Citrus Sinensis ID: 020780

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHccccHHccccccccccccEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccEEEEc
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHcHHEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHcccEEcccccEEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHEEEEEEccccccccccEEEEEc
matppipiayqqelpavpdwlnkgdsawQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMafgdqllpfwgkgapalgqkylvgrarvpesthevdgktvttepfYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGafslwgggflyqwgvidysggyVIHVSSGIAGLTaaywvgprlksdkerfppnNVLLMLAGAGLlwmgwsgfnggapYAAHIASSIAILNTNVAAATSLLVWTCLDviffgkpsvIGAVQGMMTGLvcitpgagmhqrRVSIFMV
matppipiayqqelPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARvpesthevdgktvtTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVllmlagagllwmgwSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
*******IAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRV*****
*******IAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
******************DWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooo
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q84KJ7 486 Ammonium transporter 2 me yes no 0.962 0.635 0.782 1e-141
Q8S230 501 Ammonium transporter 2 me no no 0.996 0.638 0.739 1e-138
Q8S233 497 Ammonium transporter 2 me no no 0.996 0.643 0.721 1e-134
Q9M6N7 475 Ammonium transporter 2 OS yes no 0.947 0.64 0.762 1e-133
Q84KJ6 498 Ammonium transporter 3 me no no 0.981 0.632 0.705 1e-129
Q69T29 480 Ammonium transporter 3 me no no 0.993 0.664 0.708 1e-126
Q851M9 479 Ammonium transporter 3 me no no 0.981 0.657 0.683 1e-125
O26759 412 Putative ammonium transpo yes no 0.881 0.686 0.387 2e-49
O66515 423 Ammonia channel OS=Aquife yes no 0.878 0.666 0.386 1e-48
O26757 407 Putative ammonium transpo no no 0.875 0.690 0.342 7e-43
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/312 (78%), Positives = 273/312 (87%), Gaps = 3/312 (0%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY   LPAVPDWLNKGD+AWQ+TASTLVGIQSMPGL+++Y SIVKKKWAVNSAFM LYA+
Sbjct: 6   AYSASLPAVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAY 65

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
           A+ L+ WVLV +RMAFGDQLLPFWGK   AL Q YLVGRA +P + H   G    TEPFY
Sbjct: 66  ASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH---GAIPRTEPFY 122

Query: 129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
             ATLV FQF FAAIT++LLAGSVLGRMNI+AWMAF PLWL+ SYTVGAFSLWGGGFLY+
Sbjct: 123 PEATLVLFQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYR 182

Query: 189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGF 248
           WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+LLM+AG GLLWMGW+GF
Sbjct: 183 WGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGF 242

Query: 249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
           NGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPG
Sbjct: 243 NGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPG 302

Query: 309 AGMHQRRVSIFM 320
           AG+ Q   ++ M
Sbjct: 303 AGLVQTWAAVVM 314
Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function description
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function description
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description
>sp|O26757|Y661_METTH Putative ammonium transporter MTH_661 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_661 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
373501951 490 ammonium transporter [Malus hupehensis] 0.981 0.642 0.811 1e-147
356568134 486 PREDICTED: ammonium transporter 2-like [ 0.978 0.646 0.842 1e-146
356521048 486 PREDICTED: ammonium transporter 2-like [ 0.978 0.646 0.839 1e-146
373501953 490 ammonium transporter [Malus hupehensis] 0.971 0.636 0.812 1e-146
356496235 488 PREDICTED: ammonium transporter 2-like [ 0.978 0.643 0.835 1e-146
224091028 485 ammonium transporter [Populus trichocarp 0.971 0.643 0.853 1e-145
255579286 477 ammonium transporter, putative [Ricinus 0.971 0.654 0.837 1e-145
357506079 487 Ammonium transporter 3 member [Medicago 0.987 0.650 0.824 1e-144
22900886 494 amt2-like protein [Medicago truncatula] 0.987 0.641 0.824 1e-144
15799272 486 putative ammonium transporter AMT2 [Lotu 0.978 0.646 0.820 1e-144
>gi|373501951|gb|AEY75248.1| ammonium transporter [Malus hupehensis] gi|384237235|gb|AFH74972.1| ammonium transporter AMT2;1 [Malus hupehensis] gi|384237237|gb|AFH74973.1| ammonium transporter AMT2;1 [Malus hupehensis] Back     alignment and taxonomy information
 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/318 (81%), Positives = 286/318 (89%), Gaps = 3/318 (0%)

Query: 6   IPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVL 65
           I  AY +  PAVP WLNKGD+AWQ+TA+T VG+QSMPGL+I+YASIVKKKWAVNSAFM L
Sbjct: 4   ITNAYSEITPAVPPWLNKGDNAWQLTAATFVGLQSMPGLVILYASIVKKKWAVNSAFMAL 63

Query: 66  YAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG---KTV 122
           YAFAAVLICWVLV YRMAFGDQLLPFW KGAP+LGQK+L+ RA+VPESTH  DG   +T 
Sbjct: 64  YAFAAVLICWVLVGYRMAFGDQLLPFWAKGAPSLGQKFLINRAKVPESTHFHDGGLIETP 123

Query: 123 TTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG 182
           T EPFY M +LVYFQFTFAAIT++LLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWG
Sbjct: 124 TVEPFYPMVSLVYFQFTFAAITLVLLAGSVLGRMNIKAWMAFVPLWLLFSYTVGAFSLWG 183

Query: 183 GGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLW 242
           GGFLY WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLML GAG+LW
Sbjct: 184 GGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLCGAGMLW 243

Query: 243 MGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGL 302
           MGWSGFNGGAPYAA++ + IA+LNTN+ AATSLLVWT LDV+FFGKPSVIGAVQGMMTGL
Sbjct: 244 MGWSGFNGGAPYAANVIAPIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGL 303

Query: 303 VCITPGAGMHQRRVSIFM 320
           VCITPGAG+ Q   +I M
Sbjct: 304 VCITPGAGLVQSWAAILM 321

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356568134|ref|XP_003552268.1| PREDICTED: ammonium transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356521048|ref|XP_003529170.1| PREDICTED: ammonium transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|373501953|gb|AEY75249.1| ammonium transporter [Malus hupehensis] Back     alignment and taxonomy information
>gi|356496235|ref|XP_003516974.1| PREDICTED: ammonium transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224091028|ref|XP_002309151.1| ammonium transporter [Populus trichocarpa] gi|222855127|gb|EEE92674.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579286|ref|XP_002530488.1| ammonium transporter, putative [Ricinus communis] gi|223529945|gb|EEF31872.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357506079|ref|XP_003623328.1| Ammonium transporter 3 member [Medicago truncatula] gi|355498343|gb|AES79546.1| Ammonium transporter 3 member [Medicago truncatula] Back     alignment and taxonomy information
>gi|22900886|gb|AAN06953.1| amt2-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15799272|gb|AAL08212.1| putative ammonium transporter AMT2 [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
UNIPROTKB|Q84KJ7 486 AMT2-1 "Ammonium transporter 2 0.962 0.635 0.743 2.1e-125
TAIR|locus:2042917 475 AMT2 "ammonium transporter 2" 0.947 0.64 0.717 1e-123
TIGR_CMR|CHY_0073 438 CHY_0073 "ammonium transporter 0.626 0.458 0.357 2e-41
TIGR_CMR|CPS_3995 445 CPS_3995 "ammonium transporter 0.545 0.393 0.4 4.1e-41
UNIPROTKB|P69681 428 amtB "AmtB" [Escherichia coli 0.551 0.413 0.389 1.4e-40
TIGR_CMR|DET_1125 408 DET_1125 "ammonium transporter 0.856 0.674 0.336 3.5e-36
TIGR_CMR|SPO_2093 431 SPO_2093 "ammonium transporter 0.841 0.626 0.319 3.6e-34
TIGR_CMR|GSU_0940 489 GSU_0940 "ammonium transporter 0.943 0.619 0.308 1.3e-31
POMBASE|SPCPB1C11.01 497 amt1 "ammonium transporter Amt 0.853 0.551 0.306 8.9e-30
DICTYBASE|DDB_G0277503 463 amtA "ammonium transporter" [D 0.866 0.600 0.286 1.5e-28
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 232/312 (74%), Positives = 260/312 (83%)

Query:     9 AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
             AY   LPAVPDWLNKGD+AWQ+TASTLVGIQSMPGL+++Y SIVKKKWAVNSAFM LYA+
Sbjct:     6 AYSASLPAVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAY 65

Query:    69 AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
             A+ L+ WVLV +RMAFGDQLLPFWGK   AL Q YLVGRA +P + H   G    TEPFY
Sbjct:    66 ASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH---GAIPRTEPFY 122

Query:   129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
               ATLV FQF FAAIT++LLAGSVLGRMNI+AWMAF PLWL+ SYTVGAFSLWGGGFLY+
Sbjct:   123 PEATLVLFQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYR 182

Query:   189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGF 248
             WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERF PNN+              +GF
Sbjct:   183 WGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGF 242

Query:   249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
             NGGAPYAA+IA+S+A+LNTNV AATSLL+WTCLDVIFF KPSVIGAVQGMMTGLVCITPG
Sbjct:   243 NGGAPYAANIAASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPG 302

Query:   309 AGMHQRRVSIFM 320
             AG+ Q   ++ M
Sbjct:   303 AGLVQTWAAVVM 314
GO:0005886 "plasma membrane" evidence=TAS
GO:0015696 "ammonium transport" evidence=IGI
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0073 CHY_0073 "ammonium transporter" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0940 GSU_0940 "ammonium transporter" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277503 amtA "ammonium transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M6N7AMT2_ARATHNo assigned EC number0.76280.94700.64yesno
Q84KJ7AMT21_ORYSJNo assigned EC number0.78200.96260.6358yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
TIGR00836 403 TIGR00836, amt, ammonium transporter 1e-77
COG0004 409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 2e-69
PRK10666 428 PRK10666, PRK10666, ammonium transporter; Provisio 2e-49
pfam00909 399 pfam00909, Ammonium_transp, Ammonium Transporter F 4e-41
TIGR03644 404 TIGR03644, marine_trans_1, probable ammonium trans 8e-24
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  242 bits (620), Expect = 1e-77
 Identities = 102/287 (35%), Positives = 148/287 (51%), Gaps = 16/287 (5%)

Query: 27  AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD 86
           AW + A+ LV     PG  ++YA +V+ K  +N     L  FA   + W L  Y +AFG+
Sbjct: 2   AWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGE 60

Query: 87  QLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVI 146
              P  G      G   L                 ++            FQ  FAAI   
Sbjct: 61  DN-PINGFIGT--GGFGLKNFL---------YPGKISLAGTLPDLLFFLFQMMFAAIAAT 108

Query: 147 LLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSG 205
           +++G+V  RM   A++ F  LW    Y   A  +WG GG+LY+ GV+D++GG V+H+  G
Sbjct: 109 IISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGG 168

Query: 206 IAGLTAAYWVGPRLKSDKE--RFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIA 263
           +AGL AA  +GPR+          P+NV L++ G  +LW GW GFN G+  AA+  ++ A
Sbjct: 169 VAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYA 228

Query: 264 ILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAG 310
            +NTN+AAA   L W  +D +  GKP+++GA  G++ GLV ITPG G
Sbjct: 229 AVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCG 275

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
COG0004 409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682 500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666 428 ammonium transporter; Provisional 100.0
TIGR00836 403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644 404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909 399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796 442 consensus Ammonium transporter RHBG [Intracellular 99.97
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 85.36
TIGR00836403 amt ammonium transporter. The mechanism of energy 84.7
PF01891205 CbiM: Cobalt uptake substrate-specific transmembra 81.44
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-83  Score=618.97  Aligned_cols=285  Identities=37%  Similarity=0.679  Sum_probs=264.4

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcchh
Q 020780           21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG  100 (321)
Q Consensus        21 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~~~  100 (321)
                      +|+.|+.|+|+|+.|| ++|||||+|+|+|++|+||++|+++||++++++++++|+++||+++||++.++|+|+...+  
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~--   77 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQF--   77 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHH--
Confidence            4789999999999999 9999999999999999999999999999999999999999999999998668999997542  


Q ss_pred             hhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhccccce
Q 020780          101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL  180 (321)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ahwv  180 (321)
                        ++.+.. . ++    +    +...++|++++++||++||++|++|++|+++||+|+++|++|+++|.+++|||++||+
T Consensus        78 --~~~~~~-~-~~----~----~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWv  145 (409)
T COG0004          78 --FLNGLG-F-AA----V----AGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWV  145 (409)
T ss_pred             --hccCcc-c-cc----c----CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeE
Confidence              111110 0 00    0    0113589999999999999999999999999999999999999999999999999999


Q ss_pred             e-cchhhhccCceeecCceeehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCccccccccc
Q 020780          181 W-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA  259 (321)
Q Consensus       181 W-~~GwL~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgpR~~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~~  259 (321)
                      | ++|||.++|++|||||+|||+.+|+.||++++++|||+++.+++++|||++++++|+.+||+||||||+||++..+.+
T Consensus       146 Wggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~  225 (409)
T COG0004         146 WGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV  225 (409)
T ss_pred             ecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhh
Confidence            9 677999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHhCCCcHHHhHHHhhhccccccCCCCCcccchheee
Q 020780          260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFM  320 (321)
Q Consensus       260 ~~~a~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~laGlVaita~~~~v~p~~A~ii  320 (321)
                      +..+++||++|+++++++|++++++++||+|+..++||++||||+|||+|++|+||+|++|
T Consensus       226 a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~ii  286 (409)
T COG0004         226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALII  286 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
2npe_A 424 An Unusual Twin-his Arrangement In The Pore Of Ammo 1e-34
1xqe_A 418 The Mechanism Of Ammonia Transport Based On The Cry 1e-34
2nmr_A 424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-34
2npg_A 424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-34
2ns1_A 412 Crystal Structure Of The E. Coli Ammonia Channel Am 2e-34
2nuu_A 415 Regulating The Escherichia Coli Ammonia Channel: Th 1e-33
2now_A 424 An Unusual Twin-His Arrangement In The Pore Of Ammo 1e-33
3c1i_A 424 Substrate Binding, Deprotonation And Selectivity At 2e-33
3c1h_A 424 Substrate Binding, Deprotonation And Selectivity At 2e-33
2npd_A 424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-33
2npc_A 424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-33
2npk_A 424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-33
3c1j_A 424 Substrate Binding, Deprotonation And Selectivity At 2e-32
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 1e-31
2b2f_A 399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 1e-27
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 149/296 (50%), Gaps = 20/296 (6%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAG 310
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1u7g_A385 Probable ammonium transporter; right handed helica 5e-73
2b2h_A 399 AMT-1, ammonium transporter; membrane protein, tra 6e-71
3b9w_A 407 Ammonium transporter family; membrane protein, amm 3e-45
3hd6_A 490 Ammonium transporter RH type C; ammonia, channel, 7e-32
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
 Score =  229 bits (586), Expect = 5e-73
 Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 17/293 (5%)

Query: 18  PDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVL 77
           P   +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+
Sbjct: 2   PAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVV 61

Query: 78  VCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQ 137
             Y +A G+    F+G     +    L                   +   Y       FQ
Sbjct: 62  YGYSLASGEGN-NFFG----NINWLMLKNIELTAVMG---------SIYQYIHVA---FQ 104

Query: 138 FTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGG 197
            +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG
Sbjct: 105 GSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGG 164

Query: 198 YVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAH 257
            V+H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+
Sbjct: 165 TVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN 224

Query: 258 IASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAG 310
             +++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G
Sbjct: 225 EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACG 277
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
2b2h_A 399 AMT-1, ammonium transporter; membrane protein, tra 100.0
3b9w_A 407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A 490 Ammonium transporter RH type C; ammonia, channel, 100.0
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
Probab=100.00  E-value=6.4e-84  Score=629.82  Aligned_cols=283  Identities=34%  Similarity=0.588  Sum_probs=263.7

Q ss_pred             ccccchHHHHHHHHHHHHHHHH-HHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcc
Q 020780           20 WLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA   98 (321)
Q Consensus        20 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~   98 (321)
                      .+|+.|+.|+|+|++|| ++|| |||+|+|+|++|+||++|+++||++++++++++||++||+++||++ ++|||+.+++
T Consensus         4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~   81 (385)
T 1u7g_A            4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL   81 (385)
T ss_dssp             CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred             ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchh
Confidence            46789999999999999 9999 9999999999999999999999999999999999999999999987 7899986542


Q ss_pred             hhhhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhcccc
Q 020780           99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF  178 (321)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ah  178 (321)
                      +    +.+.+  ++          +.++++|+..+++||++||+++++|++||++||+|+.+|++|+++|++++|||++|
T Consensus        82 ~----l~~~~--~~----------~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ah  145 (385)
T 1u7g_A           82 M----LKNIE--LT----------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAH  145 (385)
T ss_dssp             G----GTTCC--TT----------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHH
T ss_pred             h----ccCCC--Cc----------ccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhh
Confidence            1    11111  00          01124899999999999999999999999999999999999999999999999999


Q ss_pred             ceecchhhhccCceeecCceeehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCcccccccc
Q 020780          179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHI  258 (321)
Q Consensus       179 wvW~~GwL~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgpR~~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~  258 (321)
                      |+|++|||.++|++|||||++||++||++||+++++||||++|++++++|||++++++|+++||+||||||+||++..++
T Consensus       146 wvW~~GwL~~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~  225 (385)
T 1u7g_A          146 MVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE  225 (385)
T ss_dssp             HHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred             eeEcchhhhhcceeeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccc
Confidence            99999999999999999999999999999999999999999988889999999999999999999999999999998888


Q ss_pred             chhHHHHHhHHHHHHHHHHHHHHHHHHhCCCcHHHhHHHhhhccccccCCCCCcccchheee
Q 020780          259 ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFM  320 (321)
Q Consensus       259 ~~~~a~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~laGlVaita~~~~v~p~~A~ii  320 (321)
                      +++++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++|
T Consensus       226 ~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~ii  287 (385)
T 1u7g_A          226 IAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII  287 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999876
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 8e-35
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  128 bits (322), Expect = 8e-35
 Identities = 95/291 (32%), Positives = 148/291 (50%), Gaps = 17/291 (5%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
            +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+  Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +A G+    F       L    L                             V FQ +F
Sbjct: 63  SLASGEGNNFFGNINWLMLKNIELTAVM-----------------GSIYQYIHVAFQGSF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+
Sbjct: 106 ACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVV 165

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+  +
Sbjct: 166 HINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIA 225

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGM 311
           ++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G 
Sbjct: 226 ALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGY 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-76  Score=574.67  Aligned_cols=283  Identities=33%  Similarity=0.580  Sum_probs=262.3

Q ss_pred             ccccchHHHHHHHHHHHHHHHH-HHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCCCCCCCCCcc
Q 020780           20 WLNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPA   98 (321)
Q Consensus        20 ~~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~~~~~Gy~lafG~~~~~fiG~~~~~   98 (321)
                      ..|+.|+.|+++|++|| ++|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++++|+.+++
T Consensus         2 ~~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~   79 (383)
T d1u7ga_           2 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWL   79 (383)
T ss_dssp             CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTG
T ss_pred             CcCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchh
Confidence            35789999999999999 8887 8999999999999999999999999999999999999999999986 5677876543


Q ss_pred             hhhhhhccCCCCCCCccccCCccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhcccc
Q 020780           99 LGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAF  178 (321)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~lfq~~Fa~~a~~I~sGavaeR~~~~~~~i~~~l~~~~vYp~~ah  178 (321)
                      ..     ...  +.         .+.+..+|++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++|
T Consensus        80 ~~-----~~~--~~---------~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~h  143 (383)
T d1u7ga_          80 ML-----KNI--EL---------TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAH  143 (383)
T ss_dssp             GG-----TTC--CT---------TCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hc-----cCc--cc---------ccccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHh
Confidence            21     110  00         011234789999999999999999999999999999999999999999999999999


Q ss_pred             ceecchhhhccCceeecCceeehhhhhHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCcccccccc
Q 020780          179 SLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHI  258 (321)
Q Consensus       179 wvW~~GwL~~lG~~DfaGs~vVH~~gG~~gL~~a~~lgpR~~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~gs~~~~~~  258 (321)
                      |+|++|||+++|++||+||++||++||+++|++++++|||++|++++.+|||++++.+|+++||+||+|||+||+...+.
T Consensus       144 wvw~~g~l~~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~  223 (383)
T d1u7ga_         144 MVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANE  223 (383)
T ss_dssp             HHHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSH
T ss_pred             eecCCCccccCCceeccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             chhHHHHHhHHHHHHHHHHHHHHHHHHhCCCcHHHhHHHhhhccccccCCCCCcccchheee
Q 020780          259 ASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGMHQRRVSIFM  320 (321)
Q Consensus       259 ~~~~a~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~laGlVaita~~~~v~p~~A~ii  320 (321)
                      ...++.+||++|+++++++++..+++++||+|+.+++||+|||||+|||+|++++||+|++|
T Consensus       224 ~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~i  285 (383)
T d1u7ga_         224 IAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII  285 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999875