Citrus Sinensis ID: 020827

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
cHHHHHHHHHHHccccEEEEEEccccccccccEEEcccccccccccEEEEEccccccccccccEEEccccccEEEccccccccccccEEEEEEEEEEcccccccccEEEEEccccccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccEEEEEEcccccEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEc
cHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccEEccccEEEEEEccccccccccccEEEEEEEEEccccccccEEEEEccccccHHHccccccEEEEEccccccccccEEEEEEEEcccccEEEEEccccccccEEEEEEEEcccccEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccEEcccccEEEEEEEEc
MMLKLLVLFLFFQISVSEIFFeerfddgwrsrwvisdwkrsegkagyfkhtagkwhgdpddkgiqthTDARHYAISakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQkkfggdapyslmfgpdicgtqkKHLHVILSYqgqnypikkelecetdKLTHFYTfilrpdasysilidnrerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkipyidnpgifeddpdlyvlkpikyvgIEVWQV
MMLKLLVLFLFFQISVSEIFFeerfddgwrsRWVISDWKRSEGKAGYFKhtagkwhgdpddKGIQTHTDARHYAIsakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTfilrpdasysILIDNRerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
MMlkllvlflffQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
**LKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVN***************************************************************WRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVW**
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKI**********WDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPK***********DGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
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iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
O04153424 Calreticulin-3 OS=Arabido yes no 0.987 0.747 0.791 1e-151
Q40401416 Calreticulin OS=Nicotiana N/A no 0.990 0.764 0.646 1e-117
P93508415 Calreticulin OS=Ricinus c N/A no 0.956 0.739 0.659 1e-116
O04151425 Calreticulin-1 OS=Arabido no no 0.981 0.741 0.639 1e-114
Q38858424 Calreticulin-2 OS=Arabido no no 0.990 0.75 0.630 1e-114
Q9ZPP1416 Calreticulin OS=Berberis N/A no 0.978 0.754 0.658 1e-113
O81919416 Calreticulin OS=Beta vulg N/A no 0.956 0.737 0.642 1e-112
Q9XF98421 Calreticulin OS=Prunus ar N/A no 0.940 0.717 0.660 1e-112
Q9SLY8424 Calreticulin OS=Oryza sat no no 0.947 0.716 0.632 1e-109
Q9SP22420 Calreticulin OS=Zea mays N/A no 0.943 0.721 0.621 1e-105
>sp|O04153|CALR3_ARATH Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2 Back     alignment and function desciption
 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/326 (79%), Positives = 286/326 (87%), Gaps = 9/326 (2%)

Query: 4   KLLVLFLFFQISV--------SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKW 55
           KL     FF +SV        SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW
Sbjct: 7   KLSFFCFFFLVSVLTLAPLAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKW 66

Query: 56  HGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYV 115
            GDPD+KGIQT+ DA+HYAISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YV
Sbjct: 67  PGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYV 126

Query: 116 NQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILR 175
           NQK+FGGD PYSLMFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILR
Sbjct: 127 NQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILR 186

Query: 176 PDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235
           PDASYS+L+DN+ER+ GSMYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+D
Sbjct: 187 PDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFD 246

Query: 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDN 295
           SIP+EIPD KAK+P++WDE+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDN
Sbjct: 247 SIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDN 306

Query: 296 PGIFEDDPDLYVLKPIKYVGIEVWQV 321
           P  FEDDPDLYVLK IKY GIEVWQV
Sbjct: 307 PE-FEDDPDLYVLKSIKYAGIEVWQV 331
Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1 Back     alignment and function description
>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 Back     alignment and function description
>sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 Back     alignment and function description
>sp|Q9ZPP1|CALR_BERST Calreticulin OS=Berberis stolonifera PE=2 SV=1 Back     alignment and function description
>sp|O81919|CALR_BETVU Calreticulin OS=Beta vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q9SLY8|CALR_ORYSJ Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2 Back     alignment and function description
>sp|Q9SP22|CALR_MAIZE Calreticulin OS=Zea mays GN=CRT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
255547520 423 calreticulin, putative [Ricinus communis 0.996 0.756 0.863 1e-163
224146178421 predicted protein [Populus trichocarpa] 0.996 0.760 0.847 1e-157
217074662393 unknown [Medicago truncatula] 0.990 0.809 0.825 1e-156
357507831421 Calreticulin-3 [Medicago truncatula] gi| 0.990 0.755 0.825 1e-156
356545437418 PREDICTED: calreticulin-3-like [Glycine 0.953 0.732 0.866 1e-155
255638717408 unknown [Glycine max] 0.984 0.774 0.820 1e-155
356566955421 PREDICTED: calreticulin-3-like, partial 0.984 0.750 0.823 1e-155
224093048 424 predicted protein [Populus trichocarpa] 0.993 0.752 0.819 1e-154
297735242 448 unnamed protein product [Vitis vinifera] 0.943 0.676 0.865 1e-154
356538879419 PREDICTED: calreticulin-3-like [Glycine 0.953 0.730 0.853 1e-154
>gi|255547520|ref|XP_002514817.1| calreticulin, putative [Ricinus communis] gi|223545868|gb|EEF47371.1| calreticulin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/322 (86%), Positives = 301/322 (93%), Gaps = 2/322 (0%)

Query: 1   MMLKLLVLF-LFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP 59
            ++KLL +F LF Q SV+EI FEE+FDDGW+SRWV SDWKRSEGKAG FKHTAGKW GDP
Sbjct: 12  TLIKLLPVFCLFVQFSVAEIIFEEKFDDGWQSRWVRSDWKRSEGKAGTFKHTAGKWSGDP 71

Query: 60  DDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKK 119
           DDKGIQT  DA+H+AISAKIPEFSNKNRTLV+QYSIRFEQDIECGGGYIKLLS +VNQKK
Sbjct: 72  DDKGIQTTNDAKHFAISAKIPEFSNKNRTLVLQYSIRFEQDIECGGGYIKLLSGFVNQKK 131

Query: 120 FGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179
           FGGD PYSLMFGPDICGTQKKHLHVILSYQGQNYPI+KELECETDKLTHFYTFILRPDAS
Sbjct: 132 FGGDTPYSLMFGPDICGTQKKHLHVILSYQGQNYPIRKELECETDKLTHFYTFILRPDAS 191

Query: 180 YSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPK 239
           YSILID RERDSGSMYTDWDILPP+KI+   AKKPADWDDREYIDDPNAVKPEGYD IPK
Sbjct: 192 YSILIDGRERDSGSMYTDWDILPPKKIRDTKAKKPADWDDREYIDDPNAVKPEGYDKIPK 251

Query: 240 EIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIF 299
           EIPDP A++PD+WD++E+G+W+PPKIPNPAYKGPWRPKRIKNPNYKGKWK+PYIDNP  F
Sbjct: 252 EIPDPNAREPDDWDDEENGIWRPPKIPNPAYKGPWRPKRIKNPNYKGKWKVPYIDNPE-F 310

Query: 300 EDDPDLYVLKPIKYVGIEVWQV 321
           EDDPDLYVLKPIKYVG+EVWQV
Sbjct: 311 EDDPDLYVLKPIKYVGVEVWQV 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146178|ref|XP_002325909.1| predicted protein [Populus trichocarpa] gi|222862784|gb|EEF00291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074662|gb|ACJ85691.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357507831|ref|XP_003624204.1| Calreticulin-3 [Medicago truncatula] gi|355499219|gb|AES80422.1| Calreticulin-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356545437|ref|XP_003541149.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|255638717|gb|ACU19663.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356566955|ref|XP_003551690.1| PREDICTED: calreticulin-3-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|224093048|ref|XP_002309786.1| predicted protein [Populus trichocarpa] gi|222852689|gb|EEE90236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297735242|emb|CBI17604.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538879|ref|XP_003537928.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
TAIR|locus:2201816424 CRT3 "calreticulin 3" [Arabido 0.956 0.724 0.818 1.2e-147
UNIPROTKB|P93508415 P93508 "Calreticulin" [Ricinus 0.956 0.739 0.659 1.7e-121
TAIR|locus:2195326424 CRT1b "calreticulin 1b" [Arabi 0.956 0.724 0.642 8.8e-118
TAIR|locus:2010723425 CRT1a "calreticulin 1a" [Arabi 0.947 0.715 0.649 1.8e-117
UNIPROTKB|Q9SLY8424 LOC_Os07g14270 "Calreticulin" 0.943 0.714 0.634 2.7e-116
DICTYBASE|DDB_G0283539 424 crtA "calreticulin" [Dictyoste 0.950 0.719 0.512 2.7e-93
ZFIN|ZDB-GENE-000208-17418 calr "calreticulin" [Danio rer 0.943 0.724 0.527 1.7e-91
ZFIN|ZDB-GENE-030131-9907417 calrl "calreticulin like" [Dan 0.934 0.719 0.529 3.1e-90
ZFIN|ZDB-GENE-030131-4042419 calrl2 "calreticulin, like 2" 0.934 0.715 0.512 5.9e-89
UNIPROTKB|Q7Z1E6398 crt "Calreticulin" [Bombyx mor 0.934 0.753 0.519 2.3e-87
TAIR|locus:2201816 CRT3 "calreticulin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
 Identities = 252/308 (81%), Positives = 281/308 (91%)

Query:    14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHY 73
             ++ SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW GDPD+KGIQT+ DA+HY
Sbjct:    25 LAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHY 84

Query:    74 AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
             AISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YVNQK+FGGD PYSLMFGPD
Sbjct:    85 AISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPD 144

Query:   134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
             ICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILRPDASYS+L+DN+ER+ GS
Sbjct:   145 ICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGS 204

Query:   194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
             MYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+DSIP+EIPD KAK+P++WD
Sbjct:   205 MYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWD 264

Query:   254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKY 313
             E+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDNP  FEDDPDLYVLK IKY
Sbjct:   265 EEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPE-FEDDPDLYVLKSIKY 323

Query:   314 VGIEVWQV 321
              GIEVWQV
Sbjct:   324 AGIEVWQV 331
GO:0005509 "calcium ion binding" evidence=IEA;ISS
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;IGI
GO:0009507 "chloroplast" evidence=ISM
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP
GO:0055074 "calcium ion homeostasis" evidence=IGI
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
UNIPROTKB|P93508 P93508 "Calreticulin" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2195326 CRT1b "calreticulin 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010723 CRT1a "calreticulin 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SLY8 LOC_Os07g14270 "Calreticulin" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283539 crtA "calreticulin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-17 calr "calreticulin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9907 calrl "calreticulin like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4042 calrl2 "calreticulin, like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z1E6 crt "Calreticulin" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04153CALR3_ARATHNo assigned EC number0.79140.98750.7476yesno
P18418CALR_RATNo assigned EC number0.50980.92830.7163yesno
P27797CALR_HUMANNo assigned EC number0.50650.92830.7146yesno
P52193CALR_BOVINNo assigned EC number0.50320.92830.7146yesno
Q8K3H7CALR_CRIGRNo assigned EC number0.50650.92830.7146yesno
Q23858CALR_DICDINo assigned EC number0.50310.99370.7523yesno
P14211CALR_MOUSENo assigned EC number0.51300.92830.7163yesno
P15253CALR_RABITNo assigned EC number0.50320.92830.7129yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-126
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  365 bits (939), Expect = e-126
 Identities = 160/352 (45%), Positives = 205/352 (58%), Gaps = 53/352 (15%)

Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGD-PDDKGIQTHTDARHYAI 75
           ++F E+FDD   W  RW+ S  K+ +   G +K  AGK++G    DKG+ T  DA+ YAI
Sbjct: 1   VYFFEQFDDDDLWEKRWIPSKAKKDD--DGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAI 58

Query: 76  SAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDI 134
           SAK P+ FSNK +TLVVQY ++ +Q I+CGG YIKLLS   +QK F G+ PY++MFGPDI
Sbjct: 59  SAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDI 118

Query: 135 CGTQKKHLHVIL------SYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRE 188
           CG+  K +H I        Y+ + + IKK +    DKLTH YT I+RPD ++ ILID   
Sbjct: 119 CGSDTKKVHFIFRHKPITGYKEEKHLIKKPISR-CDKLTHLYTLIIRPDNTFEILIDGEV 177

Query: 189 RDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD-SIPKEIPDPK 245
             SGS+  D+D    PP++I     KKP DWDDRE I DP A KPE +D   P+ IPDP 
Sbjct: 178 VKSGSLLEDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPN 237

Query: 246 AKKPDN-------------------WDEDEDGLWKPPKIPNPA----------------- 269
           A KP+                    WD++EDG W+ P IPNP                  
Sbjct: 238 AVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGKPPMIKNPK 297

Query: 270 YKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV 321
           YKG W+P  I NPNYKG WK   I NP  FE DP+ Y L+PI  +G E+WQV
Sbjct: 298 YKGKWKPPMIDNPNYKGVWKPRKIPNPDYFE-DPNPYNLEPIGAIGFELWQV 348

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
KOG0675 558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.9
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.88
KOG0675 558 consensus Calnexin [Posttranslational modification 99.88
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information 
Probab=100.00  E-value=8.3e-117  Score=858.33  Aligned_cols=301  Identities=52%  Similarity=1.018  Sum_probs=225.7

Q ss_pred             eeEEecCCCC--cCCCeEecccccCC---CCCccEEEeccccC-CCCCCcceeeccccchhhhhccCCC-ccCCCCceEE
Q 020827           19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV   91 (321)
Q Consensus        19 v~F~E~Fd~~--~~~rWi~S~~~k~~---~~~G~w~~~~g~~~-~~~~D~GLv~~~~ak~yaIs~kl~~-~~~~~k~LVv   91 (321)
                      |||+|+|+++  |.+|||+|++++++   .|.|+|++++|+++ +.++|+||||+++|||||||++|++ |++++++|||
T Consensus         1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv   80 (367)
T PF00262_consen    1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV   80 (367)
T ss_dssp             EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred             CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence            7999999986  99999999999874   67899999999666 5567999999999999999999998 9999999999


Q ss_pred             EEEEeeecccccCCceEEEcccccccc-cccCCCCeeEEecccccCCCCceEEEEEEeCCC-------ccccccCCcccc
Q 020827           92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ-------NYPIKKELECET  163 (321)
Q Consensus        92 QYeVK~q~~i~CGGaYIKLl~~~~d~~-~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~-------~~~~~~~~~~~~  163 (321)
                      |||||||++|+|||||||||+...++. +|+++|||+||||||+|| .+++|||||||++.       +|..++++.+.+
T Consensus        81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~  159 (367)
T PF00262_consen   81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT  159 (367)
T ss_dssp             EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred             EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence            999999999999999999999988887 999999999999999999 67789999988752       344456667889


Q ss_pred             ccccceEEEEeCCCCceEEEECceEeccCCccccCC--CCCCcccccCCCCCCCCCCCCccccCCCCCCCCCCC------
Q 020827          164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------  235 (321)
Q Consensus       164 d~~tHlYTLii~~d~t~ei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~~~KP~dWd------  235 (321)
                      |++||||||||||||||||+|||+++.+|||.+||+  ++||++|+||+++||+||||+++|+||+|+||+|||      
T Consensus       160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~  239 (367)
T PF00262_consen  160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF  239 (367)
T ss_dssp             SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred             CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence            999999999999999999999999999999999999  999999999999999999999999999999999999      


Q ss_pred             --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCcccccCcCCCCC
Q 020827          236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN  283 (321)
Q Consensus       236 --------------d~~~~I~dP~~~kP~dwd~~~~g~W~~p~i~NP------------------~ykG~W~~~~I~NP~  283 (321)
                                    +||++||||+|+||+|||+++||+|+||||+||                  +|||+|+||||+||+
T Consensus       240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~  319 (367)
T PF00262_consen  240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN  319 (367)
T ss_dssp             EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred             ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence                          679999999999999999999999999999999                  999999999999999


Q ss_pred             CCcCCCCCCCCCCCCCCCCCCCCCcCCceEEEEEeeeC
Q 020827          284 YKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV  321 (321)
Q Consensus       284 y~g~W~p~~i~np~~y~~d~~~~~~~~i~~vg~ElW~v  321 (321)
                      |+|+|+||+|+||+ |++|.+|+++.+|||||||||||
T Consensus       320 YkG~W~p~~I~NP~-y~~d~~p~~~~~i~~ig~ElW~~  356 (367)
T PF00262_consen  320 YKGEWKPRKIPNPD-YFEDPNPYNFEPIGAIGFELWQM  356 (367)
T ss_dssp             ---S----EEE-TT---SSTTTT--S-EEEEEEEEEES
T ss_pred             ccccccccccCCCc-ccCCCCccccCceeEEEEEEEec
Confidence            99999999999999 99999999999999999999997

It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
3rg0_A332 Structural And Functional Relationships Between The 4e-68
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 5e-54
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-50
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-49
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 3e-49
1hhn_A101 Calreticulin P-Domain Length = 101 2e-22
1k9c_A74 Solution Structure Of Calreticulin P-Domain Subdoma 3e-15
1k91_A37 Solution Structure Of Calreticulin P-Domain Subdoma 5e-06
3ici_C38 Crystal Structure Of Cyclophilin B In Complex With 7e-05
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (650), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/306 (44%), Positives = 191/306 (62%), Gaps = 38/306 (12%)
Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
           I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+
Sbjct: 7   IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76  SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
           SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPDIC
Sbjct: 64  SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
           G   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS+ 
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
            DWD LPP+KIK  +A KP DWD+R  IDDP   KPE                  +WD+ 
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVG 315
             G             G W+P++I NP+YKG W  P IDNP  +  D ++Y       +G
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPE-YSPDANIYAYDSFAVLG 271
Query: 316 IEVWQV 321
           +++WQV
Sbjct: 272 LDLWQV 277
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74 Back     alignment and structure
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 221-256) Length = 37 Back     alignment and structure
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With Calmegin Fragment Length = 38 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-106
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-103
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 2e-73
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 2e-04
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 3e-38
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 1e-13
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
 Score =  314 bits (806), Expect = e-106
 Identities = 130/369 (35%), Positives = 189/369 (51%), Gaps = 62/369 (16%)

Query: 13  QISVSEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQT 66
            +   E++F + FD G  S W++S  K+ +         G ++    K    P DKG+  
Sbjct: 20  PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVL 79

Query: 67  HTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLS--AYVNQKKFGGD 123
            + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F   
Sbjct: 80  MSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDK 139

Query: 124 APYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFI 173
            PY++MFGPD CG   K LH I  ++     + +E   +          TDK TH YT I
Sbjct: 140 TPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLI 198

Query: 174 LRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKP 231
           L PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP+AVKP
Sbjct: 199 LNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKP 258

Query: 232 EGY--------------------DSIPKEIPDPKAKKPDNWDEDEDGLWKPPK------- 264
           + +                    D  P+ +PDP A+KP++WDED DG W+ P+       
Sbjct: 259 DDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCE 318

Query: 265 ------------IPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIK 312
                       I NP YKG W+P  I NPNY+G WK   I NP  FE D + + + P  
Sbjct: 319 SAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFE-DLEPFKMTPFS 377

Query: 313 YVGIEVWQV 321
            +G+E+W +
Sbjct: 378 AIGLELWSM 386
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.94
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 99.93
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.66
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.41
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.43
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=2.1e-115  Score=854.37  Aligned_cols=308  Identities=41%  Similarity=0.814  Sum_probs=276.5

Q ss_pred             hhhcceeeeEEecCCCCcCCCeEecccccCC------CCCccEEEeccccCCCCCCcceeeccccchhhhhccCCC-ccC
Q 020827           12 FQISVSEIFFEERFDDGWRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSN   84 (321)
Q Consensus        12 ~~~~~~~v~F~E~Fd~~~~~rWi~S~~~k~~------~~~G~w~~~~g~~~~~~~D~GLv~~~~ak~yaIs~kl~~-~~~   84 (321)
                      +..++++++|+|+|+++|.+|||+|+++|++      .|.|+|++++|++++.++|+||||+++|||||||++|++ |++
T Consensus        19 ~p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~   98 (424)
T 1jhn_A           19 APVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLF   98 (424)
T ss_dssp             CCCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECS
T ss_pred             cCCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCcccc
Confidence            4466799999999999999999999998663      367999999999999999999999999999999999997 999


Q ss_pred             CCCceEEEEEEeeecccccCCceEEEcccc--cccccccCCCCeeEEecccccCCCCceEEEEEEeCCCc-------ccc
Q 020827           85 KNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN-------YPI  155 (321)
Q Consensus        85 ~~k~LVvQYeVK~q~~i~CGGaYIKLl~~~--~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~-------~~~  155 (321)
                      ++|+||||||||||++|+|||||||||+..  ++|++|+++|||+||||||+|| .++||||||||+|.+       |.+
T Consensus        99 ~~k~LVvQYeVk~q~~idCGGaYiKLl~~~~~~d~~~f~~~TpY~IMFGPD~CG-~~~kvH~I~~~knp~~g~~~ekh~~  177 (424)
T 1jhn_A           99 DTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAK  177 (424)
T ss_dssp             SSSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCC
T ss_pred             CCCCEEEEEEEEecccccccceEEEeecCcccCCHhHcCCCCCceEeccCCccC-CCCeEEEEEecCCCCCCchhhhccc
Confidence            999999999999999999999999999974  7999999999999999999999 799999999998854       555


Q ss_pred             ccCC---ccccccccceEEEEeCCCCceEEEECceEeccCCccccCC--CCCCcccccCCCCCCCCCCCCccccCCCCCC
Q 020827          156 KKEL---ECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVK  230 (321)
Q Consensus       156 ~~~~---~~~~d~~tHlYTLii~~d~t~ei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~~~K  230 (321)
                      ++++   .|++|++||||||||||||||+|+|||+++.+|||++||+  ++||++|+||+++||+|||++++|+||+|+|
T Consensus       178 ~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~K  257 (424)
T 1jhn_A          178 RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVK  257 (424)
T ss_dssp             CCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC-------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCC
T ss_pred             CCcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccHHhccccCCCcccccCccccCccccccccccCCcccCC
Confidence            5554   3568999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             CCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCC
Q 020827          231 PEGYDS--------------------IPKEIPDPKAKKPDNWDEDEDGLWK-------------------PPKIPNPAYK  271 (321)
Q Consensus       231 P~dWdd--------------------~~~~I~dP~~~kP~dwd~~~~g~W~-------------------~p~i~NP~yk  271 (321)
                      |+|||+                    +|++|+||+|+||+|||+++||+|+                   +|||.||+||
T Consensus       258 PeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~yk  337 (424)
T 1jhn_A          258 PDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYK  337 (424)
T ss_dssp             CTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCC
T ss_pred             ccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCcccc
Confidence            999973                    4779999999999999998777666                   5777888899


Q ss_pred             cccccCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCcCCceEEEEEeeeC
Q 020827          272 GPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQV  321 (321)
Q Consensus       272 G~W~~~~I~NP~y~g~W~p~~i~np~~y~~d~~~~~~~~i~~vg~ElW~v  321 (321)
                      |+|+||+|+||+|+|+|+||+|+||+ |++|.+|++|.+|+|||||||||
T Consensus       338 G~W~pp~I~NP~Ykg~W~p~~I~NP~-y~~d~~p~~~~~i~~iG~ElW~~  386 (424)
T 1jhn_A          338 GKWKPPMIDNPNYQGIWKPRKIPNPD-FFEDLEPFKMTPFSAIGLELWSM  386 (424)
T ss_dssp             CSCCCCEEECTTCCCSCCCCBCCCTT-CCCCCCTTCCCCEEEEEECCCCS
T ss_pred             CcccCCccCCCcccccccccccCCcc-ccCCCcccccCcccEEEEEeEEe
Confidence            99999999999999999999999999 99999999999999999999997
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 2e-79
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 4e-33
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 9e-31
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 7e-14
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  240 bits (613), Expect = 2e-79
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 21/238 (8%)

Query: 17  SEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQTHTDA 70
            E++F + FD G  S W++S  K+ +         G ++    K    P DKG+   + A
Sbjct: 8   GEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRA 67

Query: 71  RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYS 127
           +H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY+
Sbjct: 68  KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 127

Query: 128 LMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPD 177
           +MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD
Sbjct: 128 IMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 186

Query: 178 ASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235
            S+ IL+D    +SG++   + + P   I        +D     +I   +    + + 
Sbjct: 187 NSFEILVDQSIVNSGNL-EPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWA 243
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.97
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 99.93
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.81
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.58
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 98.9
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.55
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=1.8e-80  Score=574.84  Aligned_cols=221  Identities=33%  Similarity=0.568  Sum_probs=196.6

Q ss_pred             hcceeeeEEecCCCCcCCCeEecccccCCC------CCccEEEeccccCCCCCCcceeeccccchhhhhccCCC-ccCCC
Q 020827           14 ISVSEIFFEERFDDGWRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKN   86 (321)
Q Consensus        14 ~~~~~v~F~E~Fd~~~~~rWi~S~~~k~~~------~~G~w~~~~g~~~~~~~D~GLv~~~~ak~yaIs~kl~~-~~~~~   86 (321)
                      .++++|||+|+|+++|.+||++|+++++..      +.|+|.+.+++..+.++|+||||+++|||||||++|++ |++++
T Consensus         5 ~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~~   84 (249)
T d1jhna4           5 VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDT   84 (249)
T ss_dssp             CCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSS
T ss_pred             CCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccCC
Confidence            467999999999999999999999986542      45777776666667788999999999999999999998 99999


Q ss_pred             CceEEEEEEeeecccccCCceEEEcccc--cccccccCCCCeeEEecccccCCCCceEEEEEEeCCCcc------ccccC
Q 020827           87 RTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNY------PIKKE  158 (321)
Q Consensus        87 k~LVvQYeVK~q~~i~CGGaYIKLl~~~--~d~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~~~~~~------~~~~~  158 (321)
                      |+||||||||+|++++|||||||||+..  +++++|+++|||+||||||+|| .++||||||||+|.+.      +.+++
T Consensus        85 k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfIf~~~np~~~~~eek~~~~p  163 (249)
T d1jhna4          85 KPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRP  163 (249)
T ss_dssp             SCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCCCC
T ss_pred             CCEEEEEEeeeccCccccceEEEeecCcccCCHhHcCCCCCceEEeCCcccC-CCCEEEEEEEcCCCCCccceeeeecCC
Confidence            9999999999999999999999999864  6899999999999999999999 7899999999987532      23332


Q ss_pred             ----CccccccccceEEEEeCCCCceEEEECceEeccCCccccCCCCCCcccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 020827          159 ----LECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGY  234 (321)
Q Consensus       159 ----~~~~~d~~tHlYTLii~~d~t~ei~iD~~~~~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~~~KP~dW  234 (321)
                          +.+.+|++||||||||||||||||+|||+++.+|+|+ +|.+.||++|.||.++||+||+|+++|+||+++||+||
T Consensus       164 ~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le-~~~~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kpedW  242 (249)
T d1jhna4         164 DADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE-PFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDW  242 (249)
T ss_dssp             SSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC-TTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHH
T ss_pred             CccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC-cccCCCcccCCCcccCCCCCccccccccCCCcCChhhh
Confidence                2456899999999999999999999999999999985 58888999999999999999999999999999999999


Q ss_pred             CC
Q 020827          235 DS  236 (321)
Q Consensus       235 dd  236 (321)
                      |+
T Consensus       243 de  244 (249)
T d1jhna4         243 AN  244 (249)
T ss_dssp             HH
T ss_pred             hh
Confidence            96
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure