Citrus Sinensis ID: 020853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVNNSSALPIPPKSSVPPATALNPEATAGGISPASAPPIGSHSLKLHPLTCALLVMTLIASFAIF
ccEEEEEEEEEEEEccccccccccccEEEEccccccccccccccccEEEEcccccccHHHHHHcccccccEEEEccccccccEEEEcccccccccEEccccccccccEEEEEEEEEEccEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccEEEEEEEcccEEEEcccEEEEEEcccccEEEEEEEEcccccEEEEHEEEEEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
ccccEEEEEEEEEEcccccccEEcccEEEEcccccccccccccccccEEEcccccccHHHHHHHccccccEEEEEEcccccEEEEEcccccccccEccccccccccEEEEEEEEEEEccEEEcccccEEEEcccEEEcccHHHHHHHHHHHHHHHccccccccccccccHEEEcccccccccccEEEEEEccccEEEcccccEEEEEcccccEEEEEEEEccccEEEEEcEEEcccEEEEEccccEEEEEcccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHc
MSTGFLVEDVLHLAtdekqsksvdsrisfgcgrvqtgsfldgaapnglfglgmdktsvpsilanqglipnsfsmcfgsdgtgrisfgdkgspgqgetpfslrqthptynititqvsvggnavnfefsaifdsgtsftylndpaytQISETFNSLAKEkretstsdlpfeycyvlspnqtnfeypvvnltmkgggpffvndpivivssepkglYLYCLGvvksdnvniigqnfmtgynivfdreknvlgwkasdcygvnnssalpippkssvppatalnpeataggispasappigshslklhpLTCALLVMTLIASFAIF
mstgflveDVLHlatdekqsksvdsrISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVNNSSALPIPPKSSVPPATALNPEATAGGISPASAPPIGSHSLKLHPLTCALLVMTLIASFAIF
MSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVNNSSALPIPPKSSVPPATALNPEATAGGISPASAPPIGSHSLKLHPLTCALLVMTLIASFAIF
*****LVEDVLHL************RISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGT**********************THPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFN************DLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVN****************************************LKLHPLTCALLVMTLIASFAI*
MSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSL**********DLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASD***********************************************LHPLTCALLVMTLIASFAIF
MSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNS**********SDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVNNSSALPIPPKSSVPPATALNPEATAGGISPASAPPIGSHSLKLHPLTCALLVMTLIASFAIF
*STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVNN****************************************KLHPLTCALLVMTLIASFAIF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVNNSSALPIPPKSSVPPATALNPEATAGGISPASAPPIGSHSLKLHPLTCALLVMTLIASFAIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q9LX20528 Aspartic proteinase-like no no 0.878 0.532 0.349 9e-41
Q9S9K4475 Aspartic proteinase-like no no 0.756 0.509 0.268 1e-12
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.725 0.565 0.249 2e-11
Q0IU52410 Aspartic proteinase Asp1 no no 0.746 0.582 0.242 1e-09
Q9Y5Z0518 Beta-secretase 2 OS=Homo yes no 0.762 0.471 0.243 3e-06
Q6IE75514 Beta-secretase 2 OS=Rattu yes no 0.815 0.507 0.233 2e-05
C4YSF6391 Candidapepsin-1 OS=Candid N/A no 0.678 0.554 0.232 2e-05
Q766C2438 Aspartic proteinase nepen N/A no 0.671 0.490 0.248 3e-05
P0CY26391 Candidapepsin-1 OS=Candid N/A no 0.678 0.554 0.232 3e-05
P0CY27391 Candidapepsin-1 OS=Candid N/A no 0.678 0.554 0.232 3e-05
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function desciption
 Score =  167 bits (423), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 157/306 (51%), Gaps = 25/306 (8%)

Query: 2   STGFLVEDVLHLATDEKQ-----SKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT 56
           S+G LVED+LHL  +        S SV +R+  GCG+ Q+G +LDG AP+GL GLG  + 
Sbjct: 196 SSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGDYLDGVAPDGLMGLGPAEI 255

Query: 57  SVPSILANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSL--RQTHPTYNITITQ 114
           SVPS L+  GL+ NSFS+CF  + +GRI FGD G   Q  TPF       +  Y + +  
Sbjct: 256 SVPSFLSKAGLMRNSFSLCFDEEDSGRIYFGDMGPSIQQSTPFLQLDNNKYSGYIVGVEA 315

Query: 115 VSVGGNAV-NFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSD----LPFE 169
             +G + +    F+   DSG SFTYL +  Y ++     +L  ++   +TS     + +E
Sbjct: 316 CCIGNSCLKQTSFTTFIDSGQSFTYLPEEIYRKV-----ALEIDRHINATSKNFEGVSWE 370

Query: 170 YCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS--DNVNI 227
           YCY  S      + P + L       F ++ P+ +   + +GL  +CL +  S  + +  
Sbjct: 371 YCYESSAEP---KVPAIKLKFSHNNTFVIHKPLFVF-QQSQGLVQFCLPISPSGQEGIGS 426

Query: 228 IGQNFMTGYNIVFDREKNVLGWKASDCYGVNNSSALPIPPKSSVPPATALNPEATAGG-- 285
           IGQN+M GY +VFDRE   LGW  S C           P  +S P     + + + GG  
Sbjct: 427 IGQNYMRGYRMVFDRENMKLGWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHA 486

Query: 286 ISPASA 291
           +SPA A
Sbjct: 487 VSPAIA 492

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y5Z0|BACE2_HUMAN Beta-secretase 2 OS=Homo sapiens GN=BACE2 PE=1 SV=1 Back     alignment and function description
>sp|Q6IE75|BACE2_RAT Beta-secretase 2 OS=Rattus norvegicus GN=Bace2 PE=2 SV=1 Back     alignment and function description
>sp|C4YSF6|CARP1_CANAW Candidapepsin-1 OS=Candida albicans (strain WO-1) GN=SAP1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|P0CY26|CARP1_CANAX Candidapepsin-1 OS=Candida albicans GN=SAP1 PE=1 SV=1 Back     alignment and function description
>sp|P0CY27|CARP1_CANAL Candidapepsin-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SAP1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
255586856 533 Aspartic proteinase nepenthesin-1 precur 0.987 0.592 0.644 1e-112
356540838 829 PREDICTED: peroxidase [Glycine max] 0.953 0.367 0.611 1e-100
449456843 547 PREDICTED: aspartic proteinase-like prot 0.875 0.511 0.602 1e-97
449495082 524 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.875 0.534 0.602 2e-97
296084698306 unnamed protein product [Vitis vinifera] 0.909 0.950 0.624 6e-97
359496966294 PREDICTED: aspartic proteinase-like prot 0.878 0.955 0.640 6e-97
356559246 516 PREDICTED: aspartic proteinase-like prot 0.965 0.598 0.582 5e-96
357517935 544 Aspartic proteinase-like protein [Medica 0.881 0.518 0.593 1e-95
30680102 513 aspartyl protease-like protein [Arabidop 0.815 0.508 0.633 2e-95
356496606 508 PREDICTED: aspartic proteinase-like prot 0.968 0.610 0.603 1e-94
>gi|255586856|ref|XP_002534038.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223525945|gb|EEF28342.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/326 (64%), Positives = 251/326 (76%), Gaps = 10/326 (3%)

Query: 2   STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI 61
           STG LVED+LHL TD+ QS+++D++I FGCGRVQTGSFLDGAAPNGLFGLGM   SVPS 
Sbjct: 209 STGVLVEDLLHLTTDDAQSRALDAKIIFGCGRVQTGSFLDGAAPNGLFGLGMTNISVPST 268

Query: 62  LANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNA 121
           LA +G   NSFSMCFG DG GRISFGD GS GQGETPF+LRQ HPTYN++IT+++VGG  
Sbjct: 269 LAREGYTSNSFSMCFGRDGIGRISFGDTGSSGQGETPFNLRQLHPTYNVSITKINVGGRD 328

Query: 122 VNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNF 181
            + EFSAIFDSGTSFTYLNDPAYT ISE+FN  AKEKR +S SD+PFEYCY +S NQTN 
Sbjct: 329 ADLEFSAIFDSGTSFTYLNDPAYTLISESFNIGAKEKRYSSISDIPFEYCYEMSSNQTNL 388

Query: 182 EYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVFD 241
           E P VNL M+GG  F V DPIVIV  +  G  +YCL +VKS +VNIIGQNFMTGY IVF+
Sbjct: 389 EIPTVNLVMQGGSQFNVTDPIVIVILQ-GGASIYCLAIVKSGDVNIIGQNFMTGYRIVFN 447

Query: 242 REKNVLGWKASDCYGVNNSSALPIPPKS-SVPPATALNPEATAGGISPASA----PPIGS 296
           RE+NVLGWKASDCY   +++  P+ P S  +PPATA+NP+ATAG  +        PP+G+
Sbjct: 448 RERNVLGWKASDCYDDMDTTTFPVDPISPGIPPATAVNPQATAGSGNTTEVSGTPPPVGN 507

Query: 297 HS---LKLHPLTCALLVMTLIASFAI 319
           ++    KL+ LT A ++M LI  F I
Sbjct: 508 NAPKLPKLNSLTFA-IIMVLIPFFTI 532

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540838|ref|XP_003538891.1| PREDICTED: peroxidase [Glycine max] Back     alignment and taxonomy information
>gi|449456843|ref|XP_004146158.1| PREDICTED: aspartic proteinase-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495082|ref|XP_004159729.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296084698|emb|CBI25840.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496966|ref|XP_002269916.2| PREDICTED: aspartic proteinase-like protein 1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559246|ref|XP_003547911.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357517935|ref|XP_003629256.1| Aspartic proteinase-like protein [Medicago truncatula] gi|355523278|gb|AET03732.1| Aspartic proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|30680102|ref|NP_849967.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|17978947|gb|AAL47439.1| putative chloroplast nucleoid DNA-binding protein [Arabidopsis thaliana] gi|22655368|gb|AAM98276.1| At2g17760/At2g17760 [Arabidopsis thaliana] gi|330251585|gb|AEC06679.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356496606|ref|XP_003517157.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
TAIR|locus:2827921513 AT2G17760 [Arabidopsis thalian 0.871 0.543 0.621 5.3e-95
TAIR|locus:2125324524 AT4G35880 [Arabidopsis thalian 0.85 0.519 0.564 1.9e-83
TAIR|locus:2080903529 AT3G51330 [Arabidopsis thalian 0.909 0.550 0.478 2.1e-68
TAIR|locus:2080913528 AT3G51350 [Arabidopsis thalian 0.940 0.570 0.418 7.9e-62
TAIR|locus:2080908530 AT3G51340 [Arabidopsis thalian 0.990 0.598 0.399 6.6e-58
TAIR|locus:2080973488 AT3G51360 [Arabidopsis thalian 0.928 0.608 0.402 5.9e-57
TAIR|locus:2184138528 AT5G10080 [Arabidopsis thalian 0.890 0.539 0.354 2.9e-44
TAIR|locus:2172661493 AT5G22850 [Arabidopsis thalian 0.862 0.559 0.296 2.5e-23
TAIR|locus:2083098 632 AT3G50050 [Arabidopsis thalian 0.853 0.431 0.268 2.7e-20
TAIR|locus:2200023492 AT1G08210 [Arabidopsis thalian 0.796 0.518 0.262 7.9e-18
TAIR|locus:2827921 AT2G17760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 177/285 (62%), Positives = 225/285 (78%)

Query:     2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI 61
             STG LVEDVLHL +++K SK++ +R++FGCG+VQTG F DGAAPNGLFGLG++  SVPS+
Sbjct:   198 STGVLVEDVLHLVSNDKSSKAIPARVTFGCGQVQTGVFHDGAAPNGLFGLGLEDISVPSV 257

Query:    62 LANQGLIPNSFSMCFGSDGTGRISFGDKGSPGQGETPFSLRQTHPTYNITITQVSVGGNA 121
             LA +G+  NSFSMCFG+DG GRISFGDKGS  Q ETP ++RQ HPTYNIT+T++SVGGN 
Sbjct:   258 LAKEGIAANSFSMCFGNDGAGRISFGDKGSVDQRETPLNIRQPHPTYNITVTKISVGGNT 317

Query:   122 VNFEFSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKR-ETSTSDLPFEYCYVLSPNQTN 180
              + EF A+FDSGTSFTYL D AYT ISE+FNSLA +KR +T+ S+LPFEYCY LSPN+ +
Sbjct:   318 GDLEFDAVFDSGTSFTYLTDAAYTLISESFNSLALDKRYQTTDSELPFEYCYALSPNKDS 377

Query:   181 FEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVNIIGQNFMTGYNIVF 240
             F+YP VNLTMKGG  + V  P+V++    K   +YCL ++K ++++IIGQNFMTGY +VF
Sbjct:   378 FQYPAVNLTMKGGSSYPVYHPLVVIPM--KDTDVYCLAIMKIEDISIIGQNFMTGYRVVF 435

Query:   241 DREKNVLGWKASDCY-GVNNSSALPIPPKSSV--PPATALNPEAT 282
             DREK +LGWK SDCY G  ++  LP    SS   PPA++ +PEAT
Sbjct:   436 DREKLILGWKESDCYTGETSARTLPSNRSSSSARPPASSFDPEAT 480
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2125324 AT4G35880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080903 AT3G51330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080913 AT3G51350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080908 AT3G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080973 AT3G51360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184138 AT5G10080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-31
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-26
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-19
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 4e-19
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 6e-11
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 3e-09
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 4e-09
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 6e-09
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 5e-07
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-05
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  117 bits (296), Expect = 3e-31
 Identities = 65/274 (23%), Positives = 93/274 (33%), Gaps = 72/274 (26%)

Query: 2   STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI 61
           ++G L  +                 ++FGCG    G    GA   G+ GLG    S+ S 
Sbjct: 43  TSGVLATETFTFGDSSVSV----PNVAFGCGTDNEGGSFGGAD--GILGLGRGPLSLVSQ 96

Query: 62  LANQGLIPNSFSMCFGSD----GTGRISFGD---KGSPGQGETPFSLRQTHPT-YNITIT 113
           L   G   N FS C        G+  +  GD    G  G   TP      +PT Y + + 
Sbjct: 97  L---GSTGNKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLE 153

Query: 114 QVSVGGNAVNFEFSA-----------IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETS 162
            +SVGG  +    S            I DSGT+ TYL DPA                   
Sbjct: 154 GISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------------------- 194

Query: 163 TSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS 222
                               YP + L   GG    +      V        + CL ++ S
Sbjct: 195 --------------------YPDLTLHFDGGADLELPPENYFVDVGEG---VVCLAILSS 231

Query: 223 --DNVNIIGQNFMTGYNIVFDREKNVLGWKASDC 254
               V+I+G      + + +D E + LG+  +DC
Sbjct: 232 SSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.98
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 99.97
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.94
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.37
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 97.51
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.22
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.07
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 93.23
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 91.41
PF1365090 Asp_protease_2: Aspartyl protease 88.49
PF09668124 Asp_protease: Aspartyl protease; InterPro: IPR0191 86.68
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 84.12
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 83.65
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 83.26
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
Probab=100.00  E-value=5.2e-42  Score=318.28  Aligned_cols=239  Identities=29%  Similarity=0.497  Sum_probs=196.4

Q ss_pred             ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecC---
Q 020853            2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS---   78 (320)
Q Consensus         2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~---   78 (320)
                      ++|++++|+|+|++..     .++++.|||++.+++.+.   ..+||||||+..++++.|+..+  .+++||+||.+   
T Consensus        46 ~~G~~~~D~v~ig~~~-----~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L~~~~~  115 (299)
T cd05472          46 TTGDLATDTLTLGSSD-----VVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTASS--YGGVFSYCLPDRSS  115 (299)
T ss_pred             EEEEEEEEEEEeCCCC-----ccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhHh--hcCceEEEccCCCC
Confidence            4799999999999762     378999999998877653   4699999999999999998764  36899999986   


Q ss_pred             CCCeeEEECCCCC--CCCeeeeCccCCC-CCeEEEEEEEEEECCeeeecc------cceEEccccceeeechHHHHHHHH
Q 020853           79 DGTGRISFGDKGS--PGQGETPFSLRQT-HPTYNITITQVSVGGNAVNFE------FSAIFDSGTSFTYLNDPAYTQISE  149 (320)
Q Consensus        79 ~~~G~i~fG~~d~--~~~~~tpl~~~~~-~~~y~V~l~~i~v~g~~~~~~------~~~iiDSGTt~~~lp~~~y~~l~~  149 (320)
                      ...|+|+||++|+  .++.|+|++.++. ..+|.|++++|+|+++.+..+      ..+||||||++++||+++|++|.+
T Consensus       116 ~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~  195 (299)
T cd05472         116 SSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRD  195 (299)
T ss_pred             CCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHH
Confidence            3579999999998  4899999987543 358999999999999988652      479999999999999999999999


Q ss_pred             HHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeC---CCce
Q 020853          150 TFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS---DNVN  226 (320)
Q Consensus       150 ~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~---~~~~  226 (320)
                      ++.++....... .....++.||+.+. .....+|+|+|+|+++..++|++++|++.....+  .+|+++...   .+.+
T Consensus       196 ~l~~~~~~~~~~-~~~~~~~~C~~~~~-~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~--~~C~~~~~~~~~~~~~  271 (299)
T cd05472         196 AFRAAMAAYPRA-PGFSILDTCYDLSG-FRSVSVPTVSLHFQGGADVELDASGVLYPVDDSS--QVCLAFAGTSDDGGLS  271 (299)
T ss_pred             HHHHHhccCCCC-CCCCCCCccCcCCC-CcCCccCCEEEEECCCCEEEeCcccEEEEecCCC--CEEEEEeCCCCCCCCE
Confidence            998876432211 11223446998753 3346899999999768999999998877433333  689988765   2479


Q ss_pred             eecHhhhceeEEEEeCCCCEEEEEeCCC
Q 020853          227 IIGQNFMTGYNIVFDREKNVLGWKASDC  254 (320)
Q Consensus       227 IlG~~fl~~~yvvfD~e~~riGfa~~~c  254 (320)
                      |||+.|||++|+|||++++|||||+++|
T Consensus       272 ilG~~fl~~~~vvfD~~~~~igfa~~~C  299 (299)
T cd05472         272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC  299 (299)
T ss_pred             EEchHHccceEEEEECCCCEEeEecCCC
Confidence            9999999999999999999999999999

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 6e-07
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 3e-06
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 4e-06
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 4e-05
1ls5_A328 Crystal Structure Of Plasmepsin Iv From P. Falcipar 3e-04
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 116/287 (40%), Gaps = 43/287 (14%)
Query: 3   TGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSI- 61
           TGF+ ED++ +      S  V+    F         FL G   NG+ GL     + PS  
Sbjct: 78  TGFVGEDLVTIPKGFNTSFLVNIATIFESENF----FLPGIKWNGILGLAYATLAKPSSS 133
Query: 62  -------LANQGLIPNSFSMCF----------GSDGTGRISFGDKGSPGQGETPFSLRQT 104
                  L  Q  IPN FSM            G++G   +  G + S  +G+  ++  + 
Sbjct: 134 LETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE 193
Query: 105 HPTYNITITQVSVGGNAVNFEF------SAIFDSGTSFTYLNDPAYTQISETF--NSLAK 156
              Y I I ++ +GG ++N +        AI DSGT+   L    +  + E     SL  
Sbjct: 194 EWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIP 253
Query: 157 EKRE--TSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGP-----FFVNDPIVIVSSEP 209
           E  +   + S L    C+  S    ++ +P +++ ++           +   + I     
Sbjct: 254 EFSDGFWTGSQLA---CWTNSETPWSY-FPKISIYLRDENSSRSFRITILPQLYIQPMMG 309
Query: 210 KGLYLYC--LGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDC 254
            GL   C   G+  S N  +IG   M G+ ++FDR +  +G+ AS C
Sbjct: 310 AGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 5e-42
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 9e-42
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-39
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 7e-15
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-14
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-14
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-14
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 6e-14
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 9e-14
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 4e-13
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 3e-11
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 7e-11
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-10
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-10
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 3e-10
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 3e-10
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 8e-10
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-09
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-09
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 3e-09
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-09
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 6e-09
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 6e-09
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-08
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 3e-08
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-07
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-07
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-07
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 9e-07
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-06
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-06
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 3e-06
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
 Score =  148 bits (375), Expect = 5e-42
 Identities = 52/282 (18%), Positives = 92/282 (32%), Gaps = 37/282 (13%)

Query: 2   STGFLVEDVLHLAT--DEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVP 59
           + G L        T    K    V+  +   C   +  + L   +  G+ GL     ++P
Sbjct: 93  AAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALP 151

Query: 60  SILANQGLIPNSFSMCFGSDGTGRISFGD------KGSPGQGETPFSLRQTHPTYNITIT 113
           + +A+   + N F +C  + G G   FG       + +     TP   +   P + I+  
Sbjct: 152 AQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISAR 211

Query: 114 QVSVGGNAVNFEFSA------IFDSGTSFTYLNDPAYTQISETFNSLAKEKRETST---- 163
            + VG   V     A      +  +   +  L    Y  + + F      +         
Sbjct: 212 SIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVAR 271

Query: 164 ---SDLPFEYCYVLS---PNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL 217
              +  PF  CY       N   +  P V L + GG  + +     +V  +       C+
Sbjct: 272 AVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQG---TACV 328

Query: 218 GVVKSD---------NVNIIGQNFMTGYNIVFDREKNVLGWK 250
             V+              I+G   M  + + FD EK  LG+ 
Sbjct: 329 AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 99.9
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.54
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 94.46
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.28
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1.3e-43  Score=341.57  Aligned_cols=251  Identities=20%  Similarity=0.355  Sum_probs=201.9

Q ss_pred             ceeEEEEEEEEeecCCCC---ccccccceEEeeeeecc--CccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEee
Q 020853            2 STGFLVEDVLHLATDEKQ---SKSVDSRISFGCGRVQT--GSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCF   76 (320)
Q Consensus         2 ssG~l~~D~l~l~~~~~~---~~~~~~~~~FGc~~~~~--g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl   76 (320)
                      ++|+|++|+|+|++.++.   ....++++.|||++.+.  +.+   .+.+||||||++.+|+++||++++.++++||+||
T Consensus       106 ~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~---~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL  182 (413)
T 3vla_A          106 TGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLA---SGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL  182 (413)
T ss_dssp             CCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSC---TTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEEC
T ss_pred             eeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcc---cccccccccCCCCcchHHHHhhhcCCCceEEEeC
Confidence            689999999999864332   12457899999999873  332   3479999999999999999999887899999999


Q ss_pred             cC--CCCeeEEECCCCC---------CC-CeeeeCccCCCC-----------CeEEEEEEEEEECCeeeecc--------
Q 020853           77 GS--DGTGRISFGDKGS---------PG-QGETPFSLRQTH-----------PTYNITITQVSVGGNAVNFE--------  125 (320)
Q Consensus        77 ~~--~~~G~i~fG~~d~---------~~-~~~tpl~~~~~~-----------~~y~V~l~~i~v~g~~~~~~--------  125 (320)
                      .+  +..|+|+||+.+.         .+ +.|+||+.++..           .+|+|++++|+||++.+.++        
T Consensus       183 ~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~  262 (413)
T 3vla_A          183 SGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISS  262 (413)
T ss_dssp             CSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCT
T ss_pred             CCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhccccc
Confidence            97  4689999999874         25 999999876432           58999999999999998765        


Q ss_pred             ---cceEEccccceeeechHHHHHHHHHHHHhhhccccC-CCCCCCcceeeecCCCC---CCccCceEEEEEcC-CceEE
Q 020853          126 ---FSAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET-STSDLPFEYCYVLSPNQ---TNFEYPVVNLTMKG-GGPFF  197 (320)
Q Consensus       126 ---~~~iiDSGTt~~~lp~~~y~~l~~~i~~~~~~~~~~-~~~~~~~~~C~~~~~~~---~~~~~P~i~l~f~g-g~~~~  197 (320)
                         ..+||||||++++||+++|++|+++|.+++...+.. .+...+++.||+.+...   .+..+|+|+|+|.| +..|+
T Consensus       263 ~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~  342 (413)
T 3vla_A          263 AGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWT  342 (413)
T ss_dssp             TSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEE
T ss_pred             CCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCccccccccCCCcEEEEEcCCcEEEE
Confidence               479999999999999999999999999987521111 12234567899975311   12479999999976 48999


Q ss_pred             EcCCeeEEEeCCCCeeEEEEEEEeCC----CceeecHhhhceeEEEEeCCCCEEEEEeC------CCCCCC
Q 020853          198 VNDPIVIVSSEPKGLYLYCLGVVKSD----NVNIIGQNFMTGYNIVFDREKNVLGWKAS------DCYGVN  258 (320)
Q Consensus       198 i~~~~~~~~~~~~~~~~~Clg~~~~~----~~~IlG~~fl~~~yvvfD~e~~riGfa~~------~c~~~~  258 (320)
                      |++++|++...+ +  .+|++++...    +.||||+.|||++|+|||++++|||||++      .|.+.+
T Consensus       343 l~~~~y~~~~~~-~--~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~~~~~~~c~~~~  410 (413)
T 3vla_A          343 ITGSNSMVYIND-N--VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFN  410 (413)
T ss_dssp             ECHHHHEEEEET-T--EEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEGGGGTCCGGGSB
T ss_pred             eCccceEEEeCC-C--cEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEecccCcccccCcC
Confidence            998888776443 3  6899887643    48999999999999999999999999985      576654
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 320
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 8e-24
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-20
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 9e-17
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 7e-16
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-15
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 5e-15
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-14
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 8e-14
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-13
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-13
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-12
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-12
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-12
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-11
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 3e-11
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 3e-11
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 6e-11
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 7e-11
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 9e-11
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 7e-10
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-09
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-08
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 98.2 bits (243), Expect = 8e-24
 Identities = 50/282 (17%), Positives = 90/282 (31%), Gaps = 37/282 (13%)

Query: 1   MSTGFLVEDVLHLA--TDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSV 58
            + G L             K    V+  +   C   +  + L   +  G+ GL     ++
Sbjct: 92  CAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLAL 150

Query: 59  PSILANQGLIPNSFSMCFGSDGTGRISFG------DKGSPGQGETPFSLRQTHPTYNITI 112
           P+ +A+   + N F +C  + G G   FG       + +     TP   +   P + I+ 
Sbjct: 151 PAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISA 210

Query: 113 TQVSVGGNAVNFEFS------AIFDSGTSFTYLNDPAYTQISETFNSLAKEKRE------ 160
             + VG   V            +  +   +  L    Y  + + F      +        
Sbjct: 211 RSIVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVA 270

Query: 161 -TSTSDLPFEYCYVLS---PNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYC 216
               +  PF  CY       N   +  P V L + GG  + +     +V  +       C
Sbjct: 271 RAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGT---AC 327

Query: 217 LGVVKSD---------NVNIIGQNFMTGYNIVFDREKNVLGW 249
           +  V+              I+G   M  + + FD EK  LG+
Sbjct: 328 VAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.98
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 99.98
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.97
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.97
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.97
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.96
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 99.96
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.96
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.95
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.95
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=100.00  E-value=3.6e-36  Score=279.46  Aligned_cols=224  Identities=20%  Similarity=0.328  Sum_probs=185.8

Q ss_pred             ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC--------ChHHHHHhcCCC-CCee
Q 020853            2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT--------SVPSILANQGLI-PNSF   72 (320)
Q Consensus         2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~--------s~~~~L~~~g~i-~~~F   72 (320)
                      ..|.+++|+++|++..      ++++.|||+.....       .+||+|||+...        +++.+|.++|++ +++|
T Consensus        90 ~~G~~~~D~~~~g~~~------~~~~~f~~~~~~~~-------~~GilGlg~~~~~~~~~~~~~~~~~l~~q~~i~~~~f  156 (334)
T d1j71a_          90 SQGSFYKDTVGFGGIS------IKNQQFADVTTTSV-------DQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAY  156 (334)
T ss_dssp             EEEEEEEEEEEETTEE------EEEEEEEEEEEESS-------SSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEE
T ss_pred             EEEEEEeeEEEEeeee------ccCceeeeeeeecc-------ccCccccccccccccccccchhhHHHHhccccccceE
Confidence            5799999999998863      78999999987542       479999997752        588999999999 8899


Q ss_pred             EEeecC--CCCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeecccceEEccccceeeechHHHHH
Q 020853           73 SMCFGS--DGTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQ  146 (320)
Q Consensus        73 S~cl~~--~~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~  146 (320)
                      |+|+.+  ...|+|+||++|++    ++.|+|+..   ..+|.|++++|.|++..+..+..+||||||++++||+++|++
T Consensus       157 s~~l~~~~~~~g~l~lGg~d~~~~~g~~~~~~~~~---~~~~~v~l~~i~v~g~~~~~~~~aiiDSGt~~~~lp~~~~~~  233 (334)
T d1j71a_         157 SLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTS---SVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADK  233 (334)
T ss_dssp             EEECCCTTCSEEEEEETEEETTSEEEEEEEEECCC---SSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHH
T ss_pred             EEEeccCCCCCceEEecccChhhcccceeEeeecc---ccceEEeeceEEECCEEecccccccccCCCcceeccHHHHHH
Confidence            999987  35699999999876    688999864   357999999999999999888899999999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeCCCce
Q 020853          147 ISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVN  226 (320)
Q Consensus       147 l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~~~~~  226 (320)
                      |.+.+.+.....          ..||...+   ....|.++|+|.+|.+++|++++|++...+.   .+|+..+...+.+
T Consensus       234 l~~~~~~~~~~~----------~~~~~~~~---~~~~p~i~f~f~~g~~~~i~~~~y~~~~~~~---~~C~~~i~~~~~~  297 (334)
T d1j71a_         234 FARIVGATWDSR----------NEIYRLPS---CDLSGDAVFNFDQGVKITVPLSELILKDSDS---SICYFGISRNDAN  297 (334)
T ss_dssp             HHHHHTCEEETT----------TTEEECSS---SCCCSEEEEEESTTCEEEEEGGGGEEECSSS---SCEEESEEECTTC
T ss_pred             HHHHhCCEEcCC----------CCeeeccc---cccCCCceEEeCCCEEEEEChHHeEEecCCC---CEEEEEecCCCCc
Confidence            998885543211          12554432   2456999999987899999999888865544   4687444456789


Q ss_pred             eecHhhhceeEEEEeCCCCEEEEEeCCCCCC
Q 020853          227 IIGQNFMTGYNIVFDREKNVLGWKASDCYGV  257 (320)
Q Consensus       227 IlG~~fl~~~yvvfD~e~~riGfa~~~c~~~  257 (320)
                      |||++|||++|+|||+||+|||||+.+|++.
T Consensus       298 ILG~~fl~~~y~vfD~~n~~iGfA~~~~~~~  328 (334)
T d1j71a_         298 ILGDNFLRRAYIVYDLDDKTISLAQVKYTSS  328 (334)
T ss_dssp             EECHHHHTTEEEEEETTTTEEEEEEECCCSC
T ss_pred             EECHHhhCcEEEEEECCCCEEEEEECCCCCc
Confidence            9999999999999999999999999999765
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure