95 E-value=0.027 Score=41.89 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 44 (322)
++++|+|.| +|..|++++..|.+.|. +|.++.|+.++
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~k 53 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKT 53 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence 568999999 59999999999999996 68888887643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.87 E-value=0.039 Score=42.29 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
+.++++|.|-| .|-+|+++++.|.+.|.+|++.+.+
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d 59 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTD 59 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecch
Confidence 46789999998 9999999999999999999887654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.85 E-value=0.027 Score=45.55 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=30.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
.|||+|+| +|.-|-..+.+|.+.|++|+++.++.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 38999999 89999999999999999999998754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.83 E-value=0.056 Score=40.45 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=47.2
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc----hHHhh--CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS----FDSAV--DG 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~----~~~~~--~~ 79 (322)
++.+|+|+| .|.+|...+..+...| .+|+++++++.+. +..+++. .. ..+ |..+.+. +.+.. .+
T Consensus 29 ~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl--~~Ak~~G---A~-~~i--n~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 29 PGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKF--EKAMAVG---AT-ECI--SPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHHT---CS-EEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHH--HHHHhcC---Cc-EEE--CccccchHHHHHHHHhcccc
Confidence 467899998 5999999999999999 5799998876543 2222222 11 222 2222221 22222 37
Q ss_pred CCEEEEcccC
Q 020747 80 CDGVFHTASP 89 (322)
Q Consensus 80 ~d~vih~A~~ 89 (322)
+|++|.+.+.
T Consensus 100 ~d~vi~~~g~ 109 (176)
T d1d1ta2 100 VGYTFEVIGH 109 (176)
T ss_dssp CCEEEECSCC
T ss_pred ceEEEEeCCc
Confidence 9999988764
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.74 E-value=0.028 Score=42.92 Aligned_cols=32 Identities=31% Similarity=0.283 Sum_probs=27.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|||.|+| .||+|..++..| ++|++|+++|-++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 5799997 999999999766 5799999998765
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.042 Score=40.87 Aligned_cols=81 Identities=20% Similarity=0.051 Sum_probs=50.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccC--CCccchHHhhCCCCE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL--LEEGSFDSAVDGCDG 82 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~~~~~~~~~~~~~d~ 82 (322)
..++|+|+|.|-+.-+|+-++..|+++|..|+....+...... .-.... -......|+ -..+.++.....+|+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~lk~~~~~aDI 100 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLK----LNKHHVEDLGEYSEDLLKKCSLDSDV 100 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSS----CCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-ccccee----eeeeccccccccchhHHhhccccCCE
Confidence 4678999999999999999999999999998766433211000 000000 000111222 123346667778999
Q ss_pred EEEcccCc
Q 020747 83 VFHTASPV 90 (322)
Q Consensus 83 vih~A~~~ 90 (322)
||..+|..
T Consensus 101 vIsavG~p 108 (171)
T d1edza1 101 VITGVPSE 108 (171)
T ss_dssp EEECCCCT
T ss_pred EEEccCCC
Confidence 99888753
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.70 E-value=0.041 Score=40.84 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=43.0
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC-----CCeEEEEEeCCCCcCh--hhhhhcc-CCCCcEEEEEccCCCccchHHhhCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR-----GYTVKATVRDPNSPKT--EHLRELD-GATERLHLFKANLLEEGSFDSAVDG 79 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~-----g~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (322)
..||.|+||.+.-...++..|+.. +-+++.++.++.+... ..+.... ........... .+.++++++
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~~ 77 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFTD 77 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHSS
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccCC
Confidence 468999998554333455555543 2378888877644321 1111110 00111222221 245678899
Q ss_pred CCEEEEcccCc
Q 020747 80 CDGVFHTASPV 90 (322)
Q Consensus 80 ~d~vih~A~~~ 90 (322)
+|+||..|+..
T Consensus 78 AD~Vvitag~~ 88 (167)
T d1u8xx1 78 VDFVMAHIRVG 88 (167)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEECCCcC
Confidence 99999999864
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.65 E-value=0.046 Score=40.77 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=30.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
+++|+|.| +|++|-+++..|.+.|.+|.++.+...+
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence 57899998 8999999999999999988777665543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.54 E-value=0.15 Score=36.15 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred EEEEECCcchhHHHHHHHHHHC-CCeEEEE-EeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CCCE
Q 020747 10 VVCVTGASGFVASWLVKLLLQR-GYTVKAT-VRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GCDG 82 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~d~ 82 (322)
||.|.|++|-.|+.+++.+.+. ++++.+. ++.. ... ........ +..|++.|+.....++ ++-.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~~~-----~~~~~~~D---vvIDFS~p~~~~~~~~~~~~~~~~~ 71 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-PLS-----LLTDGNTE---VVIDFTHPDVVMGNLEFLIDNGIHA 71 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-CTH-----HHHTTTCS---EEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-chh-----hhccccCC---EEEEcccHHHHHHHHHHHHhcCCCE
Confidence 6899999999999999998775 5776644 4322 111 11111112 4679999987765554 5667
Q ss_pred EEEccc
Q 020747 83 VFHTAS 88 (322)
Q Consensus 83 vih~A~ 88 (322)
|+-..|
T Consensus 72 ViGTTG 77 (135)
T d1yl7a1 72 VVGTTG 77 (135)
T ss_dssp EECCCC
T ss_pred EEeccc
Confidence 664433
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.33 E-value=0.031 Score=45.05 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.7
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|+|+|+| +|.-|-..+.+|.++|++|+++.++.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4699999 59999999999999999999997764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.18 E-value=0.063 Score=39.98 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEE-EEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHH---hhC-CCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVK-ATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDS---AVD-GCD 81 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~---~~~-~~d 81 (322)
++.+|+|.|+ |.+|...+..+...|.+++ +.++++.+. +..+++.. .+. .|..+.+..++ +-. ++|
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~--~~a~~~Ga----~~~--i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRL--ELAKQLGA----THV--INSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHH--HHHHHHTC----SEE--EETTTSCHHHHHHHHTTSCEE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHH--HHHHHcCC----eEE--EeCCCcCHHHHHHHHcCCCCc
Confidence 4678999996 9999999998888887655 445443221 23333221 123 34444333332 222 589
Q ss_pred EEEEcccC
Q 020747 82 GVFHTASP 89 (322)
Q Consensus 82 ~vih~A~~ 89 (322)
+||.+.|.
T Consensus 99 ~vid~~G~ 106 (174)
T d1f8fa2 99 FALESTGS 106 (174)
T ss_dssp EEEECSCC
T ss_pred EEEEcCCc
Confidence 99998763
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.04 E-value=0.047 Score=40.44 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=29.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC--eEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY--TVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~ 42 (322)
+|||+|.| .|++|-.++..|.+.++ +|+++.+.+
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 58999999 89999999999999885 677776654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.85 E-value=0.18 Score=36.75 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=50.0
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEE
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVF 84 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 84 (322)
++.+|+++|.| =|.+|+-+++.|...|.+|+++.+++-. .++.. .+.++. ..++++++..|+||
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~----alqA~---mdGf~v--------~~~~~a~~~aDi~v 83 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPIC----AIQAV---MEGFNV--------VTLDEIVDKGDFFI 83 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHH----HHHHH---TTTCEE--------CCHHHHTTTCSEEE
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchh----hHHHH---hcCCcc--------CchhHccccCcEEE
Confidence 45689999999 8999999999999999999998765421 22221 122222 34567888889999
Q ss_pred EcccC
Q 020747 85 HTASP 89 (322)
Q Consensus 85 h~A~~ 89 (322)
-+.|-
T Consensus 84 TaTGn 88 (163)
T d1v8ba1 84 TCTGN 88 (163)
T ss_dssp ECCSS
T ss_pred EcCCC
Confidence 77663
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.72 E-value=0.091 Score=39.10 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 44 (322)
++.+|+|.|+ |.+|...+..+...|. +|+++++++.+
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~k 64 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDK 64 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHH
Confidence 4679999985 9999999999999996 68888876544
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.59 E-value=0.05 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
..|+|+|+| +|.-|-..+.+|.++|++|.++.+..
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 347999999 89999999999999999999997654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.55 E-value=0.064 Score=39.95 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=47.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEc-----------cCCCccchHHh
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKA-----------NLLEEGSFDSA 76 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------Dl~~~~~~~~~ 76 (322)
+||.|-| .|-||+.+++.|.+++ .+|+++.-..+......+... + +..+.. .+.....+..+
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL---G--IPVYAASEEFIPRFEKEGFEVAGTLNDL 76 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT---T--CCEEESSGGGHHHHHHHTCCCSCBHHHH
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhc---C--ceeecccccceeeecccCccccchhhhh
Confidence 7999999 7999999999999865 677766432222111122111 1 111111 12233456677
Q ss_pred hCCCCEEEEcccCc
Q 020747 77 VDGCDGVFHTASPV 90 (322)
Q Consensus 77 ~~~~d~vih~A~~~ 90 (322)
.+++|+|+-|.|.+
T Consensus 77 ~~~vDvViEcTG~f 90 (172)
T d2czca2 77 LEKVDIIVDATPGG 90 (172)
T ss_dssp HTTCSEEEECCSTT
T ss_pred hccCCEEEECCCCC
Confidence 78999999998864
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.54 E-value=0.053 Score=42.24 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=29.4
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
-|+|+| +|.-|...+.+|+++|++|.++.++.
T Consensus 7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 379999 99999999999999999999998865
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.42 E-value=0.1 Score=37.90 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=29.7
Q ss_pred CcEEEEE-CCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 8 EKVVCVT-GASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVt-GatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
.+.++|. .+.||||.+++..|.+.|.+|+++.+...
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3556655 35799999999999999999999998653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.34 E-value=0.075 Score=40.44 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=45.3
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc---hHHhhC--CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS---FDSAVD--GC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~---~~~~~~--~~ 80 (322)
.+.+|+|.|+ |-+|...+..+...|. +|+++++++.+. +..+++ + ...+ .|-.+.+. +.++.. ++
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl--~~a~~~---G--a~~~-~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL--AHAKAQ---G--FEIA-DLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH--HHHHHT---T--CEEE-ETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhh--Hhhhhc---c--ccEE-EeCCCcCHHHHHHHHhCCCCc
Confidence 4679999985 9999888888877776 688887765332 222222 1 2222 23333222 233333 58
Q ss_pred CEEEEcccC
Q 020747 81 DGVFHTASP 89 (322)
Q Consensus 81 d~vih~A~~ 89 (322)
|++|.+.|.
T Consensus 96 D~vid~vG~ 104 (195)
T d1kola2 96 DCAVDAVGF 104 (195)
T ss_dssp EEEEECCCT
T ss_pred EEEEECccc
Confidence 999999874
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.17 E-value=0.048 Score=44.56 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=30.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
..|+|+| +|+-|..+|++|++.|++|.++.++..
T Consensus 2 ~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVG-SGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 5799999 899999999999999999999977653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=92.16 E-value=0.073 Score=36.73 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred CcEEEEECCcchhHHHHHHHHHH---CCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQ---RGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~ 43 (322)
.++++|.|| |++|-+++..|.+ +|.+|+++.|.+.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 379999995 9999999976665 4568999988653
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.12 E-value=0.1 Score=37.73 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=29.0
Q ss_pred cEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 42 (322)
|+|.|.|+||-||...+.-+.+. .++|.+++-+.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~ 37 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK 37 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 89999999999999999988876 47888886543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.00 E-value=0.1 Score=41.16 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=31.3
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r 40 (322)
..++++|+|-| .|.+|+++++.|.+.|.+|++++-
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 35689999998 999999999999999999988764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.97 E-value=0.095 Score=40.91 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=32.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
..++|+|+| +|..|-..+.+|.++|++|+++.+...-
T Consensus 48 ~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecccc
Confidence 358999999 8999999999999999999999876543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.88 E-value=0.11 Score=38.34 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=43.4
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-----CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-----GC 80 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-----~~ 80 (322)
.+.+|+|.|+ |.+|...+..+...|. .|++.++++.+. +..+++. . .+.+..+ + +.++...+ ++
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~--~~~~~~g---a-~~~i~~~--~-~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKL--KLAERLG---A-DHVVDAR--R-DPVKQVMELTRGRGV 101 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHH--HHHHHTT---C-SEEEETT--S-CHHHHHHHHTTTCCE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHH--HHHhhcc---c-ceeecCc--c-cHHHHHHHhhCCCCc
Confidence 3578999885 9999999998888885 566666654322 2222221 1 1333222 2 23333222 57
Q ss_pred CEEEEcccC
Q 020747 81 DGVFHTASP 89 (322)
Q Consensus 81 d~vih~A~~ 89 (322)
|+||.++|-
T Consensus 102 d~vid~~g~ 110 (172)
T d1h2ba2 102 NVAMDFVGS 110 (172)
T ss_dssp EEEEESSCC
T ss_pred eEEEEecCc
Confidence 999999863
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.83 E-value=0.072 Score=42.70 Aligned_cols=32 Identities=19% Similarity=0.030 Sum_probs=29.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
-|+|+| +|..|..++.+|+++|++|+++.+..
T Consensus 5 DvvIIG-aGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 388998 89999999999999999999998754
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.25 Score=39.94 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 17 SGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 17 tG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
||-.|.+|+++|+.+|++|+.+.+..+-
T Consensus 45 SGk~G~alA~~~~~~Ga~V~li~g~~s~ 72 (290)
T d1p9oa_ 45 SGRRGATSAEAFLAAGYGVLFLYRARSA 72 (290)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEETTSC
T ss_pred chHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 6899999999999999999999876543
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.099 Score=40.01 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=43.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcCh----hhhhhccCCCCcEEEEE-ccCCCccchHHhhC-CCCE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKT----EHLRELDGATERLHLFK-ANLLEEGSFDSAVD-GCDG 82 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~-~~d~ 82 (322)
|||+|.| ++-.|.++++.|++.|++|.++.-.+++... ..+.+... ..++.++. .++.+++.++.+-+ ++|+
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~-~~~i~~~~~~~~~~~~~~~~i~~~~~Dl 78 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAA-ERGIPVYAPDNVNHPLWVERIAQLSPDV 78 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHH-HHTCCEECCSCCCSHHHHHHHHHTCCSE
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHH-HcCCcceecccccchhhhhhhhhhcccc
Confidence 4688886 5558999999999999998776543322111 01111110 11244443 45555544443332 6898
Q ss_pred EEEcc
Q 020747 83 VFHTA 87 (322)
Q Consensus 83 vih~A 87 (322)
+|...
T Consensus 79 ii~~g 83 (203)
T d2blna2 79 IFSFY 83 (203)
T ss_dssp EEEES
T ss_pred eeeee
Confidence 88665
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.51 E-value=0.073 Score=39.78 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=31.1
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.++|+|+|.| +|..+++++..|.+.| +|++..|+.++
T Consensus 16 ~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~k 52 (177)
T d1nvta1 16 VKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEK 52 (177)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHH
T ss_pred cCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhH
Confidence 4679999999 6789999999998777 88888887544
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.11 Score=46.03 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=63.2
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCCCcCh---------hh---------hhhccCCCC--cEEEEEcc
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPNSPKT---------EH---------LRELDGATE--RLHLFKAN 66 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~---------~~---------~~~~~~~~~--~~~~~~~D 66 (322)
..+|+|.|+ |.+|+++++.|+..|. +++++|.+.-.... +. .+.+...++ ++..+..+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 368999995 7799999999999995 67777654322111 00 000111122 23344433
Q ss_pred CCCc-cchHHhhCCCCEEEEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecchhhhccC
Q 020747 67 LLEE-GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSIGAMLLN 137 (322)
Q Consensus 67 l~~~-~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~~~~~~~ 137 (322)
+.+. +.-...+++.|+||.+. . |......+-+.|++. ++ .+|+.+|. +.+|.
T Consensus 104 ~~~~~~~~~~~~~~~dvVv~~~--------~--------~~~~~~~l~~~c~~~-~i-p~i~~~~~-G~~G~ 156 (529)
T d1yova1 104 PENLLDNDPSFFCRFTVVVATQ--------L--------PESTSLRLADVLWNS-QI-PLLICRTY-GLVGY 156 (529)
T ss_dssp HHHHHHSCGGGGGGCSEEEEES--------C--------CHHHHHHHHHHHHHH-TC-CEEEEEEE-TTEEE
T ss_pred chhhhhhHHHHhcCCCEEEECC--------C--------CHHHHHHHHHHHHHc-CC-CEEEEecc-CCEEE
Confidence 3221 11124566789998553 1 223344677888886 54 58888887 66654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.42 E-value=0.016 Score=45.42 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=24.3
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVK 36 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~ 36 (322)
|||+|+| +|.+|...+.+|+++|++|+
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCce
Confidence 4799999 89999999999999998754
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=91.37 E-value=0.11 Score=37.65 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=29.5
Q ss_pred CcEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~ 42 (322)
+|+|.|.|+||-||...+.-+.+. .++|.+++-..
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~ 38 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR 38 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence 389999999999999999988775 48888886543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.28 E-value=0.086 Score=42.77 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=29.2
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 42 (322)
.+|+|+| +|.+|..++.+|+++|. +|.+++|+.
T Consensus 2 ~dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 3699999 89999999999999995 699998864
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.23 E-value=0.061 Score=40.22 Aligned_cols=32 Identities=34% Similarity=0.364 Sum_probs=27.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
.+|+|.| +|++|-+++..|.+.|++|.++.+.
T Consensus 4 a~VvIIG-gG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 4 APVVVLG-AGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SSEEEEC-CSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCEEEEC-ccHHHHHHHHHHHhcCCceEEEEEe
Confidence 5699999 8999999999999999886665543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.18 E-value=0.11 Score=42.81 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=30.6
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 43 (322)
+|+|+|+| +|.-|-..+..|+++| ++|+++.|+..
T Consensus 4 ~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 4 IRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 48999999 8999999999999877 69999988754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.16 E-value=0.21 Score=34.91 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=56.0
Q ss_pred cEEEEECCcchhHHHHHHHHHH-CCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhC-CCCEEEEc
Q 020747 9 KVVCVTGASGFVASWLVKLLLQ-RGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVD-GCDGVFHT 86 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-~~d~vih~ 86 (322)
.+|+|.| +|.+|++|+++|.. .||+++++.-+......... .++..+ .+++++++.+ .++.++-+
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I-------~Gi~V~-----~~~~l~~~~~~~i~iai~~ 70 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV-------RGGVIE-----HVDLLPQRVPGRIEIALLT 70 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE-------TTEEEE-----EGGGHHHHSTTTCCEEEEC
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE-------CCEEEe-----cHHHHHHHHhhcccEEEEe
Confidence 5899999 89999999998764 47888877544322211111 123443 2345666665 45554433
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
... .....+++.|.+. +++.+..++..
T Consensus 71 i~~-----------------~~~~~I~d~l~~~-gIk~I~~f~~~ 97 (126)
T d2dt5a2 71 VPR-----------------EAAQKAADLLVAA-GIKGILNFAPV 97 (126)
T ss_dssp SCH-----------------HHHHHHHHHHHHH-TCCEEEECSSS
T ss_pred CCH-----------------HHHHHHHHHHHHc-CCCEEeecCce
Confidence 210 1124577777777 89988888775
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=91.14 E-value=0.15 Score=39.75 Aligned_cols=36 Identities=33% Similarity=0.231 Sum_probs=32.1
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
++++++|+|-| -|-+|+++++.|.+.|.+|++.+.+
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~ 71 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVN 71 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeeccc
Confidence 46789999999 9999999999999999999987654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.25 Score=41.10 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=59.1
Q ss_pred cEEE-EECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccc-hHHhhCCCCEEEEc
Q 020747 9 KVVC-VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGS-FDSAVDGCDGVFHT 86 (322)
Q Consensus 9 ~~il-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~-~~~~~~~~d~vih~ 86 (322)
.+|+ +.+|+|.+|-.|+ +.+.+|+++..+++.............-.+++++.+|..+.-. ........|+||
T Consensus 214 ~~vlDLycG~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi-- 287 (358)
T d1uwva2 214 DRVLDLFCGMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL-- 287 (358)
T ss_dssp CEEEEESCTTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE--
T ss_pred ceEEEecccccccchhcc----ccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE--
Confidence 4555 7899999998775 4678999998765432221111111123568999998876432 222233578887
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecc
Q 020747 87 ASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSS 130 (322)
Q Consensus 87 A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS 130 (322)
-+|+..-.. .+++.+.+. ++++|||+|-
T Consensus 288 --------lDPPR~G~~-------~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 288 --------LDPARAGAA-------GVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp --------ECCCTTCCH-------HHHHHHHHH-CCSEEEEEES
T ss_pred --------eCCCCccHH-------HHHHHHHHc-CCCEEEEEeC
Confidence 233332221 344555555 6889999984
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=90.72 E-value=0.12 Score=40.98 Aligned_cols=35 Identities=26% Similarity=0.103 Sum_probs=31.2
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEe
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r 40 (322)
..++++|.|-| .|-+|+++++.|.+.|.+|++++-
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999 899999999999999999988753
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.64 E-value=0.13 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.044 Sum_probs=27.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC--CeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG--YTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~ 42 (322)
|||+|.| +|++|-+++..|.+.+ .+|+++.|..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 5799999 7899999999999864 5788887754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.35 E-value=0.09 Score=42.32 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=29.5
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
+|+|.| .|-.|..++..|.+.|++|.++.|++
T Consensus 4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 799999 67999999999999999999998864
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=90.14 E-value=0.39 Score=35.41 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEE---------ccCCCccchHHhhC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFK---------ANLLEEGSFDSAVD 78 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~Dl~~~~~~~~~~~ 78 (322)
++|.|-| .|-||+.+++.|.+++ .+|+++.-..+......+... +..+.... ..+.-...+..+++
T Consensus 2 ~~VgING-fGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 77 (171)
T d1cf2o1 2 KAVAING-YGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKK---GYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (171)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHT---TCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred eEEEEEc-CcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhc---CCceEecccccceeecccCcccCCChhHhhc
Confidence 7899998 8999999999998876 577766433222111111111 11111100 01222234566677
Q ss_pred CCCEEEEcccCc
Q 020747 79 GCDGVFHTASPV 90 (322)
Q Consensus 79 ~~d~vih~A~~~ 90 (322)
++|+||-|.|.+
T Consensus 78 ~vDvViEcTG~f 89 (171)
T d1cf2o1 78 EADIVIDCTPEG 89 (171)
T ss_dssp TCSEEEECCSTT
T ss_pred CCCEEEEccCCC
Confidence 999999998764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.18 Score=41.07 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
+.+||+|+| +|.-|-..+.+|.++|++|+++-.+.
T Consensus 4 ~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 346899999 89999999999999999999886543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.77 E-value=0.21 Score=36.88 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCcEEEEECCcchhHHHHHHHHHHCC-CeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCcc----chHHhh--CC
Q 020747 7 EEKVVCVTGASGFVASWLVKLLLQRG-YTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEG----SFDSAV--DG 79 (322)
Q Consensus 7 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----~~~~~~--~~ 79 (322)
++.+|+|.|+ |.+|...+..+...| .+|+++++++.+. +...++.- .+.+ |..+.+ ...... .+
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl--~~a~~~GA----d~~i--n~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKF--EKAKVFGA----TDFV--NPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHTTC----CEEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHH--HHHHHcCC----cEEE--cCCCcchhHHHHHHhhccCC
Confidence 4678999996 557777777777776 5788888776443 33333221 1222 322222 122222 26
Q ss_pred CCEEEEcccC
Q 020747 80 CDGVFHTASP 89 (322)
Q Consensus 80 ~d~vih~A~~ 89 (322)
+|+|+.+.|.
T Consensus 99 ~d~vid~~G~ 108 (175)
T d1cdoa2 99 VDFSLECVGN 108 (175)
T ss_dssp BSEEEECSCC
T ss_pred cceeeeecCC
Confidence 8999988864
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.17 Score=35.91 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHH----CCCeEEEEEeCCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQ----RGYTVKATVRDPNS 44 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~ 44 (322)
.++++|.| +||+|-+++..|.+ .|.+|+.+.+....
T Consensus 37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~ 76 (137)
T d1m6ia2 37 VKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKGN 76 (137)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence 47899998 69999999998863 58999998876543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.55 E-value=0.24 Score=33.92 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.1
Q ss_pred CcEEEEECCcchhHHHHHHHHHH---CCCeEEEEEeCCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQ---RGYTVKATVRDPN 43 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~ 43 (322)
.++++|.| .|++|-+++..|.+ .|.+|.++.|.+.
T Consensus 18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence 37999999 89999999987654 4889999988754
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=89.44 E-value=0.18 Score=41.93 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=28.6
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|+|+| +|+-|..++.+|.++|++|+++-+..
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEeC-cCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 78898 99999999999999999999998853
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.08 E-value=0.18 Score=36.65 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=26.5
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
||+|.| +|++|-+++..|. ++.+|+++.|.+
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cCCCEEEEeccc
Confidence 799999 7999999999986 478999887754
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=88.41 E-value=0.19 Score=39.53 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=28.7
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 42 (322)
..+|+|.| .|.+|++++..|+..|. +++++|.+.
T Consensus 30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 47999999 78899999999999996 677776543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=88.36 E-value=0.61 Score=32.80 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=28.0
Q ss_pred CcEEEEECCc---chhHHHHHHHHHHCCCeEEEEE
Q 020747 8 EKVVCVTGAS---GFVASWLVKLLLQRGYTVKATV 39 (322)
Q Consensus 8 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~ 39 (322)
.|+|.|.||| +-.|..+++.|.+.||+++.+.
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~ 47 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN 47 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEE
Confidence 4789999998 5699999999999999987663
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.26 E-value=0.22 Score=38.76 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=28.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGY-TVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 42 (322)
+|+|+| +|.-|-..+.+|.++|+ +|+++.++.
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 699999 89999999999999996 799997764
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=87.96 E-value=0.21 Score=38.07 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=25.3
Q ss_pred cEEEEECCcchhH-----HHHHHHHHHCCCeEEEEE
Q 020747 9 KVVCVTGASGFVA-----SWLVKLLLQRGYTVKATV 39 (322)
Q Consensus 9 ~~ilVtGatG~iG-----~~l~~~L~~~g~~V~~~~ 39 (322)
|+++|||-...+| .+|+..|.++|++|..++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 7999999443666 578899999999998874
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=87.95 E-value=0.28 Score=40.09 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=24.1
Q ss_pred cEEEEEC-Cc-chh--HHHHHHHHHHCCCeEEEEEeC
Q 020747 9 KVVCVTG-AS-GFV--ASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 9 ~~ilVtG-at-G~i--G~~l~~~L~~~g~~V~~~~r~ 41 (322)
|||+|++ || |.+ +.+|+++|.++||+|..+...
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~ 37 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA 37 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 5677765 44 454 456899999999999877643
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.83 E-value=0.33 Score=38.23 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=29.8
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCC-eEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGY-TVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~ 43 (322)
++|+|+| +|.-|..++..|.+.|. +|.++.|++.
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 5799999 89999999999999995 8888888653
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.43 Score=36.21 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=27.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|||++.| ++..|..+++.|.++||+|.++...+
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p 33 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVP 33 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4788887 67889999999999999998776543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.32 Score=39.67 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=28.5
Q ss_pred EEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 11 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|+|+| +|.-|-..+.+|.++|++|+++.++.
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 78899 89999999999999999999998755
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=86.32 E-value=0.54 Score=39.53 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=24.8
Q ss_pred cEEEEECC------cchhH---HHHHHHHHHCCCeEEEEEeCC
Q 020747 9 KVVCVTGA------SGFVA---SWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 9 ~~ilVtGa------tG~iG---~~l~~~L~~~g~~V~~~~r~~ 42 (322)
|||++++. +|++| .+|+++|.+.||+|.++....
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~~ 43 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSH 43 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 46777553 35554 678999999999999887543
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.24 E-value=0.56 Score=36.56 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCcEEEEECCcchhHHHHHHHHHHC-CCeEEEEEe
Q 020747 6 GEEKVVCVTGASGFVASWLVKLLLQR-GYTVKATVR 40 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r 40 (322)
.++++|+|-| .|-+|+++++.|.++ |.+|+++.-
T Consensus 30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD 64 (239)
T d1gtma1 30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD 64 (239)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccc
Confidence 5679999999 699999999999875 899887753
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=85.89 E-value=0.39 Score=38.91 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
-.|+|+| +|+-|-..+.+|.+.|.+|.++.+.++
T Consensus 8 ~dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVG-AGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4799999 899999999999999999999987654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.60 E-value=0.38 Score=37.30 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCcEEEEEC-CcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTG-ASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
.+++||=.| |+|+.-++|++..-..| +|++++.++... +.+.+.......+..+..|..+++........+|+|++
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l--~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVL--RELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHH--HHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHH--HHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE
Confidence 367888444 68999999988654444 899998876432 22222223345688899999998877766677898876
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
..
T Consensus 150 d~ 151 (227)
T d1g8aa_ 150 DV 151 (227)
T ss_dssp CC
T ss_pred Ec
Confidence 53
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=85.18 E-value=0.37 Score=40.03 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=28.2
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
-|+|+| +|+-|..++.+|.+.|++|+++-+.
T Consensus 9 dvIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIG-SGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478888 8999999999999999999999875
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=85.07 E-value=0.42 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=29.6
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
-|+|+| +|-.|...+..|.++|++|+++.+...
T Consensus 4 DViIIG-aG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIG-GGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999 789999999999999999999987653
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=84.94 E-value=1.4 Score=31.69 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=38.2
Q ss_pred cEEEEECCcchhHHH-HHHHHHHC-CCeEEEEE-eCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 9 KVVCVTGASGFVASW-LVKLLLQR-GYTVKATV-RDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 9 ~~ilVtGatG~iG~~-l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++|.|+| +|.+|+. .++.|... +.+++++. ++.... ....... ++.-.+.++.+++++|+|+-
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~------------~~~~~~~~~~l~~~~D~V~I 67 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW------------RIPYADSLSSLAASCDAVFV 67 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH------------TCCBCSSHHHHHTTCSEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhcc------------cccccccchhhhhhcccccc
Confidence 5899999 6999975 56666654 67877665 433222 1111111 11123346667788999875
Q ss_pred cc
Q 020747 86 TA 87 (322)
Q Consensus 86 ~A 87 (322)
+.
T Consensus 68 ~t 69 (164)
T d1tlta1 68 HS 69 (164)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.87 E-value=0.69 Score=29.91 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=25.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKAT 38 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~ 38 (322)
|||||.| +|.=-.+|+..|.+..++|++.
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~ 29 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFY 29 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEe
Confidence 5899999 7777899999999999988765
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.61 E-value=2.4 Score=34.20 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred CCcEEEEECC-cchhHHHHHHHHHHCC-CeEEEEEeCCCCcCh-hhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEE
Q 020747 7 EEKVVCVTGA-SGFVASWLVKLLLQRG-YTVKATVRDPNSPKT-EHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGV 83 (322)
Q Consensus 7 ~~~~ilVtGa-tG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 83 (322)
++++||-.|+ +|.+ +..+++.| .+|++++.++. ... ...........+++++.+|+.+.+. -.+.+|+|
T Consensus 33 ~~~~VLDiGcG~G~l----s~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~---~~~~~D~i 104 (316)
T d1oria_ 33 KDKVVLDVGSGTGIL----CMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL---PVEKVDII 104 (316)
T ss_dssp TTCEEEEETCTTSHH----HHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC---SSSCEEEE
T ss_pred CcCEEEEEecCCcHH----HHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc---ccceeEEE
Confidence 5788997774 4443 44566677 57999986542 211 1111223345679999999987542 12356888
Q ss_pred EEc
Q 020747 84 FHT 86 (322)
Q Consensus 84 ih~ 86 (322)
+..
T Consensus 105 vs~ 107 (316)
T d1oria_ 105 ISE 107 (316)
T ss_dssp EEC
T ss_pred eee
Confidence 754
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.49 E-value=0.59 Score=36.31 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHH-CCCeEEEEEe
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQ-RGYTVKATVR 40 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r 40 (322)
..++++|.|-| .|-+|+++++.|.+ .|.+|++++-
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence 45689999998 99999999999975 5999988763
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=84.03 E-value=2.8 Score=30.37 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred cEEEEECCcchhHHHHHHHHHHCCCeEEEEE
Q 020747 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATV 39 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~ 39 (322)
+||.|=| -|-||+.+.|.|.+++.+|.++.
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEEC
Confidence 4788877 89999999999999999988775
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=83.77 E-value=0.52 Score=34.28 Aligned_cols=74 Identities=19% Similarity=0.101 Sum_probs=40.6
Q ss_pred cEEEEECCcchhHHHHHHH-HHHC-----CCeEEEEEeCCCCcCh--hhhhhccCCCCcEEEEEccCCCccchHHhhCCC
Q 020747 9 KVVCVTGASGFVASWLVKL-LLQR-----GYTVKATVRDPNSPKT--EHLRELDGATERLHLFKANLLEEGSFDSAVDGC 80 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~-L~~~-----g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (322)
|||.|+|| |.+|...+-. |++. +.++..+|.++.+... +.......... .... + .+..+.++++
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~--~~~~---t--~~~~~~l~~a 72 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRF--KVLI---S--DTFEGAVVDA 72 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSS--EEEE---C--SSHHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCc--eEEE---e--cCcccccCCC
Confidence 47999997 4456555533 3321 3578888876644321 00011111111 2111 1 2346688999
Q ss_pred CEEEEcccCc
Q 020747 81 DGVFHTASPV 90 (322)
Q Consensus 81 d~vih~A~~~ 90 (322)
|+||..|+..
T Consensus 73 DvVVita~~~ 82 (162)
T d1up7a1 73 KYVIFQFRPG 82 (162)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEecccC
Confidence 9999999853
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=83.33 E-value=1 Score=36.61 Aligned_cols=115 Identities=15% Similarity=0.021 Sum_probs=62.5
Q ss_pred CCcEEE-EECCcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCC-CCcEEEEEccCCCccc-hHHhhCCCCEE
Q 020747 7 EEKVVC-VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGA-TERLHLFKANLLEEGS-FDSAVDGCDGV 83 (322)
Q Consensus 7 ~~~~il-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~-~~~~~~~~d~v 83 (322)
++++|| +.-++|.++-+++ ..+.+|++++.++..... ..++...+ -.+++++.+|..+... +...-+..|.|
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a----~g~~~V~~vD~s~~al~~-a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V 219 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLA----LGFREVVAVDSSAEALRR-AEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV 219 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHH----HHEEEEEEEESCHHHHHH-HHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeeeccCCCCcHHHHHHH----hcCCcEEeecchHHHHHH-HHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence 567888 6777888876654 346799999987644322 11111111 2468899998866432 22223467999
Q ss_pred EEcccCcccCCCCCcchhhhHHHHHHHHHHHHHhhcCCccEEEEecch
Q 020747 84 FHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTSSI 131 (322)
Q Consensus 84 ih~A~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~i~~SS~ 131 (322)
|.....+... .. . ...-......+++.+.+....+-++..+|+
T Consensus 220 i~DpP~~~~~-~~---~-~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 220 VLDPPAFAKG-KK---D-VERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp EECCCCSCCS-TT---S-HHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcCCccccc-hH---H-HHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8765332221 11 1 122233344555555554233345666665
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.24 E-value=0.53 Score=38.78 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=28.6
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
-|+|+| +|.-|.-++.+|.+.|++|+++-+..
T Consensus 6 DviIVG-sG~aG~v~A~~La~~G~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVG-SGPIGCTYARELVGAGYKVAMFDIGE 37 (379)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cEEEEC-cCHHHHHHHHHHhhCCCeEEEEecCC
Confidence 578888 89999999999999999999997654
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=82.92 E-value=0.76 Score=33.19 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=23.2
Q ss_pred CcEEEEECCcchhHHHHH-HHHHHC-CCeEEEEE-eCC
Q 020747 8 EKVVCVTGASGFVASWLV-KLLLQR-GYTVKATV-RDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~-~~L~~~-g~~V~~~~-r~~ 42 (322)
..|+.|.| +|.||+.+. +.|.+. ..++.++. |+.
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~ 40 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDA 40 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecch
Confidence 46999999 999998754 554444 35777764 443
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.44 E-value=0.75 Score=35.16 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=29.3
Q ss_pred CcEEEEECCcchhHH-----HHHHHHHHCCCeEEEEEeCC
Q 020747 8 EKVVCVTGASGFVAS-----WLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~-----~l~~~L~~~g~~V~~~~r~~ 42 (322)
+|.|.|+|+-|++|+ +|+..|+++|++|.+++-+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~ 41 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 378999999888875 78888999999999998654
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=82.41 E-value=0.58 Score=37.59 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=29.1
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
-|+|+| +|..|...+.+|.++|.+|+++.+..
T Consensus 18 DVlVIG-~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVG-SGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 489999 89999999999999999999998754
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| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=82.23 E-value=0.5 Score=37.32 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=28.8
Q ss_pred cEEEEECCcchhHH-----HHHHHHHHCCCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVAS-----WLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~-----~l~~~L~~~g~~V~~~~r~~~ 43 (322)
++|.|+| =|++|+ +|+..|++.|++|.++|-++.
T Consensus 2 r~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 2 RQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 7899998 777765 677799999999999999864
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| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.56 E-value=0.4 Score=36.59 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCcEEEEEC-CcchhHHHHHHHHHHCCCeEEEEEeCCCCcChhhhhhccCCCCcEEEEEccCCCccchHHhhCCCCEEEE
Q 020747 7 EEKVVCVTG-ASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEEGSFDSAVDGCDGVFH 85 (322)
Q Consensus 7 ~~~~ilVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 85 (322)
++++||=.| |+|+.-.+|++.. ..| +|++++.++.... .+.+.....+++.++.+|..++......+..+|+|+|
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~~i~--~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAKPFE--KLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHHHHH--HHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHHHHH--HHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence 357888666 5777777777654 455 8999988763322 1222222235789999999998877767777888876
Q ss_pred c
Q 020747 86 T 86 (322)
Q Consensus 86 ~ 86 (322)
.
T Consensus 132 ~ 132 (209)
T d1nt2a_ 132 D 132 (209)
T ss_dssp C
T ss_pred c
Confidence 5
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| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=81.19 E-value=0.073 Score=38.56 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=19.9
Q ss_pred EEECCcchhHHHHHHHHHHCCCeEEEEEeCCC
Q 020747 12 CVTGASGFVASWLVKLLLQRGYTVKATVRDPN 43 (322)
Q Consensus 12 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 43 (322)
-++| +|.+|+++++.|.+.++.+.+.+|+.+
T Consensus 3 gfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~ 33 (153)
T d2i76a2 3 NFVG-TGTLTRFFLECLKDRYEIGYILSRSID 33 (153)
T ss_dssp EEES-CCHHHHHHHHTTC----CCCEECSSHH
T ss_pred EEEe-CcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 3566 999999999988664444456666543
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| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=81.00 E-value=0.64 Score=33.41 Aligned_cols=31 Identities=23% Similarity=0.066 Sum_probs=25.7
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeCC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP 42 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~ 42 (322)
||.++| .|..|+.+++.|++.|+.| +..|+.
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~ 32 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTF 32 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSST
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCH
Confidence 588899 7999999999999999865 455554
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| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=80.98 E-value=0.89 Score=34.59 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=33.9
Q ss_pred CCCCcEEEEECCcchhHHHHHHHHHHCCCeEEEEEeCCCC
Q 020747 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNS 44 (322)
Q Consensus 5 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 44 (322)
.+++|+|+|.| +|--|-.+|.+|.+.+.+++.+.|+...
T Consensus 29 ~~~gK~V~VvG-~G~Sa~dia~~~~~~~~~~~~~~~~~~~ 67 (235)
T d1w4xa2 29 DFSGQRVGVIG-TGSSGIQVSPQIAKQAAELFVFQRTPHF 67 (235)
T ss_dssp CCBTCEEEEEC-CSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred CCCCCEEEEEC-CCccHHHHHHHHHhhhccccccccccce
Confidence 46789999999 8889999999999999998888887543
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| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=80.82 E-value=0.83 Score=34.48 Aligned_cols=31 Identities=10% Similarity=-0.081 Sum_probs=27.8
Q ss_pred EEEEECCcchhHHHHHHHHHHCCCeEEEEEeC
Q 020747 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRD 41 (322)
Q Consensus 10 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 41 (322)
-++|+| +|+.|...+.++.+.|.+|.++.+.
T Consensus 4 DvvVIG-~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIG-GGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCEEEEEecc
Confidence 378999 5999999999999999999999874
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| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.72 E-value=1.1 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.134 Sum_probs=28.3
Q ss_pred CcEEEEECCcchhHHHHHHHHHHCCCe-EEEEEeCC
Q 020747 8 EKVVCVTGASGFVASWLVKLLLQRGYT-VKATVRDP 42 (322)
Q Consensus 8 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~ 42 (322)
.++|+|+| .|..|-..+..|++.|.+ |+.+.|+.
T Consensus 45 ~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLG-AGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 46899998 899999999999999865 77777654
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| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.50 E-value=0.73 Score=35.22 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.4
Q ss_pred cEEEEECCcchhHHHHHHHHHHC--CCeEEEEEeCCC
Q 020747 9 KVVCVTGASGFVASWLVKLLLQR--GYTVKATVRDPN 43 (322)
Q Consensus 9 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~ 43 (322)
+||+|+| +|--|-..+.+|.+. |++|+++.+.+.
T Consensus 2 ~kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999 899999999999875 789999987653
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| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=80.08 E-value=0.94 Score=33.38 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCCcEEEEECCcchhHHH-HHHHHHHCC--CeEEEEE
Q 020747 6 GEEKVVCVTGASGFVASW-LVKLLLQRG--YTVKATV 39 (322)
Q Consensus 6 ~~~~~ilVtGatG~iG~~-l~~~L~~~g--~~V~~~~ 39 (322)
|+..||.|.| +|.+|+. .++.|.+.+ .+++++.
T Consensus 1 MkkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~ 36 (181)
T d1zh8a1 1 LRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVT 36 (181)
T ss_dssp CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEE
T ss_pred CCCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3456999999 7999986 467777643 4777654
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