Citrus Sinensis ID: 020771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLPFYS
Secondary Structure (PSIPRED)
ccHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEEEEcccEEEEEEcccccccccccEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHHHHHccccccccccEEEEEcccccEEEEcccccccccccccEEEEEEEEEcHEEEEEEEcccccccccccEEEEEccHHHHHHHcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEccccEEEEEcccHHHcccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAYYRRAKAALDAFRNlsskavpkspvqescsrvysngsansakfssgfysySCISQrlrnsycnpnfntakryyyvdryhvqhfrprgprkwlqnprTVFIVVVIGSGAFITLYLgnletvpytkrTHFVLLSKAVERQLGESQFQQMKAAFKgkilpaihpdsVRVRLIAKDIIEALQRGLkhetvwsdmgyastetdfvnegRAARDTLRALSensergktegkwhqedeilddkWVQQSRKKGQEKGLQSAtshldglnweVLVVNEpvinafclpggkivVFTGLLEHFRTDAEIATIIgheprglqricglpfys
Flexible Loop (DISEMBL)
MAYYRRAKAAldafrnlsskavpkspvqesCSRVYSNgsansakfsSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFrprgprkwlqnpRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRglkhetvwsdmgyastetdfvnegRAARDTLRalsensergktegkwhqedeilddKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIigheprglqricglpfys
Low Complexity Region (SEG)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLPFYS
Disordered region (IsUnstruct)
********************************************FSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*******************************************************HLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLPF**
Disordered Region (DISOPRED)
**Y****KAAL*******************************************************NFNTAKRYYYVDRYHVQ*F**RGP*KWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVN*********************************DKWVQQSRKKGQEKGLQS*TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRIC******
Disordered Region (DISEMBL)
MAYYRRAKAALDAFRNLSS***************YSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRAL**************QEDEILDDKWVQ**************TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLPFYS
Disordered Region (DISPRO)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*EGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLPFYS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLPFYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
P36163	345	Mitochondrial metalloendo	yes	no	0.158	0.147	0.490	1e-07
Q9P7G4	337	Mitochondrial metalloendo	yes	no	0.140	0.133	0.415	2e-06
Q96E52	524	Metalloendopeptidase OMA1	yes	no	0.102	0.062	0.408	2e-05
Q9D8H7	521	Metalloendopeptidase OMA1	yes	no	0.090	0.055	0.444	2e-05
D3ZS74	504	Metalloendopeptidase OMA1	yes	no	0.143	0.091	0.456	2e-05
Q3SZN3	523	Metalloendopeptidase OMA1	yes	no	0.093	0.057	0.456	3e-05
E9QBI7	478	Metalloendopeptidase OMA1	yes	no	0.158	0.106	0.411	3e-05

>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE
Sbjct: 152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Can cleave the misfolded multi-pass membrane protein OXA1.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHE 196

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           +  +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHE 328

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHE 324

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHE 307

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           +NW + VV+ P INAF LP G++ VFTGLL       +++ ++GHE
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHE 328

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           + +  + W V VV+ P +NAF LP G+I VFTG+L       ++  I+GHE
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHE 297

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of opa1 at S1 position, leading to opa1 inactivation and negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
255539649	482	peptidase, putative [Ricinus communis] g	0.943	0.628	0.649	1e-118
449460776	440	PREDICTED: uncharacterized protein LOC10	0.943	0.688	0.663	1e-113
449499671	440	PREDICTED: uncharacterized LOC101206881	0.943	0.688	0.663	1e-113
356530935	448	PREDICTED: uncharacterized protein LOC10	0.943	0.676	0.636	1e-109
225455604	434	PREDICTED: mitochondrial metalloendopept	0.922	0.682	0.648	1e-107
224122540	382	predicted protein [Populus trichocarpa]	0.722	0.607	0.767	1e-105
10177873	485	unnamed protein product [Arabidopsis tha	0.934	0.618	0.552	5e-96
297792483	436	peptidase M48 family protein [Arabidopsi	0.943	0.694	0.548	5e-96
30696099	442	Peptidase family M48 family protein [Ara	0.934	0.678	0.552	8e-96
356517492	445	PREDICTED: uncharacterized protein LOC10	0.934	0.674	0.562	1e-91

>gi|255539649|ref|XP_002510889.1| peptidase, putative [Ricinus communis] gi|223550004|gb|EEF51491.1| peptidase, putative [Ricinus communis]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/322 (64%), Positives = 261/322 (81%), Gaps = 19/322 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPV-QESCSRVYSNGSANSA-----KFSSGFYSYSC 54
           M  +++AK A+D FRN +SK   ++P+ QES SR+Y NGS++ +     KFS GFY YS 
Sbjct: 32  MERFKKAKLAIDTFRNYASKINHRAPLHQESISRIYQNGSSSVSSSNQSKFS-GFYPYSS 90

Query: 55  ISQRL--------RNSYCNPNF-NTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVV 105
           +SQRL        +  + NP   ++ KR+YYVDRY V HF+PRGPR+W QNPR+V IV +
Sbjct: 91  VSQRLGLGFQMGTKKIHSNPFLGSSGKRFYYVDRYQVHHFKPRGPRRWFQNPRSVLIVFL 150

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
           +GSG FIT+Y GNLETVPYTKR HFVLL+K++E+++GE+QF+QMKAAFKGK+LPAIHP+S
Sbjct: 151 VGSGVFITVYFGNLETVPYTKRKHFVLLAKSMEKKIGENQFEQMKAAFKGKMLPAIHPES 210

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
           VRVRLIAKDIIEALQRGL+ ETVWSDMGYAS+E D  +E    R+TLRAL+EN E  K E
Sbjct: 211 VRVRLIAKDIIEALQRGLRQETVWSDMGYASSENDMKHEA-TGRETLRALTENEE--KVE 267

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIV 285
            KW++EDE+LDD W+Q SRKKGQE+G ++ TSHL+GLNWEVLVVN+PV+NA CLPGGKI+
Sbjct: 268 TKWYKEDEVLDDNWIQHSRKKGQERGSRAETSHLEGLNWEVLVVNDPVVNALCLPGGKII 327

Query: 286 VFTGLLEHFRTDAEIATIIGHE 307
           VFTGLL+HF+TDAEIATIIGHE
Sbjct: 328 VFTGLLDHFKTDAEIATIIGHE 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460776|ref|XP_004148121.1| PREDICTED: uncharacterized protein LOC101206881 [Cucumis sativus]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 242/312 (77%), Gaps = 9/312 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGKTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHE 307
           +DAEIATIIGHE
Sbjct: 297 SDAEIATIIGHE 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499671|ref|XP_004160882.1| PREDICTED: uncharacterized LOC101206881 [Cucumis sativus]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/312 (66%), Positives = 242/312 (77%), Gaps = 9/312 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGRTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHE 307
           +DAEIATIIGHE
Sbjct: 297 SDAEIATIIGHE 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530935|ref|XP_003534034.1| PREDICTED: uncharacterized protein LOC100799127 [Glycine max]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/319 (63%), Positives = 248/319 (77%), Gaps = 16/319 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS-AKFSS--GFYSYSCISQ 57
           M +YRR K ALD FR L+S+  P++P+ +  +R+ S+G  +S +K +S  GF S+   SQ
Sbjct: 1   MGWYRRGKLALDHFRRLASRVTPQNPIFQRGARICSSGYLDSGSKVASFNGFSSFCSTSQ 60

Query: 58  RLRNSYC---NPNFNT-----AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSG 109
           RL        N NF+      AKR+YYVD  +V+HF+PRGP  W +NPR VFIVV++GSG
Sbjct: 61  RLGTRGVVGVNRNFHNSVLFGAKRFYYVDPRNVRHFKPRGPWHWFENPRHVFIVVMVGSG 120

Query: 110 AFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
             IT+Y GN+ETVPYTKRTH +LLSKA+ER+LGES+F+Q+K  FKGKILP IHP+SVRV 
Sbjct: 121 VLITVYFGNIETVPYTKRTHLILLSKAMERKLGESEFEQIKTGFKGKILPPIHPESVRVT 180

Query: 170 LIAKDIIEALQRGL-KHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKW 228
           +IAKDII+ALQRGL K E VWSD+GYAS     V EG   R+TL AL+ + E  K EG W
Sbjct: 181 MIAKDIIDALQRGLRKEEQVWSDLGYASEHAMLV-EGD-GRETLNALAGSEE--KIEGNW 236

Query: 229 HQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFT 288
            +EDEILDDKW+QQSRKKGQE+G Q+ATSHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFT
Sbjct: 237 AKEDEILDDKWIQQSRKKGQERGSQAATSHLDGLNWEILVVNEPVVNAFCLPGGKIVVFT 296

Query: 289 GLLEHFRTDAEIATIIGHE 307
           GLLEHF++DAEIATIIGHE
Sbjct: 297 GLLEHFKSDAEIATIIGHE 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455604|ref|XP_002269952.1| PREDICTED: mitochondrial metalloendopeptidase OMA1 [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/313 (64%), Positives = 247/313 (78%), Gaps = 17/313 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSA----NSAKFSSGFYSYSCIS 56
           M++YRRAK+A +A R+    A+P++P+QE  SR+  N S+    N+++ S GF  +S IS
Sbjct: 1   MSFYRRAKSAFNALRS----AIPRTPIQEPTSRITHNPSSIYSSNNSRVS-GFSPFSLIS 55

Query: 57  QR--LRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITL 114
            +  L+  Y NP    A+RYYYVDRY VQHFRPRGPR+W QNPRTVFIVVV+GSG  IT+
Sbjct: 56  CQIGLKRCYPNPFLGGARRYYYVDRYRVQHFRPRGPRRWFQNPRTVFIVVVVGSGVLITV 115

Query: 115 YLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKD 174
           Y GNLE +PYT RTHFVLLS+++ER++GE+QF+Q+K  FKGKILPAIHPDSVRVRLI+ D
Sbjct: 116 YFGNLEAIPYTNRTHFVLLSRSMERRIGEAQFEQLKGTFKGKILPAIHPDSVRVRLISND 175

Query: 175 IIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI 234
           II+ALQRGL HE VWSD GYA+ E DF+ +    R+TL AL +        GKWH++DEI
Sbjct: 176 IIKALQRGLSHERVWSDPGYAA-EGDFMVDEARTRETLAALMDTP-----PGKWHKDDEI 229

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHF 294
           LDDKWV QSRK+ QE+G +  T HL+GLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHF
Sbjct: 230 LDDKWVHQSRKEAQERGSRPTTQHLEGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHF 289

Query: 295 RTDAEIATIIGHE 307
           RTDAEIATIIGHE
Sbjct: 290 RTDAEIATIIGHE 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122540|ref|XP_002318862.1| predicted protein [Populus trichocarpa] gi|222859535|gb|EEE97082.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/237 (76%), Positives = 212/237 (89%), Gaps = 5/237 (2%)

Query: 71  AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHF 130
           AKR+YYVDRY VQHF+PRGP++W +NPRTV IVV++GSGAFIT+Y GNLETVPYTKR HF
Sbjct: 18  AKRFYYVDRYRVQHFKPRGPKRWFRNPRTVLIVVLVGSGAFITVYYGNLETVPYTKRRHF 77

Query: 131 VLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWS 190
           VLLSK +ER++GE+QF+QMKAAFKGK+LPA+HP+SVR+RLIA+DII+ALQRGLK E VWS
Sbjct: 78  VLLSKTMERKMGETQFEQMKAAFKGKMLPALHPESVRMRLIAQDIIDALQRGLKREQVWS 137

Query: 191 DMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEK 250
           DMGYAS E+D  +E  +A +TL+ALSE  E  K EGKW++EDEILDD WVQQ RKK  EK
Sbjct: 138 DMGYASQESDMAHEA-SAHETLKALSEREE--KIEGKWYKEDEILDDNWVQQCRKK--EK 192

Query: 251 GLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           GL++  SHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE
Sbjct: 193 GLKADASHLDGLNWEILVVNEPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177873|dbj|BAB11243.1| unnamed protein product [Arabidopsis thaliana]

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 175/317 (55%), Positives = 235/317 (74%), Gaps = 17/317 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 44  MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 100

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 101 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 160

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 161 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 220

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 221 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 278

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 279 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 336

Query: 291 LEHFRTDAEIATIIGHE 307
           L HF++DAE+AT+IGHE
Sbjct: 337 LNHFKSDAEVATVIGHE 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792483|ref|XP_002864126.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297309961|gb|EFH40385.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 169/308 (54%), Positives = 231/308 (75%), Gaps = 5/308 (1%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRL 59
           M++YRR K   D+ R N++ K +P+S +    + + S+G ++ +    G  S++ + Q  
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHLPSRINPIGSSGFSSISSRQVGLRSWTSLGQNT 60

Query: 60  RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNL 119
                NP  +  KR YYVDRY V+HF+PRGP +W QNPRTVF VV++GS A ITLY+GNL
Sbjct: 61  NRIAYNPFLSVPKRNYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVIVGSVALITLYVGNL 120

Query: 120 ETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEAL 179
           ETVPYTKRTHF+LLSK +E+ LGE+QF+Q+K  +KGKILPAIHP+S+RVRLIAK++I+AL
Sbjct: 121 ETVPYTKRTHFILLSKPMEKLLGETQFEQIKKTYKGKILPAIHPESIRVRLIAKEVIDAL 180

Query: 180 QRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKW 239
           QRGL +E VWSD+GYASTE+      +  ++   A+S   E   T+ KW + D++LDD+W
Sbjct: 181 QRGLSNERVWSDLGYASTESSLGGGDKGVKEIEMAMS--GEDTMTDMKWSKADQVLDDEW 238

Query: 240 VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAE 299
           +QQSRKK  +    +A+SHL+G++WEVLVVNEP++NAFCLP GKIVVFTGLL+ F++DAE
Sbjct: 239 IQQSRKKDSKA--HAASSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGLLDIFKSDAE 296

Query: 300 IATIIGHE 307
           +AT+IGHE
Sbjct: 297 VATVIGHE 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696099|ref|NP_199987.2| Peptidase family M48 family protein [Arabidopsis thaliana] gi|26451602|dbj|BAC42898.1| unknown protein [Arabidopsis thaliana] gi|332008738|gb|AED96121.1| Peptidase family M48 family protein [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 175/317 (55%), Positives = 235/317 (74%), Gaps = 17/317 (5%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 57

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 58  WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDF-VNEGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query: 291 LEHFRTDAEIATIIGHE 307
           L HF++DAE+AT+IGHE
Sbjct: 294 LNHFKSDAEVATVIGHE 310

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517492|ref|XP_003527421.1| PREDICTED: uncharacterized protein LOC100800848 [Glycine max]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/320 (56%), Positives = 230/320 (71%), Gaps = 20/320 (6%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS----AKFSSGFYSYSC-I 55
           M +YRR K ALD F +L+S+ VP++P+ +  SR++ +G  +S    A+FS    S  C I
Sbjct: 1   MGWYRRGKLALDRFHSLASRVVPQNPIFQHSSRIWQSGYLDSGSKGARFSG--LSLCCSI 58

Query: 56  SQRL--------RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIG 107
           SQRL          ++ NP    A R+YYVD  +V+HF+PRGPR W QN R +F+ V++G
Sbjct: 59  SQRLGAQGVVGVNGNFHNPFLLGANRFYYVDPCNVRHFKPRGPRHWFQNSRHIFVAVMVG 118

Query: 108 SGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVR 167
               IT++ GNLETVPYTKRTH +LLSKA+ER+LGESQF+Q+KA F+GKILP IHP+SVR
Sbjct: 119 W-VLITVFFGNLETVPYTKRTHLILLSKAMERRLGESQFEQIKADFEGKILPPIHPESVR 177

Query: 168 VRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGK 227
           V +IA +II+AL R L  E  W+D GYAS E     EG   R+TL AL  + E  K EG 
Sbjct: 178 VTMIANEIIDALLRRLMKEQGWNDFGYAS-EHAMPVEGDG-RETLSALVGSEE--KVEGS 233

Query: 228 WHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVF 287
            H+E++ILD KWV+ SRK GQE+G   ATSHL GL+WE+LVVN+P +NAFCLPGGKIVVF
Sbjct: 234 CHKENKILDGKWVRLSRKNGQERGSLIATSHLVGLDWEILVVNKPDLNAFCLPGGKIVVF 293

Query: 288 TGLLEHFRTDAEIATIIGHE 307
           TGL +HF++DAEIATIIGHE
Sbjct: 294 TGLFDHFKSDAEIATIIGHE 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2165356	442	AT5G51740 [Arabidopsis thalian	0.934	0.678	0.552	6.5e-90
ASPGD|ASPL0000044232	376	AN1850 [Emericella nidulans (t	0.152	0.130	0.44	8.7e-13
POMBASE|SPAP14E8.04	337	oma1 "metallopeptidase Oma1 (p	0.165	0.157	0.415	7.1e-12
SGD|S000001795	345	OMA1 "Metalloendopeptidase of	0.158	0.147	0.490	2.2e-11
CGD|CAL0001997	336	orf19.3827 [Candida albicans (	0.246	0.235	0.285	1.8e-09
RGD|1304821	504	Oma1 "zinc metallopeptidase ho	0.143	0.091	0.456	9.7e-08
UNIPROTKB|E1C7A6	468	OMA1 "Uncharacterized protein"	0.152	0.104	0.448	1.2e-07
UNIPROTKB|H7BZX2	328	OMA1 "Metalloendopeptidase OMA	0.143	0.140	0.434	1.3e-07
MGI|MGI:1914263	521	Oma1 "OMA1 homolog, zinc metal	0.140	0.086	0.444	2.8e-07
DICTYBASE|DDB_G0289335	687	DDB_G0289335 "Metalloendopepti	0.271	0.126	0.375	5.5e-07

TAIR|locus:2165356 AT5G51740 [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 175/317 (55%), Positives = 235/317 (74%)

Query:     1 MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
             M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct:     1 MSWYRRTKLVFDSLRRNINPKILPRSHVT---SRINNPIGSSNPSAKFSSISSREVGLRS 57

Query:    52 YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
             ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct:    58 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query:   112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
             ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct:   118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query:   172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
             AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct:   178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query:   231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
             ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct:   236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query:   291 LEHFRTDAEIATIIGHE 307
             L HF++DAE+AT+IGHE
Sbjct:   294 LNHFKSDAEVATVIGHE 310

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

ASPGD|ASPL0000044232 AN1850 [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query:   259 LDGLNWEVLVVNEP-VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +DG +W+V V+ +  ++NAF LPGGK+ VFTG+L   + +  +A ++GHE
Sbjct:   186 IDGADWKVHVIKDDNMVNAFVLPGGKVFVFTGILPICKDEDGLAAVLGHE 235

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

POMBASE|SPAP14E8.04 oma1 "metallopeptidase Oma1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 121 (47.7 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query:   255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE
Sbjct:   144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHE 196

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000001795 OMA1 "Metalloendopeptidase of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE
Sbjct:   152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0001997 orf19.3827 [Candida albicans (taxid:5476)]

 Score = 104 (41.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query:    94 LQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAF 153
             L N +T++I      G  +  Y+ NL   PYT R+ F+ +   +E ++G+  ++Q+   F
Sbjct:    39 LTNRKTLYI-----GGGLLGFYVYNLHDAPYTHRSRFIWVPYWLETKIGDYSYRQIYQQF 93

Query:   154 KGKILPAIHPDSVRVRLIAKDIIE 177
             + +ILP  +P   RV  I   +++
Sbjct:    94 QSQILPHSNPLYNRVSTIMNKLLD 117

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

RGD|1304821 Oma1 "zinc metallopeptidase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE
Sbjct:   262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHE 307

GO:0002024 "diet induced thermogenesis" evidence=ISO;ISS

GO:0004222 "metalloendopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO;ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;ISS

GO:0006629 "lipid metabolic process" evidence=ISO;ISS

GO:0006950 "response to stress" evidence=ISO;ISS

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO;ISS

GO:0034982 "mitochondrial protein processing" evidence=IEA;ISO

GO:0042407 "cristae formation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO;ISS

UNIPROTKB|E1C7A6 OMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query:   259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +  L W + VV+EP +NAF LP G++ VFTGLL       +++ I+GHE
Sbjct:   237 VSALTWAIHVVDEPEVNAFVLPNGEVFVFTGLLNAVSDIHQLSFILGHE 285

GO:0002024 "diet induced thermogenesis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

UNIPROTKB|H7BZX2 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE
Sbjct:   125 INWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHE 170

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:1914263 Oma1 "OMA1 homolog, zinc metallopeptidase (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query:   263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE
Sbjct:   280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHE 324

GO:0002024 "diet induced thermogenesis" evidence=ISO

GO:0004222 "metalloendopeptidase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IGI

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0034982 "mitochondrial protein processing" evidence=IMP

GO:0042407 "cristae formation" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

GO:0097009 "energy homeostasis" evidence=ISO

DICTYBASE|DDB_G0289335 DDB_G0289335 "Metalloendopeptidase OMA1, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
 Identities = 33/88 (37%), Positives = 45/88 (51%)

Query:   220 ERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL 279
             E G  E K    D  L +    Q+R +   K +   T   D L WE  VVN  V+NA  L
Sbjct:   397 EMGYEEMKTQLSDYFLPENNALQNRVREVAKRIIDVTDRPD-LAWECHVVNSEVVNACVL 455

Query:   280 PGGKIVVFTGLLEHFRTDAEIATIIGHE 307
             P GKI VF+ L +   ++ E+A++I HE
Sbjct:   456 PNGKIFVFSKLFDICESEDELASVISHE 483

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038511001 SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (434 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	6e-12
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	4e-09
COG0501	302	COG0501, HtpX, Zn-dependent protease with chaperon	6e-09
COG4784	479	COG4784, COG4784, Putative Zn-dependent protease [	1e-07

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 10/76 (13%)

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLL 291
           L +  +Q+     +     + ++      WEV VV+ P  NAF L GGK   +VV TGLL
Sbjct: 29  LRNARLQR---VVER---LADSAGAGFPPWEVYVVDSPQPNAFALGGGKNKRVVVTTGLL 82

Query: 292 EHFRTDAEIATIIGHE 307
               T+ E+A ++GHE
Sbjct: 83  LA-LTEDELAAVLGHE 97

Length = 223

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           A + L    +   +VN+  INAF  PGG +VV TGLL     ++E+A +I HE
Sbjct: 85  AAADLVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAENESELAGVIAHE 137

Length = 484

>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHE 307
           A         EV ++  P  NAF L G    G++VV TGLL+    D E+  ++ HE
Sbjct: 109 ARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHE 164

Length = 302

>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function prediction only]

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 211 TLRALSENSERGKTEGKWHQE------DEILDDKWVQQSRKKGQEKGLQSATSHLDGLNW 264
           T+  + +N    +   + H         E  D K  +   +     G  +A S      +
Sbjct: 32  TVDNVQKNDPLAQMGARQHPRILATYGGEYRDPKLERMVARIV---GALTAVSENPQQTY 88

Query: 265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
            + ++N P INAF LPGG + +  GLL      +E+A ++ HE
Sbjct: 89  RITILNSPNINAFALPGGYLYITRGLLALANDSSEVAAVLAHE 131

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG2661	424	consensus Peptidase family M48 [Posttranslational	100.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.81
COG4784	479	Putative Zn-dependent protease [General function p	99.77
COG0501	302	HtpX Zn-dependent protease with chaperone function	99.46
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	99.46
PRK03982	288	heat shock protein HtpX; Provisional	99.33
PRK02870	336	heat shock protein HtpX; Provisional	99.31
PRK01345	317	heat shock protein HtpX; Provisional	99.3
PRK03001	283	M48 family peptidase; Provisional	99.24
PRK03072	288	heat shock protein HtpX; Provisional	99.23
PRK04897	298	heat shock protein HtpX; Provisional	99.22
PRK05457	284	heat shock protein HtpX; Provisional	99.18
PRK02391	296	heat shock protein HtpX; Provisional	99.17
PRK01265	324	heat shock protein HtpX; Provisional	99.14
KOG2719	428	consensus Metalloprotease [General function predic	97.15
PF13203	292	DUF2201_N: Putative metallopeptidase domain	96.46
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	96.07
PF04228	292	Zn_peptidase: Putative neutral zinc metallopeptida	95.19
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	94.48
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	92.71
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	92.37
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	91.22
smart00731	146	SprT SprT homologues. Predicted to have roles in t	90.29
PRK04351	149	hypothetical protein; Provisional	89.87
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	86.76
COG1451	223	Predicted metal-dependent hydrolase [General funct	86.21
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	85.48
COG4219	337	MecR1 Antirepressor regulating drug resistance, pr	84.83
cd04279	156	ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM	84.63
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	84.39
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	84.37
COG2321	295	Predicted metalloprotease [General function predic	83.24
cd04276	197	ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MM	82.6
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	82.59
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	82.46
COG3590	654	PepO Predicted metalloendopeptidase [Posttranslati	81.43
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	80.31

>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-56  Score=425.48  Aligned_cols=244  Identities=27%  Similarity=0.417  Sum_probs=224.1

Q ss_pred             ChhhhhhHHHHHHHhh-cccCCCCCCCcccccc-ccccCC----CCCcccccCCcccceeeccccccccCCCCCCCCcce
Q 020771            1 MAYYRRAKAALDAFRN-LSSKAVPKSPVQESCS-RVYSNG----SANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRY   74 (321)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   74 (321)
                      |.|||+.|+.+|.+++ ++++|.|++....+.+ .+.++.    .+...+.+.|++++.+.-+.++..-+|||.+.+.+|
T Consensus        44 ~~~~~~~~~~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v~l~~~~~s~Rn~Ng~~y~rFqsnp~~y  123 (424)
T KOG2661|consen   44 HFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLLPLSPASIRNINGHTYPRFQSNPVPY  123 (424)
T ss_pred             eeeeeecchhcccccccCCccceecccccceehhhhhhccchhhhhcccccccccccchhhhhccCccccchhhcCCccH
Confidence            7899999999999999 9999999999877776 333322    445578899999999999999999999999999999


Q ss_pred             eEeecceeeeeccCCCCccccCCchhHHHHHHHHHHHHHHHhhccCccCCccchhccCCCHHHHHHHHHHHHHHHHHHhc
Q 020771           75 YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFK  154 (321)
Q Consensus        75 y~~~~~~~~hf~~rg~r~w~~~~r~~~~~v~vg~g~~~~~y~~~lEtvP~TgR~rfillS~~~E~~Lgeq~y~qil~e~~  154 (321)
                      |+.+++.|+||+|++.-+|++|+|++++++++|+.++++|||+|+|++|+|||+||+++|+++|..||+.+|+++++|++
T Consensus       124 s~~~r~~~~sfkpn~~dk~f~n~rk~f~~lf~G~~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq  203 (424)
T KOG2661|consen  124 SLMIRKWWQSFKPNKKDKVFENIRKNFWKLFLGLLLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQ  203 (424)
T ss_pred             HHHHHHHHHhcCCCCccchhhhHHHHHHHHHhhccceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999876677899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHhcccccccccccCCCCccccccccchhhhhHHhhhhcccccccccCcccccccc
Q 020771          155 GKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI  234 (321)
Q Consensus       155 ~kiLP~~hp~s~rVr~Ia~rIi~al~~~l~~~~~~~~~gy~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l  234 (321)
                      ++|||+.||++.+|++|+.+||++++.                                                     
T Consensus       204 ~~mLp~~hp~sl~V~~vlk~iIea~~~-----------------------------------------------------  230 (424)
T KOG2661|consen  204 NDMLPEKHPRSLAVKEVLKHIIEANKD-----------------------------------------------------  230 (424)
T ss_pred             CccCCcCCchhhHHHHHHHHHHHHhcc-----------------------------------------------------
Confidence            999999999999999999999998520                                                     


Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcc
Q 020771          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRI  314 (321)
Q Consensus       235 l~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~r  314 (321)
                                           ...+++..|+++||+||.+||||+|||+|||+||+|..|++||+||+|||||+||.++|
T Consensus       231 ---------------------~~slsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVar  289 (424)
T KOG2661|consen  231 ---------------------VPSLSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVAR  289 (424)
T ss_pred             ---------------------CCcccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHHHH
Confidence                                 01256789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 020771          315 CGLP  318 (321)
Q Consensus       315 H~l~  318 (321)
                      |+.+
T Consensus       290 H~AE  293 (424)
T KOG2661|consen  290 HAAE  293 (424)
T ss_pred             HHHH
Confidence            9853

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.81  E-value=6.6e-20  Score=183.66  Aligned_cols=116  Identities=27%  Similarity=0.313  Sum_probs=94.1

Q ss_pred             ccCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHHHhcccccccccccCCCCcccc
Q 020771          121 TVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD  200 (321)
Q Consensus       121 tvP~TgR~rfillS~~~E~~Lgeq~y~qil~e~~~kiLP~~hp~s~rVr~Ia~rIi~al~~~l~~~~~~~~~gy~~~~~~  200 (321)
                      ..|.+|....-.+|+++|..+|...+.|+..+  .                                             
T Consensus        32 ~lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~--~---------------------------------------------   64 (484)
T COG4783          32 LLPDIGVSAGSTLSPAQEVALGDPANAQLRGS--V---------------------------------------------   64 (484)
T ss_pred             hcchhhhhhhhcCCHHHHHHhhHHHHHHhccC--C---------------------------------------------
Confidence            46888999999999999999999877766543  1                                             


Q ss_pred             ccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeC
Q 020771          201 FVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP  280 (321)
Q Consensus       201 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ll~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalP  280 (321)
                                                      +++.||++++|++.  +..++...+++++.+++|++|+|+.+||||+|
T Consensus        65 --------------------------------~~i~D~el~~yv~~--~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA~~  110 (484)
T COG4783          65 --------------------------------PLIRDPELEEYVNS--LGQRLAAAADLVKTPFTFFLVNDDSINAFATP  110 (484)
T ss_pred             --------------------------------CCcCCHHHHHHHHH--HHHHHHHhcCCCCCCeEEEEecCCccchhhcC
Confidence                                            23444445555542  12244444556788999999999999999999


Q ss_pred             CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          281 GGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       281 gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      ||.|+|+||||-..+||+|||+||||||||+..+|..
T Consensus       111 Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~a  147 (484)
T COG4783         111 GGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLA  147 (484)
T ss_pred             CceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHH
Confidence            9999999999999999999999999999999999964

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=99.77  E-value=7.6e-19  Score=170.81  Aligned_cols=121  Identities=24%  Similarity=0.350  Sum_probs=100.2

Q ss_pred             hccCccCCccchhccCCCHHHHHH-HHHHHHHHHHHHhcCCCCCCCChhH-HHHHHHHHHHHHHHHhcccccccccccCC
Q 020771          117 GNLETVPYTKRTHFVLLSKAVERQ-LGESQFQQMKAAFKGKILPAIHPDS-VRVRLIAKDIIEALQRGLKHETVWSDMGY  194 (321)
Q Consensus       117 ~~lEtvP~TgR~rfillS~~~E~~-Lgeq~y~qil~e~~~kiLP~~hp~s-~rVr~Ia~rIi~al~~~l~~~~~~~~~gy  194 (321)
                      ..|...|-|+-.-+..+++.++.. ||.++-..|+++|++..   +||-. +.|.+|+.++.                  
T Consensus        20 ~~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY---~D~Kler~Vari~g~lt------------------   78 (479)
T COG4784          20 YESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEY---RDPKLERMVARIVGALT------------------   78 (479)
T ss_pred             cccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCcc---CCHHHHHHHHHHHhHhh------------------
Confidence            367778999999999999988766 99999999999998765   24443 23444443332                  


Q ss_pred             CCccccccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCC
Q 020771          195 ASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVI  274 (321)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ll~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~  274 (321)
                                                                                  ..++-+...+.|.|+|+|.+
T Consensus        79 ------------------------------------------------------------~~S~~p~q~YriTilnSP~I   98 (479)
T COG4784          79 ------------------------------------------------------------AVSENPQQTYRITILNSPNI   98 (479)
T ss_pred             ------------------------------------------------------------hhccCCCceEEEEEecCCCc
Confidence                                                                        22344677899999999999


Q ss_pred             ceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCCC
Q 020771          275 NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       275 NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      |||++|||.|+|+.|||..+.++.|+|+||+||||||..+|+++
T Consensus        99 NAFALPGGYlYitRGLlAland~sEvAAVl~HEmgHVtAnHgi~  142 (479)
T COG4784          99 NAFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQ  142 (479)
T ss_pred             cccccCCceEEEehhHHHHcCCHHHHHHHHHhhhhheecchhHH
Confidence            99999999999999999999999999999999999999999975

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.7e-14  Score=131.21  Aligned_cols=57  Identities=35%  Similarity=0.529  Sum_probs=53.1

Q ss_pred             CCCeEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCCC
Q 020771          261 GLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       261 ~~~w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      ...|+++|++++.+||||+|+    |.|+|++|||+.+ |+|||++|||||+||+.++|++.
T Consensus       115 ~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~  175 (302)
T COG0501         115 PHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLV  175 (302)
T ss_pred             CCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHH
Confidence            457999999999999999998    7999999999977 99999999999999999999863

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=99.46  E-value=8.9e-14  Score=123.55  Aligned_cols=78  Identities=29%  Similarity=0.394  Sum_probs=59.2

Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeCCCe---EEEcHhHHhhcCCHHHHHHHHHHHHHhh
Q 020771          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLLEHFRTDAEIATIIGHEPRGL  311 (321)
Q Consensus       235 l~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalPgG~---I~V~tGLL~~~~~edeLAaVLaHEiaHv  311 (321)
                      .+++++++.++.      +++..+....+++++|++++.+||||+|+|.   |+|++||+..+ |+|||++|||||+||+
T Consensus        28 ~~~~~L~~~v~~------l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHElgH~  100 (226)
T PF01435_consen   28 LEDPELRRIVEE------LARRAGLGIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHELGHI  100 (226)
T ss_dssp             -HHHHHHHHHHH------HHHHHHCTSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH------HHHHhcCCCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHHHHH
Confidence            345666666653      2233333445689999999999999999999   99999999665 9999999999999999


Q ss_pred             hcccCCCC
Q 020771          312 QRICGLPF  319 (321)
Q Consensus       312 ~~rH~l~~  319 (321)
                      ..+|....
T Consensus       101 ~~~h~~~~  108 (226)
T PF01435_consen  101 KHRHILKS  108 (226)
T ss_dssp             HTTHCCCC
T ss_pred             HcCCcchH
Confidence            99998764

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK03982 heat shock protein HtpX; Provisional

Probab=99.33  E-value=2.7e-12  Score=121.77  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=58.1

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeC----CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh
Q 020771          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ  312 (321)
Q Consensus       237 D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalP----gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~  312 (321)
                      +|++++.++.      ++...+++  ..+++|++++.+|||+++    +|.|+|++||++.+ |+|||++|||||+||+.
T Consensus        67 ~p~L~~~v~~------la~~~g~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~  137 (288)
T PRK03982         67 APELYRIVER------LAERANIP--KPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIK  137 (288)
T ss_pred             hHHHHHHHHH------HHHHcCCC--CCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            5666666553      23344443  348999999999999994    46789999999999 89999999999999999


Q ss_pred             cccCC
Q 020771          313 RICGL  317 (321)
Q Consensus       313 ~rH~l  317 (321)
                      ++|.+
T Consensus       138 ~~h~~  142 (288)
T PRK03982        138 NRDTL  142 (288)
T ss_pred             cCCHH
Confidence            99974

>PRK02870 heat shock protein HtpX; Provisional

Probab=99.31  E-value=3.9e-12  Score=124.19  Aligned_cols=74  Identities=19%  Similarity=0.305  Sum_probs=59.2

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEe----CCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhh
Q 020771          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEPRGL  311 (321)
Q Consensus       236 ~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfal----PgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv  311 (321)
                      +++++.+.++.      ++...+++ ..++++|++++.+||||+    |++.|+|++|||+.+ |+|||++|||||+||+
T Consensus       113 ~~~~L~~~ve~------La~~ag~p-~~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHi  184 (336)
T PRK02870        113 QERQLYNVVEE------LLVAAGLR-FMPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHI  184 (336)
T ss_pred             hhHHHHHHHHH------HHHHcCCC-CCCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHH
Confidence            45566665543      23333432 347999999999999999    478999999999999 8999999999999999


Q ss_pred             hcccCC
Q 020771          312 QRICGL  317 (321)
Q Consensus       312 ~~rH~l  317 (321)
                      .++|..
T Consensus       185 k~~di~  190 (336)
T PRK02870        185 RHGDIR  190 (336)
T ss_pred             HcccHH
Confidence            999863

>PRK01345 heat shock protein HtpX; Provisional

Probab=99.30  E-value=4e-12  Score=122.89  Aligned_cols=73  Identities=21%  Similarity=0.283  Sum_probs=58.5

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh
Q 020771          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ  312 (321)
Q Consensus       237 D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~  312 (321)
                      +|++.+.++.      ++...+++  ..+++|++++.+|||+++.    +.|+|++|||+.+ |+|||++||||||||+.
T Consensus        66 ~p~L~~~v~~------La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~  136 (317)
T PRK01345         66 APELYRMVRD------LARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAHELAHVK  136 (317)
T ss_pred             CHHHHHHHHH------HHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            4556665543      34445554  3589999999999999953    4799999999998 79999999999999999


Q ss_pred             cccCCC
Q 020771          313 RICGLP  318 (321)
Q Consensus       313 ~rH~l~  318 (321)
                      ++|.+.
T Consensus       137 ~~d~~~  142 (317)
T PRK01345        137 NRDTLT  142 (317)
T ss_pred             cCCHHH
Confidence            999753

>PRK03001 M48 family peptidase; Provisional

Probab=99.24  E-value=1.3e-11  Score=116.83  Aligned_cols=53  Identities=26%  Similarity=0.335  Sum_probs=48.7

Q ss_pred             eEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       264 w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      .+++|++++.+|||+++.    +.|+|++|||+.+ |+|||++|||||+||+.++|..
T Consensus        85 p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~  141 (283)
T PRK03001         85 PKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDIL  141 (283)
T ss_pred             CeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChH
Confidence            489999999999999974    3599999999999 8999999999999999999975

>PRK03072 heat shock protein HtpX; Provisional

Probab=99.23  E-value=1.3e-11  Score=117.77  Aligned_cols=73  Identities=15%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhh
Q 020771          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGL  311 (321)
Q Consensus       236 ~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv  311 (321)
                      +||++.+.++.      ++...+++  ..+++|++++.+|||+++.    +.|+|++||++.+ |+|||++|||||+||+
T Consensus        68 ~~p~L~~~v~~------la~~~g~p--~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi  138 (288)
T PRK03072         68 QAPAMYRIVRE------LSTAARQP--MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHV  138 (288)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHH
Confidence            56777776653      34445554  4589999999999999952    2499999999999 8999999999999999


Q ss_pred             hcccCC
Q 020771          312 QRICGL  317 (321)
Q Consensus       312 ~~rH~l  317 (321)
                      .++|.+
T Consensus       139 ~~~d~~  144 (288)
T PRK03072        139 YNRDIL  144 (288)
T ss_pred             hcCCHH
Confidence            999975

>PRK04897 heat shock protein HtpX; Provisional

Probab=99.22  E-value=2.1e-11  Score=116.66  Aligned_cols=73  Identities=21%  Similarity=0.294  Sum_probs=59.2

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeC----CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhh
Q 020771          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEPRGL  311 (321)
Q Consensus       236 ~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalP----gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv  311 (321)
                      ++|++.+.++.      ++...+++  ..++++++++.+|||+++    ++.|+|++|||+.+ ++|||++|||||+||+
T Consensus        78 ~~p~L~~~v~~------la~~~gip--~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi  148 (298)
T PRK04897         78 EAPELWHIVED------MAMVAQIP--MPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEISHI  148 (298)
T ss_pred             hhHHHHHHHHH------HHHHcCCC--CCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHHHHH
Confidence            45666666653      34445554  358999999999999997    35799999999999 8999999999999999


Q ss_pred             hcccCC
Q 020771          312 QRICGL  317 (321)
Q Consensus       312 ~~rH~l  317 (321)
                      .++|..
T Consensus       149 ~~~d~~  154 (298)
T PRK04897        149 RNYDIR  154 (298)
T ss_pred             hcCCHH
Confidence            999964

>PRK05457 heat shock protein HtpX; Provisional

Probab=99.18  E-value=4.2e-11  Score=114.13  Aligned_cols=61  Identities=25%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             ccccCCCCCCeEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          254 SATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       254 ~~~s~l~~~~w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      +...+++  ..+++|++++.+|||+++.    +.|+|++|||+.+ |+|||++|||||+||+.++|..
T Consensus        87 a~~~g~p--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~  151 (284)
T PRK05457         87 ARQAGIG--MPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMV  151 (284)
T ss_pred             HHhCCCC--CCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHH
Confidence            3444544  4579999999999999973    3589999999999 8999999999999999999964

>PRK02391 heat shock protein HtpX; Provisional

Probab=99.17  E-value=4.6e-11  Score=114.54  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=58.1

Q ss_pred             chHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhh
Q 020771          236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGL  311 (321)
Q Consensus       236 ~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv  311 (321)
                      ++|++.+.++.      ++...+.+  ..+++|++++.+|||+++.    +.|+|++||++.+ |+|||.+|||||+||+
T Consensus        74 ~~p~L~~~v~~------la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlaHElgHi  144 (296)
T PRK02391         74 EYPELHAMVER------LCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLAHELSHV  144 (296)
T ss_pred             hCHHHHHHHHH------HHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHHHHHHHH
Confidence            35666666543      33444544  2489999999999999963    3589999999999 7999999999999999


Q ss_pred             hcccCC
Q 020771          312 QRICGL  317 (321)
Q Consensus       312 ~~rH~l  317 (321)
                      .++|.+
T Consensus       145 ~~~di~  150 (296)
T PRK02391        145 KNRDVA  150 (296)
T ss_pred             HcCCHH
Confidence            999974

>PRK01265 heat shock protein HtpX; Provisional

Probab=99.14  E-value=7.9e-11  Score=114.61  Aligned_cols=72  Identities=22%  Similarity=0.280  Sum_probs=58.1

Q ss_pred             hHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeC----CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh
Q 020771          237 DKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ  312 (321)
Q Consensus       237 D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalP----gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~  312 (321)
                      ++++.+-++.      ++...+++  ..+++|++++.+||||.+    ++.|+|++|||+.+ |+|||.+|||||+||+.
T Consensus        82 ~~~L~~~v~~------la~~~g~~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHik  152 (324)
T PRK01265         82 YGWLYSIVAE------VAKYNGIR--VPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAGHELGHLK  152 (324)
T ss_pred             cHHHHHHHHH------HHHHcCCC--CCeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHHHHHHHHH
Confidence            4556655543      33444554  458999999999999973    56899999999999 89999999999999999


Q ss_pred             cccCC
Q 020771          313 RICGL  317 (321)
Q Consensus       313 ~rH~l  317 (321)
                      ++|..
T Consensus       153 ~~d~~  157 (324)
T PRK01265        153 HRDVE  157 (324)
T ss_pred             cccHH
Confidence            99974

>KOG2719 consensus Metalloprotease [General function prediction only]

Probab=97.15  E-value=0.00041  Score=70.24  Aligned_cols=54  Identities=20%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             EEEEEeC----CCCceEEeCC---CeEEEcHhHHh-hc-CCHHHHHHHHHHHHHhhhcccCCC
Q 020771          265 EVLVVNE----PVINAFCLPG---GKIVVFTGLLE-HF-RTDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       265 ~v~Vv~~----~~~NAfalPg---G~I~V~tGLL~-~~-~~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      .++|++.    ...||+-.+=   -.|++|.-|+. .. -|+||++||+|||+||-.++|.++
T Consensus       236 k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~~H~~K  298 (428)
T KOG2719|consen  236 KYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKLNHVLK  298 (428)
T ss_pred             EEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHhhHHHHhhHHH
Confidence            5677772    3589998864   36999999993 33 389999999999999999999753

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=96.46  E-value=0.0043  Score=58.78  Aligned_cols=51  Identities=16%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             EEEEeCCCCceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          266 VLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       266 v~Vv~~~~~NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      +.++.++.+..+++-|..|+++-..+..+ +.+|+.+||.||+-|++.+|..
T Consensus        27 l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~   77 (292)
T PF13203_consen   27 LPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPW   77 (292)
T ss_pred             CeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchh
Confidence            44555888899999999999999999888 7999999999999999999974

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.07  E-value=0.007  Score=57.37  Aligned_cols=51  Identities=24%  Similarity=0.240  Sum_probs=40.7

Q ss_pred             EEEEeCCC-CceEEeCC--CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          266 VLVVNEPV-INAFCLPG--GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       266 v~Vv~~~~-~NAfalPg--G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      +.++.++. ..+|+++-  .+|++..++++.+ +++|+..||.||++|+.++|.+
T Consensus       160 ~~i~~s~~i~sP~~~G~~~p~I~lP~~~~~~~-~~~el~~il~HEl~Hikr~D~~  213 (299)
T PF05569_consen  160 IRIRVSSGISSPFVFGFLRPVIVLPESLLEDL-SEEELRAILLHELAHIKRRDLL  213 (299)
T ss_pred             eEEEEcCCCCCCeeecCcceEEEecCcccccc-CHHHHHHHHHHHHHHHHCCChH
Confidence            44444443 46777742  5899999999888 8999999999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases

Probab=95.19  E-value=0.039  Score=53.65  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             CCceEEeCC-CeEEEcHhHHhhcC------CHHHHHHHHHHHHHhhhccc
Q 020771          273 VINAFCLPG-GKIVVFTGLLEHFR------TDAEIATIIGHEPRGLQRIC  315 (321)
Q Consensus       273 ~~NAfalPg-G~I~V~tGLL~~~~------~edeLAaVLaHEiaHv~~rH  315 (321)
                      ..|||-+|. .+|++-+.+++.++      .+-..+.|||||.||.+...
T Consensus       136 ~~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyGHHVQ~l  185 (292)
T PF04228_consen  136 ATGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYGHHVQNL  185 (292)
T ss_pred             CCCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence            357787775 68999998876653      24456789999999987654

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=94.48  E-value=0.079  Score=41.74  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             EEEEEeCCC--CceEEeC---CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          265 EVLVVNEPV--INAFCLP---GGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       265 ~v~Vv~~~~--~NAfalP---gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      +|...+...  ...++.+   .+.|+|.+.     .++.+..++|+||+||+..+|..
T Consensus         7 ~v~~~~~~~~~~~~~~~~~~~~~~I~in~~-----~~~~~~~f~laHELgH~~~~~~~   59 (122)
T PF06114_consen    7 DVVYTDLGPKDLGGFSIPKENNPIIFINSN-----LSPERQRFTLAHELGHILLHHGD   59 (122)
T ss_dssp             EEEEE--TT--EEEETT----TTEEEEESS-----S-HHHHHHHHHHHHHHHHHHH-H
T ss_pred             EEEEEcCCCCCcCEEEEecCcCCEEEECCC-----CCHHHHHHHHHHHHHHHHhhhcc
Confidence            444444433  3444444   567887766     36888999999999999987753

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=92.71  E-value=0.09  Score=49.14  Aligned_cols=34  Identities=24%  Similarity=0.098  Sum_probs=26.0

Q ss_pred             CCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh-cccC
Q 020771          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       280 PgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~-~rH~  316 (321)
                      |++.|.| .|+-.  .+-+.++.||.|||||.+ .||+
T Consensus       116 P~~~I~I-~~~~~--~~~~~~~hvi~HEiGH~IGfRHT  150 (211)
T PF12388_consen  116 PYKFIQI-YGLSN--YSVNVIEHVITHEIGHCIGFRHT  150 (211)
T ss_pred             CCceEEE-EecCC--CchhHHHHHHHHHhhhhcccccc
Confidence            4567888 46422  267889999999999987 8885

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=92.37  E-value=0.086  Score=41.75  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=27.9

Q ss_pred             CCceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcc
Q 020771          273 VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRI  314 (321)
Q Consensus       273 ~~NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~r  314 (321)
                      ...||++ |+.|++-.|-...  +..+=..+|+||++|+...
T Consensus        37 ~A~A~T~-G~~I~f~~g~~~~--~s~~~~~llaHEl~Hv~Qq   75 (79)
T PF13699_consen   37 GARAFTV-GNDIYFAPGKYNP--DSPEGRALLAHELAHVVQQ   75 (79)
T ss_pred             CCeEEEE-CCEEEEcCCCcCC--CCCCcchhHhHHHHHHHhh
Confidence            4678888 7899997775432  2333457899999999753

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=91.22  E-value=0.56  Score=40.13  Aligned_cols=31  Identities=19%  Similarity=0.233  Sum_probs=27.8

Q ss_pred             eEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcc
Q 020771          283 KIVVFTGLLEHFRTDAEIATIIGHEPRGLQRI  314 (321)
Q Consensus       283 ~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~r  314 (321)
                      .|.++.-+++. .++++|..+|.|||+|+...
T Consensus        44 ~I~ls~~~~~~-~~~~~~~~tL~HEm~H~~~~   74 (157)
T PF10263_consen   44 EIRLSPKLLDR-NPEEELIDTLLHEMAHAAAY   74 (157)
T ss_pred             EEEECHHHHHh-hHHHHHHHHHHHHHHHHHhh
Confidence            69999999998 47999999999999999763

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>smart00731 SprT SprT homologues

Probab=90.29  E-value=0.34  Score=41.85  Aligned_cols=32  Identities=16%  Similarity=0.062  Sum_probs=28.5

Q ss_pred             CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhc
Q 020771          281 GGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQR  313 (321)
Q Consensus       281 gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~  313 (321)
                      .+.|.++.-|++.. .++.|..||.|||+|+..
T Consensus        41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~   72 (146)
T smart00731       41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAAL   72 (146)
T ss_pred             CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHH
Confidence            68899999988866 689999999999999986

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PRK04351 hypothetical protein; Provisional

Probab=89.87  E-value=0.45  Score=42.05  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             eCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh
Q 020771          279 LPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ  312 (321)
Q Consensus       279 lPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~  312 (321)
                      +....|-++.-+++.. +++.|..||.||++|+.
T Consensus        41 l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~~   73 (149)
T PRK04351         41 LKDHHIEFNPKMLEEY-GLEELIGIIKHELCHYH   73 (149)
T ss_pred             cCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHHH
Confidence            4557899999999876 79999999999999984

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=86.76  E-value=0.44  Score=40.10  Aligned_cols=22  Identities=9%  Similarity=0.010  Sum_probs=18.0

Q ss_pred             CCHHHHHHHHHHHHHhhh-cccC
Q 020771          295 RTDAEIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       295 ~~edeLAaVLaHEiaHv~-~rH~  316 (321)
                      .+...+..|+.|||||++ +.|.
T Consensus       100 ~~~~~~~~v~~HEiGHaLGL~H~  122 (154)
T PF00413_consen  100 DSGNDLQSVAIHEIGHALGLDHS  122 (154)
T ss_dssp             SSSEEHHHHHHHHHHHHTTBESS
T ss_pred             hhhhhhhhhhhhccccccCcCcC
Confidence            355678999999999997 7775

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=86.21  E-value=0.55  Score=43.92  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             eCCCCceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh-cccCCCC
Q 020771          270 NEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ-RICGLPF  319 (321)
Q Consensus       270 ~~~~~NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~-~rH~l~~  319 (321)
                      +-...=+-|.+.|.|.+.+-|.. + .++.+..|+.||++|+. ..|+-.|
T Consensus       147 ~~k~~WGScs~~~~i~~~~~l~~-~-p~~~i~YVvvHELaHLke~nHs~~F  195 (223)
T COG1451         147 NMKRRWGSCSKAGEIRFNWRLVM-A-PEEVIDYVVVHELAHLKEKNHSKRF  195 (223)
T ss_pred             eccceeeeecCCCcEEeehhhhc-C-CHHHHHHHHHHHHHHHhhhhccHHH
Confidence            34455677888887777776655 3 69999999999999997 5555444

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=85.48  E-value=1.4  Score=39.83  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=25.9

Q ss_pred             CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccC
Q 020771          282 GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICG  316 (321)
Q Consensus       282 G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~  316 (321)
                      |+|+++-  +..-.+.++|.++||||.-|+.+-..
T Consensus        49 ~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~~   81 (195)
T PF10026_consen   49 GYIFLFL--LPNDYSLEELPALIAHEYHHNCRYEQ   81 (195)
T ss_pred             CEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            5788775  45555899999999999999976443

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]

Probab=84.83  E-value=1.3  Score=44.14  Aligned_cols=50  Identities=30%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             EEEEeCC---CCceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccC
Q 020771          266 VLVVNEP---VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICG  316 (321)
Q Consensus       266 v~Vv~~~---~~NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~  316 (321)
                      +.+..++   .+-.|.++--.|++-+.+.+.+ +++|+.-|++||.+|+.++..
T Consensus       154 i~ir~s~~i~~P~v~gl~kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~  206 (337)
T COG4219         154 ILIRKSKAIDGPMVFGLVKPCIVLPADFVERL-TDEELKYIILHELSHLKRGDA  206 (337)
T ss_pred             eeEeecccCCCceeeccCcceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccH
Confidence            4444443   3445555667899999999999 899999999999999987654

>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1

Probab=84.63  E-value=0.63  Score=40.01  Aligned_cols=20  Identities=15%  Similarity=-0.031  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHhhh-cccC
Q 020771          297 DAEIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       297 edeLAaVLaHEiaHv~-~rH~  316 (321)
                      ...+..|+.|||||++ +.|.
T Consensus       101 ~~~~~~~~~HEiGHaLGL~H~  121 (156)
T cd04279         101 AENLQAIALHELGHALGLWHH  121 (156)
T ss_pred             chHHHHHHHHHhhhhhcCCCC
Confidence            5679999999999997 6665

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=84.39  E-value=1.1  Score=35.37  Aligned_cols=22  Identities=9%  Similarity=-0.086  Sum_probs=18.3

Q ss_pred             CCHHHHHHHHHHHHHhhhcccC
Q 020771          295 RTDAEIATIIGHEPRGLQRICG  316 (321)
Q Consensus       295 ~~edeLAaVLaHEiaHv~~rH~  316 (321)
                      .+++.+..||+||++|+.....
T Consensus        20 ~~~~~~~~~l~HE~~H~~~~~~   41 (128)
T PF13485_consen   20 SDEDWLDRVLAHELAHQWFGNY   41 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            5788899999999999975543

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=84.37  E-value=0.64  Score=41.26  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             EEEEEeCCCCceEEeCCCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhh-cccCCCCC
Q 020771          265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQ-RICGLPFY  320 (321)
Q Consensus       265 ~v~Vv~~~~~NAfalPgG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~-~rH~l~~~  320 (321)
                      ++.|-+...-=.-|...|.|-++.-|+..  .++-+..|+.||++|+. .+|+-.||
T Consensus       131 ~i~ir~~ksrWGsc~~~~~I~ln~~L~~~--P~~~idYVvvHEL~Hl~~~nHs~~Fw  185 (205)
T PF01863_consen  131 KIKIRDMKSRWGSCSSKGNITLNWRLVMA--PPEVIDYVVVHELCHLRHPNHSKRFW  185 (205)
T ss_pred             eEEEeehhhccccCCCCCcEEeecccccC--CccHHHHHHHHHHHHhccCCCCHHHH
Confidence            45555555555557557999999988773  68899999999999995 66765554

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>COG2321 Predicted metalloprotease [General function prediction only]

Probab=83.24  E-value=1.1  Score=43.81  Aligned_cols=42  Identities=19%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             CCceEEeCC-CeEEEcHhHHhhcC------CHHHHHHHHHHHHHhhhcc
Q 020771          273 VINAFCLPG-GKIVVFTGLLEHFR------TDAEIATIIGHEPRGLQRI  314 (321)
Q Consensus       273 ~~NAfalPg-G~I~V~tGLL~~~~------~edeLAaVLaHEiaHv~~r  314 (321)
                      ..--|-+|+ .++++...+.+.|+      .|=.-|.|+|||++|.+.+
T Consensus       133 asGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHVQn  181 (295)
T COG2321         133 ASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHVQN  181 (295)
T ss_pred             CCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHHHH
Confidence            344567775 68999999999885      4666789999999998753

>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2

Probab=82.60  E-value=1  Score=41.45  Aligned_cols=36  Identities=14%  Similarity=0.309  Sum_probs=27.7

Q ss_pred             CeEEEcHhHHhhcCC------HHHHHHHHHHHHHhhh-cccCC
Q 020771          282 GKIVVFTGLLEHFRT------DAEIATIIGHEPRGLQ-RICGL  317 (321)
Q Consensus       282 G~I~V~tGLL~~~~~------edeLAaVLaHEiaHv~-~rH~l  317 (321)
                      +.|.++++.+.....      .+-|..+++||+||.+ +.|..
T Consensus        92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lGl~hn~  134 (197)
T cd04276          92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLGLRHNF  134 (197)
T ss_pred             EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            678899998866532      3568899999999987 77753

A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=82.59  E-value=0.99  Score=38.48  Aligned_cols=21  Identities=14%  Similarity=0.034  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHhhh-cccCC
Q 020771          297 DAEIATIIGHEPRGLQ-RICGL  317 (321)
Q Consensus       297 edeLAaVLaHEiaHv~-~rH~l  317 (321)
                      .+.+-+|+.|||||++ +.|..
T Consensus        91 ~~~~~~~~~HEiGHaLGL~H~~  112 (165)
T cd04268          91 GARLRNTAEHELGHALGLRHNF  112 (165)
T ss_pred             HHHHHHHHHHHHHHHhcccccC
Confidence            4678999999999998 66654

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=82.46  E-value=3.2  Score=38.43  Aligned_cols=45  Identities=16%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             EEeCCCCceEEeCC----CeEEEcHhHHhhcCC----HHHHHHHHHHHHHhhhc
Q 020771          268 VVNEPVINAFCLPG----GKIVVFTGLLEHFRT----DAEIATIIGHEPRGLQR  313 (321)
Q Consensus       268 Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~----edeLAaVLaHEiaHv~~  313 (321)
                      ++++-.-=|++. |    ..|.+++..|....+    .+|+..||-|||.|+.+
T Consensus        57 ~~~~~~gVA~t~-gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q  109 (205)
T PF04450_consen   57 ILDDMDGVAYTS-GDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQ  109 (205)
T ss_pred             EEECCCeeEEEe-cCCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhh
Confidence            445433334444 3    689999999998853    46999999999999965

>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=81.43  E-value=0.43  Score=50.56  Aligned_cols=46  Identities=28%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             CCceEEeCCCe-EEEcHhHHh--hcC-------CHHHHHHHHHHHHHhhhcccCCC
Q 020771          273 VINAFCLPGGK-IVVFTGLLE--HFR-------TDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       273 ~~NAfalPgG~-I~V~tGLL~--~~~-------~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      .+|||.-|+-+ ||.-.+||.  .++       |=-.+-+||||||+|.--.-+.+
T Consensus       450 ~VNAYYnp~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGak  505 (654)
T COG3590         450 TVNAYYNPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAK  505 (654)
T ss_pred             HhhhhcCCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCccc
Confidence            58999999854 666666664  221       33468899999999986554444

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=80.31  E-value=11  Score=35.51  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=36.0

Q ss_pred             CeEEEEEeCCCCceEEeCC-CeEEEcHhHHhhcC--------C--------HHHHHHHHHHHHHhhh
Q 020771          263 NWEVLVVNEPVINAFCLPG-GKIVVFTGLLEHFR--------T--------DAEIATIIGHEPRGLQ  312 (321)
Q Consensus       263 ~w~v~Vv~~~~~NAfalPg-G~I~V~tGLL~~~~--------~--------edeLAaVLaHEiaHv~  312 (321)
                      +..+.+-.-.+.|||--|. ..|.+...+++.+.        +        .+-+..+|-||+||+.
T Consensus        38 ~l~i~~~~CGe~nA~ydPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAl  104 (220)
T PF14247_consen   38 DLTIRFAECGEDNAFYDPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHAL  104 (220)
T ss_pred             CeEEEEeecCCCCCccCCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3445444567899999995 67998888776442        1        2346678999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	321
3c37_A	253	X-ray Structure Of The Putative Zn-dependent Peptid		2e-04

>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase Q74d82 At The Resolution 1.7 A. Northeast Structural Genomics Consortium Target Gsr143a Length = 253

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
           VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE
Sbjct: 68  VVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHE 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	6e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253

 Score = 83.6 bits (207), Expect = 6e-19
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 254 SATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
            + +     ++   VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE
Sbjct: 54  LSGARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHE 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 3e-10
 Identities = 43/325 (13%), Positives = 85/325 (26%), Gaps = 105/325 (32%)

Query: 8   KAALDAFRNLSSKAVPKSPVQES--CSRVY-------SNGSANSAKFSSGF--YSYSCIS 56
           K   D  +++ SK      +      S          S       KF       +Y  + 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 57  QRLRNSYCNPNFNTAKRYYYVDRYH------VQHFRPRGP-----RKWLQNPRTVFIVVV 105
             ++     P+  T       DR +       ++   R       R+ L   R    V++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
            G                                         +  +  GK        +
Sbjct: 156 DG-----------------------------------------VLGS--GK--------T 164

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
                +       +Q  +  +  W ++   ++    +       + L+ L    +   T 
Sbjct: 165 WVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTS 215

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVL--VVNEPVINAF---CLP 280
              H  +  L    +Q   ++     L  +  + + L   VL  V N    NAF   C  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCL--LVLLNVQNAKAWNAFNLSC-- 266

Query: 281 GGKIVVFTGLLEHFRTDAEIATIIG 305
             KI++ T      R   ++   + 
Sbjct: 267 --KILLTT------R-FKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	99.92
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	99.6
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	98.55
3dte_A	301	IRRE protein; radiotolerance, gene regulation, met	90.07
1r1h_A	696	Neprilysin; enkephalinase, glycoprotein, metallopr	84.17
3dwb_A	670	ECE-1, endothelin-converting enzyme 1; protein, di	80.69

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=99.92  E-value=2e-25  Score=205.63  Aligned_cols=115  Identities=23%  Similarity=0.387  Sum_probs=94.4

Q ss_pred             cCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-HHHHHHHHHHHHHHHHhcccccccccccCCCCcccc
Q 020771          122 VPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD  200 (321)
Q Consensus       122 vP~TgR~rfillS~~~E~~Lgeq~y~qil~e~~~kiLP~~hp~-s~rVr~Ia~rIi~al~~~l~~~~~~~~~gy~~~~~~  200 (321)
                      +|.|||++++++|+++|.++|++.++++.++++  +  ..+|. ..+|++|++++...+                     
T Consensus         3 ~~~tgr~~~~~~s~~~e~~lg~~~~~~~~~~~~--~--~~d~~l~~~l~~l~~~l~~~~---------------------   57 (253)
T 3c37_A            3 TSMTDIKGFNMISIEQEKELGNKFAVEIEKQQQ--P--VNDPEVQRYVDKVGKRLLSGA---------------------   57 (253)
T ss_dssp             ------CCCCCCCHHHHHHHHHHHHHHHHTTCC--B--CCCHHHHHHHHHHHHHHHHTS---------------------
T ss_pred             cCCCCchhhccCCHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHHHHhC---------------------
Confidence            477999999999999999999999999987754  3  34564 678888888886431                     


Q ss_pred             ccccchhhhhHHhhhhcccccccccCcccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCCceEEeC
Q 020771          201 FVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP  280 (321)
Q Consensus       201 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ll~D~~v~~~~~~G~~~~~l~~~s~l~~~~w~v~Vv~~~~~NAfalP  280 (321)
                                                                               +.+..+|+|+|++++.+||||+|
T Consensus        58 ---------------------------------------------------------~~~~~~~~v~v~~~~~~NAfa~~   80 (253)
T 3c37_A           58 ---------------------------------------------------------RAVEFDYVFKVVKDDSVNAFAIP   80 (253)
T ss_dssp             ---------------------------------------------------------SCCCSCCEEEEECCCSCCEEEET
T ss_pred             ---------------------------------------------------------CCCCCCeEEEEEeCCCCCeeEcC
Confidence                                                                     11356899999999999999999


Q ss_pred             CCeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCCC
Q 020771          281 GGKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       281 gG~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      ||.|+|++|||+.++|+|||++||||||||+..+|.+.
T Consensus        81 gg~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H~~~  118 (253)
T 3c37_A           81 GGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTR  118 (253)
T ss_dssp             TTEEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999999999999999999753

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=2.3e-15  Score=122.57  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=50.5

Q ss_pred             CeEEEEEeCCCCceEEeCC----CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCCC
Q 020771          263 NWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       263 ~w~v~Vv~~~~~NAfalPg----G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      .++++|++++.+||||+|+    +.|+|++|||+.+ ++|||++|||||+||+..+|.+.
T Consensus        43 ~~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHElgH~~~~h~~~  101 (107)
T 3cqb_A           43 MPTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEVSHIANGDMVT  101 (107)
T ss_dssp             CCEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHHHHHHCCCHHH
Confidence            3699999999999999985    4599999999999 99999999999999999999864

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=98.55  E-value=6e-08  Score=97.52  Aligned_cols=53  Identities=28%  Similarity=0.357  Sum_probs=46.1

Q ss_pred             eEEEEEe----CCCCceEEeCC---CeEEEcHhHHhh-------------------------------------cCCHHH
Q 020771          264 WEVLVVN----EPVINAFCLPG---GKIVVFTGLLEH-------------------------------------FRTDAE  299 (321)
Q Consensus       264 w~v~Vv~----~~~~NAfalPg---G~I~V~tGLL~~-------------------------------------~~~ede  299 (321)
                      .+++|++    ++..|||+.+-   ..|++++.||+.                                     | ++||
T Consensus       250 ~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dtLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~E  328 (482)
T 4aw6_A          250 TKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGC-KNEE  328 (482)
T ss_dssp             EEEEEECGGGTBSCCCEEEEESSSCEEEEEEHHHHC------------------------------------CCC-CHHH
T ss_pred             CcEEEEeCCCCCCCCceEEEcCCCCcEEEEEchHHHhcccccccccccccccccccccccchhhcccchhhccCC-CHHH
Confidence            5899999    78899999963   369999999987                                     5 8999


Q ss_pred             HHHHHHHHHHhhhcccCC
Q 020771          300 IATIIGHEPRGLQRICGL  317 (321)
Q Consensus       300 LAaVLaHEiaHv~~rH~l  317 (321)
                      +++|||||+||+.++|.+
T Consensus       329 l~aVlaHElgH~~~~~~~  346 (482)
T 4aw6_A          329 VLAVLGHELGHWKLGHTV  346 (482)
T ss_dssp             HHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHcccHH
Confidence            999999999999999974

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A

Probab=90.07  E-value=0.34  Score=45.93  Aligned_cols=47  Identities=9%  Similarity=-0.050  Sum_probs=33.1

Q ss_pred             EEEEeCCCCceEEeCC-CeEEEcHhHHhhcCCHHHHHHHHHHHHHhhhcccCC
Q 020771          266 VLVVNEPVINAFCLPG-GKIVVFTGLLEHFRTDAEIATIIGHEPRGLQRICGL  317 (321)
Q Consensus       266 v~Vv~~~~~NAfalPg-G~I~V~tGLL~~~~~edeLAaVLaHEiaHv~~rH~l  317 (321)
                      |...+-+....+..++ ..|+|+..     .+++...+.||||+||+.++|..
T Consensus        66 V~~~~L~~~~G~~~~~~~~I~LN~~-----~~~~rqrFTLAHELGHllLh~~~  113 (301)
T 3dte_A           66 LTFMPMGQRDGAYDPEHHVILINSQ-----VRPERQRFTLAHEISHALLLGDD  113 (301)
T ss_dssp             EEEECCTTCCEEEETTTTEEEEETT-----SCHHHHHHHHHHHHHHHHHHHCH
T ss_pred             EEEEcCCCCCEEEECCCcEEEEcCC-----CChhhHHHHHHHHHHHHHhcccc
Confidence            3333333445666665 46777765     27899999999999999988753

>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*

Probab=84.17  E-value=0.66  Score=47.79  Aligned_cols=47  Identities=34%  Similarity=0.451  Sum_probs=35.9

Q ss_pred             CCCceEEeCC-CeEEEcHhHHh--hcC-------CHHHHHHHHHHHHHhhhcccCCC
Q 020771          272 PVINAFCLPG-GKIVVFTGLLE--HFR-------TDAEIATIIGHEPRGLQRICGLP  318 (321)
Q Consensus       272 ~~~NAfalPg-G~I~V~tGLL~--~~~-------~edeLAaVLaHEiaHv~~rH~l~  318 (321)
                      ..+|||-.|. ..|+|-.|+|.  ...       +=..|.+||||||+|..-..+.+
T Consensus       486 ~~vNA~Y~p~~N~I~~Pa~iLq~Pff~~~~~~a~nyg~iG~vigHEi~H~FD~~G~~  542 (696)
T 1r1h_A          486 AVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRN  542 (696)
T ss_dssp             SCSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHGGGSTTTTS
T ss_pred             cceeeEEcCcCCEEEeeHHHhCCcccCccccHHHHhhHHHHHHHHHHHHHhhhhhhe
Confidence            3699999985 68999999994  221       34568999999999987655544

>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0

Probab=80.69  E-value=0.85  Score=46.94  Aligned_cols=45  Identities=29%  Similarity=0.507  Sum_probs=34.2

Q ss_pred             CCCceEEeCC-CeEEEcHhHHh--hcC-------CHHHHHHHHHHHHHhhhcccC
Q 020771          272 PVINAFCLPG-GKIVVFTGLLE--HFR-------TDAEIATIIGHEPRGLQRICG  316 (321)
Q Consensus       272 ~~~NAfalPg-G~I~V~tGLL~--~~~-------~edeLAaVLaHEiaHv~~rH~  316 (321)
                      ..+|||-.|. ..|++-.|+|.  ...       +=..|.+||||||+|.--..+
T Consensus       463 ~~vnAyY~p~~N~I~fPa~iLq~Pff~~~~p~a~nyg~iG~vigHEi~H~FD~~G  517 (670)
T 3dwb_A          463 PMVNAYYSPTKNEIVFPAGILQAPFYTRSSPKALNFGGIGVVVGHELTHAFDDQG  517 (670)
T ss_dssp             TCSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHHTTSTTG
T ss_pred             ceeEEEeccccccccccHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhccCccc
Confidence            3699999986 67999999985  222       344788999999999864443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	87.4
d1xuca1	169	Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI	85.66
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	84.62
d2ovxa1	159	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	84.37
d1y93a1	158	Macrophage elastase (MMP-12) {Human (Homo sapiens)	83.59
d1i76a_	163	Neutrophil collagenase (MMP-8) {Human (Homo sapien	83.15
d1hy7a_	168	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	82.86
d1hv5a_	162	Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI	82.63
d1r55a_	203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	82.2
d1qiba_	161	Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}	81.16
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	80.17

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.15  Score=39.67  Aligned_cols=18  Identities=11%  Similarity=-0.049  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhhh-cccC
Q 020771          299 EIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~  316 (321)
                      -+..|+.|||||++ +.|.
T Consensus       116 ~~~~v~~HEiGHaLGL~H~  134 (169)
T d1rm8a_         116 DLFLVAVHELGHALGLEHS  134 (169)
T ss_dssp             EHHHHHHHHHHHHHTCCCC
T ss_pred             hhhhhhhhhhhhhhcCCCC
Confidence            37799999999998 7775

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.16  Score=39.96  Aligned_cols=18  Identities=11%  Similarity=-0.077  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHhhh-cccC
Q 020771          299 EIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~  316 (321)
                      .+..|+.|||||++ +.|.
T Consensus       112 ~~~~v~~HEiGHaLGL~H~  130 (169)
T d1xuca1         112 NLFLVAAHEFGHSLGLDHS  130 (169)
T ss_dssp             EHHHHHHHHHHHHHTBCCC
T ss_pred             eeeeehhhhhccccCCCCC
Confidence            45689999999998 7775

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.19  Score=39.85  Aligned_cols=18  Identities=11%  Similarity=-0.178  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHhhh-cccC
Q 020771          299 EIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~  316 (321)
                      .+..|+-|||||++ +.|.
T Consensus       113 ~~~~v~~HEiGHaLGL~H~  131 (166)
T d1mmqa_         113 NFLYAATHELGHSLGMGHS  131 (166)
T ss_dssp             EHHHHHHHHHHHHHTBCCC
T ss_pred             hhhhhhhhhhccccCCCCC
Confidence            35689999999998 7775

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=0.2  Score=39.01  Aligned_cols=18  Identities=6%  Similarity=-0.108  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHhhh-cccC
Q 020771          299 EIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~  316 (321)
                      .+..|+-|||||++ +.|.
T Consensus       110 ~~~~v~~HElGHaLGL~H~  128 (159)
T d2ovxa1         110 SLFLVAAHQFGHALGLDHS  128 (159)
T ss_dssp             EHHHHHHHHHHHHTTCCCC
T ss_pred             ceeeeehhhhcccccCCCC
Confidence            36789999999998 7775

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.29  Score=37.81  Aligned_cols=20  Identities=10%  Similarity=-0.210  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHhhh-cccCC
Q 020771          298 AEIATIIGHEPRGLQ-RICGL  317 (321)
Q Consensus       298 deLAaVLaHEiaHv~-~rH~l  317 (321)
                      ..+..|+-|||||++ +.|.-
T Consensus       105 ~~~~~~~~HEiGHaLGL~H~~  125 (158)
T d1y93a1         105 TNLFLTAVHEIGHSLGLGHSS  125 (158)
T ss_dssp             EEHHHHHHHHHHHHTTCCCCS
T ss_pred             ccHHHHhhhhhhhhcCCCCCC
Confidence            357899999999998 77763

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.31  Score=38.28  Aligned_cols=19  Identities=11%  Similarity=-0.057  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHhhh-cccCC
Q 020771          299 EIATIIGHEPRGLQ-RICGL  317 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~l  317 (321)
                      .+..|+.|||||++ +.|.-
T Consensus       111 ~~~~v~~HEiGHaLGL~H~~  130 (163)
T d1i76a_         111 NLFLVAAHEFGHSLGLAHSS  130 (163)
T ss_dssp             BHHHHHHHHHHHHHTBCCCS
T ss_pred             hheeehhhhhhhhhccCCCC
Confidence            35689999999998 77763

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=82.86  E-value=0.25  Score=38.64  Aligned_cols=19  Identities=11%  Similarity=0.011  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHhhh-cccCC
Q 020771          299 EIATIIGHEPRGLQ-RICGL  317 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~l  317 (321)
                      .+..|+-|||||++ +.|.-
T Consensus       112 ~~~~v~~HEiGHALGL~H~~  131 (168)
T d1hy7a_         112 NLFLVAAHEIGHSLGLFHSA  131 (168)
T ss_dssp             EHHHHHHHHHHHHHTBCCCS
T ss_pred             cceeeeHhhhccccCCCcCC
Confidence            36789999999998 67753

>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-3 (MMP-11)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.63  E-value=0.25  Score=39.28  Aligned_cols=17  Identities=12%  Similarity=0.032  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHhhh-cccC
Q 020771          300 IATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       300 LAaVLaHEiaHv~-~rH~  316 (321)
                      +..|+-|||||++ +.|.
T Consensus       113 ~~~v~~HEiGHaLGL~H~  130 (162)
T d1hv5a_         113 LLQVAAHEFGHVLGLQHT  130 (162)
T ss_dssp             HHHHHHHHHHHHTTCCCC
T ss_pred             hhhhhhhhhhhhccCCCC
Confidence            6789999999998 6774

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: ADAM33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.33  Score=39.75  Aligned_cols=20  Identities=15%  Similarity=-0.054  Sum_probs=15.6

Q ss_pred             CHHHHHHHHHHHHHhhh-ccc
Q 020771          296 TDAEIATIIGHEPRGLQ-RIC  315 (321)
Q Consensus       296 ~edeLAaVLaHEiaHv~-~rH  315 (321)
                      ..-..|.|+||||||.. ..|
T Consensus       128 ~~~~~a~v~AHElGH~lG~~H  148 (203)
T d1r55a_         128 LPIGAAATMAHEIGHSLGLSH  148 (203)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCC
T ss_pred             chhHHHHHHHHHHHHhcCCcc
Confidence            35667899999999986 444

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.32  Score=37.60  Aligned_cols=18  Identities=11%  Similarity=-0.042  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHhhh-cccC
Q 020771          299 EIATIIGHEPRGLQ-RICG  316 (321)
Q Consensus       299 eLAaVLaHEiaHv~-~rH~  316 (321)
                      .+..|+-|||||++ +.|.
T Consensus       108 ~~~~~~~HEiGHaLGL~H~  126 (161)
T d1qiba_         108 SLFLVAAHEFGHAMGLEHS  126 (161)
T ss_dssp             EHHHHHHHHHHHHHTCCCC
T ss_pred             hhheeeeecccccccCCCC
Confidence            36789999999998 6775

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=0.46  Score=36.57  Aligned_cols=20  Identities=10%  Similarity=-0.026  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHhhh-cccCC
Q 020771          298 AEIATIIGHEPRGLQ-RICGL  317 (321)
Q Consensus       298 deLAaVLaHEiaHv~-~rH~l  317 (321)
                      ..+..|+.|||||++ +.|.-
T Consensus       104 ~~~~~v~~HEiGHaLGL~H~~  124 (157)
T d1hfca_         104 YNLHRVAAHELGHSLGLSHST  124 (157)
T ss_dssp             CBHHHHHHHHHHHHHTCCCCS
T ss_pred             chhhhhHhhhhhhhccCCCCC
Confidence            345679999999998 77753