Citrus Sinensis ID: 020863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGNSS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccEEEccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHcccccc
Coil and Loop (DISEMBL)
myllgqvpgtwrwmlgvsaVPAIIQFVLMLfmpesprwlfmksDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQftgintvmyysptiVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFisgssasssgvYGWIAVIGLALYIAFfapgmgpvpwtlnsevypeqyrgicggmsATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFvpetqgltfLEVEQMWKErawgsslntesllehgnss
Flexible Loop (DISEMBL)
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEeelrkkktvrylDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERawgsslntesllehgnss
Low Complexity Region (SEG)
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRlaflagaglqafqqftgINTVMYYSPTIVQMAGFQSNQlalllslavaGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIsgssasssgVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATflilagiavlavvfvilfvPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGNSS
Disordered region (IsUnstruct)
*YLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWG***************
Disordered Region (DISOPRED)
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEID*******************DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ***********************
Disordered Region (DISEMBL)
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNT**********
Disordered Region (DISPRO)
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA*****************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLLGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDxxxxxxxxxxxxxxxxxxxxxKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGNSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q8VZR6	509	Inositol transporter 1 OS	yes	no	0.984	0.618	0.775	1e-144
Q9C757	580	Probable inositol transpo	no	no	0.571	0.315	0.521	2e-49
C0SPB2	457	Putative metabolite trans	yes	no	0.875	0.612	0.363	6e-45
Q01440	547	Membrane transporter D1 O	N/A	no	0.881	0.515	0.352	2e-44
P30606	609	Myo-inositol transporter	yes	no	0.909	0.477	0.336	9e-44
P46333	461	Probable metabolite trans	no	no	0.862	0.598	0.372	2e-43
Q9ZQP6	580	Probable inositol transpo	no	no	0.571	0.315	0.439	1e-40
O23492	582	Inositol transporter 4 OS	no	no	0.556	0.305	0.445	2e-40
P45598	472	Arabinose-proton symporte	yes	no	0.875	0.593	0.336	8e-40
P30605	584	Myo-inositol transporter	no	no	0.912	0.5	0.340	5e-39

>sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1

 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/325 (77%), Positives = 281/325 (86%), Gaps = 10/325 (3%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEI
Sbjct: 185 QVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEI 244

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           DHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 245 DHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 304

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF SNQLAL LSL VA  NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F  
Sbjct: 305 AGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFK 364

Query: 186 GSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244
            S  SS  G+YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWI
Sbjct: 365 QSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWI 424

Query: 245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW 304
           SNLIVAQTFLT+AE  GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WKERA+
Sbjct: 425 SNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAY 484

Query: 305 GS---------SLNTESLLEHGNSS 320
           G+         S N E LLE G+ S
Sbjct: 485 GNISGWGSSSDSNNMEGLLEQGSQS 509

Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 129/186 (69%), Gaps = 3/186 (1%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
            V GTWRWMLG++ +PA++QFVLM  +PESPRWL+ K  +E+A  +L +IY    +E EI
Sbjct: 182 DVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEI 241

Query: 66  DHLSAAAEEELRKK---KTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI 122
             L  + E E+ ++   + +  + + K+K +R   +AG GLQ FQQF GINTVMYYSPTI
Sbjct: 242 RALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI 301

Query: 123 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA 182
           VQ+AGF SN+ ALLLSL  AG NA G+I+ IY ID  GRKKL + SL GVIISL +L+  
Sbjct: 302 VQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGV 361

Query: 183 FISGSS 188
           F   ++
Sbjct: 362 FYEAAT 367

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 167/294 (56%), Gaps = 14/294 (4%)

Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
           WRWMLG++AVP+++  + +LFMPESPRWLF   ++ KA  +L K+     ++ EI  +  
Sbjct: 161 WRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKE 220

Query: 71  AAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS 130
           A +++    K     ++F    +R A +AG GL   QQF G NT++YY+P      GF  
Sbjct: 221 AEKQDEGGLK-----ELF-DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-G 273

Query: 131 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWA--FISGSS 188
           N  ++L ++ +   N + T+V I +ID  GRK L L   AG++ISL++L+    F   + 
Sbjct: 274 NSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTP 333

Query: 189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 248
           A+S     W  VI L ++I  FA   GPV W +  E++P   RGI  G+S  +  +  LI
Sbjct: 334 AAS-----WTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLI 388

Query: 249 VAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKER 302
           V+ T+  + E +G    FLI A I ++A +FV   V ET+G +  E+EQ  +++
Sbjct: 389 VSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDLRDK 442

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q01440|GTR1_LEIDO Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 176/295 (59%), Gaps = 13/295 (4%)

Query: 11  WRWMLGVSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLS 69
           WR  +G+ A+PA++Q F L+ F+PESPRWL  K   ++A  V  K         E+D   
Sbjct: 163 WRVAIGIGALPAVVQAFCLLFFLPESPRWLLSKGHADRAKAVADKF--------EVDLCE 214

Query: 70  AAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQ 129
               +EL   + + Y  +  ++++R   +  +GLQ  QQF+GINT+MYYS  I+  AGF+
Sbjct: 215 FQEGDELPSVR-IDYRPLM-ARDMRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFR 272

Query: 130 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLS-WAFISGSS 188
              + ++LS+ +A  NA+ T V I+ +D FGR+++ L S+ G ++ LV+++   F  G+ 
Sbjct: 273 DAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTR 332

Query: 189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI 248
            S S V G + +  LA+++A +APG+G +PW +  E++P   R     ++   NW +N++
Sbjct: 333 ISYS-VGGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVL 391

Query: 249 VAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 303
           V+Q F  +   +G G TF I++G+  L  +FV  F  ET+GLT  +++ M+++RA
Sbjct: 392 VSQVFPILMGAIGVGGTFTIISGLMALGCIFVYFFAVETKGLTLEQIDNMFRKRA 446

Leishmania donovani (taxid: 5661)

>sp|P30606|ITR2_YEAST Myo-inositol transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ITR2 PE=1 SV=2

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 176/318 (55%), Gaps = 27/318 (8%)

Query: 4   LGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLED 63
           L  V   WR ++G+S +P ++QF    F+P++PR+  MK D ++A +VL + Y     ED
Sbjct: 261 LNHVKNGWRILVGLSLIPTVLQFSFFCFLPDTPRYYVMKGDLKRAKMVLKRSY--VNTED 318

Query: 64  EI-----DHLSAAAEEELRKKKTVRYLDVFKS-----KEIRLAFLAGAGLQAFQQFTGIN 113
           EI     + LS+  +    K    ++ ++ K         R A + G GLQA QQFTG N
Sbjct: 319 EIIDQKVEELSSLNQSIPGKNPITKFWNMVKELHTVPSNFR-ALIIGCGLQAIQQFTGWN 377

Query: 114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVI 173
           ++MY+S TI +  GF+++     +S+ V+GTN V T++  + ID  GR+ + L  L G+ 
Sbjct: 378 SLMYFSGTIFETVGFKNSSA---VSIIVSGTNFVFTLIAFFCIDKIGRRYILLIGLPGMT 434

Query: 174 ISLVLLSWAF------ISGSSA--SSSGVYGW--IAVIGLALYIAFFAPGMGPVPWTLNS 223
           ++LV+ + AF       +G+ A  +S G   W  + ++ + +Y AF+A G+G VPW   S
Sbjct: 435 VALVICAIAFHFLGIKFNGADAVVASDGFSSWGIVIIVFIIVYAAFYALGIGTVPWQ-QS 493

Query: 224 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 283
           E++P+  RG+    +   NW  +L++A TFLT+ + +    TF   AG+A L+ +F    
Sbjct: 494 ELFPQNVRGVGTSYATATNWAGSLVIASTFLTMLQNITPTGTFSFFAGVACLSTIFCYFC 553

Query: 284 VPETQGLTFLEVEQMWKE 301
            PE  GL   EV+ + K+
Sbjct: 554 YPELSGLELEEVQTILKD 571

Minor transporter for myo-inositol.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 163/287 (56%), Gaps = 11/287 (3%)

Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
           WRWM+G++AVPA++  + + FMPESPRWL  +  +E+A  +++  +D   +E E+  +  
Sbjct: 162 WRWMVGLAAVPAVLLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPKDIEMELAEMK- 220

Query: 71  AAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS 130
             + E  KK+T   L V K+K IR   L G GL  FQQ  GINTV+YY+PTI   AG  +
Sbjct: 221 --QGEAEKKETT--LGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGT 276

Query: 131 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS-GSSA 189
           +  AL  ++ +   N +  I  + LID  GRKKL +    G+ +SL  LS   ++ G SA
Sbjct: 277 SASALG-TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSA 335

Query: 190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 249
           S++    W+ V+ L +YI F+    GPV W L  E++P + RG   G +  V   +NLIV
Sbjct: 336 STA----WMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIV 391

Query: 250 AQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVE 296
           +  F  +   +G    F++ + I +L+  F    VPET+G +  E+E
Sbjct: 392 SLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIE 438

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/189 (43%), Positives = 116/189 (61%), Gaps = 6/189 (3%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
             PGTWRWMLGVSA+PAIIQF LML +PESPRWL+    K ++  +L +IY    +E EI
Sbjct: 180 HTPGTWRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEI 239

Query: 66  DHLSAAAEEELRKKKTV------RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYS 119
             L  +   E   +  +      +      +  +R    AG  +Q  QQF GINTVMYYS
Sbjct: 240 AALKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYS 299

Query: 120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL 179
           PTI+Q AG+ SN+ A+ L+L  +G NAVG++V +  +D +GR+KL + S+ G+I  LV+L
Sbjct: 300 PTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVIL 359

Query: 180 SWAFISGSS 188
           +  F   S+
Sbjct: 360 AAVFNEASN 368

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 117/184 (63%), Gaps = 6/184 (3%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
             PGTWRWMLGV+ VPAI+QFVLML +PESPRWL+ K    ++  +L +IY    +E E+
Sbjct: 181 HTPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEM 240

Query: 66  DHLSAAAEEELRKKKTV------RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYS 119
           + L  + E E   +  +      +    F +  +R    AG  +Q  QQF GINTVMYYS
Sbjct: 241 EALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYS 300

Query: 120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL 179
           P+IVQ AG+ SN+ A+ LSL  +G NA+G+IV +  +D +GR+KL + S+ G+I  L++L
Sbjct: 301 PSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIIL 360

Query: 180 SWAF 183
           +  F
Sbjct: 361 ATVF 364

Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol.

Arabidopsis thaliana (taxid: 3702)

>sp|P45598|ARAE_KLEOX Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 160/294 (54%), Gaps = 14/294 (4%)

Query: 9   GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA-RLEDEIDH 67
           G WR MLGV A+PA++  +L++F+P SPRWL  K    +A  VL  + D + +  DE++ 
Sbjct: 175 GNWRAMLGVLALPAVVLIILVIFLPNSPRWLAEKGRHVEAEEVLRMLRDTSEKARDELNE 234

Query: 68  LSAAAEEELRKKKTVRYLDVFK-SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA 126
           +     E L+ K+    L  FK ++ +R A   G  LQA QQFTG+N +MYY+P I +MA
Sbjct: 235 I----RESLKLKQGGWAL--FKVNRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMA 288

Query: 127 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK---KLALSSLAGVIISLVLLSWAF 183
           GF + +  ++ +L V  T    T + ++ +D  GRK   K+  S +A   I  ++L +  
Sbjct: 289 GFTTTEQQMVATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMA---IGTLVLGYCL 345

Query: 184 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW 243
           +   + ++S    W++V    + IA +A    PV W L SE+ P + R      S T NW
Sbjct: 346 MQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNW 405

Query: 244 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ 297
           +SN+I+  TFLT+ + +G   TF +   + V  +      +PET+ +T   +E+
Sbjct: 406 VSNMIIGATFLTLLDAIGAAGTFWLYTALNVAFIGVTFWLIPETKNVTLEHIER 459

Uptake of arabinose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Klebsiella oxytoca (taxid: 571)

>sp|P30605|ITR1_YEAST Myo-inositol transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ITR1 PE=1 SV=2

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 175/317 (55%), Gaps = 25/317 (7%)

Query: 4   LGQVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD------ 57
           L  V   WR ++G+S +P  +QF  + F+P++PR+  MK D  +A  VL + Y       
Sbjct: 238 LNYVNNGWRILVGLSLIPTAVQFTCLCFLPDTPRYYVMKGDLARATEVLKRSYTDTSEEI 297

Query: 58  IARLEDEIDHLSAAAEEELRKKK---TVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINT 114
           I R  +E+  L+ +   +   +K   T++ L    S  +R A + G GLQA QQFTG N+
Sbjct: 298 IERKVEELVTLNQSIPGKNVPEKVWNTIKELHTVPSN-LR-ALIIGCGLQAIQQFTGWNS 355

Query: 115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVII 174
           +MY+S TI +  GF+++     +S+ V+GTN + T+V  + ID  GR+ + L  L G+ +
Sbjct: 356 LMYFSGTIFETVGFKNSSA---VSIIVSGTNFIFTLVAFFSIDKIGRRTILLIGLPGMTM 412

Query: 175 SLVLLSWAF------ISGSSAS--SSGVYGW--IAVIGLALYIAFFAPGMGPVPWTLNSE 224
           +LV+ S AF        G+ A   SSG   W  + ++ + ++ AF+A G+G VPW   SE
Sbjct: 413 ALVVCSIAFHFLGIKFDGAVAVVVSSGFSSWGIVIIVFIIVFAAFYALGIGTVPWQ-QSE 471

Query: 225 VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV 284
           ++P+  RGI    +   NW  +L++A TFLT+ + +    TF   AG++ L+ +F     
Sbjct: 472 LFPQNVRGIGTSYATATNWAGSLVIASTFLTMLQNITPAGTFAFFAGLSCLSTIFCYFCY 531

Query: 285 PETQGLTFLEVEQMWKE 301
           PE  GL   EV+ + K+
Sbjct: 532 PELSGLELEEVQTILKD 548

Major transporter for myo-inositol.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
255577741	307	sugar transporter, putative [Ricinus com	0.959	1.0	0.804	1e-145
224133102	489	predicted protein [Populus trichocarpa]	0.978	0.640	0.785	1e-145
297824309	521	hypothetical protein ARALYDRAFT_322009 [	0.984	0.604	0.787	1e-143
2289003	521	putative membrane transporter [Arabidops	0.984	0.604	0.775	1e-143
30689342	509	putative inositol transporter 1 [Arabido	0.984	0.618	0.775	1e-142
224106503	307	predicted protein [Populus trichocarpa]	0.956	0.996	0.784	1e-140
449468830	495	PREDICTED: inositol transporter 1-like [	0.965	0.624	0.776	1e-139
356576905	499	PREDICTED: probable inositol transporter	0.959	0.615	0.724	1e-130
357501429	500	hypothetical protein MTR_7g005910 [Medic	0.981	0.628	0.711	1e-130
242076330	506	hypothetical protein SORBIDRAFT_06g02107	0.965	0.610	0.704	1e-128

>gi|255577741|ref|XP_002529745.1| sugar transporter, putative [Ricinus communis] gi|223530743|gb|EEF32611.1| sugar transporter, putative [Ricinus communis]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/307 (80%), Positives = 279/307 (90%)

Query: 14  MLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAE 73
           MLGV+ VPA+IQF LML MPESPRWLFMK DK+KA+++++KIYD+ARLEDEIDHL+A+AE
Sbjct: 1   MLGVAGVPAVIQFCLMLCMPESPRWLFMKDDKDKAVIIMAKIYDLARLEDEIDHLAASAE 60

Query: 74  EELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQL 133
           EE +K+ TV  +DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQL
Sbjct: 61  EESQKRNTVSCMDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFSSNQL 120

Query: 134 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 193
           ALLLSL VA  NA GTI+GIYLIDHFGR KLALSSL GVI+SL +L+ AF   SS SSSG
Sbjct: 121 ALLLSLIVAAMNAAGTILGIYLIDHFGRTKLALSSLTGVIVSLFILAGAFFGQSSDSSSG 180

Query: 194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 253
           +YGW+AV+GLALYIAFFAPGMGPVPWT+NSE+YPE YRGICGGMSATVNWISNLIVAQTF
Sbjct: 181 IYGWLAVVGLALYIAFFAPGMGPVPWTVNSEIYPEAYRGICGGMSATVNWISNLIVAQTF 240

Query: 254 LTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESL 313
           L+VA  VGTGATFLILAG+A+ A+VF+ILFVPET+GLTF+EVEQ+WKERAWGSS NTESL
Sbjct: 241 LSVANAVGTGATFLILAGVAIAAIVFIILFVPETKGLTFVEVEQIWKERAWGSSYNTESL 300

Query: 314 LEHGNSS 320
           LE GN +
Sbjct: 301 LERGNET 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133102|ref|XP_002327961.1| predicted protein [Populus trichocarpa] gi|222837370|gb|EEE75749.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 279/313 (89%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           +VPGTWRWM+GV+AVPA+IQF +ML +PESPRWLFMK +K KAI +LSKIYD+ARL+DEI
Sbjct: 177 EVPGTWRWMVGVAAVPAVIQFCIMLCLPESPRWLFMKDNKAKAIAILSKIYDVARLQDEI 236

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           DHLS   EEE +K+  V+  DVFKSKEIRLAFL GAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 237 DHLSITEEEECQKRNDVKISDVFKSKEIRLAFLVGAGLQAFQQFTGINTVMYYSPTIVQM 296

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF SNQLALLLSL +A  NA GT++GIYLIDHFGRKKLA+SSLAGVI SL +L+ AF  
Sbjct: 297 AGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRKKLAISSLAGVIASLFILAGAFFG 356

Query: 186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 245
            SS SS+ +YGWIAV+GLAL IA F+PGMGPVPWT+NSE+YPEQYRGICGGMSATVNWIS
Sbjct: 357 KSSGSSNELYGWIAVLGLALCIACFSPGMGPVPWTVNSEIYPEQYRGICGGMSATVNWIS 416

Query: 246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWG 305
           NLIVAQTFL++AE VGTG+TFL+LAGIAVLAVVFVI++VPET GL F+EVEQ+WKERAWG
Sbjct: 417 NLIVAQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIMYVPETMGLAFVEVEQIWKERAWG 476

Query: 306 SSLNTESLLEHGN 318
           SS NTESLLE GN
Sbjct: 477 SSYNTESLLEQGN 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824309|ref|XP_002880037.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata] gi|297325876|gb|EFH56296.1| hypothetical protein ARALYDRAFT_322009 [Arabidopsis lyrata subsp. lyrata]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/325 (78%), Positives = 282/325 (86%), Gaps = 10/325 (3%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA+IQFVLMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEI
Sbjct: 197 QVPGTWRWMLGVSGVPAVIQFVLMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEI 256

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           DHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 257 DHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 316

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF SNQLAL LSL VA  NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F  
Sbjct: 317 AGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFK 376

Query: 186 GSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244
            S ASS  G+YGW+AV+GLALYIAFFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWI
Sbjct: 377 QSDASSDGGLYGWLAVLGLALYIAFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWI 436

Query: 245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA- 303
           SNLIVAQTFLT+AE  GTG TFLILAGIA LAV+FVI+FVPETQGLTF EVEQ+WKERA 
Sbjct: 437 SNLIVAQTFLTIAEAAGTGMTFLILAGIAFLAVIFVIVFVPETQGLTFSEVEQIWKERAY 496

Query: 304 -----WGSSL---NTESLLEHGNSS 320
                WGSS    N E LLE G+ S
Sbjct: 497 GDISGWGSSSDSNNMEGLLEQGSQS 521

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2289003|gb|AAB64332.1| putative membrane transporter [Arabidopsis thaliana]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/325 (77%), Positives = 281/325 (86%), Gaps = 10/325 (3%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEI
Sbjct: 197 QVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEI 256

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           DHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 257 DHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 316

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF SNQLAL LSL VA  NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F  
Sbjct: 317 AGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFK 376

Query: 186 GSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244
            S  SS  G+YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWI
Sbjct: 377 QSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWI 436

Query: 245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW 304
           SNLIVAQTFLT+AE  GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WKERA+
Sbjct: 437 SNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAY 496

Query: 305 GS---------SLNTESLLEHGNSS 320
           G+         S N E LLE G+ S
Sbjct: 497 GNISGWGSSSDSNNMEGLLEQGSQS 521

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689342|ref|NP_850393.1| putative inositol transporter 1 [Arabidopsis thaliana] gi|75331205|sp|Q8VZR6.1|INT1_ARATH RecName: Full=Inositol transporter 1 gi|17380890|gb|AAL36257.1| putative membrane transporter protein [Arabidopsis thaliana] gi|20465939|gb|AAM20155.1| putative membrane transporter protein [Arabidopsis thaliana] gi|84617967|emb|CAJ00303.1| inositol transporter 1 [Arabidopsis thaliana] gi|330255158|gb|AEC10252.1| putative inositol transporter 1 [Arabidopsis thaliana]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/325 (77%), Positives = 281/325 (86%), Gaps = 10/325 (3%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEI
Sbjct: 185 QVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEI 244

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           DHLSAA EEE ++K+TV YLDVF+SKE+RLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 245 DHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 304

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF SNQLAL LSL VA  NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F  
Sbjct: 305 AGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFK 364

Query: 186 GSSASSS-GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244
            S  SS  G+YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWI
Sbjct: 365 QSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWI 424

Query: 245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW 304
           SNLIVAQTFLT+AE  GTG TFLILAGIAVLAV+FVI+FVPETQGLTF EVEQ+WKERA+
Sbjct: 425 SNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAY 484

Query: 305 GS---------SLNTESLLEHGNSS 320
           G+         S N E LLE G+ S
Sbjct: 485 GNISGWGSSSDSNNMEGLLEQGSQS 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106503|ref|XP_002333672.1| predicted protein [Populus trichocarpa] gi|222837972|gb|EEE76337.1| predicted protein [Populus trichocarpa]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/306 (78%), Positives = 272/306 (88%)

Query: 14  MLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAE 73
           M+GV+AVPA+IQF +ML +PESPRWLFMK +K KAI +LSKIYD+ARL+DEIDHLS   E
Sbjct: 1   MVGVAAVPAVIQFCIMLCLPESPRWLFMKDNKAKAIAILSKIYDVARLQDEIDHLSITEE 60

Query: 74  EELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQL 133
           EE +K+  V+  DVFKSKEIRLAFL GAGLQAFQQFTGINTVMYYSPTIVQMAGF SNQL
Sbjct: 61  EECQKRNDVKISDVFKSKEIRLAFLVGAGLQAFQQFTGINTVMYYSPTIVQMAGFSSNQL 120

Query: 134 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 193
           ALLLSL +A  NA GT++GIYLIDHFGRKKLA+SSLAGVI SL +L+ AF   SS SS+ 
Sbjct: 121 ALLLSLVIAAMNAAGTVLGIYLIDHFGRKKLAISSLAGVIASLFILAGAFFGKSSGSSNE 180

Query: 194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF 253
           +YGWIAV+GLALYIA F+PGMGPVPWT+NSE+YPEQYRGICGGMSATVNWISNLIVAQTF
Sbjct: 181 LYGWIAVLGLALYIACFSPGMGPVPWTVNSEIYPEQYRGICGGMSATVNWISNLIVAQTF 240

Query: 254 LTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESL 313
           L++AE VGTG+TFL+LAGIAVLAVVFVI++VPET GL F+EVEQ+WKERAWGSS NTESL
Sbjct: 241 LSIAEAVGTGSTFLMLAGIAVLAVVFVIMYVPETMGLAFVEVEQIWKERAWGSSYNTESL 300

Query: 314 LEHGNS 319
           LE GN 
Sbjct: 301 LEQGND 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468830|ref|XP_004152124.1| PREDICTED: inositol transporter 1-like [Cucumis sativus] gi|449484700|ref|XP_004156956.1| PREDICTED: inositol transporter 1-like [Cucumis sativus]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/309 (77%), Positives = 271/309 (87%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA+IQFV MLF+PESPRWLFMK +K KA  VLSKIYD  RLEDEI
Sbjct: 185 QVPGTWRWMLGVSGVPAVIQFVFMLFLPESPRWLFMKDEKSKATAVLSKIYDFPRLEDEI 244

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           D+LS+  EEE  KK  V Y+DVFKSKEIR+AFLAGAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 245 DYLSSQLEEEKHKKINVSYMDVFKSKEIRIAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 304

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF+SNQLALLLSL VA  NA GT++GIYLIDH GRKKLA+SSL+GVI+SL +LS A  +
Sbjct: 305 AGFRSNQLALLLSLIVAAMNAAGTVLGIYLIDHVGRKKLAISSLSGVIVSLAILSGALFA 364

Query: 186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 245
           G   S++G+ G IAVIGLALYIAFF+PGMGPVPWT+NSE+YPE YRG+CGGMSATVNWIS
Sbjct: 365 GQYGSTNGLNGCIAVIGLALYIAFFSPGMGPVPWTVNSEIYPEAYRGLCGGMSATVNWIS 424

Query: 246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWG 305
           NLIVAQTFL++AE+ GTG TFLI A IAVLA+VFV+++VPETQGLTF EVE++WKERAWG
Sbjct: 425 NLIVAQTFLSLAEVAGTGLTFLIFAAIAVLAIVFVVVYVPETQGLTFEEVERIWKERAWG 484

Query: 306 SSLNTESLL 314
              NTESLL
Sbjct: 485 RDSNTESLL 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576905|ref|XP_003556570.1| PREDICTED: probable inositol transporter 1-like [Glycine max]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/309 (72%), Positives = 271/309 (87%), Gaps = 2/309 (0%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA++QF LML +PESPRWLF+K+ KE+AI VL+KIYD ARLEDE+
Sbjct: 186 QVPGTWRWMLGVSGVPAVVQFFLMLLLPESPRWLFIKNRKEEAITVLAKIYDFARLEDEV 245

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           + L+  +E++ +++  +RY DVFKSKEIRLAFLAGAGLQAFQQF GINTVMYYSPTIVQM
Sbjct: 246 NLLTTQSEKDCQRRDGIRYWDVFKSKEIRLAFLAGAGLQAFQQFIGINTVMYYSPTIVQM 305

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGFQSN+LALLLSL VAG NA G+++GIYLIDH GR+KLAL SL GVI SL++L+ +F +
Sbjct: 306 AGFQSNELALLLSLIVAGMNAAGSVLGIYLIDHAGRRKLALYSLGGVIASLIILALSFFN 365

Query: 186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 245
            S  S SG+YGW+A++GLALYIAFF+PGMGPVPWT+NSEVYPE+YRGICGGMSATVNW+S
Sbjct: 366 QS--SESGLYGWLAILGLALYIAFFSPGMGPVPWTVNSEVYPEEYRGICGGMSATVNWVS 423

Query: 246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWG 305
           NLIV Q+FL+VA  VGTG TFLI+A IAVLA +FV+++VPET+GLTF EVE +WKERAWG
Sbjct: 424 NLIVVQSFLSVAAAVGTGPTFLIIAIIAVLAFMFVVVYVPETKGLTFDEVELLWKERAWG 483

Query: 306 SSLNTESLL 314
            + + +SLL
Sbjct: 484 KNPDAQSLL 492

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501429|ref|XP_003621003.1| hypothetical protein MTR_7g005910 [Medicago truncatula] gi|124365541|gb|ABN09775.1| General substrate transporter [Medicago truncatula] gi|355496018|gb|AES77221.1| hypothetical protein MTR_7g005910 [Medicago truncatula]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/315 (71%), Positives = 275/315 (87%), Gaps = 1/315 (0%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           QVPGTWRWMLGVS VPA+IQF+ MLF+PESPRWLF+K+ K +A+ V+SKIYD++RLEDEI
Sbjct: 187 QVPGTWRWMLGVSGVPALIQFICMLFLPESPRWLFIKNRKNEAVDVISKIYDLSRLEDEI 246

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           D L+A +E+E +++ T+++  VF+SKE RLAFL G GL AFQQFTGINTVMYYSPTIVQM
Sbjct: 247 DFLTAQSEQERQRRSTIKFWHVFRSKETRLAFLVGGGLLAFQQFTGINTVMYYSPTIVQM 306

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AGF +NQLALLLSL VAG NAVGTI+GIYLID+ GRKKLALSSLAGVI SL++LS AF  
Sbjct: 307 AGFHANQLALLLSLIVAGMNAVGTILGIYLIDNTGRKKLALSSLAGVIASLIMLSVAFYK 366

Query: 186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 245
            SS S++ VYGW+AVIGL LYI FF+PGMGPVPWT+NSE+YPE+YRGICGGM+ATV WIS
Sbjct: 367 QSS-STNEVYGWLAVIGLGLYIGFFSPGMGPVPWTINSEIYPEEYRGICGGMAATVCWIS 425

Query: 246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWG 305
           NLIV+++FL++A+ +G  +TFLI+A IAV+A +FV+L+VPETQGLTF EVE +WKERAWG
Sbjct: 426 NLIVSESFLSIADAIGIASTFLIIAVIAVVAFLFVLLYVPETQGLTFDEVELIWKERAWG 485

Query: 306 SSLNTESLLEHGNSS 320
            + NT++LLE G+ S
Sbjct: 486 KNPNTQNLLEQGSQS 500

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076330|ref|XP_002448101.1| hypothetical protein SORBIDRAFT_06g021070 [Sorghum bicolor] gi|241939284|gb|EES12429.1| hypothetical protein SORBIDRAFT_06g021070 [Sorghum bicolor]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/318 (70%), Positives = 265/318 (83%), Gaps = 9/318 (2%)

Query: 6   QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           +VPGTWRWMLGV+AVPAI+QFVLMLF+PESPRWL+ K +K KAI VL KIYD  RLE+E+
Sbjct: 184 EVPGTWRWMLGVAAVPAIVQFVLMLFLPESPRWLYWKDEKAKAIAVLEKIYDSDRLEEEV 243

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
           + L++++  E +      YLDVFKSKE+RLAF AGAGLQAFQQFTGINTVMYYSPTIVQM
Sbjct: 244 ELLASSSMHEFQSNNAGSYLDVFKSKELRLAFFAGAGLQAFQQFTGINTVMYYSPTIVQM 303

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI- 184
           AGF SN+LALLLSL VA  NA GTIVGIYLID  GR++LAL+SL+GV+ISLV+L+ AFI 
Sbjct: 304 AGFSSNRLALLLSLIVAAMNAAGTIVGIYLIDRCGRRRLALTSLSGVVISLVILALAFIL 363

Query: 185 --------SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGG 236
                   S ++ +  GV GW AV GLALYIAFF+PGMGPVPW +NSE+YPE YRG+CGG
Sbjct: 364 QSSSGLCMSAANGTCQGVLGWFAVAGLALYIAFFSPGMGPVPWAVNSEIYPEAYRGMCGG 423

Query: 237 MSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVE 296
           MSATVNWISNLIVAQTFL++  LVGTG TFLI+AGIAVLA +FV ++VPET+GL+F +VE
Sbjct: 424 MSATVNWISNLIVAQTFLSIVGLVGTGPTFLIIAGIAVLAFIFVAMYVPETKGLSFEQVE 483

Query: 297 QMWKERAWGSSLNTESLL 314
           QMWKERAWG+S N + LL
Sbjct: 484 QMWKERAWGNSGNCQRLL 501

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.984	0.618	0.64	1.6e-104
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.553	0.305	0.444	4.9e-66
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.55	0.303	0.401	1.4e-56
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.55	0.302	0.390	1.2e-55
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.540	0.271	0.350	2.9e-46
RGD|621814	637	Slc2a13 "solute carrier family	0.543	0.273	0.340	4.8e-46
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.543	0.268	0.346	3.7e-45
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.543	0.268	0.340	7.9e-45
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.540	0.265	0.350	1.3e-44
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.868	0.600	0.305	3.9e-37

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 208/325 (64%), Positives = 233/325 (71%)

Query:     6 QVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
             QVPGTWRWMLGVS VPA+IQF+LMLFMPESPRWLFMK+ K +AI VL++ YDI+RLEDEI
Sbjct:   185 QVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEI 244

Query:    66 DHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQM 125
             DHLSAA EEE ++K+TV YLDVF+SKE+R                 INTVMYYSPTIVQM
Sbjct:   245 DHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 304

Query:   126 AGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIX 185
             AGF SNQ            NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F  
Sbjct:   305 AGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFK 364

Query:   186 XXXXXXXX-VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244
                      +YGW+AV+GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVNWI
Sbjct:   365 QSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWI 424

Query:   245 SNLIVAQTFLTVAELVGTGATXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQMWKERA- 303
             SNLIVAQTFLT+AE  GTG T                   PETQGLTF EVEQ+WKERA 
Sbjct:   425 SNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAY 484

Query:   304 -----WGSSL---NTESLLEHGNSS 320
                  WGSS    N E LLE G+ S
Sbjct:   485 GNISGWGSSSDSNNMEGLLEQGSQS 509

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 4.9e-66, Sum P(2) = 4.9e-66
 Identities = 80/180 (44%), Positives = 109/180 (60%)

Query:     7 VPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEID 66
             V GTWRWMLG++ +PA++QFVLM  +PESPRWL+ K  +E+A  +L +IY    +E EI 
Sbjct:   183 VTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIR 242

Query:    67 HLSAAAEEELRKK---KTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIV 123
              L  + E E+ ++   + +  + + K+K +R                 INTVMYYSPTIV
Sbjct:   243 ALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIV 302

Query:   124 QMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 183
             Q+AGF SN+          G NA G+I+ IY ID  GRKKL + SL GVIISL +L+  F
Sbjct:   303 QLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVF 362

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 73/182 (40%), Positives = 102/182 (56%)

Query:     8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDH 67
             PGTWRWMLGVSA+PAIIQF LML +PESPRWL+    K ++  +L +IY    +E EI  
Sbjct:   182 PGTWRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAA 241

Query:    68 LSAAAEEELRKKKTV--RYLDVFK----SKEIRXXXXXXXXXXXXXXXXXINTVMYYSPT 121
             L  +   E   +  +   + D  +    +  +R                 INTVMYYSPT
Sbjct:   242 LKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPT 301

Query:   122 IVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 181
             I+Q AG+ SN+          G NAVG++V +  +D +GR+KL + S+ G+I  LV+L+ 
Sbjct:   302 ILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAA 361

Query:   182 AF 183
              F
Sbjct:   362 VF 363

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
 Identities = 71/182 (39%), Positives = 103/182 (56%)

Query:     8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDH 67
             PGTWRWMLGV+ VPAI+QFVLML +PESPRWL+ K    ++  +L +IY    +E E++ 
Sbjct:   183 PGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEMEA 242

Query:    68 LSAAAEEELRKKKTV------RYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPT 121
             L  + E E   +  +      +    F +  +R                 INTVMYYSP+
Sbjct:   243 LKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPS 302

Query:   122 IVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSW 181
             IVQ AG+ SN+          G NA+G+IV +  +D +GR+KL + S+ G+I  L++L+ 
Sbjct:   303 IVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILAT 362

Query:   182 AF 183
              F
Sbjct:   363 VF 364

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 62/177 (35%), Positives = 99/177 (55%)

Query:    11 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
             WR+MLG++A+PA+IQF+  LF+PESPRWL  K   +KA  +LS++     +++E D +  
Sbjct:   227 WRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRN 286

Query:    71 AAEEELRKKKTVR---YLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAG 127
             + EEE  K+ T        +      R                 INT+MYYS TI+QM+G
Sbjct:   287 SIEEE-EKEATAAGPIICRMLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSG 345

Query:   128 FQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 184
              + ++           TN + T+VG++L++  GR+KL   SLAG  ++L++L+  F+
Sbjct:   346 VEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 402

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 295 (108.9 bits), Expect = 4.8e-46, Sum P(2) = 4.8e-46
 Identities = 60/176 (34%), Positives = 98/176 (55%)

Query:    11 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
             WR+MLG++A+PA+IQF+  LF+PESPRWL  K   +KA  +LS++     +++E D +  
Sbjct:   227 WRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRN 286

Query:    71 AAEEELRKKKTVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGF 128
             + EEE ++      +   +      R                 INT+MYYS TI+QM+G 
Sbjct:   287 SIEEEEKEASAAGPIICRMLSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGV 346

Query:   129 QSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 184
             + ++           TN + T+VG++L++  GR+KL   SLAG  ++L +L+  F+
Sbjct:   347 EDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFL 402

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 3.7e-45, Sum P(2) = 3.7e-45
 Identities = 61/176 (34%), Positives = 98/176 (55%)

Query:    11 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
             WR+MLG++AVPA+IQF   LF+PESPRWL  K   +KA  +LS++     +++E D +  
Sbjct:   238 WRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKN 297

Query:    71 AAEEELRKKKTVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGF 128
               EEE ++  +   +   +      R                 INT+MYYS TI+QM+G 
Sbjct:   298 NIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGV 357

Query:   129 QSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 184
             + ++           TN + T+VG++L++  GR+KL   SLAG  ++L++L+  F+
Sbjct:   358 EDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFV 413

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 7.9e-45, Sum P(2) = 7.9e-45
 Identities = 60/176 (34%), Positives = 98/176 (55%)

Query:    11 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
             WR+MLG++A+PA+IQF   LF+PESPRWL  K   +KA  +LS++     +++E D +  
Sbjct:   238 WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKN 297

Query:    71 AAEEELRKKKTVRYL--DVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGF 128
               EEE ++  +   +   +      R                 INT+MYYS TI+QM+G 
Sbjct:   298 NIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGV 357

Query:   129 QSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 184
             + ++           TN + T+VG++L++  GR+KL   SLAG  ++L++L+  F+
Sbjct:   358 EDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFL 413

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 288 (106.4 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 62/177 (35%), Positives = 99/177 (55%)

Query:    11 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
             WR+MLG++A+PA+IQF   LF+PESPRWL  K   +KA  +LS++     +++E D +  
Sbjct:   242 WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKN 301

Query:    71 AAEEELRKKKT---VRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAG 127
               EEE ++  +   V Y  +      R                 INT+MYYS TI+QM+G
Sbjct:   302 NIEEEEKEVGSAGPVIYR-MLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSG 360

Query:   128 FQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI 184
              + ++           TN + T+VG++L++  GR+KL   SLAG  ++L++L+  F+
Sbjct:   361 VEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLALGFL 417

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 88/288 (30%), Positives = 144/288 (50%)

Query:    11 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIA-RLEDEIDHLS 69
             WR M     +PA +  + M+ +P SPRW+F +  +EKA+ +L K+       E E++H+ 
Sbjct:   172 WRSMFAAGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIR 231

Query:    70 AAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQ 129
             A+ +++    +T+     F SK IR                 INTV+YY+PTI++M GFQ
Sbjct:   232 ASLQQQKGDWRTL-----F-SKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQ 285

Query:   130 SNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXX 189
             ++Q              + TI+ + LID  GR+ L    +  + +SL++LSW+F      
Sbjct:   286 ASQTAILATMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAMTVSLLVLSWSF---KVH 342

Query:   190 XXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV 249
                    WIA   L ++I+ F+  +GP+ W + SE++P + RG+   + A  NW SN +V
Sbjct:   343 GHMDYMRWIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLV 402

Query:   250 AQTFLTVAELVGTGATXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQ 297
               TFLT+ E +G   T                   PET+G+T  ++E+
Sbjct:   403 TITFLTLIEYLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQIEE 450

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZR6	INT1_ARATH	No assigned EC number	0.7753	0.9843	0.6188	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-65
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-64
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-47
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-14
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-11
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	7e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-07
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-04
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	6e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	7e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.001
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.001
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.002
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	0.002

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  212 bits (542), Expect = 3e-65
 Identities = 113/290 (38%), Positives = 160/290 (55%), Gaps = 8/290 (2%)

Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD----IARLEDEID 66
           WR  LG+  +PA + F+ + F+PESPRWL  K   E+A   L+++         L DE++
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELE 254

Query: 67  HLSAAAEEELRKKKTVRYLDVFKSKE-IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
            +      E R  +   +  +F S   IR     G  LQ FQQFTGIN +MYYSPTI + 
Sbjct: 255 LIDIKRSIEKRSVQP-SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN 313

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS 185
           AG  S   A L+S+ V   N   T V I+L+D FGR+ L L   AG+ I L +L     S
Sbjct: 314 AGV-STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372

Query: 186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 245
             + SS    G +A++ + L+IAFFA G GPVPW + SE++P   R     ++   NW++
Sbjct: 373 FVTGSSKSS-GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLA 431

Query: 246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEV 295
           N IV   F T+ E +G G  F+   G+ VL ++FV  F+PET+G T  E+
Sbjct: 432 NFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  209 bits (535), Expect = 1e-64
 Identities = 108/292 (36%), Positives = 170/292 (58%), Gaps = 8/292 (2%)

Query: 8   PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDH 67
              WR  LG+  VPAI+  + +LF+PESPRWL +K   E+A  VL+K+  ++ ++ EI  
Sbjct: 166 SDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQE 225

Query: 68  LSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 127
              + E    + +   +L++F+ K +R   L G  LQ FQQ TGIN + YYSPTI +  G
Sbjct: 226 EKDSLERS-VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG 284

Query: 128 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGS 187
                 +LL+++ V   N V T + I+L+D FGR+ L L   AG+ I  ++L  A + G 
Sbjct: 285 LSD---SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALL-GV 340

Query: 188 SASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL 247
           + S       +A++ + L+IAFFA G GPVPW + SE++P   R     ++   NW++N 
Sbjct: 341 AKSKGAGI--VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANF 398

Query: 248 IVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMW 299
           ++   F  +   +G G  FL+ AG+ VL ++FV  FVPET+G T  E+++++
Sbjct: 399 LIGFLFPIITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  164 bits (418), Expect = 4e-47
 Identities = 92/299 (30%), Positives = 147/299 (49%), Gaps = 21/299 (7%)

Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
           WR+M    A+PA++  +L+ F+PE+PR+L  +  +E+A  +L KI         +  +  
Sbjct: 193 WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKH 252

Query: 71  AAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS 130
           + +    +K   + L            + G  L  FQQF GIN V+YY+P I +  G  S
Sbjct: 253 SLDH--GRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG-AS 304

Query: 131 NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS 190
             +ALL ++ V   N   T++ I  +D FGRK L +    G+ I +  L  AF + +   
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-- 362

Query: 191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA 250
                G +A++ +  Y+A FA   GPV W L SE++P   RG    ++    WI+N  V+
Sbjct: 363 -----GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVS 417

Query: 251 QTF------LTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERA 303
            TF        +      G ++ I   + VLA +F+  FVPET+G T  E+E +W+   
Sbjct: 418 WTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPET 476

Length = 479

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 33/290 (11%)

Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
           WRW+    ++P  + F+L  F+PESPRWL  +   E+A+ +L +I  I   +   + LS 
Sbjct: 242 WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSL 301

Query: 71  AAEEELR-KKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQ 129
           + E++L   KK   +LD+F++  +R   L          FT      YY   +       
Sbjct: 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTL----CLMMLWFT--TAFSYYGLVLDLGNLGG 355

Query: 130 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLLSWAFISGSS 188
           +  L L +S  V        ++ + LID  GR+  +A S L   +  L+LL   F+    
Sbjct: 356 NIYLDLFISGLV---ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL---FVPVD- 408

Query: 189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR----GICGGMSATVNWI 244
                   ++    LA+   F       + +   +E+YP   R    G+C  M+   + I
Sbjct: 409 ------LYFL-RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII 461

Query: 245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE 294
           S  +V   +L    L       ++  G+A+LA +   LF+PET+G+   E
Sbjct: 462 SPFLV---YLGEKWLF---LPLVLFGGLALLAGILT-LFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 13/188 (6%)

Query: 98  LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID 157
           L    L  F    G   ++ Y P  +Q     S   A LL         +G ++G  L D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236

Query: 158 HFGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP 216
             GR++ L L  L    + L+LL+ A                 ++   L + F      P
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAP------------SLALLLVALLLLGFGLGFAFP 284

Query: 217 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 276
              TL SE+ P + RG   G+  T   +   +       + +  G G  FLILA +A+LA
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344

Query: 277 VVFVILFV 284
            + ++L  
Sbjct: 345 ALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 78/310 (25%), Positives = 127/310 (40%), Gaps = 38/310 (12%)

Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
           WR ++G  AVPA++     L +PE+PR+    +   +            ++E E D +  
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEK 262

Query: 71  AAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQ---QFTGIN-------TVMYYSP 120
           A+      K +         K      L G     F     F G+N       + + YSP
Sbjct: 263 ASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSP 322

Query: 121 TIVQMAGFQS---NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV 177
                  ++      +  L+ +A+AGT   G  V ++L+D  GRK +    L G  I  V
Sbjct: 323 PAATNNAYEELYKTAVGNLI-IALAGT-VPGYWVTVFLVDIIGRKPI---QLMGFFILTV 377

Query: 178 LLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP--VPWTLNSEVYPEQYRGICG 235
           L    F+ G + +    +G++A+  LA + A F P      VP     EV+P +YR    
Sbjct: 378 LF---FVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVP----GEVFPTRYRSTAH 430

Query: 236 GMSATVNWISNLIVAQTFLTVAE----------LVGTGATFLILAGIAVLAVVFVILFVP 285
           G+SA       +I    FL +A+           +  G    I A    L ++F +L +P
Sbjct: 431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL-IP 489

Query: 286 ETQGLTFLEV 295
           ET+G +  E+
Sbjct: 490 ETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 55/280 (19%), Positives = 106/280 (37%), Gaps = 32/280 (11%)

Query: 10  TWRWMLGVSAVPAIIQFVLMLFM----PESPRWLFMKSDKEKAILVLSKIYDIARLEDEI 65
           +W+W   +  V  II  VL L      P+  +WL   +++EK I+V              
Sbjct: 146 SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL---TEEEKYIVVGGL----------- 191

Query: 66  DHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM 125
             L+    +     K  +  ++ K + +    L    +       G+   + + PT +  
Sbjct: 192 --LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI-----GLGFFLTWFPTYLVQ 244

Query: 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLSWAFI 184
               S   A  ++        +G I+G  L D   R+  +L  +    II+ ++LS    
Sbjct: 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304

Query: 185 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244
           + +  +      + A+  +AL   FF  G G + W L S+  P    G+ GG+  ++  +
Sbjct: 305 ATNYVNIP----YAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNL 358

Query: 245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV 284
             ++       +A   G+ A  L++     L      L +
Sbjct: 359 GGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 13/196 (6%)

Query: 98  LAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID 157
           L    L  F        +    P + +  G  ++Q  L++S    G  A+G+++  YL D
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGY-ALGSLLAGYLSD 59

Query: 158 HFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV 217
            FGR+++ L  L    +  +LL++A                 ++     +      + P 
Sbjct: 60  RFGRRRVLLLGLLLFALGSLLLAFA------------SSLWLLLVGRFLLGLGGGALYPA 107

Query: 218 PWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV 277
              L +E +P + RG   G+ +    +  L+       +AE +G    FLILA + +L  
Sbjct: 108 AAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA 167

Query: 278 VFVILFVPETQGLTFL 293
           + ++  +     L   
Sbjct: 168 LLLLFLLRLLLLLALA 183

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 20/223 (8%)

Query: 11  WRWMLGVSAV-PAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLS 69
           WR +  V  + P ++  +LM F+PES  +L  K   E    +++ I    + E      S
Sbjct: 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAPQMQAEA----QS 224

Query: 70  AAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQ 129
           A  E++  +             +     +    L       G+  +  + P ++   GF 
Sbjct: 225 ALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFS 283

Query: 130 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA 189
            +  A   +L   G   +G+I+  +L D  G +  AL  L G + ++++ S  F      
Sbjct: 284 LSLAATGGALFNFG-GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF------ 336

Query: 190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRG 232
           S + +    A+ G      FF  G     + L +  YP   R 
Sbjct: 337 SPTLLLLLGAIAG------FFVNGGQSGLYALMALFYPTAIRA 373

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 13/185 (7%)

Query: 103 LQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK 162
                              + +  G    ++ LLL+    G  A+   +   L D FGR+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGY-ALAQPLAGRLSDRFGRR 62

Query: 163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN 222
           ++ L  L    + L+LL +A                 ++ L +        + P    L 
Sbjct: 63  RVLLIGLLLFALGLLLLLFA------------SSLWLLLVLRVLQGLGGGALFPAAAALI 110

Query: 223 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 282
           ++ +P + RG   G+ +    +   +       +A L G  A FLILA +A+LA V   L
Sbjct: 111 ADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170

Query: 283 FVPET 287
            +P  
Sbjct: 171 LLPRP 175

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 18/196 (9%)

Query: 48  AILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR--YLDVFKSKEIRLAFLAGAGLQA 105
           A+LVL  +Y    LE+     +   E+   K K  R    +       R  FL G GL  
Sbjct: 177 AVLVLIGLYLRRNLEE-----TPVFEKAQEKHKKKRGPIAETLTKH--RKPFLLGLGL-V 228

Query: 106 FQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA 165
               T    +  Y PT +      S   ALL+ +       +   +   L D  GR+   
Sbjct: 229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-- 286

Query: 166 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV 225
              L    +   LL+   +     S S    +  V+G+AL    +   MG        E+
Sbjct: 287 --VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSF----LPEL 340

Query: 226 YPEQYRGICGGMSATV 241
           +P + R     ++  +
Sbjct: 341 FPTEVRYTGASLAYNL 356

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 18/200 (9%)

Query: 83  RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVA 142
             L + +   + L  LA   L     F       Y  P +  +AGF  + ++L+L LA  
Sbjct: 203 TLLRLLRRPGVLLGLLATF-LFMTGHFALYT---YIRPFLESVAGFSVSAVSLVL-LAFG 257

Query: 143 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG 202
               +G ++G  L D   R+ L  + L   +  L L              G    +A+  
Sbjct: 258 IAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFT-----------GASPALALAL 306

Query: 203 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 262
           L L   F          T  + + P+    + G ++     +   + A     V + +G 
Sbjct: 307 LFL-WGFAFSPALQGLQTRLARLAPDA-ADLAGSLNVAAFNLGIALGAALGGLVLDALGY 364

Query: 263 GATFLILAGIAVLAVVFVIL 282
            AT  + A + +LA++  +L
Sbjct: 365 AATGWVGAALLLLALLLALL 384

Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 16/199 (8%)

Query: 50  LVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQF 109
           L+ + +  +       +       EE        +  + +   + L              
Sbjct: 162 LLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLAL------LLFG 215

Query: 110 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL 169
                ++ Y P   ++ G  +    LLL LA     A+G ++   L D  GR++  L +L
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAGLLLGLA-GLLGAIGRLLLGRLSDRLGRRRRLLLAL 274

Query: 170 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ 229
             +I++ + L+   ++ SS           ++   L + F A  + P    L S++ P++
Sbjct: 275 LLLILAALGLALLSLTESSL---------WLLVALLLLGFGAGLVFPALNALVSDLAPKE 325

Query: 230 YRGICGGMSATVNWISNLI 248
            RG   G+  T   +   +
Sbjct: 326 ERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 10  TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD 57
           +WR  + V A P +     + FMPESPR+       ++A ++L  I+D
Sbjct: 332 SWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHD 379

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 15/171 (8%)

Query: 117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISL 176
           + +P I    G    QL  L S  + G  A G +    L D  GR+++ L S+    +  
Sbjct: 38  FAAPAISAEWGLDPVQLGFLFSAGLIGM-AFGALFFGPLADRIGRRRVLLWSILLFSVFT 96

Query: 177 VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGG 236
           +L + A    ++ +   +  ++A +GL         G+ P    L SE  P+++RG   G
Sbjct: 97  LLCALA----TNVTQLLILRFLAGLGLG--------GLMPNLNALVSEYAPKRFRGTAVG 144

Query: 237 MSATVNWISNLIVAQTFLTVA-ELVGTGATFLILAGIAVLAVVFVILFVPE 286
                 +     V          + G  + F +     +L ++ ++ F+PE
Sbjct: 145 -LMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 86  DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTN 145
            +FK++ + +  L                ++YY   ++  AG  S     +L L      
Sbjct: 217 ALFKNRPLLILLLLYLLNALAMAVRN-GLLLYYFTYVLGNAGLFS-----VLLLIGTIAA 270

Query: 146 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL 205
            +G  +  +L   FG+K+  L  +    I LVLL +        S       + + G+ L
Sbjct: 271 ILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL----PPGSLWLFLVLVVLAGIGL 326

Query: 206 YIAFFAPGM 214
            +A   P  
Sbjct: 327 GLATLLPWA 335

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.92
TIGR00898	505	2A0119 cation transport protein.	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.87
PRK10642	490	proline/glycine betaine transporter; Provisional	99.86
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.79
PRK09952	438	shikimate transporter; Provisional	99.78
PRK15075	434	citrate-proton symporter; Provisional	99.68
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.67
PRK12307	426	putative sialic acid transporter; Provisional	99.66
PRK11663	434	regulatory protein UhpC; Provisional	99.65
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.64
PRK10489	417	enterobactin exporter EntS; Provisional	99.62
PRK03893	496	putative sialic acid transporter; Provisional	99.61
TIGR00891	405	2A0112 putative sialic acid transporter.	99.6
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.6
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.59
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.58
PRK11010	491	ampG muropeptide transporter; Validated	99.56
TIGR00893	399	2A0114 d-galactonate transporter.	99.56
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.56
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.55
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.54
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.53
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.48
PRK09705	393	cynX putative cyanate transporter; Provisional	99.46
PLN00028	476	nitrate transmembrane transporter; Provisional	99.46
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.45
PRK03545	390	putative arabinose transporter; Provisional	99.45
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.44
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
TIGR00895	398	2A0115 benzoate transport.	99.44
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.43
TIGR00895	398	2A0115 benzoate transport.	99.43
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.41
TIGR00893	399	2A0114 d-galactonate transporter.	99.39
PRK11902	402	ampG muropeptide transporter; Reviewed	99.39
PRK15011	393	sugar efflux transporter B; Provisional	99.39
KOG2533	495	consensus Permease of the major facilitator superf	99.38
PRK09528	420	lacY galactoside permease; Reviewed	99.37
PRK03545	390	putative arabinose transporter; Provisional	99.37
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.37
PRK11663	434	regulatory protein UhpC; Provisional	99.37
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.36
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.36
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.36
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.35
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.34
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.33
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.33
TIGR00891	405	2A0112 putative sialic acid transporter.	99.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.32
PLN00028	476	nitrate transmembrane transporter; Provisional	99.32
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.31
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.31
PRK05122	399	major facilitator superfamily transporter; Provisi	99.31
PRK10054	395	putative transporter; Provisional	99.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.3
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.3
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.29
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.28
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
TIGR00901	356	2A0125 AmpG-related permease.	99.25
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.25
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.25
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.25
PRK12307	426	putative sialic acid transporter; Provisional	99.25
PRK09874	408	drug efflux system protein MdtG; Provisional	99.25
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.24
PRK10504	471	putative transporter; Provisional	99.24
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.24
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.24
PRK03699	394	putative transporter; Provisional	99.23
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.23
PRK09874	408	drug efflux system protein MdtG; Provisional	99.23
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.22
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.22
PRK12382	392	putative transporter; Provisional	99.21
PRK11043	401	putative transporter; Provisional	99.21
PRK10504	471	putative transporter; Provisional	99.21
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.2
TIGR00900	365	2A0121 H+ Antiporter protein.	99.2
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
KOG2532	466	consensus Permease of the major facilitator superf	99.19
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.19
PRK10091	382	MFS transport protein AraJ; Provisional	99.19
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.18
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.18
PRK03893	496	putative sialic acid transporter; Provisional	99.18
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.18
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.16
TIGR00900	365	2A0121 H+ Antiporter protein.	99.16
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.16
PRK10642	490	proline/glycine betaine transporter; Provisional	99.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.15
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.15
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.14
PRK03699	394	putative transporter; Provisional	99.14
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.13
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.12
PRK11043	401	putative transporter; Provisional	99.12
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.12
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.1
PRK10489	417	enterobactin exporter EntS; Provisional	99.1
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.09
PRK15075	434	citrate-proton symporter; Provisional	99.09
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.08
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.08
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.08
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.07
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.06
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.05
TIGR00898	505	2A0119 cation transport protein.	99.05
PRK05122	399	major facilitator superfamily transporter; Provisi	99.05
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.03
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.03
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.02
KOG0569	485	consensus Permease of the major facilitator superf	99.02
PTZ00207	591	hypothetical protein; Provisional	99.01
PRK03633	381	putative MFS family transporter protein; Provision	99.01
PRK09705	393	cynX putative cyanate transporter; Provisional	99.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.0
PRK12382	392	putative transporter; Provisional	98.99
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.98
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.98
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.96
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.95
PRK09952	438	shikimate transporter; Provisional	98.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.93
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.93
PRK10133	438	L-fucose transporter; Provisional	98.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.91
PRK10429	473	melibiose:sodium symporter; Provisional	98.91
TIGR00901	356	2A0125 AmpG-related permease.	98.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.9
PRK11902	402	ampG muropeptide transporter; Reviewed	98.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.89
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.89
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.88
PRK09848	448	glucuronide transporter; Provisional	98.88
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.86
PRK11010	491	ampG muropeptide transporter; Validated	98.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.84
PRK15011	393	sugar efflux transporter B; Provisional	98.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.82
PRK03633	381	putative MFS family transporter protein; Provision	98.82
PRK09669	444	putative symporter YagG; Provisional	98.81
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.8
KOG2532	466	consensus Permease of the major facilitator superf	98.78
PRK09528	420	lacY galactoside permease; Reviewed	98.78
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.78
PRK10054	395	putative transporter; Provisional	98.75
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.73
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.72
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.72
TIGR00805	633	oat sodium-independent organic anion transporter.	98.72
PRK10133	438	L-fucose transporter; Provisional	98.72
KOG0254	513	consensus Predicted transporter (major facilitator	98.71
KOG2615	451	consensus Permease of the major facilitator superf	98.7
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.7
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.7
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.7
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.7
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.67
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.65
COG2211	467	MelB Na+/melibiose symporter and related transport	98.65
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.64
PRK11462	460	putative transporter; Provisional	98.6
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.53
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.52
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.51
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.49
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.48
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.46
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.43
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.4
KOG2533	495	consensus Permease of the major facilitator superf	98.34
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.28
PF13347	428	MFS_2: MFS/sugar transport protein	98.27
PRK09669	444	putative symporter YagG; Provisional	98.24
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.2
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.18
PRK11462	460	putative transporter; Provisional	98.14
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.09
PRK10429	473	melibiose:sodium symporter; Provisional	98.09
TIGR00805	633	oat sodium-independent organic anion transporter.	98.02
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.99
PTZ00207	591	hypothetical protein; Provisional	97.98
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.95
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.88
PRK09848	448	glucuronide transporter; Provisional	97.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.81
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.81
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.68
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.66
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.62
KOG2563	480	consensus Permease of the major facilitator superf	97.52
COG2211	467	MelB Na+/melibiose symporter and related transport	97.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.5
PF12832	77	MFS_1_like: MFS_1 like family	97.44
KOG2563	480	consensus Permease of the major facilitator superf	97.38
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.29
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.25
KOG3626	735	consensus Organic anion transporter [Secondary met	97.19
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.07
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.03
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.03
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.83
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.03
COG0477	338	ProP Permeases of the major facilitator superfamil	96.0
KOG2615	451	consensus Permease of the major facilitator superf	95.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	95.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.74
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.43
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.34
KOG3762	618	consensus Predicted transporter [General function	95.2
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.18
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.15
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.9
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.41
KOG0637	498	consensus Sucrose transporter and related proteins	93.88
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.77
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.65
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.23
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.46
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	92.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	92.02
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	91.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.89
KOG3762	618	consensus Predicted transporter [General function	91.12
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.03
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	90.91
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.49
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	90.44
PRK03612	521	spermidine synthase; Provisional	90.06
KOG3626	735	consensus Organic anion transporter [Secondary met	89.29
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.1
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	87.28
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.69
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	86.35
KOG3098	461	consensus Uncharacterized conserved protein [Funct	85.23
KOG3810	433	consensus Micronutrient transporters (folate trans	81.8
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	81.08
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	80.32
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	80.24

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.6e-42  Score=303.73  Aligned_cols=291  Identities=31%  Similarity=0.584  Sum_probs=251.0

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHh-cCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHh-ccccchh
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRK-KKTVRYL   85 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   85 (320)
                      ++.|++++.+..+|+++.++..+++|||||||.. |||++||++.++++|..++.+++.+++.++.+++... +++.+..
T Consensus       180 ~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~  259 (485)
T KOG0569|consen  180 EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLR  259 (485)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHH
Confidence            4579999999999999999999999999999998 8999999999999999987777776666555444333 2566789


Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           86 DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        86 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      +++++++.|+.+.+++.+...++++|++.+.+|...++++.|++... +.+.+...+....+.++++.+++||+|||+++
T Consensus       260 ~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~-a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl  338 (485)
T KOG0569|consen  260 QLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE-AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL  338 (485)
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999997655 45566677777999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          166 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      +.+..++.++.+.+...........  .+..+..+.+..++..+++.|++|++|.+.+|+||++.|+.+.+.+..++|+.
T Consensus       339 l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~  416 (485)
T KOG0569|consen  339 LISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLS  416 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence            9988887777766655433322111  23445567778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcc
Q 020863          246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKER  302 (320)
Q Consensus       246 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~~~  302 (320)
                      +++....++++.+..|. ..|+++.+.+.+..++.++++||||||+.+||.+.++++
T Consensus       417 ~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  417 NFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999999999986 778888888888999999999999999999999999887

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=3.8e-32  Score=250.87  Aligned_cols=293  Identities=38%  Similarity=0.652  Sum_probs=234.7

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcC--hhhhHHHHHHHHHHHHHHHHh-ccccchhh
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD--IARLEDEIDHLSAAAEEELRK-KKTVRYLD   86 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   86 (320)
                      +||+++.+..+|+++..+...++||||||+.++|+.+++++.+++++.  ..+.+.+.++++.....+... +.+..+.+
T Consensus       207 ~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (513)
T KOG0254|consen  207 GWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGE  286 (513)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHH
Confidence            799999999999999988888999999999999999999999999988  445566665555222222111 11223455


Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      +++ +..++....++.++.++|++|++...+|.+++++..|.....  ...++..++.++++++++.++.||+|||++++
T Consensus       287 l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll  363 (513)
T KOG0254|consen  287 LFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLL  363 (513)
T ss_pred             hcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            555 667787888889999999999999999999999999987654  44566667778899999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHhcCCCC-CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          167 SSLAGVIISLVLLSWAFISGSSAS-SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      .+...+.++.+.+........... ......+..+.+..++...++.+.++++|.+.+|+||.+.|+++.+++...++..
T Consensus       364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            998888888877766554432211 2234456777788888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHHHhccccc
Q 020863          246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVV-FVILFVPETQGLTFLEVEQMWKERAWG  305 (320)
Q Consensus       246 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~pet~g~~~~~~~~~~~~~~~~  305 (320)
                      +++....++......+.+..|..+++++.+..+ ++++++|||||+++||+++.+.++.+.
T Consensus       444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~~  504 (513)
T KOG0254|consen  444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIKP  504 (513)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCch
Confidence            999888888777665434567777766666666 788899999999999999999877654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.97  E-value=3.7e-30  Score=237.42  Aligned_cols=276  Identities=23%  Similarity=0.338  Sum_probs=173.2

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHH-HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||++|.++++|+++.+++++++||||||+..|+|++ ++.+.+++.++.+..+ +.++..+.+ ++. +....+++++
T Consensus       201 ~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~l  277 (502)
T TIGR00887       201 YMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEA-EPDEVEKAS-TAV-EVPKASWSDF  277 (502)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccccc-Ccccccchh-ccc-cchhhhHHHH
Confidence            36999999999999999888999999999999888864 5777676665432111 111100000 000 0011246666


Q ss_pred             ccch---hhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHH-----------HHHHHHHHHHHHHHHHHHH
Q 020863           88 FKSK---EIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLA-----------LLLSLAVAGTNAVGTIVGI  153 (320)
Q Consensus        88 ~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~l~~g  153 (320)
                      ++++   +.++..+....... .+...++....+.|+++++.|.+.....           ........+..+++.++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  356 (502)
T TIGR00887       278 FTHFFKWRHGKHLLGTAGSWF-LLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV  356 (502)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH-HHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6532   22232222221222 2222334455678998888887643110           1112233334566888999


Q ss_pred             HHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhh
Q 020863          154 YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGI  233 (320)
Q Consensus       154 ~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~  233 (320)
                      +++||+|||++++.+.....++...+.........      ...  +....++..++..+.++..+.+.+|++|++.|++
T Consensus       357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~  428 (502)
T TIGR00887       357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST------HGF--LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRST  428 (502)
T ss_pred             HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch------hHH--HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHH
Confidence            99999999998876665555554444332211000      011  1112222233456677888899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----------hcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 020863          234 CGGMSATVNWISNLIVAQTFLTVAEL----------VGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQ  297 (320)
Q Consensus       234 ~~gi~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~  297 (320)
                      +.|+++..+++++++++.+++.+.+.          .+...+|.+++++++++.++ ++++|||||+++||+++
T Consensus       429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence            99999999999999999999887763          23345677777777766554 46789999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.97  E-value=5.1e-36  Score=273.17  Aligned_cols=283  Identities=36%  Similarity=0.663  Sum_probs=206.6

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      +.||+.+.++++++++.++.+.++||||||+..|+|.|||++.++++++.+..+++.+++.++.++..  +++.++.+++
T Consensus       168 ~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~  245 (451)
T PF00083_consen  168 WGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ--ESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc--ccceeeeecc
Confidence            46999999999999998888899999999999999999999999997665444444333332221111  1124567788


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      ++++.++.++..+.+..+.++.+++...+|.+.+.+..+.+..   ...+....+...++.+++.+++||+|||+++..+
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~  322 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG  322 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence            8766555666666666667777888888899999988887654   2334445555778888889999999999988777


Q ss_pred             hHHHHHHHHHHH-HHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLS-WAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       169 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      ...+.++...+. .........   .......+....++...+..+++++.+.+.+|+||++.|+++.|++...++++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~  399 (451)
T PF00083_consen  323 LLLMAICSLILGIIFFLGVSSS---SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGF  399 (451)
T ss_pred             cccccccccccccccccccccc---cccccccceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            666555554443 111111110   0011222233333445566678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 020863          248 IVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMW  299 (320)
Q Consensus       248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~  299 (320)
                      +++.+.+.+.+..+....+.++++++++..+++++++|||||++++|++++|
T Consensus       400 i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  400 IIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            9988888777766645677777888888888888999999999999999874

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=5.3e-28  Score=202.37  Aligned_cols=267  Identities=20%  Similarity=0.251  Sum_probs=173.2

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHH-----------HHHHHHHHHHHH-HH
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLED-----------EIDHLSAAAEEE-LR   77 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~   77 (320)
                      +|||.....++|..+...+..|+||||||.+.+|+++||.+.++++++.|+.+-           +.++.....++. .+
T Consensus       228 gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~  307 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS  307 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence            799999998899888888899999999999999999999999999988765321           111100000000 00


Q ss_pred             hcc--ccchhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhC-------------------CCCcHHHHH
Q 020863           78 KKK--TVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG-------------------FQSNQLALL  136 (320)
Q Consensus        78 ~~~--~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~~~  136 (320)
                      ..+  .....+++ .|++|+..+....++....+. |+......+.+.+.+.                   -.+....+.
T Consensus       308 a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYr  385 (528)
T KOG0253|consen  308 AAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYR  385 (528)
T ss_pred             cccccccchHhhc-ChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHH
Confidence            001  12344555 366666555433332222222 2221111122222211                   012233466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q 020863          137 LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP  216 (320)
Q Consensus       137 ~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (320)
                      ..++.....++|.++.++++||+|||+.+..+.+.+.++.+++...  ....       ....++   +..-.+..+...
T Consensus       386 dllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c--~~rn-------~~tvll---f~arafisg~fq  453 (528)
T KOG0253|consen  386 DLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC--KTRN-------AYTVLL---FTARAFISGAFQ  453 (528)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh--cCcc-------hhHHHH---HHHHHHHhchhe
Confidence            7777788899999999999999999998877666655555443322  1111       111111   122334456667


Q ss_pred             cchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 020863          217 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF  292 (320)
Q Consensus       217 ~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~  292 (320)
                      +.|+|.+|.|||.+|+++.|.+...+++++++.+.+.  +........+..++.++++++++.+.++.-|||||++
T Consensus       454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            8899999999999999999999999999999988766  3333334567778888888888888777789999975

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=1.4e-25  Score=206.04  Aligned_cols=279  Identities=32%  Similarity=0.578  Sum_probs=187.7

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||++|++.+++.++.++.+.++||||+|+..+++.+++.+..++.++.+..+...++..+...++  ..+   ....+
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~  265 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHG--RKT---GGKLL  265 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh--hhh---hhhhc
Confidence            4799999999999988877788899999999888998888888777665443322222221111100  000   01111


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      .  ........++....+.++.+++...++.|.+.+..|.+.... .....+..+..+++.+++++++||+|||+++..+
T Consensus       266 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~-~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~  342 (479)
T PRK10077        266 M--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG  342 (479)
T ss_pred             c--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence            1  111122222333455556667777788899988888765443 3444555666789999999999999999988877


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~  248 (320)
                      .....++.+.+..... ...   .   ......+..++...+..+..+..+.+.+|++|++.|+++.|+....+++++++
T Consensus       343 ~~~~~v~~~~l~~~~~-~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~  415 (479)
T PRK10077        343 ALGMAIGMFSLGTAFY-TQA---P---GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF  415 (479)
T ss_pred             HHHHHHHHHHHHHHHh-cCc---c---cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH
Confidence            7666655544432221 111   0   11222233333444444556777899999999999999999999999999999


Q ss_pred             HHHHHHHHH------HHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcc
Q 020863          249 VAQTFLTVA------ELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKER  302 (320)
Q Consensus       249 ~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~~~  302 (320)
                      ++.+++.+.      +..++...|.+++.+++++.++.+++.||||++++||+++.++..
T Consensus       416 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  475 (479)
T PRK10077        416 VSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE  475 (479)
T ss_pred             HHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence            988877554      245556677777777777777777789999999999999888653

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=6.3e-26  Score=213.89  Aligned_cols=268  Identities=21%  Similarity=0.307  Sum_probs=170.6

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhH-----HH--HHHHHHHHHHH-H---H
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLE-----DE--IDHLSAAAEEE-L---R   77 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~-~---~   77 (320)
                      .+||++|++.++++++.++.++++||||||+..+|+.+||.++++++++.|...     +.  .+++....+++ .   +
T Consensus       331 ~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (742)
T TIGR01299       331 HSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIE  410 (742)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhccc
Confidence            479999999999999988888999999999999999999999999998765321     10  01111100000 0   0


Q ss_pred             hcc-c-----------------cchhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHh-------------
Q 020863           78 KKK-T-----------------VRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA-------------  126 (320)
Q Consensus        78 ~~~-~-----------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------  126 (320)
                      .+. +                 ..+.++|+.+. ++..+....++.. ..++++.+..|.|.+++..             
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~-~~~tl~l~~~wf~-~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~  488 (742)
T TIGR01299       411 SDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEV-REITIKLMGVWFT-LSFGYYGLSVWFPDMIKHLQADDYAALTKNFP  488 (742)
T ss_pred             ccccchhhcchhhhhhhhhhHHHHHHHHcCccH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            000 0                 02455665544 4444443333333 3446777777888765431             


Q ss_pred             -----------------------------CCC---------------------C--------------------------
Q 020863          127 -----------------------------GFQ---------------------S--------------------------  130 (320)
Q Consensus       127 -----------------------------g~~---------------------~--------------------------  130 (320)
                                                   |+.                     +                          
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~  568 (742)
T TIGR01299       489 GDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFID  568 (742)
T ss_pred             ccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhh
Confidence                                         000                     0                          


Q ss_pred             -------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHh
Q 020863          131 -------------------------NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS  185 (320)
Q Consensus       131 -------------------------~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~  185 (320)
                                               ....+....+..+..+++.+++|+++||+|||+++..+.++.+++.+.+...  .
T Consensus       569 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~  646 (742)
T TIGR01299       569 SEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--N  646 (742)
T ss_pred             hhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--c
Confidence                                     0011233445556678999999999999999999887766666555443321  1


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 020863          186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGAT  265 (320)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~  265 (320)
                        +     .. . .++...+ ..++..+..+..+++.+|++|++.|+++.|+.+..+++++++++.+...+... +...+
T Consensus       647 --s-----~~-~-ll~~~~l-~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~p  715 (742)
T TIGR01299       647 --S-----ES-A-MIALLCL-FGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAP  715 (742)
T ss_pred             --c-----HH-H-HHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHH
Confidence              0     00 1 1111112 22223334556778999999999999999999999999999999887766553 33456


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCH
Q 020863          266 FLILAGIAVLAVVFVILFVPETQGLTF  292 (320)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~pet~g~~~  292 (320)
                      |++++++.++++++. .++|||+|+.+
T Consensus       716 f~i~a~~lll~~ll~-~~LPET~~~~l  741 (742)
T TIGR01299       716 ILFASAALACGGLLA-LKLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHHHHH-HhCCCCccccc
Confidence            666666666665544 56799998864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.5e-25  Score=191.67  Aligned_cols=274  Identities=22%  Similarity=0.363  Sum_probs=176.5

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHh-cCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhcc-cc---c
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFM-KSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKK-TV---R   83 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~   83 (320)
                      .-||..|.++++|++..++.|+.||||+||-.. .++.++|.+-.++....     +   +.++.+.+...+. +.   .
T Consensus       222 ~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~-----~---~~~~~~~~~~~~~~~~~~~~  293 (538)
T KOG0252|consen  222 GVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV-----D---IEAESTAESDVPPPSNSFGL  293 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc-----c---cchhhccccCCCCcccccch
Confidence            359999999999999999999999999999643 23344443221111111     0   1111111100000 11   1


Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL--------LLSLAVAGTNAVGTIVGIYL  155 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~l~~g~l  155 (320)
                      +.+.|..++- +.++ +.....+..=...+..+.+...+++..|..+.....        ...++.....++|..+..++
T Consensus       294 F~~~f~~~hg-~~Ll-gt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~  371 (538)
T KOG0252|consen  294 FSRLFLRWHG-KHLL-GTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYF  371 (538)
T ss_pred             HHHHHHHHHH-HHHH-HHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEE
Confidence            2233332311 2222 222222222223455556677788877766543322        22233333334566777889


Q ss_pred             HhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhH
Q 020863          156 IDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICG  235 (320)
Q Consensus       156 ~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~  235 (320)
                      +|++|||.+.+.++.++.+....+...+.+  ....   ..  .+++..+...+...|++....++++|.||+++|+++.
T Consensus       372 id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--~~~~---~G--f~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~h  444 (538)
T KOG0252|consen  372 IDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--LENT---IG--FVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCH  444 (538)
T ss_pred             eehhhhHHHHHhhHHHHHHHHHHHcCCccc--cccc---Cc--eeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhh
Confidence            999999999988877665555444433321  1111   11  2334445566778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHh
Q 020863          236 GMSATVNWISNLIVAQTFLTVAE-----LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWK  300 (320)
Q Consensus       236 gi~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~  300 (320)
                      |++.+.|.+|++++...+.++.+     ..+...++++++++++++.++ .+++|||||+++||++.+.+
T Consensus       445 GIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~~~leei~~e~~  513 (538)
T KOG0252|consen  445 GISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF-TLLIPETKGKSLEEISNEEE  513 (538)
T ss_pred             hHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe-eEEeecccccCHHHhcChhh
Confidence            99999999999999999999888     677888999999999988765 46788999999999966554

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=2.3e-23  Score=192.68  Aligned_cols=262  Identities=24%  Similarity=0.359  Sum_probs=163.0

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhH--HHHHHHHHHHHHHHHhccccchhhh
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLE--DEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      +||+.|++.+++.++..+..+++||||+|+..+++.+|+.+.+++..+.+..+  ++..+...+. ++.+.+++.+.+++
T Consensus       241 ~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  319 (505)
T TIGR00898       241 DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK-DLSSSKKQYSFLDL  319 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh-hhhhccCCCcHHHH
Confidence            49999999999999888788899999999999999999999888776544321  1111111011 11111122467788


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      +++++.+...+.....+..... .++.    .+......+.+.    ........+..+++.+++++++||+|||+.+..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~  390 (505)
T TIGR00898       320 FRTPNLRKTTLCLMMLWFTTAF-SYYG----LVLDLGNLGGNI----YLDLFISGLVELPAKLITLLLIDRLGRRYTMAA  390 (505)
T ss_pred             hCChHHHHHHHHHHHHHHHHHH-HHHH----HhccccccCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            9888887765554332222111 1111    122223333331    233344455677889999999999999998877


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      +....+++.+.+...  .  ..   .  .+...... +...++..+..+..+.+.+|++|++.|+++.|+.+..++++++
T Consensus       391 ~~~~~~~~~l~~~~~--~--~~---~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~  460 (505)
T TIGR00898       391 SLLLAGVALLLLLFV--P--VD---L--YFLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSI  460 (505)
T ss_pred             HHHHHHHHHHHHHHc--C--CC---c--hHHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHH
Confidence            665555544433221  1  10   0  01111111 1111222223455678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 020863          248 IVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE  294 (320)
Q Consensus       248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~  294 (320)
                      +++.+.. +.+ .+...++.+++++.+++++. .+++|||++++++|
T Consensus       461 i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~  504 (505)
T TIGR00898       461 ISPFLVY-LGE-KWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLPE  504 (505)
T ss_pred             HHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence            9888776 333 34455677777666666554 46789999998765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=2.8e-21  Score=176.88  Aligned_cols=284  Identities=39%  Similarity=0.651  Sum_probs=181.1

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHH----HHHHHHHHHHHHhccccc
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEI----DHLSAAAEEELRKKKTVR   83 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   83 (320)
                      ..+||+.|++.++..++.++...++||+|+++..+++.+++.+..++..+.+..+.+.    +......+.+.+..+ ..
T Consensus       192 ~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  270 (481)
T TIGR00879       192 TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQ-PS  270 (481)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhcc-cc
Confidence            3579999999888888777778889999999888877777666655543322111111    110111111111111 11


Q ss_pred             hhhhccchh-hHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020863           84 YLDVFKSKE-IRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK  162 (320)
Q Consensus        84 ~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR  162 (320)
                      +.+.++..+ .+...+....+..+.+..+.+...++.|.+.++.|.+... ......+..+..+++.+++++++||+|||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  349 (481)
T TIGR00879       271 WGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH-AFLVSIIVGAVNFAFTFVAIFLVDRFGRR  349 (481)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            223332211 1222222333334444455666677889898888887643 44455555666789999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      +.+..+.....++...+.......... .+.......+....++...+..+..+..+.+.+|.+|++.|+++.|+.+...
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  428 (481)
T TIGR00879       350 PLLLIGAAGMAICLFVLGILGASFVTG-SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN  428 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCC-cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHH
Confidence            987766555444444433211111110 0000012223333344455566667777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 020863          243 WISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE  294 (320)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~  294 (320)
                      ++++++++.+.+.+.+..++...|.+++++++++.++.+++.||+|+++++|
T Consensus       429 ~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       429 WLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            9999999998888888778878888888888888777778889999887764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=8.8e-20  Score=169.36  Aligned_cols=272  Identities=20%  Similarity=0.261  Sum_probs=169.5

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhh----hHHHHHHHHHHHH-HHHHhccccch
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIAR----LEDEIDHLSAAAE-EELRKKKTVRY   84 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~   84 (320)
                      +||+.+++..+++++.+++++..||||||+..+|+.+++.+.+++..+.|+    .....+......+ +....+++..+
T Consensus       232 ~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (521)
T KOG0255|consen  232 DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISF  311 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCch
Confidence            799999999999999888877788999999999999999999999876541    1111111111111 11111223457


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL  164 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~  164 (320)
                      .++++.++.++..+.......... .+++    -.+......|.+.    ............++....+...|++|||..
T Consensus       312 ~~l~~~~~l~~~~~~~~~~~~~~~-~~y~----gl~~~~~~lg~~~----~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~  382 (521)
T KOG0255|consen  312 LDLFRTPRLRYRTLYLLFIWFVFS-LVYY----GLSLNVSGLGGNI----YLNFTLSGLVELPAYFRNGLLLPEFGRRPP  382 (521)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHh-HHHH----hhhhhhhhcCchH----HHHHHHHHHHHhhHHHHHHHHHHHhCcHHH
Confidence            888998877776665443321111 1111    1222233334331    222333333567777888999999999998


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH
Q 020863          165 ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI  244 (320)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~  244 (320)
                      ...+.....++.+...+......     .   ++..+...+...+...+. ...+.+.+|++||.+|+.+.|.++..+++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~-~~~~~~~~el~pt~~r~~~~~~~~~~~~~  453 (521)
T KOG0255|consen  383 LFLSLFLAGIGLLLFGWLPDDLG-----G---WLHWILPLLGKFFIGSAF-NLIFLYSAELIPTVVRNTAVGAISAAARL  453 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhccch-----h---HHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            88777766666655544321110     0   111111111111122222 23478999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHh
Q 020863          245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWK  300 (320)
Q Consensus       245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~  300 (320)
                      ++++++.+...... ......+..++....+.++++..++|||+++.+.|..++.+
T Consensus       454 ~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  454 GSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE  508 (521)
T ss_pred             HHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence            99988887655444 22223333356666666666778999999999877555554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.86  E-value=5.9e-20  Score=169.13  Aligned_cols=248  Identities=15%  Similarity=0.132  Sum_probs=136.0

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      ..+||++|+++++++++.++++.++||||+|...+++.+++.+                       +...+++..+++++
T Consensus       188 ~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  244 (490)
T PRK10642        188 DWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------EGLQDGPKVSFKEI  244 (490)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------ccccccccCCHHHH
Confidence            3579999999998888878788899999998643322111000                       00000112234455


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      ++++  ++..........+. ...++....|.|.+++ ..|.+... .........+...++.+++|+++||+|||+.+.
T Consensus       245 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  320 (490)
T PRK10642        245 ATKH--WRSLLTCIGLVIAT-NVTYYMLLTYMPSYLSHNLHYSEDH-GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI  320 (490)
T ss_pred             HHHh--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            5431  22222222111111 2233444556777775 45765443 333334444556788889999999999999776


Q ss_pred             HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHH
Q 020863          167 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN  246 (320)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~  246 (320)
                      .+.....+....+... ....     . . .....+..+.......+ .+....+.+|++|++.|+++.|+.+..++.++
T Consensus       321 ~~~~~~~~~~~~~~~~-~~~~-----~-~-~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        321 LGSVALFVLAIPAFIL-INSN-----V-I-GLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             HHHHHHHHHHHHHHHH-HhCC-----C-H-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence            5543322222221111 1111     0 0 11111111111111112 22334677899999999999998877788887


Q ss_pred             HHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 020863          247 LIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVPETQGLTF  292 (320)
Q Consensus       247 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~  292 (320)
                      .+++.+...+.+..+ +..+++......+++.+ ..+++|||+++.+
T Consensus       392 ~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~  437 (490)
T PRK10642        392 GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence            788877776666544 34444444444444444 3456799987654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.79  E-value=1.8e-17  Score=150.43  Aligned_cols=233  Identities=19%  Similarity=0.177  Sum_probs=123.0

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      ..+||++|+++++++++.++++..+||||++..      +.                         .  +  +..+++++
T Consensus       194 ~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~~-------------------------~--~--~~~~~~~l  238 (432)
T PRK10406        194 EWGWRIPFALGAVLAVVALWLRRQLDETSQQET------RA-------------------------L--K--EAGSLKGL  238 (432)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------hh-------------------------h--c--ccccHHHH
Confidence            458999999999999988888888999987521      00                         0  0  01134556


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      +++++.+...+..   ....+ ..++....|.|.+++ ..|.+..+......+. .....++.++.|+++||+|||+...
T Consensus       239 ~~~~~~~~~~~~~---~~~~~-~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~-~~~~~i~~~~~G~l~Dr~grr~~~~  313 (432)
T PRK10406        239 WRNRRAFIMVLGF---TAAGS-LCFYTFTTYMQKYLVNTAGMHANVASGIMTAA-LFVFMLIQPLIGALSDKIGRRTSML  313 (432)
T ss_pred             HhhHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCchHHHH
Confidence            6655443322211   11111 122333445676664 4677654443433333 3335677788899999999998765


Q ss_pred             HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH-
Q 020863          167 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS-  245 (320)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~-  245 (320)
                      .......+...++.... ....    .......+.....+...+   ..+..+.+.+|+||++.|+++.|+++..++.. 
T Consensus       314 ~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        314 CFGSLAALFTVPILSAL-QNVS----SPYAAFGLVMCALLIVSF---YTSISGILKAEMFPAQVRALGVGLSYAVANALF  385 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HcCC----cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHH
Confidence            54333222222111111 1110    111111111111111111   12345678899999999999999999887753 


Q ss_pred             HHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 020863          246 NLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVPETQGLT  291 (320)
Q Consensus       246 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~g~~  291 (320)
                      +...+.+.. +.+..| +...+++.+++.+++.+..+ + .+++||+
T Consensus       386 g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~-~-l~~~~~~  429 (432)
T PRK10406        386 GGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL-M-LHRKGKG  429 (432)
T ss_pred             HhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH-H-hhhcccc
Confidence            333444333 334445 33344444455555544333 3 4556665

>PRK09952 shikimate transporter; Provisional

Probab=99.78  E-value=3.2e-17  Score=148.90  Aligned_cols=237  Identities=17%  Similarity=0.182  Sum_probs=128.5

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccch-hh
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY-LD   86 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   86 (320)
                      ..+||++|++++++.++.++++..+||||+|...+++.+++                              +++.+. ..
T Consensus       195 ~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~------------------------------~~~~~~~~~  244 (438)
T PRK09952        195 SWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA------------------------------KKRIPVIEA  244 (438)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc------------------------------cccCCHHHH
Confidence            35899999999999888777788899999885332111100                              000011 12


Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      ++++++.+.......   ... ..+.+....+.|.++ +..|.+.... ...........+++.++.|+++||+|||+..
T Consensus       245 l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~y~~~~~g~s~~~~-~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~  319 (438)
T PRK09952        245 LLRHPGAFLKIIALR---LCE-LLTMYIVTAFALNYSTQNLGLPRELF-LNIGLLVGGLSCLTIPCFAWLADRFGRRRVY  319 (438)
T ss_pred             HHHchHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            334444333222111   111 112222333455554 4556654332 2223333445677888999999999999987


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHH-H
Q 020863          166 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW-I  244 (320)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~-~  244 (320)
                      ..+.....++...+.... ...    +.  .+..+....+.... .....+..+++.+|.+|++.|+++.|+.+..++ +
T Consensus       320 ~~~~~~~~~~~~~~~~~~-~~~----~~--~~~~~~~~~l~~~~-~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~l  391 (438)
T PRK09952        320 ITGALIGTLSAFPFFMAL-EAQ----SI--FWIVFFSIMLANIA-HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVV  391 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH-HcC----Ch--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHH
Confidence            655443333322222111 111    01  11111111111111 111234456888999999999999999877765 6


Q ss_pred             HHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          245 SNLIVAQTFLTVAELVG--TGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       245 ~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      ++.+++.+...+.+..+  +..++...+.+.+++.+.. +.++||.
T Consensus       392 gg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~  436 (438)
T PRK09952        392 GGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence            77788888777766442  4455555555555555543 4566653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.68  E-value=6.6e-15  Score=133.68  Aligned_cols=174  Identities=14%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             CcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 020863          111 GINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA  189 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
                      +++....|.|.++++ .|.+..+. .....+..+..+++.+++|+++||+|||+....+.....+...+.. ..... ..
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~-~~  329 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADS-LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL-SWLVA-AP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHc-CC
Confidence            344556677887775 67765443 3444455566788999999999999999987654332222111111 11111 11


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhcchh--H-
Q 020863          190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI-SNLIVAQTFLTVAELVGTGA--T-  265 (320)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~-~~~~~~~~~~~~~~~~g~~~--~-  265 (320)
                         . ....... ..+....++ ...+..+.+.+|.+|++.|+++.|+....++. ++.+++.....+.+..|+..  . 
T Consensus       330 ---~-~~~~~~~-~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~  403 (434)
T PRK15075        330 ---S-FARMLAV-ELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGY  403 (434)
T ss_pred             ---c-hHHHHHH-HHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHH
Confidence               1 1111111 111111111 12333456789999999999999987666665 46677777777777776432  2 


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 020863          266 FLILAGIAVLAVVFVILFVPETQGLTFLEVE  296 (320)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~  296 (320)
                      +.+++.+   ..++..+...+-++.+++..|
T Consensus       404 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  431 (434)
T PRK15075        404 WLSFAAV---CGLIATLVLYRRRGARLQAAE  431 (434)
T ss_pred             HHHHHHH---HHHHHHHHhccccchhhhhhh
Confidence            2222222   222334566677777777554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.67  E-value=4.4e-15  Score=131.54  Aligned_cols=216  Identities=11%  Similarity=0.076  Sum_probs=122.3

Q ss_pred             CchHHHHhhhhHHHHHH-HHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~-~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|.+.++++++. ++.+.++||+|++.   ++..+.             +           +..     .+++++
T Consensus       141 ~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~~-------------~-----------~~~-----~~~~~l  188 (368)
T TIGR00903       141 GGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFGF-------------K-----------DAV-----KEFGAL  188 (368)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcch-------------H-----------HHH-----HHHHHH
Confidence            47999999977777654 44566899999863   110000             0           000     023467


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH---H
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK---L  164 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~---~  164 (320)
                      ++++..+...+....     ....++.+..|.|+++++.+++. .......++    ...+.+..++++||.+||+   .
T Consensus       189 l~~~~~~~~~~~~~~-----~~~~~~~~~~wlp~~L~~~g~s~-~~~~~~~l~----~~~g~~g~~~~~d~~~r~~~r~~  258 (368)
T TIGR00903       189 AGRKDLWIIGAILGF-----GVALFDNLAIWLEAALRPAGLED-IAGDAVALA----ILAGLIGVAVIPDRVARAGLRSI  258 (368)
T ss_pred             HcChhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHH----HHHHHHHHHHhhHHhhhhhhHHH
Confidence            777776655443221     12233344567888888877653 222222222    3344455688999887643   2


Q ss_pred             HHH-HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHH
Q 020863          165 ALS-SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW  243 (320)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~  243 (320)
                      ... ......+.  .....  ...+    .   ...+....+ ..++..+..+..+.+.+|.+|++.|+++.|+.+..++
T Consensus       259 ~~~~~~~~~a~~--~~~~~--~~~~----~---~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~  326 (368)
T TIGR00903       259 YIRAAALLIAAF--FLALA--FELN----R---LALFAFIGI-AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSR  326 (368)
T ss_pred             HHHHHHHHHHHH--HHHHH--Hccc----c---HHHHHHHHH-HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHH
Confidence            221 11111111  11111  1111    1   111212211 2222333344567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 020863          244 ISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       244 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  280 (320)
                      ++++.++...+.+..  +....|.+++...+++.+.+
T Consensus       327 ~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       327 AISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            999888887766553  55567777777777766654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.66  E-value=6.6e-15  Score=133.33  Aligned_cols=219  Identities=20%  Similarity=0.224  Sum_probs=123.6

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||+.|++.+++.++.++++...||++++...+.+.++         +.+              +........+.++++
T Consensus       169 ~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---------~~~--------------~~~~~~~~~~~~~~~  225 (426)
T PRK12307        169 YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKG---------KHS--------------QSAWSVFSLSMKGLF  225 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccc---------ccc--------------ccchhhhhHHHHHHH
Confidence            479999999877777666666678998876422110000         000              000000011345566


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      +++..+.........  +..+.....+..+.|.+++..|.+....... .....+++.++.++.++++||+|||+....+
T Consensus       226 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~  302 (426)
T PRK12307        226 NRAQFPLTLCVFIVL--FSIFGANWPIFGLLPTYLAGEGFDTGVVSNL-MTAAAFGTVLGNIVWGLCADRIGLKKTFSIG  302 (426)
T ss_pred             hhchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            666655433322111  1111122223345677777777765444333 3344555788999999999999999987665


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHH-HHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYI-AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      .....+....+.  .. ...    . .  . ......+. .+...+..+....+..|.+|++.|+++.|+....+++++.
T Consensus       303 ~~~~~~~~~~~~--~~-~~~----~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        303 LLMSFLFIFPLF--RI-PQD----N-Y--L-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT  371 (426)
T ss_pred             HHHHHHHHHHHH--HH-ccc----c-H--H-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH
Confidence            544333322221  11 110    1 1  1 11111111 1122233344556778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchh
Q 020863          248 IVAQTFLTVAELVGTGA  264 (320)
Q Consensus       248 ~~~~~~~~~~~~~g~~~  264 (320)
                      +++.+...+.+..|...
T Consensus       372 ~gp~~~g~l~~~~g~~~  388 (426)
T PRK12307        372 FNSMAATWLGITMGLGA  388 (426)
T ss_pred             HHHHHHHHHHHcccHHH
Confidence            99888888877776443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.65  E-value=4.6e-15  Score=134.67  Aligned_cols=165  Identities=15%  Similarity=0.169  Sum_probs=98.7

Q ss_pred             eeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHH-HHHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          115 VMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLA-LSSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       115 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~--grR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      +..+.|.++ +..|.+..+.... .....+.+.++.+++|+++||+  ++|+.. ........+....+ ..  .. .  
T Consensus       262 ~~~~~p~~l~~~~g~s~~~a~~~-~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~-~~--~~-~--  334 (434)
T PRK11663        262 INDWGNLYMSETLGVDLVTANSA-VSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL-WL--MP-F--  334 (434)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHH-HHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH-HH--cc-c--
Confidence            344667666 4567765554433 3344555789999999999998  333332 21111111111111 11  11 1  


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                      .+.  .. ..... +...++..++......+.+|.+|++.|+++.|+.+..+++++.+++.....+.+..|+...|...+
T Consensus       335 ~~~--~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~  410 (434)
T PRK11663        335 ASY--VM-QAACF-FTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVIS  410 (434)
T ss_pred             ccH--HH-HHHHH-HHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHH
Confidence            011  11 11111 111122222222334566899999999999999999999999999999999888888888888888


Q ss_pred             HHHHHHHHHHHhhcccCCCC
Q 020863          271 GIAVLAVVFVILFVPETQGL  290 (320)
Q Consensus       271 ~~~~~~~~~~~~~~pet~g~  290 (320)
                      ++.+++++..+...++.+++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        411 IAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHHHHHHHHHHhhhchh
Confidence            88777766555555555544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.64  E-value=2.4e-14  Score=130.76  Aligned_cols=249  Identities=15%  Similarity=0.217  Sum_probs=127.3

Q ss_pred             CchHHHHhhhhHHHHHH-HHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccc-hhh
Q 020863            9 GTWRWMLGVSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR-YLD   86 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~-~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (320)
                      .+||+.|++.+++.++. ++...++||+|+....+. ++|..+      +.+   ++.     +.+++.+.+.+.. ...
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~------~~~---~~~-----~~~~~~~~~~~~~~~~~  248 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN------DYP---DDY-----NEKHEQELTAKQIFMQY  248 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh------ccc---ccc-----ccccCCCccHHHHHHHH
Confidence            47999999988877765 444567899886521111 111000      000   000     0000000000000 112


Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKK  163 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~--grR~  163 (320)
                      +++++..|...+......     ...+....|.|.++++ .|++....+. .........+++.+++|+++||+  +||.
T Consensus       249 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~-~~~~~~~~~~~g~~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSW-AYFLYEYAGIPGTLLCGWMSDKVFRGNRG  322 (452)
T ss_pred             HHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            455666555433322111     1122334567777765 5666544333 33445555778999999999999  5554


Q ss_pred             HHHHHhHH-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          164 LALSSLAG-VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      ........ ..++...  ... ....    ..  .....+.... .....+.......+..|.+|++.|+++.|+.+..+
T Consensus       323 ~~~~~~~~l~~~~~~~--~~~-~~~~----~~--~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  392 (452)
T PRK11273        323 ATGVFFMTLVTIATIV--YWL-NPAG----NP--TVDMACMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  392 (452)
T ss_pred             hHHHHHHHHHHHHHHH--HHH-hccc----Ch--HHHHHHHHHH-HHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHH
Confidence            32211111 1111111  111 1110    10  1111111111 11111222223345679999999999999999888


Q ss_pred             HHHHHH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hhcccCC
Q 020863          243 WISNLI-VAQTFLTVAELVGTGATFLILAGIAVLAVVFVI-LFVPETQ  288 (320)
Q Consensus       243 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~pet~  288 (320)
                      ++++.+ ++.+...+.+..|+...|.+++++++++++... +..+|+|
T Consensus       393 ~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        393 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            887655 677778888888888888877777777666554 3344543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.62  E-value=5.3e-14  Score=127.12  Aligned_cols=239  Identities=19%  Similarity=0.182  Sum_probs=143.4

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhcc
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK   89 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (320)
                      +||+.|.+.++..++..+....+||+|+..  +.+ ++..                +        +..    ..++..++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~~~~----------------~--------~~~----~~~~~~~~  222 (417)
T PRK10489        174 GVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR-EHPL----------------R--------SLL----AGFRFLLA  222 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-ccch----------------H--------HHH----HHHHHHHc
Confidence            699999999888887777777888875321  000 0000                0        000    01223455


Q ss_pred             chhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           90 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      ++..+..++..... ..  .   .....+.|.+.++ .|.+....+... ....+..+++.++.+++.||.++|+.+..+
T Consensus       223 ~~~~~~~~~~~~~~-~~--~---~~~~~~~p~~~~~~~g~~~~~~g~~~-~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~  295 (417)
T PRK10489        223 SPVVGGIALLGGLL-TM--A---SAVRVLYPALADEVWQMGAAQIGLLY-AAVPLGAALGALTSGWLAHSARPGLLMLLS  295 (417)
T ss_pred             ChHHHHHHHHHHHH-HH--H---HhHHHhhHHHHHhccCCChhHhHHHH-HHHHHHHHHHHHHHHHhhhccCcchHHHHH
Confidence            55554443332211 11  1   1223345666666 677655444433 344555778889999999997766665544


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~  248 (320)
                      .....+..+.+.    ..+     ..  +...++..++... .....+..+.+..|..|++.|+++.|+.+....++..+
T Consensus       296 ~~~~~~~~~~~~----~~~-----~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  363 (417)
T PRK10489        296 TLGSFLAVGLFG----LMP-----MW--ILAVLCLALFGYL-SAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI  363 (417)
T ss_pred             HHHHHHHHHHHH----ccc-----hH--HHHHHHHHHHHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH
Confidence            433333322211    111     11  1111222222111 11112344567789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 020863          249 VAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQM  298 (320)
Q Consensus       249 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~  298 (320)
                      ++.+.+.+.+..|....+...+++.++..++.....|++|++++||+|+.
T Consensus       364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            99999998888887777777777766666667788899999999987754

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.61  E-value=1.5e-13  Score=127.03  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=97.9

Q ss_pred             eeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          116 MYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       116 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      ..+.|.+++ ..|.+..+.+.. .....+..+++.+++|+++||+|||+....+.....+..+.+  . ....     ..
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~-~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~-~~~~-----~~  365 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANV-LFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPV--F-AIGG-----AN  365 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--h-hccc-----cH
Confidence            345677774 777776554444 445555678999999999999999988665443332222111  1 1110     00


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA-  273 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-  273 (320)
                       .+ ..............+..+....+..|.+|++.|+++.|+.+..+.+++.+++.+...+.+..|+...+...++.. 
T Consensus       366 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        366 -VW-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             -HH-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence             11 111111111222334445556778899999999999999999999999999888888888777766665444333 


Q ss_pred             HHHHHHHHhhcccC
Q 020863          274 VLAVVFVILFVPET  287 (320)
Q Consensus       274 ~~~~~~~~~~~pet  287 (320)
                      +++.+...+..|+.
T Consensus       444 ~~~~~~~~~~~~~~  457 (496)
T PRK03893        444 FVVILLIGLDMPSR  457 (496)
T ss_pred             HHHHHHHHhcCcHH
Confidence            33333334445543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.60  E-value=1.5e-13  Score=123.28  Aligned_cols=231  Identities=18%  Similarity=0.224  Sum_probs=122.2

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||+.|++.+++.++.++.+..+||+|++...+.++++..+..++..+....   ..       +..+.. ....++..
T Consensus       165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~-~~~~~~~~  233 (405)
T TIGR00891       165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR---IA-------NIVMTL-AAAMVQSA  233 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh---hh-------hhhhhh-hHHhhhhh
Confidence            35999999998888887777788999998754332222111111111110000   00       000000 00011111


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                        ++.+...........+..+.. .....+.|.++ +..|.+..+.... .....+...++.++.++++||+|||+.+..
T Consensus       234 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~~~~-~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~  309 (405)
T TIGR00891       234 --GKRWPTFVYLVVLVLFANLYS-HPIQDLLPTYLKADLGLSPHTVANI-VVFSNIGAIVGGCVFGFLGDWLGRRKAYVC  309 (405)
T ss_pred             --hhhhHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCchhhhHH
Confidence              111111111111111111211 12223445444 4567765554443 344555678999999999999999998765


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      +...+.+....+   .....     ..  +...... .....+..+..+....+.+|.+|++.|+++.|+.+..+++++.
T Consensus       310 ~~~~~~~~~~~~---~~~~~-----~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  378 (405)
T TIGR00891       310 SLLAGQLLIIPV---FAIGA-----NV--AVLGLGL-FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA  378 (405)
T ss_pred             HHHHHHHHHHHH---HHhCC-----ch--HHHHHHH-HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH
Confidence            544332211111   11111     10  1111111 1122223344455567889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-chhH
Q 020863          248 IVAQTFLTVAELVG-TGAT  265 (320)
Q Consensus       248 ~~~~~~~~~~~~~g-~~~~  265 (320)
                      +++.+...+.+..| +...
T Consensus       379 ~g~~~~g~l~~~~g~~~~~  397 (405)
T TIGR00891       379 LAPIIGALLAQRLDEYGTA  397 (405)
T ss_pred             HHHHHHHHHHHhccccchh
Confidence            99999998888877 5433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.60  E-value=8.5e-14  Score=125.30  Aligned_cols=153  Identities=20%  Similarity=0.259  Sum_probs=94.4

Q ss_pred             eeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          116 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      ..+.|.++++.|.+....... .....+..+++.++.|+++||+|||+....+.....++...+  ..  ..     .. 
T Consensus       240 ~~~~p~~~~~~g~s~~~~~~~-~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~--~~-----~~-  308 (406)
T PRK11551        240 LNWLPSLLVGQGLSRSQAGLV-QIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL--AA--AP-----SF-  308 (406)
T ss_pred             HHHHHHHHHhCCCChhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--Hh--cC-----cH-
Confidence            345678888888766554443 334455678999999999999999988765433333322221  11  11     11 


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAV  274 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  274 (320)
                       +...+ ..++..+...+..+..+.+.+|.+|++.|+++.|+.+..+.+++.+++.+...+.+..+ +...+...+.+.+
T Consensus       309 -~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~  386 (406)
T PRK11551        309 -AGMLL-AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVIL  386 (406)
T ss_pred             -HHHHH-HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHH
Confidence             11111 11222222223345566788999999999999999999999999999988887776544 3334444444444


Q ss_pred             HHHHHHH
Q 020863          275 LAVVFVI  281 (320)
Q Consensus       275 ~~~~~~~  281 (320)
                      ++.+..+
T Consensus       387 ~~~~~~~  393 (406)
T PRK11551        387 VAALAAL  393 (406)
T ss_pred             HHHHHHH
Confidence            4444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.59  E-value=6.4e-14  Score=128.43  Aligned_cols=179  Identities=17%  Similarity=0.215  Sum_probs=103.3

Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      .++++..+...+...    +. ...+.....|.|.+++ ..|.+..+.... ........+++.+++|+++||+|||+..
T Consensus       254 ~l~~~~~~~~~~~~~----~~-~~~~~~~~~~~p~yl~~~~g~s~~~a~~~-~~~~~~~~~ig~~~~G~lsDr~g~r~~~  327 (467)
T PRK09556        254 VLKNPVIWLLCFANI----FL-YIVRIGIDNWSPVYAFQELGFSKEDAINT-FTLFEIGALVGSLLWGWLSDLANGRRAL  327 (467)
T ss_pred             HHcChHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHccCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            566666655433321    11 1122334466777665 567766554443 3444455789999999999999999865


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH-
Q 020863          166 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI-  244 (320)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~-  244 (320)
                      ........++...+  .+....     ..  ....+....+ .++..+.....+.+..|.+|++.|+++.|+.+..+++ 
T Consensus       328 ~~~~~~~~~~~~~~--~~~~~~-----~~--~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~  397 (467)
T PRK09556        328 VACIALALIIFTLG--VYQHAT-----SE--YMYLASLFAL-GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLF  397 (467)
T ss_pred             HHHHHHHHHHHHHH--HHHhcC-----cH--HHHHHHHHHH-HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence            54332222221111  111111     11  1111111111 1111222222235667999999999999999999997 


Q ss_pred             HHHHHHHHHHHHHH------------HhcchhHHHHHHHHHHHHHHHHH
Q 020863          245 SNLIVAQTFLTVAE------------LVGTGATFLILAGIAVLAVVFVI  281 (320)
Q Consensus       245 ~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~  281 (320)
                      ++.+++.+...+.+            ..||...|.++.++.+++.+...
T Consensus       398 g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        398 GDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             hHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            66788888888777            45677788777777776655443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.58  E-value=3.4e-14  Score=122.58  Aligned_cols=239  Identities=19%  Similarity=0.233  Sum_probs=131.2

Q ss_pred             CchHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccc----
Q 020863            9 GTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVR----   83 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   83 (320)
                      .+||..|++.++.+++..++ .+.+.|+|+-. --.+.||-+       +     ++.+..    +++.+. +..+    
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-GLP~ie~~~-------~-----d~~e~~----~~~~~~-~~ls~~~i  243 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-GLPPIEEYR-------G-----DPLEIY----EEEKEN-EGLTAWQI  243 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-CCCCHHHhh-------c-----Cchhhh----hhhccC-CCccHHHH
Confidence            38999999999998876444 55677777431 001111111       0     000000    011110 0011    


Q ss_pred             -hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020863           84 -YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--  159 (320)
Q Consensus        84 -~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~--  159 (320)
                       .+..++||..|...+..+.+..     .=+.+..|.|.++.+ .+++..+. .......-.++++|+++.||++||+  
T Consensus       244 ~~~YVL~Nk~iW~la~a~vfvYi-----vR~gi~dW~p~YL~e~k~~s~~~a-~~a~~lfE~agl~G~Ll~GwlSDklfk  317 (448)
T COG2271         244 FVKYVLKNKLIWLLALANVFVYV-----VRYGINDWGPLYLSEVKGFSLVKA-NWAISLFEVAGLPGTLLAGWLSDKLFK  317 (448)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhcCCCHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence             3346788877765554332211     112344567765554 56654444 4444444555899999999999995  


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHH
Q 020863          160 GRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA  239 (320)
Q Consensus       160 grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~  239 (320)
                      |||......+.......+   ..+...+..  +   .++..+ ..+...++.-|+--+.-..+.|..|.+.-|++.|+..
T Consensus       318 grR~p~~~i~~~~i~~~~---~~~w~~~~~--~---~~l~~~-~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~G  388 (448)
T COG2271         318 GRRGPMALIFMLLITASL---VLYWLAPNG--S---YLLDAI-LLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVG  388 (448)
T ss_pred             cccchHHHHHHHHHHHHH---HHHHcCCCc--c---HHHHHH-HHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhh
Confidence            577654322211111111   111111111  1   112222 2222233333343344567789999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 020863          240 TVNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       240 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  280 (320)
                      .++.+ |+..+......+.+..||...|+++.+.++++.+..
T Consensus       389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            99998 777766666666677899888888776666665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.56  E-value=3.1e-13  Score=124.45  Aligned_cols=235  Identities=13%  Similarity=0.073  Sum_probs=132.3

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||..|++.++..++..+..+++||+|+..    ++++..+                       +.    ...++++.+
T Consensus       171 ~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~~~-----------------------~~----~~~~l~~~~  219 (491)
T PRK11010        171 LGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKTLE-----------------------QA----VVAPLRDFF  219 (491)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccchh-----------------------hh----HHHHHHHHH
Confidence            4799999999988888777766789986421    1000000                       00    001233455


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      ++++.+....... +......   ....+..|++.+..|.+..+.+........+..+++.+++|+++||+|||+.+..+
T Consensus       220 ~~~~~~~~ll~~~-l~~~~~~---~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~  295 (491)
T PRK11010        220 GRNNAWLILLLIV-LYKLGDA---FAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIF  295 (491)
T ss_pred             cCcCHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5555444333322 1111111   11223445555667887665554433344455789999999999999998876544


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~  248 (320)
                      .....++...+... ....    ...  +.......+.....+.+. +..+++..++.|++.+++..|+.+....++..+
T Consensus       296 ~~l~~l~~l~~~~l-~~~~----~~~--~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~  367 (491)
T PRK11010        296 GILQGVSNAGYWLL-SITD----KNL--YSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVY  367 (491)
T ss_pred             HHHHHHHHHHHHHH-Hhcc----ccH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            43333332222111 1111    011  111111111111111112 223577789999999999999999988888888


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          249 VAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       249 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      ++.....+.+..|+...|.+.+.+.+.+.+... ..+++
T Consensus       368 ~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~  405 (491)
T PRK11010        368 VGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT  405 (491)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            887778888888887777777777776655543 34443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.56  E-value=2.2e-13  Score=121.52  Aligned_cols=247  Identities=19%  Similarity=0.302  Sum_probs=130.5

Q ss_pred             CchHHHHhhhhHHHHHHHHHh-hcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVLM-LFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~-~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|.+.+++.++..+.. ...||+|+--. ..++++..+..++...            +..+++.+.++....++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  211 (399)
T TIGR00893       145 FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGLLA------------EQQGKGPSTPKKYQIKEL  211 (399)
T ss_pred             CCchHHHHHHHHHHHHHHHHhhheecCCCCccc-cCCHHHHhhcchhhcc------------ccccccccCCCccchHHH
Confidence            469999999888877765553 45677663210 0111111000000000            000000111112235566


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      +++++.+...+....     ..........+.|.+++ ..+.+..+.. .......+..+++.+++++++||+|||+...
T Consensus       212 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  285 (399)
T TIGR00893       212 LKDRRVWGLALGQFL-----VNIGLGFFLTWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMILGGRLSDLLLRRGKSL  285 (399)
T ss_pred             hcCHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence            777665544333211     11222233345566655 4565544433 3344455567889999999999999996211


Q ss_pred             HH-hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          167 SS-LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       167 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      .. ......+..............  ...  +. .... .....+..+..+..+.+.+|.+|++.|+++.|+.+....++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g  359 (399)
T TIGR00893       286 VFARKTAIIAGLVLSLLMFATNYV--NIP--YA-ALAL-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG  359 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccc--hhH--HH-HHHH-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHh
Confidence            11 111111111111111111100  011  11 1111 11122233356677889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHH
Q 020863          246 NLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       246 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~  280 (320)
                      +.+++.+...+.+..| +...+.+.+++.+++.+..
T Consensus       360 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9999998888888777 7777777666666665544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.56  E-value=7.2e-14  Score=127.07  Aligned_cols=253  Identities=15%  Similarity=0.199  Sum_probs=132.7

Q ss_pred             CchHHHHhhhhHHHHHHH-HHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQF-VLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~-~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|++.++.+++.. +....+||+|+....+  +.+..+   . .......+       +.+++.+. ++.....+
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~---~-~~~~~~~~-------~~~~~~~~-~~~~~~~~  247 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP--PIEEYR---N-DYPDDYNE-------KAEQELTA-KEIFMQYV  247 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC--Cchhcc---c-cccccccc-------ccccccch-HHHHHHHH
Confidence            479999999888877754 4456789988652111  101000   0 00000000       00000000 00001134


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      ++++..+...+.....     ....+....|.|.++++ .|.+...... ...+..+.++++.+++|+++||+++|+...
T Consensus       248 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~l~~~~g~s~~~~~~-~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  321 (438)
T TIGR00712       248 LPNKLLWYIAIANVFV-----YLLRYGVLDWSPTYLKEVKHFALDKSSW-AYFLYEYAGIPGTLLCGWMSDKVFKGNRGA  321 (438)
T ss_pred             ccCchHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHccCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHhccCcccH
Confidence            5666665543332211     11222334566777765 4666544333 344555567899999999999996543222


Q ss_pred             HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHH
Q 020863          167 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN  246 (320)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~  246 (320)
                      .+............ .+......  +.   +......... .+...+..........|.+|++.|+++.|+.+..++.++
T Consensus       322 ~~~~~~~~~~~~~~-~~~~~~~~--~~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg  394 (438)
T TIGR00712       322 TGVFFMTLVTIAVI-VYWMNPAG--NP---LVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  394 (438)
T ss_pred             HHHHHHHHHHHHHH-HHHhcCCC--ch---HHHHHHHHHH-HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhh
Confidence            22211111111111 11111110  11   1111111111 111112222223456799999999999999988888765


Q ss_pred             -HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          247 -LIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       247 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                       .+++.+...+.+..|+...+.+.+++..++.+...+..||.|
T Consensus       395 ~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       395 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             567888888888888888888888877777777778888865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.55  E-value=4e-13  Score=119.92  Aligned_cols=216  Identities=18%  Similarity=0.125  Sum_probs=115.0

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||+.|++.+++.++..+.+..+||+|++...+++.                                ++...+.++.+
T Consensus       167 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~  214 (394)
T TIGR00883       167 WGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH--------------------------------KKKRGPIRETL  214 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc--------------------------------ccccCCHHHHH
Confidence            4799999999988888777777888988653211000                                00111233444


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      ++++.+.  ........+ .....+....+.|.+. +..+.+...... ......+...++.+++++++||+|||+....
T Consensus       215 ~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  290 (394)
T TIGR00883       215 TKHRKPF--LLGLGLVIA-TTTTFYLITTYLPTYLTQTLGLSANSALL-VLMLSLILFFITIPLSGALSDRIGRRPVLII  290 (394)
T ss_pred             HhchHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            4433111  111111111 1122233334566666 456666544333 3444555578888999999999999997654


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHH-HHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV-NWISN  246 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~-~~~~~  246 (320)
                      ......+.......... ...    ..  +.......+.... .....+..+.+.+|.+|++.|+++.|+.... +.++.
T Consensus       291 ~~~~~~~~~~~~~~~~~-~~~----~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~  362 (394)
T TIGR00883       291 FTVLAALLAVPLLMALL-DSG----SF--TLFFFLVLGLALI-GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG  362 (394)
T ss_pred             HHHHHHHHHHHHHHHHh-cCC----ch--HHHHHHHHHHHHH-HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh
Confidence            33322222211111111 111    11  1111111111111 1122344567889999999999998885544 44666


Q ss_pred             HHHHHHHHHHHHHhc-chhHHHH
Q 020863          247 LIVAQTFLTVAELVG-TGATFLI  268 (320)
Q Consensus       247 ~~~~~~~~~~~~~~g-~~~~~~~  268 (320)
                      .+++.+...+.+..| +...++.
T Consensus       363 ~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       363 GFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             hHHHHHHHHHHHHcCcchhHHHH
Confidence            677777777777776 4444333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.54  E-value=1.1e-13  Score=124.75  Aligned_cols=147  Identities=14%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             cceeeeehHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-HHhHHHHHHHHHHHHHHHhcCC
Q 020863          112 INTVMYYSPTIVQMA--GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAFISGSS  188 (320)
Q Consensus       112 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      ++.+..|.|.++++.  +.+.... ........+...++.+++|+++||++||+... .......+..   ..... .. 
T Consensus       258 ~~~~~~~~p~~l~~~~~~~s~~~~-~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~---~~~~~-~~-  331 (412)
T TIGR02332       258 LSAINIWTPQILQSFNQGSSNIMI-GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW---LLASA-TD-  331 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHh-HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH---HHHHh-cC-
Confidence            344556788888874  3343333 33344555667899999999999999877532 2222222211   11111 10 


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHH
Q 020863          189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFL  267 (320)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~  267 (320)
                         ..   .....++... .+......+..+....|.+|++.|+++.|+.+..+++++.+++.+...+.+..| +...+.
T Consensus       332 ---~~---~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~  404 (412)
T TIGR02332       332 ---HN---LIQLLGIIMA-SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW  404 (412)
T ss_pred             ---CH---HHHHHHHHHH-HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence               01   1111111111 111111223345566789999999999999999999999999988887777665 666665


Q ss_pred             HHHH
Q 020863          268 ILAG  271 (320)
Q Consensus       268 ~~~~  271 (320)
                      ++++
T Consensus       405 ~~~~  408 (412)
T TIGR02332       405 FVAA  408 (412)
T ss_pred             HHHH
Confidence            5444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.53  E-value=4.7e-13  Score=118.74  Aligned_cols=147  Identities=16%  Similarity=0.092  Sum_probs=92.8

Q ss_pred             hHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 020863          119 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI  198 (320)
Q Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (320)
                      .+.+.++.+.+...... ......+...++.++.|+++||+|||+.+..+.....++...+...  .  ..     ....
T Consensus       228 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~--~~-----~~~~  297 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVL-AVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI--P--ML-----NDVL  297 (377)
T ss_pred             HHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc--c--cc-----hhHH
Confidence            34455666765443333 3444555678899999999999999998766554444443322211  1  00     0111


Q ss_pred             HHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          199 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      ......+.. ....+..+....+.+|.+|++.|+++.|+.+....+++.+++.+...+.+..|+...|.+.+++.+++
T Consensus       298 ~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       298 FLATVALVF-FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHH-HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            111111111 11112233445678899999999999999999999999999988888888888877777766665544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.48  E-value=4.8e-12  Score=112.53  Aligned_cols=152  Identities=16%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             hHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 020863          119 SPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW  197 (320)
Q Consensus       119 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (320)
                      .|.++ +..|.+....+.. .........++.+++|++.||+|||+....+.....+....+  ....       ..  +
T Consensus       222 ~~~~~~~~~g~~~~~~g~~-~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~--~~~~-------~~--~  289 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLM-MGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL--AADN-------SL--W  289 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHHH-------HH--H
Confidence            44444 5567665443332 223334456778889999999999997765443322222111  1110       00  1


Q ss_pred             HHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          198 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                      .......+.....+ ...+....+..|.+|++ |+++.|+.+...+++..+++.+...+.+..|+...|.+.+.+.+++.
T Consensus       290 ~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~  367 (375)
T TIGR00899       290 ALLMLQLLNAIFIG-ILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL  367 (375)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            11111111111111 12334456778998876 56899999988889999998888888887888777777776666665


Q ss_pred             HHHHhhcc
Q 020863          278 VFVILFVP  285 (320)
Q Consensus       278 ~~~~~~~p  285 (320)
                      +.. .+++
T Consensus       368 ~~~-~~~~  374 (375)
T TIGR00899       368 FCL-LLIK  374 (375)
T ss_pred             HHH-heec
Confidence            543 3443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.46  E-value=6.1e-12  Score=112.79  Aligned_cols=164  Identities=13%  Similarity=0.091  Sum_probs=104.1

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ....+.|.++++.|.+...... ...+..+.++++.++.+++.||+|||+....+.....++...+.+   ....    .
T Consensus       223 ~~~~~lp~~l~~~g~s~~~ag~-~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~---~~~~----~  294 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYSGS-LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW---LPLQ----L  294 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhhhH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH---ccch----H
Confidence            3445667777778877554444 344555668899999999999999998776654443333322211   1110    0


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAG  271 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  271 (320)
                        ......   +. .....+..+.......+.+ |++.|++..|+.+..+.+++.+++.+...+.+..| +...|.+.++
T Consensus       295 --~~~~~~---l~-g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~  368 (393)
T PRK09705        295 --PVLWAM---VC-GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHAL  368 (393)
T ss_pred             --HHHHHH---HH-HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence              011111   11 1111122233334445666 46789999999999999999999999988888876 5566777666


Q ss_pred             HHHHHHHHHHhhcccCCCCC
Q 020863          272 IAVLAVVFVILFVPETQGLT  291 (320)
Q Consensus       272 ~~~~~~~~~~~~~pet~g~~  291 (320)
                      +++++.+....+.|||+.+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        369 CVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHHHHhccccccch
Confidence            66667676778899997664

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.46  E-value=1e-12  Score=120.66  Aligned_cols=150  Identities=12%  Similarity=0.112  Sum_probs=79.4

Q ss_pred             ehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH-----HHHHHhHHHHHHHHHHHHHHHhcCCCCC
Q 020863          118 YSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-----LALSSLAGVIISLVLLSWAFISGSSASS  191 (320)
Q Consensus       118 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      +.|.++ +..|.+...... ......++..++.+++|+++||++||+     .... .....+..+... ......    
T Consensus       274 ~~p~~l~~~~g~s~~~a~~-~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~-~~~~~l~~i~~~-~~~~~~----  346 (476)
T PLN00028        274 IIAEYFYDRFGLSLETAGA-IAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL-WIVQTLGGVFCI-WLGRAN----  346 (476)
T ss_pred             HHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH-HHHHHHHHHHHH-Hhcccc----
Confidence            455554 455877555443 444555668899999999999999762     1111 111111111111 111110    


Q ss_pred             CcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 020863          192 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG  271 (320)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  271 (320)
                       ..  ...+....++..+.. ...+..+.+.+|+.| +.|+++.|+.+..+++++.+++.+.. .....++...|.+.++
T Consensus       347 -~~--~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~  420 (476)
T PLN00028        347 -SL--GAAIVVMILFSIFVQ-AACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGV  420 (476)
T ss_pred             -hH--HHHHHHHHHHHHHHH-HhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHH
Confidence             10  111111112111111 122334566777755 67999999988888888877766542 1112246667777777


Q ss_pred             HHHHHHHHH
Q 020863          272 IAVLAVVFV  280 (320)
Q Consensus       272 ~~~~~~~~~  280 (320)
                      +.+++.++.
T Consensus       421 ~~~i~~~~~  429 (476)
T PLN00028        421 MIIACTLPV  429 (476)
T ss_pred             HHHHHHHHH
Confidence            776665544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.45  E-value=1.6e-12  Score=119.20  Aligned_cols=239  Identities=18%  Similarity=0.178  Sum_probs=122.7

Q ss_pred             chHHHHhhhhHHHHHHHHHhh-cCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH-Hhccccchhhh
Q 020863           10 TWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEEL-RKKKTVRYLDV   87 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~-~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l   87 (320)
                      +||+.|.+.++++++..++++ ..+|+|+.....+++|+  +.                +.+..+++. +.+++.+++++
T Consensus       196 gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~----------------i~~~~~~~~~~~~~~~~~~~~  257 (465)
T TIGR00894       196 GWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK--KY----------------INSSLQGQKGSTRQSLPIKAI  257 (465)
T ss_pred             CCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH--HH----------------HHhhcccccCCCCCCCCHHHH
Confidence            799999999999887766654 56788854211111111  00                000000000 11112346677


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      ++++..+...+..     +....+.+....|.|.+++ ..|.+....+.... ...+...++.+++|+++||+++|+...
T Consensus       258 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~g~l~d~~~~~~~~~  331 (465)
T TIGR00894       258 PKSLPVWAIWFAI-----FGHFWLYTILPTYLPTFISWVLRVSGKENGLLSS-LPYLFAWLCSIFAGYLADFLKSSKTLS  331 (465)
T ss_pred             hcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            8777766544432     2222233344456777665 46776655444444 445557899999999999987553210


Q ss_pred             ---HHhHHHHHHH---HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHH
Q 020863          167 ---SSLAGVIISL---VLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT  240 (320)
Q Consensus       167 ---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~  240 (320)
                         .......++.   ............    ..  +..+....+.. .+..+..+..+....|..|. .+|.+.|+.+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~  403 (465)
T TIGR00894       332 LTAARKIFNGIGGLGPGIFAYALPYLSA----AF--YLTIIILTLAN-AVSSGPLAGVLINSLDLAPR-FLGFIKGITGL  403 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC----ch--HHHHHHHHHHH-HHhhhhhhhhhhchhhcChh-HHHHHHHHHHH
Confidence               0001111111   111111111110    11  11122222111 11111223334455677765 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh--c-chhHHHHHHHHHHHHHHHH
Q 020863          241 VNWISNLIVAQTFLTVAELV--G-TGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~--g-~~~~~~~~~~~~~~~~~~~  280 (320)
                      .+.+++++++.+...+.+..  + +...|.+.+++.+++.++.
T Consensus       404 ~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       404 PGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            99988888887776554432  2 5566777776666665543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.45  E-value=1.3e-11  Score=110.68  Aligned_cols=219  Identities=18%  Similarity=0.202  Sum_probs=122.1

Q ss_pred             chHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863           10 TWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      +||+.|++.++++++..+. +..+||.|+-     + ++.                           .     .+..+.+
T Consensus       161 gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~---------------------------~-----~~~~~~~  202 (390)
T PRK03545        161 GWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H-SGS---------------------------L-----KSLPLLF  202 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C-cch---------------------------H-----HHHHHHH
Confidence            7999999999888766444 4456776421     0 000                           0     0122355


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      ++++.+......... ....+   ....+..|.+.+..|.+....... .....+..+++.++.++++||++||......
T Consensus       203 ~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~~g~s~~~~~~~-~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~  277 (390)
T PRK03545        203 RRPALVSLYLLTVVV-VTAHF---TAYSYIEPFVQQVAGLSENFATLL-LLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI  277 (390)
T ss_pred             hCcHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            666655443332211 11111   111233344444457665544443 3445556789999999999999988754332


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~  248 (320)
                      . ...++...+. .  ...     ..  +...++..+.. ....+.++....+..|..| +.|+++.|+.+....++..+
T Consensus       278 ~-~~~~~~~~l~-~--~~~-----~~--~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~  344 (390)
T PRK03545        278 A-LLLVCLLLLL-P--AAN-----SE--WHLSVLSIFWG-IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA  344 (390)
T ss_pred             H-HHHHHHHHHH-H--Hhc-----hH--HHHHHHHHHHH-HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence            2 2222211111 1  110     10  11111111111 1122223333455667777 57899999998888889989


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhc
Q 020863          249 VAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV  284 (320)
Q Consensus       249 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
                      ++.+.+.+.+..|+...|.+.+.+.+++.++.....
T Consensus       345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            988888888888888888888877777776655444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.44  E-value=7.7e-12  Score=112.82  Aligned_cols=172  Identities=12%  Similarity=0.076  Sum_probs=110.5

Q ss_pred             HHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHH
Q 020863          105 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFI  184 (320)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~  184 (320)
                      .+.++..-....+..|.+.++.+.+..+.....+. ......++.+..|+++||+|||+.+..+.....++.......  
T Consensus        17 ~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~-~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--   93 (412)
T TIGR02332        17 FIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATL-FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--   93 (412)
T ss_pred             HHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--
Confidence            33334444445556677778888876665554443 444467888999999999999998876665554444433221  


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 020863          185 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------  258 (320)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~------  258 (320)
                      .  +        ...+....++......+..+....+.+|.+|++.|+++.|+......++..+++.+...+..      
T Consensus        94 ~--~--------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        94 T--G--------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             c--C--------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            1  0        01111222222222222345555678999999999999999888877887777766555543      


Q ss_pred             HhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 020863          259 LVGTGATFLILAGIAVLAVVFVILFVPETQG  289 (320)
Q Consensus       259 ~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g  289 (320)
                      ..||...|.+.+...++..++.++++||+..
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            2478888888777766666666677888764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=9.1e-12  Score=112.51  Aligned_cols=143  Identities=14%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      ...+..+++.+..++++||+|||+++..+.....++...+...  . ..   ... .+...+...+...... ...+...
T Consensus       259 ~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~--~-~~---~~~-~~~l~l~~~l~g~~~~-~~~~~~~  330 (418)
T TIGR00889       259 LSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG--D-PE---YFG-YALLFLSMIVYGCAFD-FFNISGS  330 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--C-cc---hhh-HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            3444467788899999999999998877665544443222211  0 00   000 0111111111111111 1233445


Q ss_pred             hcccccCCccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q 020863          220 TLNSEVYPEQYRGICGGMSA-TVNWISNLIVAQTFLTVAELV------GTGATFLILAGIAVLAVVFVILFVPETQGL  290 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~pet~g~  290 (320)
                      .+.+|.+|++.|+++.|+.+ ....+++.+++.+...+.+..      ||...|.+.+++.+++.+..+++.||+++.
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            67889999999999999996 556678888888888777764      356678777777777777778888888654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.44  E-value=4.4e-12  Score=113.44  Aligned_cols=164  Identities=23%  Similarity=0.224  Sum_probs=108.8

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ....++.|.+.++.|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.......    .     
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~-----  103 (398)
T TIGR00895        34 AAMGFAAPAISAEWGLDPVQLGFLFS-AGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA----T-----  103 (398)
T ss_pred             HHHHhhHHHHhhccCCCHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----c-----
Confidence            33446678888888887655444433 4445578899999999999999998876655544443332211    1     


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGI  272 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  272 (320)
                      . . +..++ ..+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..|+...+.+.+.+
T Consensus       104 ~-~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~  180 (398)
T TIGR00895       104 N-V-TQLLI-LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA  180 (398)
T ss_pred             c-h-HHHHH-HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhH
Confidence            0 0 11111 1222222222334556788899999999999999999888889888888777777777877777776555


Q ss_pred             HHHHHHHHHhhcccCCC
Q 020863          273 AVLAVVFVILFVPETQG  289 (320)
Q Consensus       273 ~~~~~~~~~~~~pet~g  289 (320)
                      ..+..++...++||+..
T Consensus       181 ~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       181 PLLLLLLLMRFLPESID  197 (398)
T ss_pred             HHHHHHHHHHhCCCCCh
Confidence            55555556677888643

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.43  E-value=1.5e-12  Score=118.99  Aligned_cols=217  Identities=13%  Similarity=0.064  Sum_probs=113.6

Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchH
Q 020863           86 DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKK  163 (320)
Q Consensus        86 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~--grR~  163 (320)
                      ++++++.++....... +   . ..++.....+.|.+.++.+.+....+.. ..+..+..+++.+++++++||.  ++|+
T Consensus       236 ~~~~~~~~~~~~~~~~-l---~-~~~~~~~~~~l~~~~~~~g~s~~~~g~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~  309 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNV-I---M-FLGFFAPIIFLVPYAKDKGVDEYEAAFL-LSIIGFVDIFARPSCGLIAGLKWIRPHV  309 (455)
T ss_pred             HHhcCchHHHHHHHHH-H---H-HHHccchHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCHHH
Confidence            4667666654333211 1   1 1222333345666777777765554443 3344555677888899999973  3343


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHH
Q 020863          164 LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW  243 (320)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~  243 (320)
                      ...........+...+....  ..     . . +..++...++ ........+..+.+..|.+|++.|+++.|+.+....
T Consensus       310 ~~~~~~~~~~~~l~~ll~~~--~~-----~-~-~~~~i~~~~~-G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  379 (455)
T TIGR00892       310 QYLFSFALLFNGLTHLLCAL--AG-----D-Y-TGLVIYCIFF-GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVEC  379 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hc-----h-H-HHHHHHHHHH-HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHH
Confidence            33222111111111111111  11     1 1 1111111111 122222234456777899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcccccccCcchhhcccCC
Q 020863          244 ISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAWGSSLNTESLLEHGN  318 (320)
Q Consensus       244 ~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (320)
                      +++.+++.+...+.+..+ +...|.+.+++.++++++..+-.-+-.++.-.|-+...++.+.++++++|.+..|.|
T Consensus       380 lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (455)
T TIGR00892       380 CAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQKAALEREGARDKKDAEGDSRESE  455 (455)
T ss_pred             HHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCC
Confidence            999999888887777664 666676665555554443222111222333333344555555566666666555543

>TIGR00895 2A0115 benzoate transport

Probab=99.43  E-value=2.8e-12  Score=114.72  Aligned_cols=227  Identities=20%  Similarity=0.232  Sum_probs=114.9

Q ss_pred             CchHHHHhhhhHHHHH-HHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAII-QFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~-~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|.+.++..++ .++...++||+|++...+ +.+++.+..++.......+.+ ++..++  ++.+...+.....+
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~  243 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQ--KATQGTKRSVFKAL  243 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-cccccc--ccccchhhHHHHHH
Confidence            4799999998655554 445567899999887655 344433333322111100000 000000  00000000111223


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      ++++..+........ .. .....+.....+.|.+.+..+.+...... ......+..+++.+++++++||+|||+....
T Consensus       244 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (398)
T TIGR00895       244 FQGKTARITVLLWLL-YF-MLLVGVYFLTNWLPKLMVELGFSLSLAAT-GGALFNFGGVIGSIIFGWLADRLGPRVTALL  320 (398)
T ss_pred             hcchhHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            333322222222111 11 11223333445667777777876554443 3444555678999999999999999954433


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      ... ..+....+..  ... .    .   ........+. .....+..+..+.+.+|.+|++.|+++.|+....+.++..
T Consensus       321 ~~~-~~~~~~~~~~--~~~-~----~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  388 (398)
T TIGR00895       321 LLL-GAVFAVLVGS--TLF-S----P---TLLLLLGAIA-GFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI  388 (398)
T ss_pred             HHH-HHHHHHHHHH--Hhh-C----H---HHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            222 2222222111  011 0    1   1111111111 1222223455678889999999999999999998888888


Q ss_pred             HHHHHHH
Q 020863          248 IVAQTFL  254 (320)
Q Consensus       248 ~~~~~~~  254 (320)
                      +++.+..
T Consensus       389 ~g~~~~G  395 (398)
T TIGR00895       389 IGPILAG  395 (398)
T ss_pred             HHHHhHH
Confidence            7766544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.41  E-value=2.6e-11  Score=115.40  Aligned_cols=159  Identities=18%  Similarity=0.118  Sum_probs=98.6

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      +....|.+.+..+.+....++..+ ...++.+++.+++|+++||+|||+.++.+.+...++.+...+.  .       . 
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s-~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~-------s-  254 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGL-IVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--Q-------G-  254 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--h-------h-
Confidence            445567788888887666555444 4455578999999999999999998877655444443332221  1       0 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------c
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-------------G  261 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-------------g  261 (320)
                        ...++...++..+...+..+....+.+|.+|++.|+...++......+|.++++.+...+....             +
T Consensus       255 --~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~g  332 (742)
T TIGR01299       255 --YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHS  332 (742)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccccc
Confidence              1112222222233333345677889999999999999999888777777776655433332222             3


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          262 TGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      |...+++.+...+ ..++..+++||+
T Consensus       333 WR~l~~i~~lp~l-l~ll~~~~lPES  357 (742)
T TIGR01299       333 WRVFVIVCAFPCV-FAIGALTFMPES  357 (742)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHcCCC
Confidence            4444444444333 334556788998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.39  E-value=6.4e-12  Score=112.03  Aligned_cols=162  Identities=16%  Similarity=0.183  Sum_probs=109.1

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .....|.+.++.|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.......  .       . 
T Consensus        13 ~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~-------~-   81 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSAAQYGYVFS-AFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--G-------A-   81 (399)
T ss_pred             hhHhHHHHHHhhCCChhhHHHHHH-HHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--c-------C-
Confidence            344567788888887666554444 4455578899999999999999998776655544444333221  1       0 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      + +...+. .+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..++...|.+.+.+.+
T Consensus        82 ~-~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  159 (399)
T TIGR00893        82 Y-VSLYIL-RVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGI  159 (399)
T ss_pred             H-HHHHHH-HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            0 111121 12222222233455567889999999999999999999999998888877777777888888887777766


Q ss_pred             HHHHHHHhhcccCCC
Q 020863          275 LAVVFVILFVPETQG  289 (320)
Q Consensus       275 ~~~~~~~~~~pet~g  289 (320)
                      +..+..+++.||++.
T Consensus       160 ~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHhhheecCCCC
Confidence            666655566676544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.39  E-value=3.9e-11  Score=107.92  Aligned_cols=225  Identities=13%  Similarity=0.091  Sum_probs=115.7

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||..|++.++..++..+...++||+++..   +++++..                        ++.    ..++++++
T Consensus       158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~------------------------~~~----~~~~~~l~  206 (402)
T PRK11902        158 LGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLG------------------------EAV----VGPLRDFF  206 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhH------------------------HHH----HHHHHHHH
Confidence            3799999998888877666667788876431   1100000                        000    01234567


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      ++|..+..+.............    ..+..+.+.+..|.+....+........+..+++.++++++.||+|||+....+
T Consensus       207 ~~~~~~~~l~~~~l~~~~~~~~----~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~  282 (402)
T PRK11902        207 SRRGAWALLLLIVLYKLGDAFA----GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLF  282 (402)
T ss_pred             hCcCHHHHHHHHHHHHhHHHHH----HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            7776665444322221111111    112334556667776554444333333344678899999999999999876544


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH---HHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA---LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      .....+....+... .....    ..  +.......   +..........+....+..+.+|.+.++.    ......++
T Consensus       283 ~~~~~l~~l~~~~~-~~~~~----~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~  351 (402)
T PRK11902        283 GVLQAVSNLGYWVL-AVTPK----HL--WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVG  351 (402)
T ss_pred             HHHHHHHHHHHHHH-HhcCC----cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHH
Confidence            44333332222111 11110    11  11111111   11111122223344567777888665543    33334445


Q ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 020863          246 NLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF  279 (320)
Q Consensus       246 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  279 (320)
                      ...++.+-..+.+..|+...|...+.+++++.++
T Consensus       352 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        352 RVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            5444555566677888877777777666666543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.39  E-value=6.1e-11  Score=106.38  Aligned_cols=155  Identities=12%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             ehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          118 YSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       118 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      +.|.+++ ..+.+......... ...+..+++.+++|+++||+|||+....+.....+....+  .. . .     ..  
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~-~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~--~~-~-~-----~~--  305 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMG-TAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM--LM-A-H-----SP--  305 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HH-H-h-----hH--
Confidence            4565554 45666544444333 3334467788999999999999987654433332221111  11 1 1     00  


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      +..+....+.....+.. .+....+..|.+|.+ |+++.++.+...+++..+++.+...+.+..|+...+.+.+++.+++
T Consensus       306 ~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~  383 (393)
T PRK15011        306 AILLGLQLLNAIYIGIL-GGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            11111111111111111 122235667999865 8899999888888888888888888777778777777666666665


Q ss_pred             HHHHHhhcccC
Q 020863          277 VVFVILFVPET  287 (320)
Q Consensus       277 ~~~~~~~~pet  287 (320)
                      .+ ..++.||+
T Consensus       384 ~~-~~~~~~~~  393 (393)
T PRK15011        384 LF-CLLRIKDV  393 (393)
T ss_pred             HH-HHHhhcCC
Confidence            54 34455654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.3e-12  Score=116.85  Aligned_cols=138  Identities=25%  Similarity=0.423  Sum_probs=83.5

Q ss_pred             CCchHHHHhhhhHHHHHHHHH-hhcCCCChH--HHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccch
Q 020863            8 PGTWRWMLGVSAVPAIIQFVL-MLFMPESPR--WLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY   84 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~-~~~lpESp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (320)
                      ..+|||+|++.+++.++..++ .+++|+.|.  |+..  ++|+. -+.++.++.+.          .  ...++.+...+
T Consensus       202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~--~~ek~-~~~~~~~~~~~----------~--~~~~~~~~~~~  266 (495)
T KOG2533|consen  202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT--DEEKE-LVVERLRESPS----------G--GIENKFKWKGF  266 (495)
T ss_pred             cCCceeehhHHHHHHHHHHheEEEEecCChhhccccc--hHHHH-HHHHHHHhccC----------C--CcccccCHHHH
Confidence            357999999999999876544 678999997  3321  12111 11111110000          0  00000223456


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----h
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----F  159 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr----~  159 (320)
                      ++.++++..|...+.     .+......+...+|+|.++++ .+.+. ..+...+++..+.++++.+++|+++||    .
T Consensus       267 ~~a~~dp~vw~~~l~-----~~~~~lv~~~~~~~lpl~l~~~~~~s~-~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~  340 (495)
T KOG2533|consen  267 KEALKDPGVWPFSLC-----YFFLKLVNYGFSYWLPLYLKSNGGYSE-LQANLLSTPYDVGGIVGLILAGYLSDRLKTIF  340 (495)
T ss_pred             HHHHhchhHHHHHHH-----HHHHhhccccHHHHHHHHHHcCCCcCh-HHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence            778888887665444     222233445677889999888 33443 345566778888899999999999999    5


Q ss_pred             cchHHHH
Q 020863          160 GRKKLAL  166 (320)
Q Consensus       160 grR~~~~  166 (320)
                      .+|....
T Consensus       341 ~~~~~~~  347 (495)
T KOG2533|consen  341 ARRLLFI  347 (495)
T ss_pred             HHHHHHH
Confidence            5555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.37  E-value=1.5e-11  Score=111.25  Aligned_cols=134  Identities=13%  Similarity=0.098  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchh
Q 020863          141 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT  220 (320)
Q Consensus       141 ~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (320)
                      .....+++.+++|+++||+|||+....+.....+....+..    .+     ..  +.......+.... .....+....
T Consensus       271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~----~~-----~~--~~~~~~~~l~g~~-~~~~~~~~~~  338 (420)
T PRK09528        271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF----AT-----GP--LEVSILKLLHAFE-VPFLLVGVFK  338 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh----cc-----cH--HHHHHHHHHHHHH-HHHHHHHHHH
Confidence            34446788999999999999999876554444433332221    11     11  1111111111111 1111122346


Q ss_pred             cccccCCccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhccc
Q 020863          221 LNSEVYPEQYRGICGGM-SATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       221 ~~~ElfP~~~R~~~~gi-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pe  286 (320)
                      +.+|.+|++.|++..+. .+....+++.+++.....+.+..|+...|.+.+++.++..++.++..++
T Consensus       339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77889999999887665 4556678888888888888888888888888777776666555555444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.37  E-value=5.2e-11  Score=106.66  Aligned_cols=159  Identities=21%  Similarity=0.186  Sum_probs=105.2

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.+.+..+.+...+ .......++.+..|+++||+|||+.+..+.....++.......    +     ..  
T Consensus        30 ~~~~~l~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~-----~~--   97 (390)
T PRK03545         30 GLLSDIAQSFHMQTAQVGLMLT-IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA----W-----NF--   97 (390)
T ss_pred             cchHHHHhHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh----c-----cH--
Confidence            3467888899988766555444 3344467788888999999999999887765555544333221    1     11  


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      + .+....+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..||...|.+.+.+.++.
T Consensus        98 ~-~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~  176 (390)
T PRK03545         98 T-VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALIT  176 (390)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence            1 111111111221112234445677899999999999999888888888888877777777788888888877777666


Q ss_pred             HHHHHhhcccCC
Q 020863          277 VVFVILFVPETQ  288 (320)
Q Consensus       277 ~~~~~~~~pet~  288 (320)
                      .+..+...||.+
T Consensus       177 ~~~~~~~~~~~~  188 (390)
T PRK03545        177 LLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHhCCCCC
Confidence            655556667643

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.37  E-value=7.8e-11  Score=106.34  Aligned_cols=173  Identities=12%  Similarity=0.051  Sum_probs=109.3

Q ss_pred             HHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHH
Q 020863          104 QAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF  183 (320)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~  183 (320)
                      ..+..+.......--.|.+.++.+.+........+ .......++.++.|+++||+|||+.+..+.....++....... 
T Consensus        24 ~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-  101 (413)
T PRK15403         24 YDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVS-LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-  101 (413)
T ss_pred             HHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-
Confidence            33333333333334456677788887666555444 3445577889999999999999998876655444443332211 


Q ss_pred             HhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 020863          184 ISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTG  263 (320)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~  263 (320)
                         +     ..  + .++...+..........+..+.+..|.+|++.|++..++......++..+++.+-..+.+..||.
T Consensus       102 ---~-----~~--~-~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403        102 ---T-----SM--T-QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             ---C-----CH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence               1     11  1 11111122221111223345678889999999999999888888888888777666666667888


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccCCC
Q 020863          264 ATFLILAGIAVLAVVFVILFVPETQG  289 (320)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~pet~g  289 (320)
                      ..|++.+.+.++..+..++.+||++.
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            88888777777666655667898754

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.37  E-value=5.5e-11  Score=108.06  Aligned_cols=161  Identities=19%  Similarity=0.165  Sum_probs=107.1

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ....+.|.+.++.|.+..+.+...+ ...+...++.+++|+++||+|||+.+..+.....++.+......         .
T Consensus        41 ~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~  110 (434)
T PRK11663         41 SFNAAMPEMLADLGLSRSDIGLLAT-LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS---------S  110 (434)
T ss_pred             hHHHhhHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh---------H
Confidence            3455678888999987666555444 44555788999999999999999988776665555544332210         0


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                      .  + .+....+..........+....+.+|.+|++.|+++.|+.+....+++.+++.+...+.+..||...|.+.+.+.
T Consensus       111 ~--~-~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~  187 (434)
T PRK11663        111 L--W-AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA  187 (434)
T ss_pred             H--H-HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            0  1 111111111111112234456788999999999999999999888999888887777777788888888776665


Q ss_pred             HHHHHHHHhhcccC
Q 020863          274 VLAVVFVILFVPET  287 (320)
Q Consensus       274 ~~~~~~~~~~~pet  287 (320)
                      ++..++..+++||+
T Consensus       188 ~~~~~~~~~~~~~~  201 (434)
T PRK11663        188 IVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHcCCC
Confidence            55544445566664

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.36  E-value=3.7e-11  Score=107.20  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=108.6

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .....|.+.++.|.+..+.....+ .......++.++.|+++||+|||+.+..+.....++.......    +     . 
T Consensus        24 ~~~~~p~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----~-----~-   92 (385)
T TIGR00710        24 YLPAFPEIAADLSTPASIVQMTLT-LYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS----N-----N-   92 (385)
T ss_pred             hcccHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----c-----c-
Confidence            334567888888987766554444 4455578899999999999999998877665554444433221    1     1 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      . +...+ ..+..........+....+..|.+|++.|++..|+......++..+++.+...+.+..++...+.+.+.+.+
T Consensus        93 ~-~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~  170 (385)
T TIGR00710        93 I-ETLLV-LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGI  170 (385)
T ss_pred             H-HHHHH-HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            0 11111 111112211122344557888999999999999999988888888888877777777788888877777766


Q ss_pred             HHHHHHHhhcccCCCC
Q 020863          275 LAVVFVILFVPETQGL  290 (320)
Q Consensus       275 ~~~~~~~~~~pet~g~  290 (320)
                      +..+..++..||++.+
T Consensus       171 ~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       171 LLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            6666666677887544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.36  E-value=2.9e-12  Score=113.72  Aligned_cols=228  Identities=18%  Similarity=0.237  Sum_probs=113.8

Q ss_pred             CchHHHHhhhhHHHHHH-HHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQ-FVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~-~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|++.++..++. ++....+||+|+....+.++++..+      +.+   ++    . +.+++.....+...+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~----~-~~~~~~~~~~~~~~~~~  212 (379)
T TIGR00881       147 YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNE------EPD---GD----A-EKKEEELTKKQIFLQYV  212 (379)
T ss_pred             CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCccc------ccc---cc----c-ccccccccchHHHHHHH
Confidence            47999999988777665 4445677887753211110000000      000   00    0 00000000011123445


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLA  165 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~gr-R~~~  165 (320)
                      ++++..+...+.....     .........+.|.+++ ..+.+..+... ......+...++.+++++++||.++ |+..
T Consensus       213 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~  286 (379)
T TIGR00881       213 LLNKVLWYISLGYVFV-----YVVRTGILDWSPLYLTQEKGFSKEKASW-AFTLYELGGLVGTLLAGWLSDKLFNGRRGP  286 (379)
T ss_pred             HhcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHcchhHHHHHHHHHHHcCCcchH
Confidence            6666555443332211     1111223344565554 45766544433 3444555678899999999998643 3322


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          166 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      .. ..........+... .....   ..  ........ +....+..+..+..+.+.+|.+|++.|+++.|+.+..+.++
T Consensus       287 ~~-~~~~~~~~~~~~~~-~~~~~---~~--~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  358 (379)
T TIGR00881       287 LA-VFFMALIIVSLLVY-WLNPA---AN--PLMDLICL-FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLG  358 (379)
T ss_pred             HH-HHHHHHHHHHHHHH-hcCcc---hh--HHHHHHHH-HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhh
Confidence            21 11111111111111 11000   01  01111111 11122233334445677889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchh
Q 020863          246 NLIVAQTFLTVAELVGTGA  264 (320)
Q Consensus       246 ~~~~~~~~~~~~~~~g~~~  264 (320)
                      +.+++.+...+.+..|+..
T Consensus       359 ~~~~~~~~g~l~~~~g~~~  377 (379)
T TIGR00881       359 GILAGLPLGYLADGFGWAG  377 (379)
T ss_pred             hhhhhhhHHHHHHhhcccc
Confidence            9999998888888777644

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.36  E-value=5.3e-11  Score=106.63  Aligned_cols=224  Identities=15%  Similarity=0.048  Sum_probs=118.8

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhcc
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK   89 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (320)
                      +||..|++.++..++..+...+++|.++     .++++. +                       +     +..+.++.+|
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~~-~-----------------------~-----~~~~~~~~l~  206 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVLWLKDRAV-----ASPEAP-L-----------------------A-----RRASLFRFFR  206 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCc-----Cccccc-h-----------------------h-----hHHHHHHHHc
Confidence            7999999999888776655554444321     000000 0                       0     0012345666


Q ss_pred             chhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHh
Q 020863           90 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSL  169 (320)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~  169 (320)
                      +|+.+..+........ .. ...   ..+.+.++++.|.+....+............++.+++|++.||+|+|+.+..+.
T Consensus       207 ~~~~~~~~~~~~l~~~-~~-~~~---~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       207 RPLAWSLLALALLSAM-TA-VSG---FGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             CcCHHHHHHHHHHHHH-HH-HHH---HHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6665554443222111 11 111   123455556678876655444333333345677889999999999999876554


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCc-cchhhhHHHHHHHHHHHHHH
Q 020863          170 AGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~-~~R~~~~gi~~~~~~~~~~~  248 (320)
                      ....+.... ..........  ...  ........+.....+.. .+..+....+..++ +.+++..++.++...++..+
T Consensus       282 ~~~~~~~~~-~~~~~~~~~~--~~~--~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~  355 (390)
T TIGR02718       282 GLAGSLALL-WFAQAAFWLA--PGI--AVAWSCSAFGSLITGIT-SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELI  355 (390)
T ss_pred             HHHHHHHHH-HHHHHHcccC--CcH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHH
Confidence            433222211 1111111000  010  11111111111111111 12223344455555 88999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 020863          249 VAQTFLTVAELVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       249 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  278 (320)
                      ++.+...+.+..|+...|...+++.+++.+
T Consensus       356 g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       356 ASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            999888888888877777766665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.35  E-value=2.8e-11  Score=110.05  Aligned_cols=206  Identities=12%  Similarity=0.116  Sum_probs=107.6

Q ss_pred             CchHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.+.+.++++++..++ .+..+|.++.     ++++..                         + +.+-...++++
T Consensus       170 ~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~~~~~-------------------------~-~~~~~~~~~~l  218 (437)
T TIGR00792       170 FGWFMFALVLALIGVVSLIICFFGTKERYSE-----IPKNIE-------------------------K-KLSLKQIFKAL  218 (437)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CCcccc-------------------------c-CCCHHHHHHHH
Confidence            47999999999888776555 4567776521     000000                         0 00000123456


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      +++|.++...+.........     +....+.+.+.+....+....+.. .....+..+++.++.++++||+|||+....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~  292 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLAF-----NIKNGVQVYYFTYVLGDPELFSYM-GSIAIVAGLIGVLLFPRLVKKFGRKILFAG  292 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHHH-----HHHcchhheeEeeecCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            67777665444322221111     111112222222221122222332 333455578889999999999999998776


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCC-------ccchhhhHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYP-------EQYRGICGGMSAT  240 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-------~~~R~~~~gi~~~  240 (320)
                      +.....++...+..   ...     ..  +...+...+.. +......+..+.+.+|..|       .+.+|+..|+.+.
T Consensus       293 ~~~~~~~~~~~~~~---~~~-----~~--~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~  361 (437)
T TIGR00792       293 GILLMVLGYLIFFF---AGS-----NL--PLILVLIILAG-FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF  361 (437)
T ss_pred             HHHHHHHHHHHHHH---cch-----hH--HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence            65544444333221   110     11  11111111111 1111123445667777754       4567888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Q 020863          241 VNWISNLIVAQTFLTVAELVGT  262 (320)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~g~  262 (320)
                      ...++..+++.+...+.+..|+
T Consensus       362 ~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       362 VRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            8999998888888877766554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=2.6e-10  Score=99.58  Aligned_cols=215  Identities=21%  Similarity=0.256  Sum_probs=129.9

Q ss_pred             chHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863           10 TWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      +||..|++-+..+++.++. +..+|  |+-.      +++                            ...+..+..+++
T Consensus       165 GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~------~~~----------------------------~~~~~~~~~~~l  208 (394)
T COG2814         165 GWRATFLAIAVLALLALLLLWKLLP--PSEI------SGS----------------------------LPGPLRTLLRLL  208 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC--CccC------CCC----------------------------CCcchhHHHHHh
Confidence            6999999999999887655 56788  3210      000                            000011234578


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcc-eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGIN-TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      |+|+.+..+......     +.+.+ ...|.-|.+.+..|++....++. .+.+++.+++|++++|++.|| +.|+.+..
T Consensus       209 ~~p~v~~~l~~t~l~-----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~-Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~  281 (394)
T COG2814         209 RRPGVLLGLLATFLF-----MTGHFALYTYIRPFLESVAGFSVSAVSLV-LLAFGIAGFIGNLLGGRLADR-GPRRALIA  281 (394)
T ss_pred             cCchHHHHHHHHHHH-----HcchhhhHHhHHHHHHHccCCCHhHHHHH-HHHHHHHHHHHHHHHhhhccc-cchhHHHH
Confidence            888887766653322     22322 23456677777888877665554 455666689999999999999 77776655


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccc-hhcccccCCccchhhhHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP-WTLNSEVYPEQYRGICGGMSATVNWISN  246 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ElfP~~~R~~~~gi~~~~~~~~~  246 (320)
                      ......+....+...   ..       ..+..+....+  ..++..+.... ....++ .-++.+..+.++....-+++.
T Consensus       282 ~~~l~a~~~l~l~~~---~~-------~~~~~~~~~~~--wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgi  348 (394)
T COG2814         282 ALLLLALALLALTFT---GA-------SPALALALLFL--WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGI  348 (394)
T ss_pred             HHHHHHHHHHHHHHh---cc-------hHHHHHHHHHH--HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHH
Confidence            444433333332211   11       11222222222  22222232222 233445 335668889999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 020863          247 LIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       247 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  280 (320)
                      .++..+-..+.++.|+....++.+...+++.++.
T Consensus       349 a~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         349 ALGAALGGLVLDALGYAATGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887777777666666665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.33  E-value=4.4e-11  Score=107.24  Aligned_cols=168  Identities=17%  Similarity=0.160  Sum_probs=106.9

Q ss_pred             cCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 020863          110 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA  189 (320)
Q Consensus       110 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
                      .+.+......|.+.++.+.+........ ........++.++.|+++||+|||+.+..+.....++.......    +  
T Consensus        17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----~--   89 (392)
T PRK10473         17 AGIDMYLVGLPRIAADLNASEAQLHIAF-SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----E--   89 (392)
T ss_pred             HHHHHHhhhHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh----C--
Confidence            3333344567888888888765544433 34445567888999999999999998876655544443332211    1  


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 020863          190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLIL  269 (320)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  269 (320)
                         ..  +..+... +..........+..+.+.+|.+|++.|+++.|+.+....++..+++.+...+.+..+|...+.+.
T Consensus        90 ---~~--~~~~~~~-~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         90 ---TS--SLFLAGR-FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             ---cH--HHHHHHH-HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence               10  1111111 11111111123345678889999999999999988888888777776655555566777778887


Q ss_pred             HHHHHHHHHHHHhhcccCCCC
Q 020863          270 AGIAVLAVVFVILFVPETQGL  290 (320)
Q Consensus       270 ~~~~~~~~~~~~~~~pet~g~  290 (320)
                      +.+.++..++.+++.||++.+
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCc
Confidence            777776666666777887543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.33  E-value=1.3e-10  Score=104.22  Aligned_cols=159  Identities=16%  Similarity=0.138  Sum_probs=105.5

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW  197 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (320)
                      ..|.+.++.|.+..+.....+.. .....++.++.|.++||+|||+.+..+.....++.+.....    +     . + +
T Consensus        42 ~l~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----~-----~-~-~  109 (394)
T PRK10213         42 LLTPMAQDLGISEGVAGQSVTVT-AFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA----N-----S-F-S  109 (394)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH----C-----h-H-H
Confidence            45667788888766655544443 44467889999999999999998877766655544333221    1     0 0 1


Q ss_pred             HHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          198 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                       .+....+..........+....+.+|.+|++.|+.+.|+......++..+++.+...+.+..||...|.+.+.+.++..
T Consensus       110 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        110 -LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             -HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence             1111112222222223345567788999999999999999888888888888888888787888888887766665555


Q ss_pred             HHHHhhcccCCC
Q 020863          278 VFVILFVPETQG  289 (320)
Q Consensus       278 ~~~~~~~pet~g  289 (320)
                      +......||+++
T Consensus       189 l~~~~~~p~~~~  200 (394)
T PRK10213        189 FWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHCCCCCc
Confidence            444455787654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.33  E-value=8.5e-11  Score=105.48  Aligned_cols=163  Identities=18%  Similarity=0.198  Sum_probs=102.1

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      .......|.+.++.+.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.......    +     
T Consensus        29 ~~~~~~~~~l~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~----~-----   98 (405)
T TIGR00891        29 FLVALVLAEVAGEFGLTTVDAASLIS-AALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA----P-----   98 (405)
T ss_pred             HHHHHHHHHHHHHhCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----c-----
Confidence            33445567778888887766555444 4445578899999999999999998876655444443332211    1     


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILA  270 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~  270 (320)
                      .   ...+....+..........+....+..|.+|++.|+++.|+......++..+++.+...+.+..+  |...|.+.+
T Consensus        99 ~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~  175 (405)
T TIGR00891        99 G---YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISI  175 (405)
T ss_pred             c---HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            0   11112222222222223344456788899999999999999988888888888877766666555  666666544


Q ss_pred             HHHHHHHHHHHhhcccCCC
Q 020863          271 GIAVLAVVFVILFVPETQG  289 (320)
Q Consensus       271 ~~~~~~~~~~~~~~pet~g  289 (320)
                      ...++ .++.....||++.
T Consensus       176 ~~~~~-~~~~~~~~~~~~~  193 (405)
T TIGR00891       176 LPIIF-ALWLRKNIPEAED  193 (405)
T ss_pred             HHHHH-HHHHHHhCCCChh
Confidence            33333 3334456788643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.32  E-value=1.5e-10  Score=104.34  Aligned_cols=160  Identities=17%  Similarity=0.106  Sum_probs=102.4

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.+.+........+ ...+...++.++.|.++||+|||+.+..+.....++.......  .  +      + 
T Consensus        34 ~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~--~------~-  101 (406)
T PRK15402         34 PGMLAVVEDFNAGAEWVPTSMT-AYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--Q--S------I-  101 (406)
T ss_pred             cchHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--c--c------H-
Confidence            3456677888887655444433 4455577888999999999999998876655554444433221  1  0      0 


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      + .+....+..........+..+.+..|.+|++.|+++.++......++..+++.+...+.+..+|...|.+.+.+.++.
T Consensus       102 ~-~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~  180 (406)
T PRK15402        102 E-QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALS  180 (406)
T ss_pred             H-HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            1 111111111111111234456777899999999988888777777777777777666666678888888777777666


Q ss_pred             HHHHHhhcccCCC
Q 020863          277 VVFVILFVPETQG  289 (320)
Q Consensus       277 ~~~~~~~~pet~g  289 (320)
                      .+..++..||+++
T Consensus       181 ~~~~~~~~~~~~~  193 (406)
T PRK15402        181 FFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHhCCCCCc
Confidence            6655667788754

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.32  E-value=1.4e-10  Score=106.60  Aligned_cols=160  Identities=11%  Similarity=0.074  Sum_probs=97.0

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      +....+.|.+.++.|.+..+.... .........++.+++|+++||+|||+.+..+.....++.+.....  .  +    
T Consensus        53 ~~~~~~~~~l~~~~gls~~~~g~~-~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~--s----  123 (476)
T PLN00028         53 FAAAPLLPIIRDNLNLTKSDIGNA-GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--S--S----  123 (476)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--c--C----
Confidence            334455677888889876655443 344455567889999999999999998776554444433322211  1  1    


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---------Hhcch
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---------LVGTG  263 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~---------~~g~~  263 (320)
                       .  ....+. .+...+...+. .....+.+|.+|++.|+++.|+.+..+.+++.+++.+.+.+..         ..||.
T Consensus       124 -~--~~l~~~-r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr  198 (476)
T PLN00028        124 -A--TGFIAV-RFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR  198 (476)
T ss_pred             -H--HHHHHH-HHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence             0  111111 11111111111 2233467899999999999999888777777777665554432         13688


Q ss_pred             hHHHHHHHHHHHHHHHHHhhccc
Q 020863          264 ATFLILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~pe  286 (320)
                      ..|.+.+++.++..+..+++.++
T Consensus       199 ~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        199 IAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCc
Confidence            88888777776665555444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.31  E-value=4.6e-11  Score=107.54  Aligned_cols=161  Identities=19%  Similarity=0.135  Sum_probs=101.9

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .....|.+.++.+.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.+.....    .     . 
T Consensus        34 ~~~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~-----~-  102 (406)
T PRK11551         34 AGVAAPRMAQEFGLDVAQMGWAFS-AGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA----W-----D-  102 (406)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----c-----c-
Confidence            344567888888887665554444 4455578899999999999999998877655444433322211    1     1 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      + +..++.. +..........+....+.+|.+|++.|+++.|+.+....++..+++.....+.+..+|...|++.+.+.+
T Consensus       103 ~-~~~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (406)
T PRK11551        103 F-PSLLVAR-LLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPL  180 (406)
T ss_pred             H-HHHHHHH-HHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence            1 1111111 1112222222344567888999999999999998887778877776655555555667777777666555


Q ss_pred             HHHHHHHhhcccCC
Q 020863          275 LAVVFVILFVPETQ  288 (320)
Q Consensus       275 ~~~~~~~~~~pet~  288 (320)
                      +..+....++||+.
T Consensus       181 ~~~~~~~~~l~~~~  194 (406)
T PRK11551        181 LLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHhCCCCh
Confidence            55555556678864

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.31  E-value=1.7e-10  Score=103.98  Aligned_cols=186  Identities=14%  Similarity=0.157  Sum_probs=105.2

Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL  164 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~  164 (320)
                      .+.+|+|+.|...+..     +..+.++....++.|++.++.- +... .........+.+.+..+++|+++||+|+|++
T Consensus       246 ~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~~~-~~~~-~l~~~~l~~l~~~l~rplgG~LADRiG~~~v  318 (462)
T PRK15034        246 LPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKTQF-PDVN-ILRLAFFGPFIGAIARSVGGAISDKFGGVRV  318 (462)
T ss_pred             HHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHc-ChHH-HHHHHHHHHHHHHHHHHhhHHHHHhcCchHH
Confidence            3467777777654442     2223333344557777766522 2211 2222333344467788999999999999998


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccc-cchhcccccCCc------c--------
Q 020863          165 ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP-VPWTLNSEVYPE------Q--------  229 (320)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ElfP~------~--------  229 (320)
                      +..+.....++..++....  ....   ....+....  .++..+...|.+. ..+-+++..||+      +        
T Consensus       319 l~~~~i~~~i~~~~~~l~l--p~~~---~~~~~~~~~--~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~  391 (462)
T PRK15034        319 TLINFIFMAIFSALLFLTL--PGTG---SGNFIAFYA--VFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ  391 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHh--cccc---ccHHHHHHH--HHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence            8776665555544333222  1110   011111122  2222333334432 345677888885      1        


Q ss_pred             -------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhc
Q 020863          230 -------YRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFV  284 (320)
Q Consensus       230 -------~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
                             .-|.+.|+....+..|+++.|..+....+..| +...|..+.+..+++.++.+.+.
T Consensus       392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence                   34556777778888888777777776666655 55567777777777766665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.31  E-value=1.6e-10  Score=103.82  Aligned_cols=159  Identities=23%  Similarity=0.175  Sum_probs=94.5

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW  197 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (320)
                      +.+.+..+.+.+..  ... .....+..+++.++.+++.||+|||+....+.....++...+..  .  .     ..  +
T Consensus       238 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--~--~-----~~--~  303 (399)
T PRK05122        238 FITLYYAARGWDGA--ALA-LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL--A--P-----SP--W  303 (399)
T ss_pred             HHHHHHHHcccccc--hHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--h--c-----cH--H
Confidence            44555555554321  222 22344456788899999999999998776555444443332221  1  1     11  1


Q ss_pred             HHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          198 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                      ..+....+.....+ ...+.......|.+|++.|+++.|+.+....++..+++.+...+.+..|+...+.+.+++.+++.
T Consensus       304 ~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  382 (399)
T PRK05122        304 MALIGAALTGFGFS-LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGL  382 (399)
T ss_pred             HHHHHHHHHHHhHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            11111111111111 12233334556889999999999999988888888888877777777888888887777777666


Q ss_pred             HHHHhhcccCCCCCH
Q 020863          278 VFVILFVPETQGLTF  292 (320)
Q Consensus       278 ~~~~~~~pet~g~~~  292 (320)
                      +... ++++.++++.
T Consensus       383 ~~~~-~~~~~~~~~~  396 (399)
T PRK05122        383 ALTW-LLYRRAPRAV  396 (399)
T ss_pred             HHHH-HhcccccccC
Confidence            5543 4555544433

>PRK10054 putative transporter; Provisional

Probab=99.31  E-value=9.5e-11  Score=105.17  Aligned_cols=159  Identities=12%  Similarity=0.127  Sum_probs=100.8

Q ss_pred             eeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          116 MYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       116 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      ..+.|.++ ++.|.+..+.+...+.. .....++.++.|+++||+|||+.+..+.....++...+.+.  .       ..
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~~~s~~-~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~-------~~   96 (395)
T PRK10054         27 LPFMTIYLSRQYSLSVDLIGYAMTIA-LTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--N-------NV   96 (395)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--h-------HH
Confidence            33445444 56788766655554443 44467888999999999999998776665544443332221  1       00


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                        +..+++..+..... ....+....+.+|.+|++.|+++.|+.....+++..+++.+...+.. .++..+|.+.+.+.+
T Consensus        97 --~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~  172 (395)
T PRK10054         97 --TLVVLFFALINCAY-SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA  172 (395)
T ss_pred             --HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence              11122221211111 12234456778899999999999999999999998888777665553 577778887776666


Q ss_pred             HHHHHHHhhcccCC
Q 020863          275 LAVVFVILFVPETQ  288 (320)
Q Consensus       275 ~~~~~~~~~~pet~  288 (320)
                      +..+...+++||++
T Consensus       173 i~~i~~~~~~~~~~  186 (395)
T PRK10054        173 FPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHhccc
Confidence            66555556666654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.30  E-value=4.7e-10  Score=103.26  Aligned_cols=160  Identities=18%  Similarity=0.110  Sum_probs=92.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 020863          127 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY  206 (320)
Q Consensus       127 g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (320)
                      +.+....+. ......+..+++.++.|+++||+|||+.+..+.....++........................++...++
T Consensus        51 ~~~~~~~~~-~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         51 SAANSLLGF-CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             cCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            444333333 3344455578999999999999999998877666554444333221000000000011111222333334


Q ss_pred             HHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHhcchhHHHHHHHHHHHHHH
Q 020863          207 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA--------ELVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       207 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~  278 (320)
                      ......+..+....+.+|.+|++.|+++.|+......++..+++.+...+.        ...||...|.+.+...++..+
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~  209 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM  209 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH
Confidence            444444445666788999999999999999877766666665543322211        234677788776655555443


Q ss_pred             HHHhhcccCC
Q 020863          279 FVILFVPETQ  288 (320)
Q Consensus       279 ~~~~~~pet~  288 (320)
                       ..+++||+.
T Consensus       210 -~~~~l~~s~  218 (479)
T PRK10077        210 -LLYFVPETP  218 (479)
T ss_pred             -HHHcCCCCc
Confidence             456789875

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.30  E-value=1.9e-10  Score=105.07  Aligned_cols=163  Identities=14%  Similarity=0.104  Sum_probs=94.8

Q ss_pred             eeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          116 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      .+..|.+.++ +.+..+.+.. .....+...++.+++|+++||+|||+++..+.....++.+.....  ....   ... 
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~-~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~--~~~~---~~~-  120 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFA-LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV--PWAT---SSI-  120 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHH-HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhh--hccc---ccH-
Confidence            3456776666 7776555444 344555578899999999999999998876665554444333221  1000   011 


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHhcchhHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF-LTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~  274 (320)
                       +..+....+...+.+ ...+.......|.+|++.|+++.|+.+....+++.+.+.+. .......||...|++.+.+.+
T Consensus       121 -~~~~~~~~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~  198 (452)
T PRK11273        121 -AVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAI  198 (452)
T ss_pred             -HHHHHHHHHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             111111111112211 22233335667999999999999987777766654333322 222233477778887777666


Q ss_pred             HHHHHHHhhcccCC
Q 020863          275 LAVVFVILFVPETQ  288 (320)
Q Consensus       275 ~~~~~~~~~~pet~  288 (320)
                      +..++..+++||+.
T Consensus       199 ~~~~l~~~~~~~~~  212 (452)
T PRK11273        199 LVALFAFAMMRDTP  212 (452)
T ss_pred             HHHHHHHHHccCCH
Confidence            66566667777764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.30  E-value=2.8e-10  Score=105.43  Aligned_cols=145  Identities=20%  Similarity=0.113  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcccc
Q 020863          136 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG  215 (320)
Q Consensus       136 ~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (320)
                      .......+..+++.++.|+++||+|||+.+..+.....++.+.....  . ..   ........++...+...+...+..
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~-~~---~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--P-GS---SPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--c-Cc---ccchHHHHHHHHHHHHHHHHhhhh
Confidence            34445556678999999999999999998876655555544433221  1 10   010011122222223333333345


Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhcchhHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-----------------------LVGTGATFLILAGI  272 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~~~~~~~~~~  272 (320)
                      +....+.+|.+|++.|+++.++......++..+++.+...+..                       ..+|...+.+.+..
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip  213 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP  213 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence            6667899999999999999999888888877776655443321                       12466666544443


Q ss_pred             HHHHHHHHHhhcccC
Q 020863          273 AVLAVVFVILFVPET  287 (320)
Q Consensus       273 ~~~~~~~~~~~~pet  287 (320)
                      .++ .++..+++||+
T Consensus       214 ~~i-~~~~~~~lpES  227 (502)
T TIGR00887       214 ALL-ALYFRLTIPET  227 (502)
T ss_pred             HHH-HHHHHHhCCCC
Confidence            333 33445778998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00897 2A0118 polyol permease family

Probab=99.29  E-value=6.2e-10  Score=100.15  Aligned_cols=181  Identities=15%  Similarity=0.131  Sum_probs=103.4

Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           86 DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        86 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      +++++|+.+...+...     .+..+.+....+.|.++++.|.+..+...... .....+.++.++.|+++||+|||+..
T Consensus       217 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~-~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       217 ILFTNPNVLLGGMVRI-----INTIGLFGFAVFLPMFVAELGFSTSEWLQIWG-TFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHcChhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            4566776654433211     11122333445678888888887655443333 34455789999999999999988865


Q ss_pred             H-HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH
Q 020863          166 L-SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI  244 (320)
Q Consensus       166 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~  244 (320)
                      . .+.....++...+........    +..  +...+...+..... .+..+. ....+|..| +.|+++.|+.+....+
T Consensus       291 ~~~~~l~~~~~~~~l~~~~~~~~----~~~--~~~~~~~~~~G~~~-~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~l  361 (402)
T TIGR00897       291 RWFGGVGCGIFTLALYYIPQHFG----HSF--AVALIIAIALGIFL-AGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGL  361 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC----CcH--HHHHHHHHHHHHHH-HHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHH
Confidence            3 222222222222111111000    011  11111111111111 112222 234567766 5799999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 020863          245 SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVI  281 (320)
Q Consensus       245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  281 (320)
                      ++.+++.+...+.+..|+...+.+.+++.+++.+...
T Consensus       362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888888877788877777666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.28  E-value=9e-11  Score=104.10  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=103.9

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.+.+..+.+...+ .......++.+..|+++||+|||++..........+..    ......     .   
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s-~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~----~~~~~~-----~---   78 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAI-TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG----RLLDPF-----N---   78 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH----HHHHhc-----c---
Confidence            4568888899987766555444 44445778899999999999999876543322222111    111101     0   


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      ...++...+... .+.+.........+|.+|++.|+++.|+......++..+++.....+.+..||...|.+.+.+.++.
T Consensus        79 ~~~l~~~R~l~G-~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~  157 (368)
T TIGR00903        79 YEWLLACQLLAA-LGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHHH-hHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            111222222111 1122223334555899999999999999999888999988887777777789998988878877777


Q ss_pred             HHHHHhhcccCC
Q 020863          277 VVFVILFVPETQ  288 (320)
Q Consensus       277 ~~~~~~~~pet~  288 (320)
                      .++.++++||+.
T Consensus       158 ~~~~~~~lp~~p  169 (368)
T TIGR00903       158 IILVLAALPALP  169 (368)
T ss_pred             HHHHHHHcCCCC
Confidence            777777888864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.28  E-value=2.9e-11  Score=111.42  Aligned_cols=165  Identities=19%  Similarity=0.189  Sum_probs=111.2

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      .......|.+.++.|.+..+.++.. ........++.++.|+++||+|||+.+..+.....++.......    +     
T Consensus        19 ~~~~~~~p~~~~~~g~s~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~-----   88 (485)
T TIGR00711        19 TIVNVAIPTIAGDLGSSLSQVQWVI-TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA----P-----   88 (485)
T ss_pred             HHHHHHHHHHHHhcCCChhhhhHHH-HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc----C-----
Confidence            3344567888888888766655544 44555678999999999999999998876665554444332211    1     


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGI  272 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  272 (320)
                      .   ...++...+..........+....+..|.+|++.|+++.|+......++..+++.+...+.+..+|.+.|++.+.+
T Consensus        89 ~---~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~  165 (485)
T TIGR00711        89 N---LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPI  165 (485)
T ss_pred             C---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHH
Confidence            1   1112222222333333344556788899999999999999988888888888887777777777888888877666


Q ss_pred             HHHHHHHHHhhcccCCCC
Q 020863          273 AVLAVVFVILFVPETQGL  290 (320)
Q Consensus       273 ~~~~~~~~~~~~pet~g~  290 (320)
                      .++..++..++.||++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~  183 (485)
T TIGR00711       166 GIIVVVVAFFILPRDKPA  183 (485)
T ss_pred             HHHHHHHHHHHcCCcccc
Confidence            666666666667775443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=2.9e-11  Score=107.29  Aligned_cols=161  Identities=16%  Similarity=0.187  Sum_probs=105.9

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .....|.+.++.|.+..+.+...+ ...+...++.++.|+++||+|||+.+..+.....++.+......         . 
T Consensus        14 ~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~-   82 (379)
T TIGR00881        14 FALAMPYLVEEIGLSKTDLGLLLS-SFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST---------S-   82 (379)
T ss_pred             hhhhhHHHHHHhCCCHhHHHHHHH-HHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh---------h-
Confidence            344567888888887766554444 44555788999999999999999988777665555544433221         0 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ-TFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                      . + .+....+..........+....+.+|.+|++.|+++.|+......++..+++. ....+....++...|.+.+.+.
T Consensus        83 ~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        83 L-W-VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             H-H-HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            0 1 11222222222233334566778899999999999999888888888888773 4344445567777777777666


Q ss_pred             HHHHHHHHhhcccCC
Q 020863          274 VLAVVFVILFVPETQ  288 (320)
Q Consensus       274 ~~~~~~~~~~~pet~  288 (320)
                      ++..+..+++.||++
T Consensus       161 ~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       161 IIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHheeeCCCc
Confidence            666565666677654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.25  E-value=9.2e-11  Score=103.71  Aligned_cols=125  Identities=10%  Similarity=0.037  Sum_probs=67.9

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .+.|.++++.|.+..+.............+++.+++++++||+|||+.+..+.....+......+...............
T Consensus       230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (356)
T TIGR00901       230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL  309 (356)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            44566666677765554443433333446789999999999999988876555444443332222110100000000001


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      +....+..+ ..+......+....+..|.+|++.|++..|+.+...
T Consensus       310 ~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       310 LMLFLTITL-EAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHH-HHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            111222211 112222234555688899999999999999876644

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.25  E-value=1.1e-09  Score=97.79  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             eehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      .+.|.+++ ..+.+...... ......+...++.++.+++.||+|||+....+.....++...+........    ..  
T Consensus       227 ~~~~~~~~~~~g~~~~~~g~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--  299 (385)
T TIGR00710       227 SGAPFVYIDIMGVSPSVFGL-LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL----GS--  299 (385)
T ss_pred             HcChHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc----ch--
Confidence            34565554 56766544433 344455567889999999999999998876654444444333322211110    00  


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL  254 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~  254 (320)
                       .........+.........+....+..|.+| +.|+++.++.+.....++.+.+....
T Consensus       300 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       300 -WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111111111111112223444566678887 46888999888777665555555444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.25  E-value=1.6e-10  Score=106.71  Aligned_cols=164  Identities=18%  Similarity=0.123  Sum_probs=108.6

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ..+..-.|.+.++++.+..+..+..+. ......++.+..|+++||+|||+.+..+.....++.+.....    +     
T Consensus        23 tiv~~a~p~i~~~l~~s~~~~~~~~~~-~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a----~-----   92 (495)
T PRK14995         23 TVLHVAAPTLSMTLGASGNELLWIIDI-YSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS----P-----   92 (495)
T ss_pred             HHHHHHHHHHHHHhCCCHhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc----C-----
Confidence            334455788888888876666555544 444466778899999999999999887766555554443221    1     


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG  271 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  271 (320)
                      ..  + .++....+......+..+.......+.+ |++.|+++.|+......++..+++.+-..+.+..||.+.|++...
T Consensus        93 ~~--~-~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~  169 (495)
T PRK14995         93 TA--S-WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVP  169 (495)
T ss_pred             CH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Confidence            11  1 1122222222222222333334444554 778999999999999999999998888888888889989888777


Q ss_pred             HHHHHHHHHHhhcccCCC
Q 020863          272 IAVLAVVFVILFVPETQG  289 (320)
Q Consensus       272 ~~~~~~~~~~~~~pet~g  289 (320)
                      +.++..++..+++||.++
T Consensus       170 ~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        170 IVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHhCCCCCC
Confidence            766666666677787543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.25  E-value=3.8e-10  Score=102.76  Aligned_cols=155  Identities=15%  Similarity=0.080  Sum_probs=99.1

Q ss_pred             CcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 020863          111 GINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSS  188 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~-grR~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      +++.+..++|.++++ .|.+..+... ......+...++.+++|+++||+ |||+.+..+.....++...+..  ..  .
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~~~a~~-i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~--~~--~   98 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDDNHAYE-LFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGA--SE--I   98 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH--hh--c
Confidence            445555667776654 5776554433 34444455678899999999998 9999887776665555433221  00  0


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccc-cccchhcccccCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 020863          189 ASSSGVYGWIAVIGLALYIAFFAPGM-GPVPWTLNSEVYPEQ--YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGAT  265 (320)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ElfP~~--~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~  265 (320)
                         ...  . ...+..+..  .+.|. .+....+.+|+||++  .|.++.++....+++++.+++.+.+.+.+..||+..
T Consensus        99 ---~~~--~-~~l~l~li~--iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~  170 (493)
T PRK15462         99 ---HPS--F-LYLSLAIIV--CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMG  170 (493)
T ss_pred             ---chh--H-HHHHHHHHH--HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Confidence               000  1 111111111  11222 233457889999986  799999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHH
Q 020863          266 FLILAGIAVLAVV  278 (320)
Q Consensus       266 ~~~~~~~~~~~~~  278 (320)
                      |.+.+..++++.+
T Consensus       171 F~iaaigm~l~li  183 (493)
T PRK15462        171 FGLAAVGMIAGLV  183 (493)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776554444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.25  E-value=3.1e-10  Score=102.87  Aligned_cols=145  Identities=22%  Similarity=0.189  Sum_probs=94.7

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ....+..|.+.++.+.+..+.....+ ...+...++.++.|+++||+|||+.+..+.....++........         
T Consensus        35 ~~~~~~~~~i~~~~~~s~~~~~~~~~-~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------  104 (426)
T PRK12307         35 MLIFYIMYLIKADLGLTDMEGAFLAT-AAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS---------  104 (426)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh---------
Confidence            33445567777888887665544443 44555788999999999999999998877666555544433221         


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                      .   ...+....+.......+..+....+..|.+|++.|+++.|+......++..+++.+.+.+.+..+|...|.+.+
T Consensus       105 ~---~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~  179 (426)
T PRK12307        105 G---VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL  179 (426)
T ss_pred             H---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence            0   11111122222222223344556778899999999999999888777888887777666666677877776543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.25  E-value=1e-09  Score=98.84  Aligned_cols=160  Identities=24%  Similarity=0.226  Sum_probs=101.3

Q ss_pred             eeeehHHHHHHhCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          115 VMYYSPTIVQMAGFQSNQL----ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      ...+.|.+.++.|.+..+.    .............++.++.|+++||+|||+.+..+.....++.......    .   
T Consensus        33 ~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~---  105 (408)
T PRK09874         33 VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA----Q---  105 (408)
T ss_pred             hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH----h---
Confidence            3446778888888765432    1223334444567888999999999999998876655444443332211    0   


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                        . + +..++...+.. . ..+..+....+..|.+|++.|+++.|+......++..+++.+...+.+..++...|.+.+
T Consensus       106 --~-~-~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  179 (408)
T PRK09874        106 --N-I-WQFLILRALLG-L-LGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA  179 (408)
T ss_pred             --h-H-HHHHHHHHHHH-H-hhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence              0 1 11111111111 1 112334444567789999999999999888888888888877777777778888888777


Q ss_pred             HHHHHHHHHHHhhcccC
Q 020863          271 GIAVLAVVFVILFVPET  287 (320)
Q Consensus       271 ~~~~~~~~~~~~~~pet  287 (320)
                      .+.++..+...++.||.
T Consensus       180 ~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        180 SVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            77666666566666665

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.24  E-value=1.9e-10  Score=104.70  Aligned_cols=162  Identities=17%  Similarity=0.100  Sum_probs=97.4

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      +..|.+.+ .|.+..+.+... ........++.++.|+++||+|||+.+..+.....++.......  .  .. ... . 
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~-~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~~-~-  118 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFAL-SAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFV--P--WA-TSS-I-  118 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHH-HHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcc--c--cc-cch-H-
Confidence            44565554 577766554443 34455578899999999999999997776554444443332211  0  00 001 1 


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-ELVGTGATFLILAGIAVL  275 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  275 (320)
                      ....+...+.....+ ...+.......|.+|++.|+++.|+.+....+++.+++.+..... ...+|...|++.+.+.++
T Consensus       119 ~~l~~~~~l~g~~~g-~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i  197 (438)
T TIGR00712       119 AIMFVLLFLNGWFQG-MGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII  197 (438)
T ss_pred             HHHHHHHHHHHHHhh-cchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            111111111111111 122333456679999999999999988888888777766554433 345788888887777776


Q ss_pred             HHHHHHhhcccCC
Q 020863          276 AVVFVILFVPETQ  288 (320)
Q Consensus       276 ~~~~~~~~~pet~  288 (320)
                      ..+..++++||+.
T Consensus       198 ~~~~~~~~~~~~~  210 (438)
T TIGR00712       198 VALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHHhccCCH
Confidence            6666667777753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=99.24  E-value=4.5e-10  Score=103.22  Aligned_cols=164  Identities=12%  Similarity=0.110  Sum_probs=107.2

Q ss_pred             CcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          111 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      .........|.+.++.|.+..+.++.. ........++.++.|+++||+|||+....+.....++.....  ..  +   
T Consensus        25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~~--~---   96 (471)
T PRK10504         25 DTTIVNTALPSMAQSLGESPLHMHMVI-VSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA--LS--G---   96 (471)
T ss_pred             hHHHHHHHHHHHHHHhCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH--Hh--C---
Confidence            333445567889999998766544443 344555678899999999999999987766544444333221  11  1   


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                        ..  + .++...++.........+....+..|.+|++.|+++.|+......++..+++.+...+.+..||...|.+..
T Consensus        97 --~~--~-~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~  171 (471)
T PRK10504         97 --TL--N-ELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI  171 (471)
T ss_pred             --CH--H-HHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence              11  1 111112222222222344556778899999999999999888888888888887777777778888888776


Q ss_pred             HHHHHHHHHHHhhcccC
Q 020863          271 GIAVLAVVFVILFVPET  287 (320)
Q Consensus       271 ~~~~~~~~~~~~~~pet  287 (320)
                      ....++.+......|+.
T Consensus       172 ~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        172 PVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            66666666555666654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.24  E-value=1.4e-09  Score=100.56  Aligned_cols=157  Identities=14%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK  163 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~  163 (320)
                      .++|+++..+...+.....     ........++.|.+++. .|.+..+ +.....+......++.+++|+++||+|||+
T Consensus       253 ~~lf~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lq~v~g~s~~~-ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~  326 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTA-----MITLVGFELLMAQELQFVHGLSPLE-AGMFMLPVMVASGFSGPIAGILVSRLGLRL  326 (495)
T ss_pred             HHHhCCcccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            4677777665443332211     11222333566766665 5665544 455556666777889999999999999998


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHH
Q 020863          164 LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW  243 (320)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~  243 (320)
                      ....+.....++...+..  .....   +.   +.......+.....+. ..+.......+..|++.++.+.++.+....
T Consensus       327 ~~~~g~~~~~~~~~~l~~--~~~~~---~~---~~~~~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  397 (495)
T PRK14995        327 VATGGMALSALSFYGLAM--TDFST---QQ---WQAWGLMALLGFSAAS-ALLASTSAIMAAAPPEKAAAAGAIETMAYE  397 (495)
T ss_pred             HHHHHHHHHHHHHHHHHH--hcCCC---ch---HHHHHHHHHHHHhHHH-HHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence            876655544444333221  11111   11   1111111111111111 122233455677899999999999888877


Q ss_pred             HHHHHHHHHHHHH
Q 020863          244 ISNLIVAQTFLTV  256 (320)
Q Consensus       244 ~~~~~~~~~~~~~  256 (320)
                      +++.+++.+...+
T Consensus       398 lG~~~G~ai~g~i  410 (495)
T PRK14995        398 LGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777665544443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.24  E-value=1.5e-09  Score=97.71  Aligned_cols=207  Identities=21%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             CchHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|++.++..++.++. +..+||+++..   ++ ++..                +        +.    ..+.+++
T Consensus       164 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~----------------~--------~~----~~~~~~~  211 (406)
T PRK15402        164 LPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-KLSL----------------K--------EL----GRDYKLV  211 (406)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-cccH----------------H--------HH----HHHHHHH
Confidence            47999999988887766554 45678875321   00 0000                0        00    0012345


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL  166 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~  166 (320)
                      +++|+.+...+.. .+....    ......+.|.++ +..+.+....... .........++.++.++++||+++|+...
T Consensus       212 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~p~~~~~~~g~~~~~~g~~-~~~~~~~~~~g~~~~g~l~~r~~~~~~~~  285 (406)
T PRK15402        212 LKNRRFVAGALAL-GLVSLP----LLAWIALSPVILISGEQLSSYEYGLL-QVPVFGALIAGNLTLARLTSRRPLRSLIR  285 (406)
T ss_pred             HcCcHHHHHHHHH-HHHHHH----HHHHHHHhHHHHHHHhCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            6666655433321 111111    111122345554 4567664443332 33334456788899999999999999876


Q ss_pred             HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHH
Q 020863          167 SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN  246 (320)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~  246 (320)
                      .+.....++...+....... .   .. ..+ ......++....... .+...... ...+++.|++..++.+....++.
T Consensus       286 ~~~~~~~~g~~~~~~~~~~~-~---~~-~~~-~~~~~~~~g~g~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~  357 (406)
T PRK15402        286 MGLWPMVAGLLLAALATVIS-S---HA-YLW-LTAGLSLYAFGIGLA-NAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIF  357 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-c---cc-HHH-HHHHHHHHHHHHHHH-hhhHHHHH-hhhccccccHHHHHHHHHHHHHH
Confidence            65544444443332221111 0   01 111 111122221111111 12222222 22244789999999988888888


Q ss_pred             HHHHHHHHHHHHHhc
Q 020863          247 LIVAQTFLTVAELVG  261 (320)
Q Consensus       247 ~~~~~~~~~~~~~~g  261 (320)
                      .+++.+...+.+..+
T Consensus       358 ~~g~~~~~~l~~~~~  372 (406)
T PRK15402        358 TVGIELSKHAYLGGG  372 (406)
T ss_pred             HHHHHHHHhcccCCc
Confidence            888776666555444

>PRK03699 putative transporter; Provisional

Probab=99.23  E-value=3.3e-10  Score=101.66  Aligned_cols=158  Identities=13%  Similarity=0.160  Sum_probs=92.5

Q ss_pred             eeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          115 VMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       115 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ...|.|.+++ ..|.+..+...... .......++.+++++++||++||+.+........+....+    ...++    .
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~-~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~----~~~~~----~  294 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVS-NFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF----VNTDD----P  294 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHH-HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH----HHcCC----c
Confidence            3456777775 55776555444333 3344578999999999999999988765443333222111    11111    1


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                      .  +.... ... ..+...+..+....+..|..|.+ +++..|.....+.+++.+++.+...+.+..|+...++..+++.
T Consensus       295 ~--~~~~~-~~~-~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~  369 (394)
T PRK03699        295 S--HLLYA-ILG-LGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLY  369 (394)
T ss_pred             h--HHHHH-HHH-HHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHH
Confidence            0  11111 111 11112223344445566776644 5667788888888999999999888888888777777666665


Q ss_pred             HHHHHHHHhhcccC
Q 020863          274 VLAVVFVILFVPET  287 (320)
Q Consensus       274 ~~~~~~~~~~~pet  287 (320)
                      .++.+. ....+++
T Consensus       370 ~~~~~~-~~~~~~~  382 (394)
T PRK03699        370 AVVFVM-CILLGFV  382 (394)
T ss_pred             HHHHHH-HHHHHHH
Confidence            555443 3444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.23  E-value=2.7e-10  Score=101.47  Aligned_cols=159  Identities=22%  Similarity=0.178  Sum_probs=107.2

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.......  .       . . 
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~-------~-~-   79 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLS-AYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--Q-------T-I-   79 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--c-------c-H-
Confidence            4567788888887665554443 4445578899999999999999998877665555554443321  1       0 0 


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      +...+. .+..........+....+.+|.+|++.|++..|+......++..+++.+...+.+..++...|.+.+.+.++.
T Consensus        80 ~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (377)
T PRK11102         80 DQLIYM-RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            111111 1122222222234445788899999999999999988888888888887777777778888888777777766


Q ss_pred             HHHHHhhcccCC
Q 020863          277 VVFVILFVPETQ  288 (320)
Q Consensus       277 ~~~~~~~~pet~  288 (320)
                      .+...++.||++
T Consensus       159 ~~~~~~~~~~~~  170 (377)
T PRK11102        159 AALVFFFIPETL  170 (377)
T ss_pred             HHHHHHhCCccC
Confidence            666666778764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.23  E-value=5.7e-10  Score=100.44  Aligned_cols=131  Identities=18%  Similarity=0.114  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhc
Q 020863          142 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL  221 (320)
Q Consensus       142 ~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (320)
                      .+...++.+..|+++||+|||+.+..+.....+..+...  ..  +.    .   +...+...+. ........+....+
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~--~~----~---~~~~~~~~~~-g~~~~~~~~~~~~~  335 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS--FV--QT----P---LQLGILRFLL-GAADGALLPAVQTL  335 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH--Hh--cc----H---HHHHHHHHHH-HhhhHhhHHHHHHH
Confidence            344567777889999999999987765544333332211  11  10    0   1111111111 11111122333345


Q ss_pred             ccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhc
Q 020863          222 NSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFV  284 (320)
Q Consensus       222 ~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
                      ..+..|.+.|++..|+.+....++..+++.+...+.+..|+...|.+.+++.+++.++.++..
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999998888899989888888777777888888888877777766554433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.22  E-value=4.7e-10  Score=102.71  Aligned_cols=148  Identities=18%  Similarity=0.136  Sum_probs=88.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHH
Q 020863          130 SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAF  209 (320)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (320)
                      ..+.+. ..........++.++.|+++||+|||+.+..+.....++.......  .. .    ..+ +. ++...++...
T Consensus        70 ~~~~~~-~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~-~----~~~-~~-~~~~r~l~G~  139 (481)
T TIGR00879        70 SSLWGL-VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AF-A----LSV-EM-LIVGRVLLGI  139 (481)
T ss_pred             hhHHHH-HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--cc-c----cch-HH-HHHHHHHHHh
Confidence            344433 3444555578999999999999999998876665554444333211  11 0    000 11 1112222222


Q ss_pred             HhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHhcchhHHHHHHHHHHHHHHHHHhhccc
Q 020863          210 FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF---LTVAELVGTGATFLILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       210 ~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pe  286 (320)
                      ......+....+.+|.+|++.|+++.|+......++..+++.+.   .......+|...|.+.+...++. ++..+++||
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~  218 (481)
T TIGR00879       140 GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPE  218 (481)
T ss_pred             hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence            22233455567889999999999999998888888887776655   22223456777777744444433 344567788


Q ss_pred             CC
Q 020863          287 TQ  288 (320)
Q Consensus       287 t~  288 (320)
                      +.
T Consensus       219 ~~  220 (481)
T TIGR00879       219 SP  220 (481)
T ss_pred             Ch
Confidence            63

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.22  E-value=1e-09  Score=98.43  Aligned_cols=160  Identities=15%  Similarity=0.127  Sum_probs=98.8

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW  197 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (320)
                      ..|.+.++.+.+..+.....+ .......++.++.|+++||+|||+.+..+.....++.......    .     . + +
T Consensus        30 ~~~~i~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----~-----~-~-~   97 (394)
T PRK11652         30 AIADMARDLNVREGAVQAVMA-AYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----H-----S-L-T   97 (394)
T ss_pred             cHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----c-----c-H-H
Confidence            357788888888766555444 4455578889999999999999998876655544444332211    1     0 0 1


Q ss_pred             HHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          198 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                       .+....++.........+....+..|.+|.+.|+...+..+....++..+++.+...+.+..||...|.+.+.+.++..
T Consensus        98 -~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652         98 -VLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             -HHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence             1111111111111111234445677889988888888877666666666776666666666788888877666655555


Q ss_pred             HHHHhhcccCCCC
Q 020863          278 VFVILFVPETQGL  290 (320)
Q Consensus       278 ~~~~~~~pet~g~  290 (320)
                      +...++.||++..
T Consensus       177 ~~~~~~~~~~~~~  189 (394)
T PRK11652        177 FSMARWMPETRPA  189 (394)
T ss_pred             HHHHHhCCccCcc
Confidence            5455667886543

>PRK12382 putative transporter; Provisional

Probab=99.21  E-value=1.2e-09  Score=97.96  Aligned_cols=152  Identities=24%  Similarity=0.203  Sum_probs=95.1

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .+.|.++++.+.+..   ............++.++.|++.||+|||+....+.....++...+..    ..     ..  
T Consensus       237 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~----~~-----~~--  302 (392)
T PRK12382        237 TFVSLYFASKGWAMA---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL----AP-----TA--  302 (392)
T ss_pred             HHHHHHHHhcCCchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH----cc-----cH--
Confidence            344555566555321   22233344445778899999999999998776555444443332211    11     11  


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      +.......+.....+ ...+.......|.+|++.|+++.|+.+....+++.+++.....+.+..|+...|.+.+.+.+++
T Consensus       303 ~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~  381 (392)
T PRK12382        303 WVALAGAALTGAGCS-LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLG  381 (392)
T ss_pred             HHHHHHHHHHHHHHH-hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            111222222211111 1223334566788999999999999999999999999998888888888888888888777777


Q ss_pred             HHHHHhh
Q 020863          277 VVFVILF  283 (320)
Q Consensus       277 ~~~~~~~  283 (320)
                      .+..+++
T Consensus       382 ~~~~~~~  388 (392)
T PRK12382        382 IIVTILS  388 (392)
T ss_pred             HHHHHhh
Confidence            6655444

>PRK11043 putative transporter; Provisional

Probab=99.21  E-value=1.2e-09  Score=98.35  Aligned_cols=200  Identities=13%  Similarity=0.136  Sum_probs=104.8

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||+.|++.++..++..+...+++|+++-    .++++                                +..++++++
T Consensus       157 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------------------------------~~~~~~~~~  200 (401)
T PRK11043        157 FGWQAIFATLFAITLLLILPTLRLKPSKKA----RKQSQ--------------------------------DALTFKQLL  200 (401)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cccch--------------------------------HHHHHHHHH
Confidence            479999999988888776666666665421    00000                                001233455


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      ++++.+...+......     ..+.....+.|.+.++.|.+....+ ...........++.++++++.||+|+|+.....
T Consensus       201 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~  274 (401)
T PRK11043        201 KSKTYLGNVLIFAACS-----AAFFAWLTGSPFILEQMGYSPADIG-LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWL  274 (401)
T ss_pred             cChhHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            5565544332211111     0111122345777777777654433 333444455678888899999999999866544


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHH
Q 020863          169 LAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~  248 (320)
                      .....++...+........    ...  +..++...+... ......+.......|..|. .|+++.|+.+..+..++..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~  346 (401)
T PRK11043        275 LVLFAVSVIAIWLASLLSH----PSL--VPLLIPFCVMAA-ANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFL  346 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcc----CcH--HHHHHHHHHHHH-HHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHH
Confidence            4433333332221111111    011  111111111111 1112233334455566664 6999999999888777777


Q ss_pred             HHHHHHHHHH
Q 020863          249 VAQTFLTVAE  258 (320)
Q Consensus       249 ~~~~~~~~~~  258 (320)
                      ++.....+.+
T Consensus       347 ~~~~~g~l~~  356 (401)
T PRK11043        347 ASLLVSALIS  356 (401)
T ss_pred             HHHHHHHccC
Confidence            7776665544

>PRK10504 putative transporter; Provisional

Probab=99.21  E-value=1.7e-09  Score=99.42  Aligned_cols=161  Identities=14%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             hhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 020863           86 DVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL  164 (320)
Q Consensus        86 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~  164 (320)
                      ++++++.++..+......     ..+.....++.|.+++. .|.+... ......+..+...++.++.+++.||+|||+.
T Consensus       256 ~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~  329 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVFLQIGLGFSPFH-AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV  329 (471)
T ss_pred             HHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            567777765543332211     11222333456777774 6665443 3344445555556667889999999999998


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH
Q 020863          165 ALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI  244 (320)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~  244 (320)
                      ...+.....+....+...  .  ..  ...  +............... ..+....+..+..|++.|+.+.|+.+....+
T Consensus       330 ~~~~~~~~~~~~~~~~~~--~--~~--~~~--~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  400 (471)
T PRK10504        330 LVATTLGLALVSLLFMLV--A--LL--GWY--YLLPFVLFLQGMVNST-RFSSMNTLTLKDLPDNLASSGNSLLSMIMQL  400 (471)
T ss_pred             HHHHHHHHHHHHHHHHhc--c--cc--ccH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHhccchHHHHHHHHHH
Confidence            776555444433322211  1  10  111  1111111111111111 1223346667889999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 020863          245 SNLIVAQTFLTVAELVG  261 (320)
Q Consensus       245 ~~~~~~~~~~~~~~~~g  261 (320)
                      +..+++.+...+.+..|
T Consensus       401 g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        401 SMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88888777766655444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.4e-09  Score=95.11  Aligned_cols=156  Identities=21%  Similarity=0.201  Sum_probs=117.4

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      -.+|.+-++.+.+.....+..+. +.....++.++...+.||+.||++++.......++.+...+...            
T Consensus        34 gLLp~iA~dl~vs~~~aG~lis~-yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~------------  100 (394)
T COG2814          34 GLLPPIAADLGVSEGAAGQLITA-YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS------------  100 (394)
T ss_pred             hchHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc------------
Confidence            45688999999987776665554 45557899999999999999999988777666666655443311            


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      +..+...-+..........++...+..++.|++.|+++.|+...-..+...++..+-..+.+..||..+|...+.+.++.
T Consensus       101 f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~  180 (394)
T COG2814         101 FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLA  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            11122222222222223345667888999999999999999998888888888888778889999999999999999988


Q ss_pred             HHHHHhhcc
Q 020863          277 VVFVILFVP  285 (320)
Q Consensus       277 ~~~~~~~~p  285 (320)
                      .+..+..+|
T Consensus       181 ~~~~~~~lP  189 (394)
T COG2814         181 LLLLWKLLP  189 (394)
T ss_pred             HHHHHHhCC
Confidence            888888899

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.20  E-value=7.4e-10  Score=98.96  Aligned_cols=159  Identities=14%  Similarity=0.084  Sum_probs=101.9

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.|.+....+...+ .......++.++.|+++||+|||+.+..+.....++.+.....    +     ..  
T Consensus        24 ~~l~~~~~~~g~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~----~-----~~--   91 (382)
T PRK10091         24 GVLTELAHDVGISIPAAGHMIS-YYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS----S-----SY--   91 (382)
T ss_pred             hChHHHHHHcCCCHHHHhHHHH-HHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh----C-----cH--
Confidence            3567788888887666554444 4455578999999999999999998877766555544433221    1     11  


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      +...+ ..++.........+....+..|.+|++.|+++.|+......++..+++.+-..+.+..+|...|.+.+.+.++.
T Consensus        92 ~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  170 (382)
T PRK10091         92 LMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV  170 (382)
T ss_pred             HHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence            11111 11111111111123334567899999999988888777777777777666555566678888888877766665


Q ss_pred             HHHHHhhcccCC
Q 020863          277 VVFVILFVPETQ  288 (320)
Q Consensus       277 ~~~~~~~~pet~  288 (320)
                      .+..++++||.+
T Consensus       171 ~~~~~~~lp~~~  182 (382)
T PRK10091        171 LASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHhCCCCC
Confidence            555566788864

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.20  E-value=9.6e-10  Score=98.57  Aligned_cols=131  Identities=19%  Similarity=0.313  Sum_probs=66.8

Q ss_pred             hHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 020863          119 SPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW  197 (320)
Q Consensus       119 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (320)
                      .|.+. ++.|.+....+. ......+...++.++.+++.||+|||+....+.....++...+......           .
T Consensus       226 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~  293 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAI-IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH-----------A  293 (392)
T ss_pred             CHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence            35444 456776544333 3344455577889999999999999998776655444443333221100           1


Q ss_pred             HHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 020863          198 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL  267 (320)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  267 (320)
                      .......+....+..+..   .....++.|.+.|+   |.......++..+++.+.+.+....|+.....
T Consensus       294 ~~~~~~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~  357 (392)
T PRK10473        294 VSLFGITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNM  357 (392)
T ss_pred             HHHHHHHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            111111111111111111   13334566666553   33334444555666666666666666544333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.20  E-value=8.3e-10  Score=97.51  Aligned_cols=155  Identities=15%  Similarity=0.105  Sum_probs=97.3

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+..+.+.+..+.+.. .........++.++.|+++||+|||+.+..+.....++............    .. . 
T Consensus        20 ~~~~~~~~~~~~s~~~~g~~-~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~-   92 (365)
T TIGR00900        20 VALPLYVLAGTGSASVLSLA-ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG----LN-I-   92 (365)
T ss_pred             HHHHHHHHHhhccHHHHHHH-HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC----Cc-H-
Confidence            34466677777765554443 33445557788999999999999999887665554444433332211110    01 1 


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      +....... ..........+....+.+|.+|++.|++..|+......++..+++.+...+.+..|+...|.+.+...++.
T Consensus        93 ~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  171 (365)
T TIGR00900        93 WQVYVLAG-ILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS  171 (365)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            11111111 11222222234556788999999999999999999999999888887777777778877777665555544


Q ss_pred             HHH
Q 020863          277 VVF  279 (320)
Q Consensus       277 ~~~  279 (320)
                      .+.
T Consensus       172 ~~~  174 (365)
T TIGR00900       172 ALL  174 (365)
T ss_pred             HHH
Confidence            443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=8.4e-10  Score=95.75  Aligned_cols=187  Identities=20%  Similarity=0.320  Sum_probs=112.8

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK  162 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR  162 (320)
                      .+.++++++.|...+.-     +..+-+.-....+.|.+++ +.+.+..+...+. ......+.+.-+++|+++||+|.|
T Consensus       211 ~~~v~~~~~~W~lsllY-----~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a-~~f~~~g~l~Rp~GG~LsDR~Gg~  284 (417)
T COG2223         211 LKAVFSNKDTWLLSLLY-----FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIA-FLFPLIGALARPLGGWLSDRIGGR  284 (417)
T ss_pred             HHHHhcCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHH-HHHHHHHHHHHhccchhhhhccch
Confidence            34456667666654442     2222233334456676655 5677665544433 333444677788999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      +........+.++...+.......    .+.......+..+.....+...|.+ ..+.+++..||.+ -+.+.|+...++
T Consensus       285 rv~~~~f~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~~-~G~v~G~vga~G  358 (417)
T COG2223         285 RVTLAVFVGMALAAALLSLFLTGF----GHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPKE-TGAVTGIVGAIG  358 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHcccccc----ccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHHhh-hhHHHHHHHHhc
Confidence            988777766666655544322111    0011111222222222223333333 4568888899876 455779988899


Q ss_pred             HHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHh
Q 020863          243 WISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVIL  282 (320)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  282 (320)
                      .++++..+..+....+.+| +...|.++..+.+++.+..+.
T Consensus       359 ~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         359 GLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             cccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888888888877 666777777777777665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.19  E-value=4e-10  Score=102.08  Aligned_cols=238  Identities=22%  Similarity=0.284  Sum_probs=134.4

Q ss_pred             CchHHHHhhhhHHHHHHHHHhh-cCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH-hccccchhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVLML-FMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELR-KKKTVRYLD   86 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~-~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   86 (320)
                      .+|+..|.+.++.+++..+++. +.-|+|.-...-.+                  +|.+.+.+.+.++.. ++.+.++++
T Consensus       192 ~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~------------------~El~~I~~~k~~~~~~~~~~vP~~~  253 (466)
T KOG2532|consen  192 LGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE------------------KELKYIEKGKSEAHVKKKPPVPYKA  253 (466)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH------------------HHHHHHHhcccccccCCCCCCCHHH
Confidence            5799999999999999887764 56677754221111                  122222222211111 113568999


Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL-  164 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~-  164 (320)
                      +++++..|...+..     +....+.+.+..|.|++++ .++++..+.++..+++.. .+.+..+++|.++||+-+|.+ 
T Consensus       254 i~ts~~vwai~~~~-----f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l-~~~~~k~~~g~lsD~l~~~~ls  327 (466)
T KOG2532|consen  254 ILTSPPVWAIWISA-----FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL-AMAIVKFVAGQLSDRLTFRILS  327 (466)
T ss_pred             HHcCHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhccCc
Confidence            99998877655542     2223344455567787776 567877777776666654 489999999999999866311 


Q ss_pred             -----HHHHhHHHHH-HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHH
Q 020863          165 -----ALSSLAGVII-SLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS  238 (320)
Q Consensus       165 -----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~  238 (320)
                           -....+.... +..++...+..    ..+.   +..++++.+...+  .|..........-..-++.-+...|+.
T Consensus       328 ~t~~rkifn~i~~~~~ai~l~~l~~~~----~~~~---~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~apq~a~~l~g~~  398 (466)
T KOG2532|consen  328 ETTVRKIFNTIAFGGPAVFLLVLAFTS----DEHR---LLAVILLTIAIGL--SGFNISGFYKNHQDIAPQHAGFVMGII  398 (466)
T ss_pred             hHhHHHHHHhHHHHHHHHHHHeeeecC----CCcc---hHHHHHHHHHHHH--cccchhhhHhhhhhccchHHHHHHHHH
Confidence                 1111111111 11111111111    1111   1222222221111  122222212222221456678889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHHHHH
Q 020863          239 ATVNWISNLIVAQTFLTVAE---LVGTGATFLILAGIAVLAVVF  279 (320)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~  279 (320)
                      +..+.+.+++++.+...+..   ...|...|++.+++.+++.++
T Consensus       399 ~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~  442 (466)
T KOG2532|consen  399 NFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII  442 (466)
T ss_pred             HHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence            99999999988887776653   235778888888888777653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.19  E-value=1.9e-09  Score=95.95  Aligned_cols=116  Identities=15%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             ehHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          118 YSPTI-VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       118 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      +.|.+ .+..|.+..+.+. ......+..+++.++.+++.||+|||+....+.....+....+...... ..    .  .
T Consensus       216 ~~~~~~~~~~g~s~~~~g~-~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~--~  287 (377)
T PRK11102        216 AGPFVYIELNGVSPQNFGY-YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-DL----G--F  287 (377)
T ss_pred             cCHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hh----h--H
Confidence            34444 4456776554433 3445555678889999999999999998776654433322222111100 00    0  0


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW  243 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~  243 (320)
                      +...++..++..... ........+..|..| +.|+++.++.+....
T Consensus       288 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  332 (377)
T PRK11102        288 WALVVGVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLRF  332 (377)
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHHH
Confidence            111222222222111 112222345567777 778888888766544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.19  E-value=2.2e-09  Score=95.98  Aligned_cols=154  Identities=14%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             hHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 020863          119 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI  198 (320)
Q Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (320)
                      .|.+.+..|.+....... .....+..+++.++.+++.||+|+|+....+.....++...+.. ...  .    .   +.
T Consensus       223 ~~~~~~~~g~s~~~~~~~-~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~-~~~--~----~---~~  291 (382)
T PRK10091        223 KPYMMFISGFSETSMTFI-MMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF-FGG--M----K---TA  291 (382)
T ss_pred             HHHHHHhcCCCHHHHHHH-HHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH-HHh--h----H---HH
Confidence            444545567765554443 34455567899999999999999998876555444333322211 111  0    0   11


Q ss_pred             HHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Q 020863          199 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAV  277 (320)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  277 (320)
                      .++...+..........+.......+..|.+.++.+  ..+....+++.+++.....+.+. .++...+.+.+.++++..
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~  369 (382)
T PRK10091        292 SLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM  369 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence            111111111111111111122334455555555443  34556678888888888877775 467677776665555555


Q ss_pred             HHHHhhcc
Q 020863          278 VFVILFVP  285 (320)
Q Consensus       278 ~~~~~~~p  285 (320)
                      .....+.+
T Consensus       370 ~~~~~~~~  377 (382)
T PRK10091        370 SSLLLYGR  377 (382)
T ss_pred             HHHHHHhh
Confidence            44444433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.18  E-value=2.4e-09  Score=93.88  Aligned_cols=155  Identities=27%  Similarity=0.351  Sum_probs=104.0

Q ss_pred             ceeeeehHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH-HHHHHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          113 NTVMYYSPTIVQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK-LALSSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       113 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      .....+.|.+.++. +.+..+ .............++.++.+++.||+|||+ ....+.....++.......  .     
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-----  263 (352)
T cd06174         192 YGLLTYLPLYLQEVLGLSAAE-AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--P-----  263 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--c-----
Confidence            33445566666665 555444 344455556667899999999999999998 7766555444444333221  0     


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                        .  .+...+. ............+....+..|..|++.|++..|+.+...+++..+++.....+.+..++...+.+.+
T Consensus       264 --~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~  338 (352)
T cd06174         264 --S--LALLLVA-LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA  338 (352)
T ss_pred             --c--HHHHHHH-HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence              0  1111222 2222233334456677888999999999999999999999999999998888887778878888877


Q ss_pred             HHHHHHHHHH
Q 020863          271 GIAVLAVVFV  280 (320)
Q Consensus       271 ~~~~~~~~~~  280 (320)
                      .+.+++.+..
T Consensus       339 ~~~~i~~i~~  348 (352)
T cd06174         339 ALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHh
Confidence            7777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.18  E-value=2.4e-09  Score=95.73  Aligned_cols=174  Identities=14%  Similarity=0.041  Sum_probs=99.4

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK  163 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~  163 (320)
                      ..+++|+|+.+...+.......     +......+.|.++++.|.+....+.... ...+..+++.++++++.||+|+|+
T Consensus       198 ~~~~l~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~~-~~~~~~i~~~~~~~~l~~r~g~~~  271 (382)
T TIGR00902       198 FIALLKNPMNLRFLAAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLWG-IGVLAEIIIFAFSNKLFQNCSARD  271 (382)
T ss_pred             HHHHHcChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHHH-HHHHHHHHHHHHhHHHHhhCCHHH
Confidence            4567788777665443322111     1222223456666778887665554433 455556778888999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHH-H
Q 020863          164 LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV-N  242 (320)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~-~  242 (320)
                      ++..+.....+....+...  .       ..  +..+....+....++. ..+....+.++. |++.|+++.|+.+.. .
T Consensus       272 ~l~~~~~~~~~~~~~~~~~--~-------~~--~~~~~~q~l~g~~~~~-~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~  338 (382)
T TIGR00902       272 LLLISAIACVGRWAIIGAI--E-------AF--PLIFLLQILHCGTFAV-CHLAAMRYIAAQ-PGSEIAKLQALYNALAM  338 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhH--h-------hH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhC-CHhhHHHHHHHHHHHHH
Confidence            8876666555554433211  0       11  1111111121222221 122234566777 999999999987643 3


Q ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          243 WISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                      .++..+++.+-..+.+..|. ..|...+++.+++.
T Consensus       339 g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       339 GGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            46666677777777777764 55666666665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.18  E-value=9.4e-10  Score=101.73  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=101.7

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ......|.+.++.+.+..+.....+.. .....++.++.|+++||+|||+.+..+.....++.+......    +     
T Consensus        38 ~~~~~~~~i~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~-----  107 (496)
T PRK03893         38 LITLVLTEVQGEFGLTTVQAASLISAA-FISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP----G-----  107 (496)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----H-----
Confidence            344456778888888766555544443 445778899999999999999988766555544444333210    0     


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                         ...+....++..+...+..+....+..|.+|.+.|+++.|+......++..+++.+...+.+..+|...|.+.+...
T Consensus       108 ---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        108 ---YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence               11112222222222223344556778899999999999999988888998888888777777777777766533322


Q ss_pred             HHHHHHHHhhcccCC
Q 020863          274 VLAVVFVILFVPETQ  288 (320)
Q Consensus       274 ~~~~~~~~~~~pet~  288 (320)
                      + ..++.....||++
T Consensus       185 ~-~~~~~~~~~p~~~  198 (496)
T PRK03893        185 I-FALWLRKNLPEAE  198 (496)
T ss_pred             H-HHHHHHHhCCCch
Confidence            2 2233334566653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.18  E-value=1e-09  Score=98.58  Aligned_cols=128  Identities=12%  Similarity=0.036  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchh
Q 020863          141 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWT  220 (320)
Q Consensus       141 ~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (320)
                      ..+...++.+..+++.||+|||+.+..+.....+......    ...+     .  +...+...+....... .......
T Consensus       263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~----~~~~-----~--~~~~~~~~l~g~~~~~-~~~~~~~  330 (396)
T TIGR00882       263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS----FATT-----A--LEVVILKMLHAFEVPF-LLVGCFK  330 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH----hcCC-----h--HHHHHHHHHHHHHHHH-HHHHHHH
Confidence            3444667788899999999999987665544333322211    1111     1  1111111111111110 1112334


Q ss_pred             cccccCCccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 020863          221 LNSEVYPEQYRGICGGM-SATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       221 ~~~ElfP~~~R~~~~gi-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  280 (320)
                      +..+.+|++.|+++.++ .+....+++.+++.+...+.+..|+..+|.+.+.+.+++.+..
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            66788899999887766 4566778888888888888888888888888777766665543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.17  E-value=3.6e-10  Score=99.38  Aligned_cols=160  Identities=23%  Similarity=0.315  Sum_probs=103.9

Q ss_pred             ehH-HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          118 YSP-TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       118 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ..| .+.++.|.+..+.+...+. ......++.++.|+++||+|||+.+..+.....++.....  +.  .     ..  
T Consensus        18 ~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~--~-----~~--   85 (352)
T PF07690_consen   18 ALPLYLAEELGLSPSQIGLLFSA-FFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA--S-----NF--   85 (352)
T ss_dssp             HHH-HHHCCSTTTSHCHHHHHHH-HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH--C-----CH--
T ss_pred             HHHHHHHHccCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh--h-----hH--
Confidence            345 5666778777666554444 4455789999999999999999988777666655533322  21  1     11  


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      + .+....+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..++...|.+.+.+.++.
T Consensus        86 ~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~  164 (352)
T PF07690_consen   86 W-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA  164 (352)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred             H-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence            1 122222222222223345566788999999999999999999999998888777776666667778888888887777


Q ss_pred             HHHHHhhcccCCCC
Q 020863          277 VVFVILFVPETQGL  290 (320)
Q Consensus       277 ~~~~~~~~pet~g~  290 (320)
                      .++...+.++++.+
T Consensus       165 ~il~~~~~~~~~~~  178 (352)
T PF07690_consen  165 AILFILFLPEPPPP  178 (352)
T ss_dssp             HHHHHCCC---STT
T ss_pred             hhhHhhhhhhcccc
Confidence            66544555554433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.16  E-value=1.5e-09  Score=99.25  Aligned_cols=158  Identities=16%  Similarity=0.192  Sum_probs=99.4

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ....+.|.+.+..|.+..+.+...+.. .....++.++.|+++||+|||+.++.+.....++.+.....  .       .
T Consensus        37 ~~~~~~~~i~~~~g~s~~~~~~~~s~~-~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~-------~  106 (455)
T TIGR00892        37 AVTVFFKELQQIFQATYSETAWISSIM-LAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--S-------N  106 (455)
T ss_pred             chhhhHHHHHHHhCcchhHHHHHHHHH-HHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--h-------h
Confidence            345567888888998766655554443 33456778889999999999998876655444443332221  1       0


Q ss_pred             chhHHHHHHHHHHHHHHhccc-cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGM-GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGI  272 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  272 (320)
                      .  +.......++.. ...+. .+....+..+.+| +.|+++.|+.+....++..+++.+...+.+..||..+|.+.+++
T Consensus       107 ~--~~l~~~~~~l~G-~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~  182 (455)
T TIGR00892       107 V--IELYLTAGFITG-LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGL  182 (455)
T ss_pred             H--HHHHHHHHHHHH-hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            0  111111111111 11111 2333456678886 67999999999888888888888777777778898899888777


Q ss_pred             HHHHHHHHHhhcc
Q 020863          273 AVLAVVFVILFVP  285 (320)
Q Consensus       273 ~~~~~~~~~~~~p  285 (320)
                      .++..+..++..|
T Consensus       183 ~~~~~v~~~~~~~  195 (455)
T TIGR00892       183 LLHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHHHHHhCC
Confidence            6655554444444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.16  E-value=1.4e-09  Score=96.11  Aligned_cols=132  Identities=11%  Similarity=-0.013  Sum_probs=81.8

Q ss_pred             eehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      .+.|.+.++ .+.+....+. ......+...++.++.+++.||++||+....+.....++...+...  .  .    .  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~----~--  300 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGW-VLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--P--P----N--  300 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--c--h----h--
Confidence            345676665 5666544443 3444555578889999999999999987765544333333222211  1  0    0  


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV  260 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                      .+...+...+.. +......+....+..|.+|++.|+++.|+.+....++..+++.+...+.+..
T Consensus       301 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       301 FPLFLVLWFAIG-VGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            111122222222 2222234455678889999999999999999999999988888777666543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.16  E-value=9.6e-10  Score=83.04  Aligned_cols=132  Identities=25%  Similarity=0.319  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhccc
Q 020863          144 TNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS  223 (320)
Q Consensus       144 ~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (320)
                      ...++.++.+++.||+|||+.+..+.....++.......    .     ..  +.......+. ........+..+.+..
T Consensus        10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~----~-----~~--~~~~~~~~~~-g~~~~~~~~~~~~~~~   77 (141)
T TIGR00880        10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS----S-----NI--TVLIIARFLQ-GFGAAFALVAGAALIA   77 (141)
T ss_pred             HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh----c-----cH--HHHHHHHHHH-HHHHHHHHHhHHHHHH
Confidence            356788899999999999998776555444443332211    1     10  1111111111 1111222345567889


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          224 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       224 ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      |.+|++.|+++.|+.+....++..+++.....+.+..++...+.+.+.+.+++.+..+++.|||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999999999999888887777767777777777777777766666666764

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.16  E-value=1.4e-09  Score=100.34  Aligned_cols=169  Identities=14%  Similarity=0.130  Sum_probs=95.5

Q ss_pred             eeeeehHHHHHHhCCCCcH-HHHHHH----HHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 020863          114 TVMYYSPTIVQMAGFQSNQ-LALLLS----LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS  188 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~-~~~~~~----~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      ...+..|.+-+....+... ......    ........++.++.|+++||+|||+.+..+.....++.+......    +
T Consensus        34 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~----~  109 (490)
T PRK10642         34 VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIP----S  109 (490)
T ss_pred             HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcc----c
Confidence            3344556666665433222 111111    222344678899999999999999998877766666555443321    1


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHh
Q 020863          189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA--------ELV  260 (320)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~--------~~~  260 (320)
                      ......+....++..-+.......+..+....+.+|.+|++.|+...++......+|..+++.+...+.        ...
T Consensus       110 ~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~  189 (490)
T PRK10642        110 YATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDW  189 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCc
Confidence            000000111112333333444444445566788999999999999988877666566655554433222        135


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          261 GTGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       261 g~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      ||...|++.+.+.+++ ++....+||+
T Consensus       190 gWR~~f~i~~~~~l~~-~~~~~~~~es  215 (490)
T PRK10642        190 GWRIPFFIALPLGIIG-LYLRHALEET  215 (490)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence            7887887755444433 3334567886

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.15  E-value=1.4e-09  Score=99.85  Aligned_cols=151  Identities=14%  Similarity=0.070  Sum_probs=98.1

Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Q 020863          126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLAL  205 (320)
Q Consensus       126 ~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (320)
                      .+.+....+...+ .......++.+.+|+++||+|||+.+..+.....+..........  ..        ...++...+
T Consensus        71 ~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~--------~~~l~~~r~  139 (465)
T TIGR00894        71 FKWSGALQGLILS-SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--GG--------IALVVFCRV  139 (465)
T ss_pred             CCCCHHHhhHHHH-HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--cC--------chHHHHHHH
Confidence            4454444443333 344457888999999999999999887665544444333222211  00        111222333


Q ss_pred             HHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhc
Q 020863          206 YIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILFV  284 (320)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
                      +.........+....+.+|.+|++.|+++.|+......++..+++.+...+.+. .||...|++.+...++..++.+.+.
T Consensus       140 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       140 IQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             HHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence            333444444556678889999999999999999998889998888887777776 4888888887776665555555555


Q ss_pred             ccC
Q 020863          285 PET  287 (320)
Q Consensus       285 pet  287 (320)
                      ||.
T Consensus       220 ~~~  222 (465)
T TIGR00894       220 ADD  222 (465)
T ss_pred             cCC
Confidence            543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.15  E-value=2.9e-09  Score=96.73  Aligned_cols=173  Identities=17%  Similarity=0.101  Sum_probs=93.3

Q ss_pred             CcceeeeehHHHHHHhC---CCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHh
Q 020863          111 GINTVMYYSPTIVQMAG---FQSNQLAL--LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIS  185 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~~g---~~~~~~~~--~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~  185 (320)
                      ....+.+..|.+.++.+   .+..+...  .......+...++.+++|+++||+|||+.+..+.....++.......   
T Consensus        37 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~---  113 (432)
T PRK10406         37 DFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL---  113 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc---
Confidence            33334455666777664   22222111  11112223345888999999999999998877666555544433221   


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH--------
Q 020863          186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA--------  257 (320)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~--------  257 (320)
                       ++...........++...+.......+..+....+.+|.+|++.|+...++.......+..+++.....+.        
T Consensus       114 -~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  192 (432)
T PRK10406        114 -PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAEL  192 (432)
T ss_pred             -CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence             10000000111122333333333333445666789999999999999888765555555555444332222        


Q ss_pred             HHhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          258 ELVGTGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       258 ~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      ...||...|.+.+...++. .+....+||++
T Consensus       193 ~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~  222 (432)
T PRK10406        193 REWGWRIPFALGAVLAVVA-LWLRRQLDETS  222 (432)
T ss_pred             hccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            1357888887655555443 23344567764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.14  E-value=6.3e-09  Score=93.91  Aligned_cols=175  Identities=16%  Similarity=0.161  Sum_probs=100.7

Q ss_pred             HHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 020863          120 PTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI  198 (320)
Q Consensus       120 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (320)
                      +.+.+ +.+++..+.....+++. ....+..+..|++.||+|.|++...+.....+....+.+..  ... . +. +.. 
T Consensus        58 ~~~~~~~~~ls~~q~g~l~ai~~-l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~--~~~-~-~s-~~~-  130 (462)
T PRK15034         58 VNLNKIGFNFTTDQLFLLTALPS-VSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV--QNP-N-TP-FGI-  130 (462)
T ss_pred             HHhhhhhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--ccc-C-CC-HHH-
Confidence            34444 57887776665555444 44667777889999999999987766655444443332211  100 0 01 111 


Q ss_pred             HHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH-----HH-------------h
Q 020863          199 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA-----EL-------------V  260 (320)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~-----~~-------------~  260 (320)
                       +....++.... .+..+......++.||++.||++.|+....++.+..++..+.|.+.     ..             .
T Consensus       131 -lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~  208 (462)
T PRK15034        131 -FIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVM  208 (462)
T ss_pred             -HHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchH
Confidence             11111111111 2233445577889999999999999998778888776666555433     11             1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhcccCC--CCCHHHHHHHHhccc
Q 020863          261 GTGATFLILAGIAVLAVVFVILFVPETQ--GLTFLEVEQMWKERA  303 (320)
Q Consensus       261 g~~~~~~~~~~~~~~~~~~~~~~~pet~--g~~~~~~~~~~~~~~  303 (320)
                      ++..++.++..+.++.+++.+++.++.+  +.+..|..+.++++.
T Consensus       209 ~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~  253 (462)
T PRK15034        209 SLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLH  253 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCc
Confidence            2344555666666666655555555533  345666666666543

>PRK03699 putative transporter; Provisional

Probab=99.14  E-value=7e-09  Score=93.08  Aligned_cols=151  Identities=9%  Similarity=0.061  Sum_probs=92.8

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .....|.+.++.+.+..+.+...+. ..+...++.+++|+++||+|||+.+..+.....++.......    +     ..
T Consensus        26 ~g~~~~~i~~~~~~s~~~~g~~~s~-~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~----~-----~~   95 (394)
T PRK03699         26 TGMVMGPIAEYFNLPVSSMSNTFTF-LNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS----H-----SL   95 (394)
T ss_pred             HhhhhHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----c-----hH
Confidence            4455688888888876665554443 445578899999999999999998776655444444332211    1     11


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-LVGTGATFLILAGIA  273 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~  273 (320)
                        +..+....+.....+ ...+....+.+|.+|++.|+.+.+..+....+++.+++.....+.. ..+|...|.+.+.+.
T Consensus        96 --~~~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~  172 (394)
T PRK03699         96 --ALFSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVY  172 (394)
T ss_pred             --HHHHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence              111111122211111 1233445677899999999998888776666777676666555443 457887887766655


Q ss_pred             HHHHH
Q 020863          274 VLAVV  278 (320)
Q Consensus       274 ~~~~~  278 (320)
                      ++..+
T Consensus       173 ~~~~~  177 (394)
T PRK03699        173 VAIFI  177 (394)
T ss_pred             HHHHH
Confidence            54443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.13  E-value=1e-09  Score=101.17  Aligned_cols=160  Identities=15%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK  163 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~  163 (320)
                      .+++++++.+...+..... .    ..++...++.|.++++ .|.+..+ ......+..+...++.+++|++.||+|||+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~p~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~  322 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLL-G----LGLYGSFYLLPLYLQQVLGYTALQ-AGLHILPVGLAPMLSSPIAGRMGDKIDPRK  322 (485)
T ss_pred             HHHHcCCChHHHHHHHHHH-H----HHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence            4567777665543332211 1    1222334566777765 5665544 344455566667889999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHH
Q 020863          164 LALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNW  243 (320)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~  243 (320)
                      ....+.....++...+...  . .. . .. ... ......+.....+....+ ......+..|++.|+++.|+.+....
T Consensus       323 ~~~~g~~~~~~~~~~~~~~--~-~~-~-~~-~~~-~~~~~~l~g~g~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  394 (485)
T TIGR00711       323 LVTIGLILYAVGFYWRAFT--F-TP-D-TP-FLA-IALPQFIRGFGMGCFFMP-LTTIALSGLPPHKIARGSSLSNFTRQ  394 (485)
T ss_pred             HHHHHHHHHHHHHHHHhcc--C-CC-C-CC-HHH-HHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHhHHHHHHHHHHH
Confidence            8766554444333322211  1 11 0 11 111 111111111111111112 22344577899999999999999998


Q ss_pred             HHHHHHHHHHHHHHH
Q 020863          244 ISNLIVAQTFLTVAE  258 (320)
Q Consensus       244 ~~~~~~~~~~~~~~~  258 (320)
                      +++.+++.+...+.+
T Consensus       395 ~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       395 LGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998888877766554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.12  E-value=1.7e-09  Score=99.37  Aligned_cols=162  Identities=17%  Similarity=0.143  Sum_probs=97.9

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.+.+..+.+...+ .......++.+++|+++||+|||+++..+.....+....+........    +.   
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~----~~---  121 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGL-GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS----VS---  121 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc----ch---
Confidence            4467788888988766555444 445557889999999999999999887665554444443332211110    01   


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV---GTGATFLILAGIA  273 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~  273 (320)
                      ...++...+..........+....+.+|.+|++.|+++.|+......++..+++.+...+....   ++...|.+.+.+.
T Consensus       122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~  201 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIA  201 (467)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence            1112222222222222234555678899999999999999888777788777766554443332   3555566655555


Q ss_pred             HHHHHHHHhhccc
Q 020863          274 VLAVVFVILFVPE  286 (320)
Q Consensus       274 ~~~~~~~~~~~pe  286 (320)
                      ++..+..+++.++
T Consensus       202 ~~~~i~~~~~~~~  214 (467)
T PRK09556        202 LIIGFIGLRYGSD  214 (467)
T ss_pred             HHHHHHHHHhCCC
Confidence            5444444444443

>PRK11043 putative transporter; Provisional

Probab=99.12  E-value=4.7e-09  Score=94.37  Aligned_cols=153  Identities=17%  Similarity=0.113  Sum_probs=92.4

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA  199 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (320)
                      |.+.++.+.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.......    +     ..  +..
T Consensus        30 ~~i~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----~-----~~--~~l   97 (401)
T PRK11043         30 KAIQADLQTSASAVSASLS-LFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----E-----SA--AQL   97 (401)
T ss_pred             HHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh----c-----CH--HHH
Confidence            4466778887665555444 4445568899999999999999998876655444433332211    1     11  111


Q ss_pred             HHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 020863          200 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF  279 (320)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  279 (320)
                      ++...+ .........+....+.+|.+|++.|+...+.......++..+++.....+.+..||...|.+.+.+.++..+.
T Consensus        98 ~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043         98 LVLRFV-QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHH-HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            111111 1111111122334567899999988877777777777777777777766777778888887776666655554


Q ss_pred             HHhhcc
Q 020863          280 VILFVP  285 (320)
Q Consensus       280 ~~~~~p  285 (320)
                      .++..|
T Consensus       177 ~~~~~~  182 (401)
T PRK11043        177 TLRLKP  182 (401)
T ss_pred             HHHcCC
Confidence            433333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.12  E-value=3.7e-09  Score=97.26  Aligned_cols=149  Identities=20%  Similarity=0.153  Sum_probs=92.7

Q ss_pred             CcceeeeehHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 020863          111 GINTVMYYSPTI-VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSS  188 (320)
Q Consensus       111 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      +++.+..+.+.+ .+..|.+..+...... .......+..+++|+++|| +|||+.+..+.....++.+.+....   ..
T Consensus        29 ~~y~~~~~l~~yl~~~lg~~~~~a~~i~~-~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~---~~  104 (489)
T PRK10207         29 GYYGVQGILAVFFVKQLGFSQEQAFITFG-AFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL---LK  104 (489)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence            344444444444 4456776555433333 3333355667799999999 9999999888776666655543321   00


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 020863          189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATF  266 (320)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~--R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  266 (320)
                          .   ....++..+ .........+....+.+|.||++.  |..+.++.....++++.+++.+.+.+.+..||+..|
T Consensus       105 ----~---~ll~~~~~l-~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F  176 (489)
T PRK10207        105 ----P---DLIFIALGT-IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTY  176 (489)
T ss_pred             ----h---hHHHHHHHH-HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence                0   111111211 222222234455678899999874  466778888888899988888888888888988888


Q ss_pred             HHHHH
Q 020863          267 LILAG  271 (320)
Q Consensus       267 ~~~~~  271 (320)
                      ++.+.
T Consensus       177 ~i~~i  181 (489)
T PRK10207        177 NLCGA  181 (489)
T ss_pred             HHHHH
Confidence            77543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.10  E-value=5.1e-09  Score=92.79  Aligned_cols=160  Identities=20%  Similarity=0.230  Sum_probs=95.8

Q ss_pred             eeeehHH-HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          115 VMYYSPT-IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       115 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ...+.|. +.++.|.+....+... ....+...++.++.|+++||+|||+.+..+.....++.......  ..       
T Consensus        20 ~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~-------   89 (366)
T TIGR00886        20 FSPLAVQMIKDDLGLSTAQLGNLV-AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQ-------   89 (366)
T ss_pred             hHHhhhHHHHHHhCCCHHHhhHhh-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hh-------
Confidence            3445674 6678888766655544 44455578999999999999999998877766555554443322  10       


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------hcch
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL----------VGTG  263 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~----------~g~~  263 (320)
                      .+ +..++. .+..... .+.......+.+|.+|++.|+++.++......++..+++.+.+.+...          .+|.
T Consensus        90 ~~-~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~  166 (366)
T TIGR00886        90 SY-SVLLLL-RLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG  166 (366)
T ss_pred             hH-HHHHHH-HHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            01 111111 1222222 222333456788999999999999998877777777776665554432          2566


Q ss_pred             hHH-HHHHHHHHHHHHHHHhhcccC
Q 020863          264 ATF-LILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       264 ~~~-~~~~~~~~~~~~~~~~~~pet  287 (320)
                      ..+ ...+.+..+..++.+.+.+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       167 WAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcccC
Confidence            666 333444444444444455554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.10  E-value=1.4e-09  Score=98.29  Aligned_cols=164  Identities=17%  Similarity=0.140  Sum_probs=97.3

Q ss_pred             eeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          116 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      ....|.+.++.+.+.... ...........+++.++.|+++||+|||+.+..+.....++...+........    +. +
T Consensus        37 ~~~~~~~~~~~~~s~~~~-g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~-~  110 (417)
T PRK10489         37 GVAVPVQIQMMTGSTLQV-GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE----PS-L  110 (417)
T ss_pred             HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC----Cc-H
Confidence            345677777777755443 34444555667888999999999999999776554444443333221111110    01 1


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL  275 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  275 (320)
                       + .+....+..........+....+.+|.+|++.|+++.++......++..+++.+...+.+..++.+.+.+.+...++
T Consensus       111 -~-~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~  188 (417)
T PRK10489        111 -L-AIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFI  188 (417)
T ss_pred             -H-HHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             1 11111111111111112333467789999999999999988888888888887777776667777777665555444


Q ss_pred             HHHHHHhhcccCC
Q 020863          276 AVVFVILFVPETQ  288 (320)
Q Consensus       276 ~~~~~~~~~pet~  288 (320)
                      ..+ ..+.+|+++
T Consensus       189 ~~~-~~~~l~~~~  200 (417)
T PRK10489        189 TLL-PLLRLPALP  200 (417)
T ss_pred             HHH-HHHhCCCCC
Confidence            443 345567653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.09  E-value=1.8e-08  Score=91.90  Aligned_cols=168  Identities=21%  Similarity=0.294  Sum_probs=105.2

Q ss_pred             ehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch--HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          118 YSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK--KLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       118 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      +...+.+ ..|++..+. ....+...+.+++|+++.+++.||+|.|  +.+..+.....+..+...+-+.....+. ...
T Consensus       303 ~~~i~a~~~lg~s~~~l-~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~-~~~  380 (477)
T PF11700_consen  303 FAGIYATEVLGMSTTQL-IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGL-KSP  380 (477)
T ss_pred             HHHHHHHHhcCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCc-ccH
Confidence            3333434 678876654 3445555666889999999999999998  6655443332111111111011111111 111


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIA  273 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  273 (320)
                      +.   .....++...+..+..+..-.+.+|+.|++..+...|+....++..++++|.++..+.+..| ....+.....+.
T Consensus       381 ~~---f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf  457 (477)
T PF11700_consen  381 WE---FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF  457 (477)
T ss_pred             HH---HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            11   11122222223333445567888999999999999999999999999999999999988887 566777766776


Q ss_pred             HHHHHHHHhhcccCCCCC
Q 020863          274 VLAVVFVILFVPETQGLT  291 (320)
Q Consensus       274 ~~~~~~~~~~~pet~g~~  291 (320)
                      +++.++ +..++..||+.
T Consensus       458 ~~gl~l-l~~v~~~~g~~  474 (477)
T PF11700_consen  458 LIGLIL-LFFVDVEKGRE  474 (477)
T ss_pred             HHHHHH-Hhhccchhhhh
Confidence            666654 46777777764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.09  E-value=6.2e-09  Score=94.65  Aligned_cols=163  Identities=18%  Similarity=0.131  Sum_probs=89.3

Q ss_pred             HHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHH-HHHH----HHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHH
Q 020863          103 LQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL-SLAV----AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLV  177 (320)
Q Consensus       103 l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~----~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~  177 (320)
                      +..+..+.....+....|.+.++.+.+..+..... +...    .....++.++.|+++||+|||+.+..+.....++..
T Consensus        22 ~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~  101 (434)
T PRK15075         22 SGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTL  101 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence            33444444445566778888888887665543322 1111    111236788899999999999998877665554444


Q ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHH-
Q 020863          178 LLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV-  256 (320)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~-  256 (320)
                      ...+.    ++...........++...+..........+....+.+|.+|++.|+++.++.....+++..+++.+-..+ 
T Consensus       102 l~~~~----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~  177 (434)
T PRK15075        102 LIAFV----PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN  177 (434)
T ss_pred             HHHhC----CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33221    1000000000001122222222222222333457889999999999999988777666655444332222 


Q ss_pred             -------HHHhcchhHHHHH
Q 020863          257 -------AELVGTGATFLIL  269 (320)
Q Consensus       257 -------~~~~g~~~~~~~~  269 (320)
                             ....||..+|++.
T Consensus       178 ~~~~~~~~~~~gWr~~f~~~  197 (434)
T PRK15075        178 QWLSPAQMAEWGWRIPFLIG  197 (434)
T ss_pred             HhCCHHHHhccchHHHHHHH
Confidence                   2345777777653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.08  E-value=3.8e-09  Score=107.46  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             HHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 020863          120 PTIVQMAGFQSN-QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI  198 (320)
Q Consensus       120 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (320)
                      +++.+..|.+.. ..+ .......++.+++.+++++++||+++|+.+..+.++.+++.+.+...  .       .  .+.
T Consensus       257 ~~~~~~~g~s~~~~~g-~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~-------~--~~~  324 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQ-YLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--P-------S--LAS  324 (1146)
T ss_pred             HHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--h-------h--HHH
Confidence            334455677655 333 33444455577889999999999998887665544444433332221  0       0  011


Q ss_pred             HHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Q 020863          199 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAV  277 (320)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  277 (320)
                      .+++..++..+. ....+....+..+..|++.|+++.|+.+.+..++..+++.+...+... .+....+.+.+.+.++..
T Consensus       325 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  403 (1146)
T PRK08633        325 VLVLFFLFGFSA-GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGT  403 (1146)
T ss_pred             HHHHHHHHHHHH-HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            222222222222 122334467778999999999999999888888776554443333221 222334444444444444


Q ss_pred             HHHHhhcccC
Q 020863          278 VFVILFVPET  287 (320)
Q Consensus       278 ~~~~~~~pet  287 (320)
                      ++.....|++
T Consensus       404 ~~~~~~~~~~  413 (1146)
T PRK08633        404 LYTLLLLPDS  413 (1146)
T ss_pred             HHHHHHhHHH
Confidence            4444455554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.08  E-value=1.7e-09  Score=93.94  Aligned_cols=162  Identities=20%  Similarity=0.194  Sum_probs=112.1

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .-.|.+.++.+++..+.+.+.+ ...+...++-.+.|.++||.+.|..+..+++.++++.+++......           
T Consensus        50 ~a~p~l~e~~~lsk~~lG~i~s-~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~-----------  117 (448)
T COG2271          50 LAMPALIEDGGLSKTQLGILGS-AFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL-----------  117 (448)
T ss_pred             hccHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH-----------
Confidence            4467888888887666655444 4556678999999999999999998888877777777666543210           


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHH--HHHHHHhcchhHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF--LTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      ++..+...+-..+-+.|+ |......+.-||++.||+..++=++..++|+.+.+.+.  .....+.+|...|++-+++++
T Consensus       118 ~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiai  196 (448)
T COG2271         118 FLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAI  196 (448)
T ss_pred             HHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            112222222233333343 33456777899999999999999999999988877766  445555578888888777777


Q ss_pred             HHHHHHHhhc---ccCCCCC
Q 020863          275 LAVVFVILFV---PETQGLT  291 (320)
Q Consensus       275 ~~~~~~~~~~---pet~g~~  291 (320)
                      +..+++++..   ||+.|.+
T Consensus       197 ival~~~~~~rd~Pqs~GLP  216 (448)
T COG2271         197 IVALILLFLLRDRPQSEGLP  216 (448)
T ss_pred             HHHHHHHHHhCCCccccCCC
Confidence            6666666665   4555553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.08  E-value=6.7e-09  Score=95.38  Aligned_cols=155  Identities=17%  Similarity=0.078  Sum_probs=99.3

Q ss_pred             cCcceeeeehHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHh
Q 020863          110 TGINTVMYYSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFIS  185 (320)
Q Consensus       110 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~  185 (320)
                      .+++.+..++|.++++   .|.+..+.+. ..........++.+++|+++|| +|||+.+..+.....++...+...   
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~-~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---   99 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGFSQEQAFI-IFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---   99 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc---
Confidence            3444555567777665   5666555444 3444555578999999999999 899998887766555554433221   


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020863          186 GSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY---RGICGGMSATVNWISNLIVAQTFLTVAELVGT  262 (320)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~---R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~  262 (320)
                       +.      . +...++..+ .........+....+.+|.+|++.   |+++.++.+...++|+.+++.+...+.+..|+
T Consensus       100 -~~------~-~~~~~~~~l-~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924       100 -IY------P-DLIFYGLGT-IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             -cc------H-hHHHHHHHH-HHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence             10      0 111111111 111111233455577889998754   88888999999999999999888888887788


Q ss_pred             hhHHHHHHHHHHHHH
Q 020863          263 GATFLILAGIAVLAV  277 (320)
Q Consensus       263 ~~~~~~~~~~~~~~~  277 (320)
                      ...|.+.+...+++.
T Consensus       171 ~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       171 HVGFNLAAVGMVIGL  185 (475)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877665444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.07  E-value=7.8e-09  Score=90.62  Aligned_cols=155  Identities=24%  Similarity=0.306  Sum_probs=101.4

Q ss_pred             CcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          111 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      +........|.+.++.+.+..+.+... ........++.++.|+++||+|||+....+.....++.......    .   
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~----~---   85 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIV-SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----S---   85 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----c---
Confidence            334444566778888887765554443 44455578899999999999999998776666555554443322    0   


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                        . . + ......+..........+....+.+|.+|++.|++..|+......++..+++.+...+.+..++...+.+.+
T Consensus        86 --~-~-~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          86 --S-L-W-LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA  160 (352)
T ss_pred             --c-H-H-HHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence              0 0 1 111122222222222344556788999999999999999999999999888888877777767766666655


Q ss_pred             HHHHHHHH
Q 020863          271 GIAVLAVV  278 (320)
Q Consensus       271 ~~~~~~~~  278 (320)
                      .+.++..+
T Consensus       161 ~~~~~~~~  168 (352)
T cd06174         161 ILGLLLAL  168 (352)
T ss_pred             HHHHHHHH
Confidence            55544443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.06  E-value=9.1e-09  Score=92.53  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 020863          121 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAV  200 (320)
Q Consensus       121 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (320)
                      ++.++.|.+....+.... .......+..+++|+++||+|||+.+..+.....+........    +     . . +...
T Consensus        36 ~~~~~~g~s~~~~gl~~~-~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~----~-----~-~-~~l~  103 (400)
T PRK11646         36 RFVDQLGWAAVMVGIALG-LRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA----H-----E-P-WLLW  103 (400)
T ss_pred             HHHHHhCCcHHHHHHHHH-HHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh----c-----c-H-HHHH
Confidence            345667877655444333 3344456667889999999999998877666555544433221    1     1 1 1111


Q ss_pred             HHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 020863          201 IGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  280 (320)
                      +...+ .........+....+..|.+|++.|+++.|+......++..+++.+...+. ..|+...|.+.+...++..++.
T Consensus       104 ~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        104 LSCIL-SGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence            11111 111111123344567789999999999999999999999988887777666 5677777777666665555554


Q ss_pred             HhhcccC
Q 020863          281 ILFVPET  287 (320)
Q Consensus       281 ~~~~pet  287 (320)
                      .++.||.
T Consensus       182 ~~~~~~~  188 (400)
T PRK11646        182 AWLLPAY  188 (400)
T ss_pred             HHhCCcc
Confidence            5566764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.05  E-value=2.1e-08  Score=89.62  Aligned_cols=174  Identities=14%  Similarity=0.067  Sum_probs=90.0

Q ss_pred             chhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020863           83 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK  162 (320)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR  162 (320)
                      ++++++++|..+...........     .+.....+.|.+.++.|.+....+.... ......++..++.+++.||+|+|
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~~r~~~~  270 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWS-LGVVAEVLIFAFSNRLFRRWSAR  270 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHH
Confidence            35667787777665443222211     1111223345555677777555444433 33445667778899999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      +.+..+.....++...+..  .  +     ..  +..++...+....+... .+....+..+. |++.+++..++.+...
T Consensus       271 ~~l~~~~~~~~~~~~~~~~--~--~-----~~--~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~  337 (382)
T PRK11128        271 DLLLLSAICGVVRWGLMGS--T--T-----AL--PWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALA  337 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHh--h--h-----hH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHH
Confidence            9876655544443332211  1  1     11  11122222222211111 22233455565 4555677777765443


Q ss_pred             -HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          243 -WISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       243 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                       .++..+++.+...+.+..|. ..++..+++.+++
T Consensus       338 ~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        338 MGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence             34446677777777777664 3455444444443

>TIGR00898 2A0119 cation transport protein

Probab=99.05  E-value=3.4e-09  Score=98.27  Aligned_cols=153  Identities=23%  Similarity=0.249  Sum_probs=92.5

Q ss_pred             ehHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          118 YSPTIVQMAGFQ---SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       118 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      +.|.+.++.+.+   ....+. ......+...++.++.|+++||+|||+.+..+.....++.+...+.    +     . 
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~-~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~----~-----~-  179 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDL-TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS----P-----N-  179 (505)
T ss_pred             ccccEEEEecceechHHHHHH-HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc----c-----c-
Confidence            445666677775   333333 3344455578999999999999999998876655554444333221    1     1 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                        ...+....++..+...+..+....+.+|.+|++.|+.+.++......++.++++.+...+   .+|...+.+.+...+
T Consensus       180 --~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~~wr~~~~~~~i~~~  254 (505)
T TIGR00898       180 --YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI---PDWRWLQLAVSLPTF  254 (505)
T ss_pred             --HHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Confidence              111222222333333344566778999999999999988887655555555544332222   136667776666655


Q ss_pred             HHHHHHHhhcccC
Q 020863          275 LAVVFVILFVPET  287 (320)
Q Consensus       275 ~~~~~~~~~~pet  287 (320)
                      +..+. .+++||+
T Consensus       255 ~~~~~-~~~~~es  266 (505)
T TIGR00898       255 LFFLL-SWFVPES  266 (505)
T ss_pred             HHHHH-HHhcCCC
Confidence            55444 4678886

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.05  E-value=8.5e-09  Score=92.62  Aligned_cols=153  Identities=15%  Similarity=0.038  Sum_probs=88.9

Q ss_pred             eehHH-HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPT-IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      ...|. +.++.|.+....+...+ .......++.++.|+++||+|||+++..+.....++............ .   ...
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~  110 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVIS-LQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA-W---PVL  110 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHH-HHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc-c---chh
Confidence            34454 44567777665554444 444557888999999999999999988776555444333322211110 0   000


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      ....++...+..........+....+..|.+|.+.|+++.|+......++..+++.+-..+.+..|+...+.+.+.+.+
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            1111222222222222223344456678999999999999887766667766777666666666777665555444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.03  E-value=3.6e-09  Score=93.83  Aligned_cols=159  Identities=17%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ....+.|.+.++.+.+..+.+...+ .......++.+..|+++||+|||+.+..+.....++.........         
T Consensus        21 ~~~~~~~~~~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~---------   90 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVGVTAVAIWFT-LLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS---------   90 (377)
T ss_pred             hhhhHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH---------
Confidence            3445678888889987666555444 445557899999999999999999887766555554443332210         


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                       + +...+...+. ........+.......|.+| +.|+++.++......++..+++.......+..||...|.+.+...
T Consensus        91 -~-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~  166 (377)
T TIGR00890        91 -L-AALYLTYGLA-SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIF  166 (377)
T ss_pred             -H-HHHHHHHHHH-hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence             0 1111111111 11111112223345667777 459999888877766776665555555555567877888777776


Q ss_pred             HHHHHHHHhhccc
Q 020863          274 VLAVVFVILFVPE  286 (320)
Q Consensus       274 ~~~~~~~~~~~pe  286 (320)
                      ++..+..+++.++
T Consensus       167 ~~~~~~~~~~~~~  179 (377)
T TIGR00890       167 LLVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHHHHheec
Confidence            6666555555544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.03  E-value=4.1e-08  Score=88.12  Aligned_cols=213  Identities=16%  Similarity=0.153  Sum_probs=107.0

Q ss_pred             CchHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|++.++.+++..+. +..+||+|+.      +++.                                ....++.
T Consensus       171 ~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~------~~~~--------------------------------~~~~~~~  212 (394)
T PRK10213        171 IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE------PSHQ--------------------------------KQNTFRL  212 (394)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc------cccc--------------------------------hhHHHHH
Confidence            37999999988877765444 3457886521      0000                                0012235


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      +++|..+...+..... .... .  ....++.|.+.++.|.+...... ......+...++.++.+++.||.+|+.... 
T Consensus       213 l~~~~~~~~~~~~~~~-~~~~-~--~~~~~~~p~~~~~~g~s~~~~g~-~~~~~~~~~iig~~~~~~l~~r~~~~~l~~-  286 (394)
T PRK10213        213 LQRPGVMAGMIAIFMS-FAGQ-F--AFFTYIRPVYMNLAGFGVDGLTL-VLLSFGIASFVGTSLSSFILKRSVKLALAG-  286 (394)
T ss_pred             hcCHHHHHHHHHHHHH-HHHH-H--HHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHH-
Confidence            6666665543322111 1111 1  11223457777777877654333 333444557788889999999954443332 


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      ......++...+...  . .     .  .+.......+....+. ...+....+..+..|++ +++..++......++..
T Consensus       287 ~~~~~~~~~~~l~~~--~-~-----~--~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~  354 (394)
T PRK10213        287 APLVLAVSALVLTLW--G-S-----D--KIVATGVAIIWGLTFA-LVPVGWSTWITRSLADQ-AEKAGSIQVAVIQLANT  354 (394)
T ss_pred             HHHHHHHHHHHHHHH--h-h-----h--HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHH
Confidence            222222221111111  1 0     0  0111112222221211 11222233455666744 45566666666677888


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          248 IVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                      +++.+...+.+..|....+...+++.++..
T Consensus       355 ~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        355 CGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            888888888887776656655554444443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.02  E-value=1.3e-08  Score=91.26  Aligned_cols=151  Identities=14%  Similarity=0.112  Sum_probs=92.9

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA  199 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (320)
                      +.+.++.+.+....++. .........+..+++|+++||+|||+++..+.....++.+.......            .  
T Consensus        27 ~~~~~~~~~s~~~~~~~-~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~------------~--   91 (393)
T PRK11195         27 IALLKELHYPDWSQPLL-QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH------------P--   91 (393)
T ss_pred             HHHHHHcCCcHHHHHHH-HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH------------H--
Confidence            44566677665444433 33444557888999999999999999888776655444433222100            0  


Q ss_pred             HHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 020863          200 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF  279 (320)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  279 (320)
                      +. ..+..........+...++.+|++|++.|+++.|+......++..+++.+-..+.+.. +...+.+.+...+++ ++
T Consensus        92 ~~-~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~  168 (393)
T PRK11195         92 LL-AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-AL  168 (393)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HH
Confidence            11 1112223333445666788999999999999999988888888888877766655533 333444333333333 33


Q ss_pred             HHhhcccCC
Q 020863          280 VILFVPETQ  288 (320)
Q Consensus       280 ~~~~~pet~  288 (320)
                      ..+++||.+
T Consensus       169 ~~~~l~~~~  177 (393)
T PRK11195        169 FNLFIPRLG  177 (393)
T ss_pred             HHhcCCCCc
Confidence            446677754

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.02  E-value=3.9e-08  Score=88.72  Aligned_cols=138  Identities=18%  Similarity=0.134  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      +..+++++|++.+++++||+|||..+........++.............        -..+++-.+.....+...+ ...
T Consensus        68 ~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~--------e~li~GR~i~Gl~~gl~~~-~~p  138 (485)
T KOG0569|consen   68 IFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSF--------EMLILGRLIVGLACGLSTG-LVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHhHHHHH-HHH
Confidence            3445578899999999999999988777766666665555444322110        1122222222222222222 334


Q ss_pred             hcccccCCccchhhhHHHHHHHHHHHHHHHHHH-HHHHH-HHhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          220 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQT-FLTVA-ELVGTGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      .|..|+.|++.||....+......++..++..+ .+.+. ....|...+.+-+..+++ ..+...+.||+
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~-~l~~l~~~PES  207 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL-QLALLPFLPES  207 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH-HHHHHhcCCCC
Confidence            688899999999988777766666666655332 22222 112233333333333333 34456789998

>PTZ00207 hypothetical protein; Provisional

Probab=99.01  E-value=3e-08  Score=92.09  Aligned_cols=161  Identities=14%  Similarity=0.148  Sum_probs=92.4

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ....+.+.+.++.|.+..+.+...++ ... .....+.+|++.||+|||+++..+.....++.+.........  . ...
T Consensus        45 ~fsv~s~~L~~~lgls~~~l~~i~sv-g~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~--i-~~s  119 (591)
T PTZ00207         45 AFNLISGAMQARYNLTQRDLSTITTV-GIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV--I-EGS  119 (591)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHH-HHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc--c-cCc
Confidence            34466788888889886665554443 222 234555789999999999999888777666665544431110  0 011


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                      .  +...+ .............+.......+.|| +.||++.|+......+++.+.+.++..+.. .++...|++.+.+.
T Consensus       120 ~--~~l~l-~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~  194 (591)
T PTZ00207        120 V--VRLSV-YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFA  194 (591)
T ss_pred             H--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            1  11111 1111111111112223345678887 669999999998888888765555554433 24555666666666


Q ss_pred             HHHHHHHHhhc
Q 020863          274 VLAVVFVILFV  284 (320)
Q Consensus       274 ~~~~~~~~~~~  284 (320)
                      ++..++...++
T Consensus       195 ~vv~ll~~~~v  205 (591)
T PTZ00207        195 LVVGILAIVFM  205 (591)
T ss_pred             HHHHHHHHhhe
Confidence            55555544444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.01  E-value=4.6e-08  Score=87.41  Aligned_cols=146  Identities=13%  Similarity=0.113  Sum_probs=90.2

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .+.|.+.++.|.+....+.... ...+..+++.+..++++||+|||+.+..+.....++.....    . .     ... 
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-~-----~~~-  288 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMA-LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-Q-----AAM-  288 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-h-----HHH-
Confidence            3567788877776555444333 44455788999999999999999887655444433332211    0 0     000 


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      ........    .......+....+..|..|++.++...+..+....++..+++.+...+.+..|+...|.+.+.+.++.
T Consensus       289 ~~~~~l~g----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~  364 (381)
T PRK03633        289 APALFILG----AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHHHHH----HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            11111111    11112345555667798888777766666666677888888888888888888777777766666555


Q ss_pred             HH
Q 020863          277 VV  278 (320)
Q Consensus       277 ~~  278 (320)
                      .+
T Consensus       365 ~~  366 (381)
T PRK03633        365 LL  366 (381)
T ss_pred             HH
Confidence            43

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.00  E-value=4e-08  Score=88.15  Aligned_cols=148  Identities=16%  Similarity=0.039  Sum_probs=95.0

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      .......|.+.++.+.+..+.+...+.. .....++.++.|+++||+|||+++..+.....++.......    ++    
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~-~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----~~----   96 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALP-VVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----PQ----   96 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----cc----
Confidence            3445667888999998876655555444 44578889999999999999999988777666665544322    11    


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-GTGATFLILAG  271 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~  271 (320)
                       ..   .+....+..........+....+..+.+| +.|+.+.|+.......+..+++.+.+.+.++. +|...+.+++.
T Consensus        97 -~~---~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~  171 (393)
T PRK09705         97 -SA---LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWAL  171 (393)
T ss_pred             -hH---HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence             01   11112222222222223344466788887 66999999888777777778777777666654 67666655444


Q ss_pred             HHH
Q 020863          272 IAV  274 (320)
Q Consensus       272 ~~~  274 (320)
                      ..+
T Consensus       172 ~~~  174 (393)
T PRK09705        172 PAV  174 (393)
T ss_pred             HHH
Confidence            433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.00  E-value=1.3e-08  Score=90.46  Aligned_cols=157  Identities=17%  Similarity=0.147  Sum_probs=90.0

Q ss_pred             hHH-HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH-HhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          119 SPT-IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS-SLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       119 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .|. +.++.|.+....+...+ .......+..++.|.++||+|||+.+.. +.....++.....  .  .+     . + 
T Consensus        20 l~~~l~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~--~--~~-----~-~-   87 (375)
T TIGR00899        20 LSLFLSEEVRARPAMIGLFYT-GSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA--W--NR-----N-Y-   87 (375)
T ss_pred             HHHHHHcccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH--h--cc-----h-H-
Confidence            344 34567877655554443 3334467778889999999999886543 2222222222211  1  11     1 1 


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGIC--GGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~--~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      + .++..............+....+..|..|++.|+.+  .+.....+.++..+++.....+.+..||...|.+.+.+.+
T Consensus        88 ~-~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~  166 (375)
T TIGR00899        88 F-LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFV  166 (375)
T ss_pred             H-HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHH
Confidence            1 111111111222222344445667788887777643  4665556667777777776666677788888888777766


Q ss_pred             HHHHHHHhhcccCC
Q 020863          275 LAVVFVILFVPETQ  288 (320)
Q Consensus       275 ~~~~~~~~~~pet~  288 (320)
                      +..+..++++||.+
T Consensus       167 ~~~~~~~~~~~~~~  180 (375)
T TIGR00899       167 LCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHhCCCcc
Confidence            66666666678754

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=98.99  E-value=2.6e-08  Score=89.26  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=82.8

Q ss_pred             ehHH-HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          118 YSPT-IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       118 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ..|. +.++.|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.+........ ...   ....
T Consensus        37 ~l~~~l~~~lg~s~~~~g~~~s-~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~---~~~~  111 (392)
T PRK12382         37 VIPLFVHHDLGFGNTMVGIAVG-IQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL-PVS---APFK  111 (392)
T ss_pred             hhhHHHHHhcCCcHHHHHHHHH-HHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc-ccc---hhHH
Confidence            3444 44677887666555444 4445578889999999999999998877655444433222111110 000   0001


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI  268 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  268 (320)
                      ...+....+..........+....+..|.+|++.|+++.|+.......+..+++.+-..+.+..|+...+.+
T Consensus       112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~  183 (392)
T PRK12382        112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT  183 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence            111111112222111112233345667999999999999987776667777777666656666676554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.98  E-value=1.9e-08  Score=102.36  Aligned_cols=139  Identities=12%  Similarity=0.025  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      ...+..++.++++|+++||+|||+++........+........+...      .   ...++...+..........+...
T Consensus        60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~------s---~~~l~~~~~l~gi~~a~~~p~~~  130 (1140)
T PRK06814         60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLN------S---VPLLFAALFLMGIHSALFGPIKY  130 (1140)
T ss_pred             HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHh------h---HHHHHHHHHHHHHHHHhhchHHH
Confidence            44444678889999999999999975332222211111111111111      0   11222223333333444567778


Q ss_pred             hcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          220 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      ++.++++|.+.|+.+.|+......++..+++.+-..+....++...| +..++..+.++++.+++|+++
T Consensus       131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            89999999999999999999999999999988888777777776666 333333333344455666653

>TIGR00897 2A0118 polyol permease family

Probab=98.98  E-value=2.2e-08  Score=90.18  Aligned_cols=140  Identities=10%  Similarity=-0.062  Sum_probs=78.7

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .+.+.++++.+.+..+.+... ........++.++.|.++||+|||+.+..+.....++....... ... .   ...  
T Consensus        34 ~~~~~~~~~~g~s~~~~g~~~-~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-~~~-~---~~~--  105 (402)
T TIGR00897        34 GWLSPFLKALGLSPQQSASAF-TLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF-GLG-H---ANY--  105 (402)
T ss_pred             HhHHHHHHHhCCCHHHhHHHH-HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-hcc-C---ccH--
Confidence            345666788888766655544 45555678999999999999999998876655544443322111 110 0   011  


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcchhH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN-LIVAQTFLTVAELVGTGAT  265 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~-~~~~~~~~~~~~~~g~~~~  265 (320)
                      +..++...+ .........+....+..+.+|++.|+++.|+......++. .+++.+...+.+..|+...
T Consensus       106 ~~l~~~~~i-~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~  174 (402)
T TIGR00897       106 PLILLFYGI-RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNT  174 (402)
T ss_pred             HHHHHHHHH-HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence            111111111 1111111122233456688999999999999887777764 3454443344444554333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.98  E-value=2.3e-09  Score=94.28  Aligned_cols=126  Identities=24%  Similarity=0.336  Sum_probs=73.3

Q ss_pred             eeeehHHH-HHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          115 VMYYSPTI-VQMAGFQ-SNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       115 ~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ...+.|.+ .+..+.+ ...... ..........++.++.++++||+++|+..........+....+.......     +
T Consensus       225 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  298 (352)
T PF07690_consen  225 FSFFLPLYLQEVLGFSGPSQAGL-LFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSS-----S  298 (352)
T ss_dssp             HHHHHHHHCCHHHHCCTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHC-----H
T ss_pred             hhcccchhhhhccCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhh-----h
Confidence            44556665 5566776 233332 23344455677789999999999987765544433333332221111110     0


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA  250 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~  250 (320)
                      .   ........+. .+......+....+..|.+|++.|+++.|+.+....+++.++|
T Consensus       299 ~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  299 P---VWLIIALFLI-GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             H---HHHHHHHHHH-HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            0   1111111121 1222223556678889999999999999999999988887764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.97  E-value=2.1e-07  Score=84.14  Aligned_cols=117  Identities=19%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             CchHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .+||+.|++.++.+++.++. ++++||+++-    ++++...+                       +.     ..+++++
T Consensus       167 ~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~----~~~~~~~~-----------------------~~-----~~~~~~l  214 (413)
T PRK15403        167 VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR----GAVPFSAK-----------------------SV-----LRDFRNV  214 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc----cCCCCChH-----------------------HH-----HHHHHHH
Confidence            37999999999888876654 5578998631    11000000                       00     0123456


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLI-DHFGRKK  163 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~-Dr~grR~  163 (320)
                      +++|+.+...+.....     ...+.....+.|.++++. |.+.... .....+..+...+++.+.+.+. |+.++|.
T Consensus       215 l~~~~~~~~~l~~~~~-----~~~~~~~~~~~P~~l~~~~g~s~~~~-gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~  286 (413)
T PRK15403        215 FRNRLFLTGAATLSLS-----YIPMMSWVAVSPVILIDAGGMTTSQF-AWTQVPVFGAVIVANAIVARFVKDPTEPRF  286 (413)
T ss_pred             HcCHHHHHHHHHHHHH-----HHHHHHHHHhChHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence            7777776544432211     111222334567777765 6654443 3334444444566666666654 5544443

>TIGR00896 CynX cyanate transporter

Probab=98.96  E-value=1.8e-08  Score=89.06  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=85.5

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ch
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG-RK  162 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~g-rR  162 (320)
                      .++.++++..+...+... +.    ...+.....+.|.++++.|.+...... ......+..+++.++.|++.||++ ||
T Consensus       190 ~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~lp~~~~~~g~~~~~~g~-~~~~~~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       190 PVRIWRSPLAWQVTVFFG-LQ----SGLYYSLIGWLPAILISHGASAATAGS-LLALMQLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             CchhhcCHhHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHhHHHHHhhhccch
Confidence            345667666554332211 11    111222334678888887776555444 344455668899999999999995 55


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhccc-ccCCccchhhhHHHHHHH
Q 020863          163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS-EVYPEQYRGICGGMSATV  241 (320)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ElfP~~~R~~~~gi~~~~  241 (320)
                      +....+.....++...+.+.  ..     +..  +.   ...++. .......+....... +..+++.++...|+.+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~--~~-----~~~--~~---~~~l~g-~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  330 (355)
T TIGR00896       264 GIVAVLAVLQLVGLCGLLFA--PM-----HGL--WA---WALVLG-LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSI  330 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--hh-----hHH--HH---HHHHHH-HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            55544444444433332221  10     000  11   111111 111111223233333 334556778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 020863          242 NWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g  261 (320)
                      +.+++.+++.+...+.++.|
T Consensus       331 ~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       331 GYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            88888888888887777665

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.96  E-value=3.2e-08  Score=85.71  Aligned_cols=137  Identities=14%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             eeehHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          116 MYYSPTIVQM---AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       116 ~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ..|.+.++++   .|.+....+.. ........++|.+++++++||+|+|+.+..+..++.++....  .  ..+.    
T Consensus       160 ~~w~~~yl~~~~~~g~s~~~a~~~-~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~--~--~~~~----  230 (310)
T TIGR01272       160 GSFLVNFLSDPHALGLPEDQAAHF-TAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGA--A--LTHG----  230 (310)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH--H--HcCC----
Confidence            3456666654   36655544444 444455578999999999999999887765544443332211  1  1111    


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLI  268 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  268 (320)
                      . .   ...++. ...++.....|.......+.+|.+ .+++.++. ..+.+|+.+.|.+...+.+..|...+|++
T Consensus       231 ~-~---~~~~~~-l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       231 Y-V---AMWFVL-ALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             H-H---HHHHHH-HHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            0 0   111111 122333344566566777877765 34566664 56778888888888878787776666553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.95  E-value=1.8e-08  Score=102.38  Aligned_cols=243  Identities=14%  Similarity=0.052  Sum_probs=119.6

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      .+||+.|++.++..++.++...++||++.-  .++...+.          +..            ++.    ...++.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------~~~------------~~~----~~~~~~~~  222 (1140)
T PRK06814        171 GNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR----------NII------------RST----ITLLKYAK  222 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc----------chH------------HHH----HHHHHHHh
Confidence            479999977777777666667777776521  00000000          000            000    01233455


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      +++.++...+........     ......+.|.++++ .|.+....+.. .....++.+++.++.|+++|+.++++....
T Consensus       223 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~-~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~  296 (1140)
T PRK06814        223 ADKRIWLAILGISWFWLV-----GAVVLSQLPLLAKETLGGDENVATLF-LAVFSVGVAVGSFLASKLSEGRITLLYVPI  296 (1140)
T ss_pred             cCchHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHcCCchHHHHHH-HHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence            666665544432222111     11122345665554 56655544443 344555678899999999988777665444


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCC---------cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSS---------GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS  238 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~  238 (320)
                      +.++..++.+.+.+...........         ....+...+...++..+ .....+...++..+..|++.||++.|+.
T Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~G~v~g~~  375 (1140)
T PRK06814        297 GALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAA-GGLYIVPLFAALQAWANPAHRARVIAAN  375 (1140)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHH-HHHhHHHHHHHHHhhCCcccceeeeHHH
Confidence            3333333222222110000000000         00011122222222221 2222233467888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhccc
Q 020863          239 ATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~pe  286 (320)
                      +..+.++..+++.+...+... .+....+++.+.+.++..+..+...|+
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAILILRLLPT  424 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            999888888877766655432 233334444444333333333344444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.95  E-value=2.3e-08  Score=86.93  Aligned_cols=154  Identities=21%  Similarity=0.179  Sum_probs=102.3

Q ss_pred             hHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 020863          119 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI  198 (320)
Q Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (320)
                      .+.+-++.+++..+...+..++ .+.+.+.-+.-|++.||+|-|++...+.+...+-.+.+.+....   .    .+...
T Consensus        37 ~~~i~~~~~LS~~q~~ll~aiP-il~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~---~----~~~~l  108 (417)
T COG2223          37 GVFIKSDFGLSEGQKGLLVAIP-ILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY---P----STWQL  108 (417)
T ss_pred             HhhhccccCCCHHHHHHHHHHH-HHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC---C----chHHH
Confidence            3455678888877766655554 45578888899999999999998876655443333333322211   1    11111


Q ss_pred             HHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHH
Q 020863          199 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG---TGATFLILAGIAVL  275 (320)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~  275 (320)
                      .+++  ++. ..+.+..++...++++.||++.+|++.|+.. .+|+|..+...+.|.+....|   ++.+..++....++
T Consensus       109 l~~g--ll~-G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v  184 (417)
T COG2223         109 LVIG--LLL-GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI  184 (417)
T ss_pred             HHHH--HHH-hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            2222  221 2233344555678899999999999999988 999999998888888888777   77777777666666


Q ss_pred             HHHHHHhhc
Q 020863          276 AVVFVILFV  284 (320)
Q Consensus       276 ~~~~~~~~~  284 (320)
                      ..+..++..
T Consensus       185 ~~v~~~~~~  193 (417)
T COG2223         185 AAVLAWLGM  193 (417)
T ss_pred             HHHHHHHHh
Confidence            666555554

>PRK09952 shikimate transporter; Provisional

Probab=98.94  E-value=4.5e-08  Score=89.11  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccc
Q 020863          145 NAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSE  224 (320)
Q Consensus       145 ~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  224 (320)
                      ..++.++.|+++||+|||+.+..+.....++.....+.    ++......+....++...+.......+..+....+.+|
T Consensus        77 ~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         77 RPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL----PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            55778889999999999999877665555544433221    11000000111122223333333333444555678899


Q ss_pred             cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          225 VYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE--------LVGTGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       225 lfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      .+|++.|+...+.......++..++......+..        ..||...|++.+...++. +......||++
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~  223 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA  223 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            9999999988777666555666555443333221        357777777655544332 22334467764

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.94  E-value=7.7e-08  Score=86.55  Aligned_cols=45  Identities=20%  Similarity=0.012  Sum_probs=37.7

Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV  260 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                      +....+..|..|++.|+++.|+.+....++..+++.+...+.+..
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            444577789999999999999999988889888888888877764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.94  E-value=7.8e-08  Score=88.94  Aligned_cols=153  Identities=16%  Similarity=0.118  Sum_probs=88.6

Q ss_pred             CcceeeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 020863          111 GINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSS  188 (320)
Q Consensus       111 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      +++.+..+.+.++ +..|.+..+...... ..........+++|+++|| +|||+.+..+.....++...+...  .  .
T Consensus        36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~-~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~--~--~  110 (500)
T PRK09584         36 GYYGLQGIMAVYLVKQLGMSEADSITLFS-SFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS--G--H  110 (500)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--c--c
Confidence            3444445556555 567776554333322 2222233445689999999 599998877766555444333211  1  0


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 020863          189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATF  266 (320)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~--R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  266 (320)
                          . . ....+...+. ........+....+.+|.||++.  |..+.++.+...++++.+++.+...+.+..||...|
T Consensus       111 ----~-~-~~l~~~~~l~-gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        111 ----D-A-GIVYMGMATI-AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             ----c-H-HHHHHHHHHH-HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence                0 0 1111111111 11111223444577899998653  345677777888899999988888888888888888


Q ss_pred             HHHHHHHHH
Q 020863          267 LILAGIAVL  275 (320)
Q Consensus       267 ~~~~~~~~~  275 (320)
                      .+.+....+
T Consensus       184 ~i~~i~~~i  192 (500)
T PRK09584        184 ALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHH
Confidence            775543333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.93  E-value=7.3e-08  Score=86.92  Aligned_cols=130  Identities=16%  Similarity=0.046  Sum_probs=80.6

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.+.+..+.+. ..........++++.+|++.||+|||+.+..+.....++........ ..+     . +.
T Consensus        24 ~l~~~~~~~~~~s~~~~g~-l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-~~~-----~-~~   95 (410)
T TIGR00885        24 PMVPQFQQAFTLTAFQAAL-VQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-EIM-----N-YT   95 (410)
T ss_pred             HHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-hhc-----c-HH
Confidence            4567788888887665544 44455566789999999999999999998877766555544332111 000     1 11


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTV  256 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~  256 (320)
                      . .+....+.....+ ...+....+..++.|++.|++..++.+....++..+++.+...+
T Consensus        96 ~-~l~~~~l~G~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        96 L-FLVGLFILTAGLG-FLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             H-HHHHHHHHHhhHH-HHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1111111111111 11122235667888999999999998888888888887766654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.93  E-value=5e-08  Score=99.37  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      ......+++.+++|+++||+|||+++..+....++..+...+.....      . + + .++...++.........+...
T Consensus        55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~------~-~-~-~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG------W-F-W-LAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc------c-H-H-HHHHHHHHHHHHHHhhchHHH
Confidence            33444678888999999999999988766544333333322221111      1 1 1 122222222233333445567


Q ss_pred             hcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          220 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL  259 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~  259 (320)
                      .+.+|.+|.+.|+++.|+......++..+++.+...+...
T Consensus       126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999988888888887776666554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=4e-08  Score=91.51  Aligned_cols=137  Identities=22%  Similarity=0.245  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcccc
Q 020863          136 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG  215 (320)
Q Consensus       136 ~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (320)
                      .......++..+|+++.|.++||+|||+++..+.....++.+...++-            .+...+..-++.+++..+..
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~------------~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP------------NYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHhhccchh
Confidence            334444555789999999999999999998887776666654433221            12234555566677777777


Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      .+.+.+..|+++++.|+.+..+ ....+.++.+++.....+..  +|...+++......+..++ +++.||++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            8888999999999999999888 66666666665554444443  5666666655555544443 45566763

>PRK10133 L-fucose transporter; Provisional

Probab=98.93  E-value=5.1e-08  Score=88.72  Aligned_cols=137  Identities=19%  Similarity=0.188  Sum_probs=76.0

Q ss_pred             HHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 020863          121 TIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA  199 (320)
Q Consensus       121 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (320)
                      ++.+ ..|.+....+. ...+..+.++++.++++++.||+|||+.+..+.....+.....  .. . ..    . ..   
T Consensus       284 ~l~~~~~g~s~~~ag~-~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~--~~-~-~~----~-~~---  350 (438)
T PRK10133        284 YAVEEIPGMTAGFAAN-YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS--AF-A-GG----H-VG---  350 (438)
T ss_pred             HHhhhcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH--HH-c-CC----h-HH---
Confidence            4345 35766554443 4445566688999999999999999998765544333222211  11 1 11    0 11   


Q ss_pred             HHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHH
Q 020863          200 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIA  273 (320)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  273 (320)
                      +..+.+ ..++.....|..+....|.+|.+ .+++.++.. ....++.+++.+...+.+..| ....|++.....
T Consensus       351 ~~~~~l-~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~  422 (438)
T PRK10133        351 LIALTL-CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            111111 12222334566667777888764 455666664 344566667776776667665 455555443333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.91  E-value=1.9e-07  Score=83.81  Aligned_cols=150  Identities=15%  Similarity=-0.003  Sum_probs=79.2

Q ss_pred             hHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH
Q 020863          119 SPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGW  197 (320)
Q Consensus       119 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (320)
                      .|.+.+ ..|.+.... ........+..++++++.+++.||.++|+....+.. ..+.  .+......       .  .+
T Consensus       228 ~~~~~~~~lg~s~~~~-G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~--~~~~~~~~-------~--~~  294 (393)
T PRK11195        228 VLAWAPVALGITLNQP-AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLV--VLLMALQH-------S--LL  294 (393)
T ss_pred             HHHHHHHHcCCChhHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHH--HHHHHHHh-------H--HH
Confidence            344444 346655443 334445555678888999999999888876655432 2111  11111110       0  11


Q ss_pred             HHHHHHHHHHHHHhccccccchhcccccCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          198 IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY-RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~-R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      ..+....+......... +.......|.-|.+. +|++.++.+...+++..++..+.. .....|....+.+.+...+++
T Consensus       295 ~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  372 (393)
T PRK11195        295 PAYPLLILIGALGGFFV-VPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS-LLVKLGVPVVAVIVGFGLLVA  372 (393)
T ss_pred             HHHHHHHHHHHhhhhhh-hhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHH
Confidence            11122212211111111 222344556656554 788999999888888887776665 345666656666554444445


Q ss_pred             HHHHHhh
Q 020863          277 VVFVILF  283 (320)
Q Consensus       277 ~~~~~~~  283 (320)
                      ..+.+.|
T Consensus       373 ~~~~~~~  379 (393)
T PRK11195        373 LAMALLW  379 (393)
T ss_pred             HHHHHHH
Confidence            4444444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.91  E-value=1.2e-07  Score=87.28  Aligned_cols=116  Identities=16%  Similarity=0.031  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      ...+..+++.++.++++||+|+|+....+.....++.+.+....... .   ...  +..++...+.. .......+..+
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~i~~~l~g-~~~~~~~~~~~  346 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA-P---HNA--LLIVIAGILLN-IGTALFWVLQV  346 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-c---hhH--HHHHHHHHHHH-HHHHHHHHHHH
Confidence            33345678888899999999999987765544343333322110011 1   111  11111111111 11122334556


Q ss_pred             hcccccCC-----ccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020863          220 TLNSEVYP-----EQYR--GICGGMSATVNWISNLIVAQTFLTVAELVGT  262 (320)
Q Consensus       220 ~~~~ElfP-----~~~R--~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~  262 (320)
                      ++.+|..+     +..|  |...|.......++..+++.+...+.+..|+
T Consensus       347 am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        347 IMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77888844     5554  3455666777777777777776666555443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.91  E-value=3.9e-08  Score=86.97  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=94.9

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cchHHHH-HHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKKLAL-SSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~-----grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      .-.|.+.++.|.+..+.+.... . ..... ..++.|.++||+     |||+..+ .+.....++...+.  +.. +  .
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~-~-~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~--~~~-~--~   80 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSL-V-GLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS--FLV-P--S   80 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHH-H-HHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH--cCC-c--c
Confidence            3457888999988766555432 2 22222 378999999998     8888643 33333322222221  111 1  0


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--------T  262 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g--------~  262 (320)
                       ...  + .+....+..........+...++.+|.+|++.|+.+.|+......++..+++.+...+....+        |
T Consensus        81 -~~l--~-~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w  156 (356)
T TIGR00901        81 -TDL--P-LLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW  156 (356)
T ss_pred             -hhH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence             111  1 111111111222222234456788999999999999999888888888888777766666666        7


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          263 GATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      ...|.+.+.+.++..+..++..||.+
T Consensus       157 r~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       157 GYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            77887777666665554444567754

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.90  E-value=7.2e-09  Score=91.82  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=64.4

Q ss_pred             eehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      .+.|.+++ ..+.+..+.... .....+.+.++.+++|+++||+|||+....+.....++...+...  .. ..  ..  
T Consensus       246 ~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~-~~--~~--  317 (366)
T TIGR00886       246 SIFAMFFKDQFGLSKVTAGAY-ASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLG--LV-SP--LS--  317 (366)
T ss_pred             HHHHHHHHHHcCCcHHHHHHH-HHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhc--CC-Cc--ch--
Confidence            44555555 457665444333 334455577889999999999999886655443333333222211  11 00  01  


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      .+.............+.+ .+..+.+.+|++| +.|+++.|+.+..++++
T Consensus       318 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       318 LAVFIVLFVALFFFSGAG-NGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHHhccc-cchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            111112222222222222 2345677889887 57999999887766554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.90  E-value=6.3e-08  Score=87.16  Aligned_cols=165  Identities=18%  Similarity=0.347  Sum_probs=100.3

Q ss_pred             CcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cchH-HHHHHhHHHHHHHHHHHHHHH
Q 020863          111 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKK-LALSSLAGVIISLVLLSWAFI  184 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~-----grR~-~~~~~~~~~~~~~~~~~~~~~  184 (320)
                      .+.....-.|.++++.|.+..+.+....+.. .  .+..++.|.++||+     |||+ ++..+.....++...+...  
T Consensus        14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~-~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~--   88 (402)
T PRK11902         14 PLALTSGTLQAWMTVEGLDIQTIGFFSLVGQ-A--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC--   88 (402)
T ss_pred             hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-H--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--
Confidence            3333444568899999998777655433322 2  47778999999999     8876 5555444444333332211  


Q ss_pred             hcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcch
Q 020863          185 SGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTG  263 (320)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~-~g~~  263 (320)
                      . ..   ...  + .+....+....+.....+...++.+|.+|++.|+++.++......++..+++.+...+.+. .||.
T Consensus        89 ~-~~---~~~--~-~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         89 P-PH---AAL--W-PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             C-cc---chH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            1 10   111  1 1111111112223233455568889999999999999998877778888877766666654 4788


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          264 ATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      ..|.+.+++.++..+ ..++.||++
T Consensus       162 ~~f~i~a~~~l~~~l-~~~~~~e~~  185 (402)
T PRK11902        162 NTYLLMAGLMLAGAL-TTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHH-HHHhcCCCc
Confidence            888877766655444 345667764

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.89  E-value=1.3e-07  Score=84.80  Aligned_cols=40  Identities=18%  Similarity=0.168  Sum_probs=28.3

Q ss_pred             cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 020863          215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT  255 (320)
Q Consensus       215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~  255 (320)
                      .+....+..|.+| +.++++.++.+....+++.+++.....
T Consensus       317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~  356 (394)
T PRK11652        317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM  356 (394)
T ss_pred             HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556678887 468889888888888888777665443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.89  E-value=2e-07  Score=83.45  Aligned_cols=189  Identities=15%  Similarity=0.170  Sum_probs=100.9

Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG-FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKK  163 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~  163 (320)
                      .+++|+|+....++....+....     .....|.+.++++.| .+... .........++.++.....+++..|+|-|+
T Consensus       201 ~~llk~~~~~~Fll~~~l~~~~~-----~~~~~f~~~yl~~~gg~~~~~-~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~  274 (400)
T PF03825_consen  201 LKLLKNPRFLVFLLAAFLIGISH-----AAYYTFFSIYLQELGGYSGST-IGILWALGVVAEIPFFFFSGRFLKRFGIKW  274 (400)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            46788887765544433322211     222345566788877 43333 233333444556777788899999999998


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhH-HHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          164 LALSSLAGVIISLVLLSWAFISGSSASSSGVYGW-IAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      ++..+....++=...+.    ....   +....+ +.++...+....++. .......|..+..|++.|++++|+.+...
T Consensus       275 ll~~a~~~~~vR~~l~a----~~~~---~~~~~~~~~~l~q~lhG~tf~~-~~~a~~~yi~~~~p~~~~at~Q~l~~~~~  346 (400)
T PF03825_consen  275 LLLLALVAYAVRWLLYA----YFSD---PWPFIVALQLLGQLLHGLTFGL-FHAASVRYIDRIAPPELRATAQGLYSALS  346 (400)
T ss_pred             HHHHHHHHHHHHHHHHH----HhcC---CcHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence            87655443332222211    1100   011111 111111111211111 12233478899999999999999977654


Q ss_pred             H-HHHHHHHHHHHHHHHHhcch------hHHHHHHHHHHHHHHHHHhhcccC
Q 020863          243 W-ISNLIVAQTFLTVAELVGTG------ATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       243 ~-~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      . +++.+++.+-..+.+..|..      ..+.+.+++.++..++..++.+|+
T Consensus       347 ~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  347 FGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            3 56666776667676665532      334455555555555444455554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.88  E-value=4.4e-07  Score=84.12  Aligned_cols=109  Identities=12%  Similarity=0.134  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccc
Q 020863          136 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGM  214 (320)
Q Consensus       136 ~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (320)
                      +.+.+......++.++.|.+..+++|-|..+ .+.....+   .... .........+.......+.      .+...+.
T Consensus       353 ~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta---~~Ga-ma~~~~~n~~~~i~~~~l~------g~giG~~  422 (599)
T PF06609_consen  353 WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTA---FCGA-MAAVRPDNKNAAIAFLVLA------GFGIGGI  422 (599)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHH---HHHH-HHHccCCCcchHHHHHHHH------HHhHHHH
Confidence            3444555555677788889998888766553 22222211   1111 1111111111111111111      1111111


Q ss_pred             cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 020863          215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL  254 (320)
Q Consensus       215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~  254 (320)
                      .....+...-..|++.-+++.|+..++-.+|+.++..++.
T Consensus       423 ~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  423 LVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            2233345555678888899988888877777766555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09848 glucuronide transporter; Provisional

Probab=98.88  E-value=6.1e-08  Score=88.55  Aligned_cols=162  Identities=12%  Similarity=0.062  Sum_probs=82.2

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK  162 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR  162 (320)
                      +++++++|.++...+.........     .......|++.+. .+. +...............+++.++.+++.||+|+|
T Consensus       221 ~~~l~~n~~f~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~  294 (448)
T PRK09848        221 LQTLKRNRPLFMLCIGALCVLIST-----FAVSASSLFYVRYVLND-TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK  294 (448)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHH-----HHHhhhheeeEeeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            445777777765544332221111     1111123333332 333 223333323332344567888899999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCcc-------chhhhH
Q 020863          163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ-------YRGICG  235 (320)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~-------~R~~~~  235 (320)
                      +.+..+.....++.+.+.+   ...    ...  +.......+... ......+..+++.+|..|.+       .+|...
T Consensus       295 ~~~~~g~~~~~i~~~~~~~---~~~----~~~--~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~  364 (448)
T PRK09848        295 NTFLIGALLGTCGYLLFFW---VSV----WSL--PVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTY  364 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHH---cCc----hhH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence            9887766554444333221   110    011  111111111111 11122344556667776543       457788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          236 GMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       236 gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      |+.+....++..+++.+...+.+..|
T Consensus       365 ~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        365 SLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888888888777766655444

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=5e-07  Score=82.05  Aligned_cols=163  Identities=18%  Similarity=0.237  Sum_probs=91.3

Q ss_pred             chhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020863           83 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK  162 (320)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR  162 (320)
                      ..++++++|..+..+.....     ++.+......+.+++.+..-.+....+. ......+...++.++.++++||+|+|
T Consensus       217 ~~~~~~~nr~~~~l~~~~~~-----~~~~~~~~~~~~~y~~~~vl~~~~~~~~-~~~~~~~~~~v~~~~~~~l~~r~gk~  290 (428)
T PF13347_consen  217 SLRSLFRNRPFRILLLAFFL-----QWLAFALMNTFLPYYFTYVLGNEGLISI-FMLIFFVASIVGSPLWGRLSKRFGKK  290 (428)
T ss_pred             chhhhcccchHHHHHHHHHH-----HHhhhhhhhhHHHHHHHHHhcCchhhHH-HHHHHHHHHHHHHHHHHHHHHHccce
Confidence            45677788776654443221     1222233333345555543322233233 33344555788899999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCcc-------chhhhH
Q 020863          163 KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ-------YRGICG  235 (320)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~-------~R~~~~  235 (320)
                      +....+....+++...+.+... .+     .   +...+ ................+++.+|+.+.+       ..|...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~-~~-----~---~~~~i-~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~  360 (428)
T PF13347_consen  291 KVYIIGLLLAALGFLLLFFLGP-GS-----P---WLVLI-LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF  360 (428)
T ss_pred             eehhhhHHHHHHHHHHHHHHHh-hh-----H---HHHHH-HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence            9887776665555544333211 00     1   11222 222222223344567788888988632       235667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          236 GMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       236 gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      |+.+....++..+++.+...+.+..|
T Consensus       361 s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  361 SVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            77777777888787777666655544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.86  E-value=1.9e-07  Score=84.21  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcc
Q 020863          143 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN  222 (320)
Q Consensus       143 ~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (320)
                      ....+|.++++++.||+++|+.+......+.++......    ...    . .   ....+.+ ..++..++.|..+...
T Consensus       280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~----~~~----~-~---~~~~l~~-~glf~s~~fp~i~sl~  346 (410)
T TIGR00885       280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF----AGG----H-V---GLYCLTL-CSAFMSLMFPTIYGIA  346 (410)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH----cCC----h-H---HHHHHHH-HHHHHHHHHHHHHHHH
Confidence            446899999999999999999876554444433332221    111    0 1   1111111 1223334457778888


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020863          223 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV  260 (320)
Q Consensus       223 ~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~  260 (320)
                      .+..+++.+..+.++....  +|+.+.|.+...+.+..
T Consensus       347 ~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       347 LKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence            8999888776566665544  77777788877777743

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.85  E-value=9.8e-08  Score=88.12  Aligned_cols=159  Identities=16%  Similarity=0.282  Sum_probs=96.5

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cchHH-HHHHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-----GRKKL-ALSSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~-----grR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      ...|..+++.|.+..+.+.... ...  ..++.++.+.++||+     |||+. +..+.....++...+..  .. +  .
T Consensus        33 ~~l~~~l~~~g~~~~~ig~~~~-~~~--~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~--~~-~--~  104 (491)
T PRK11010         33 GTLQAWMTVENIDLKTIGFFSL-VGQ--AYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF--LE-P--G  104 (491)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHH--HHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH--cC-C--c
Confidence            3456778888877655444321 211  236788999999999     99885 44443333333322221  11 1  0


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE-LVGTGATFLIL  269 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  269 (320)
                       .. ..+  +....+...++.....+...++.+|.+|++.|+++.|+.....+++..+++.....+.+ ..||...|.+.
T Consensus       105 -~~-l~~--l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~  180 (491)
T PRK11010        105 -TQ-LRW--LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM  180 (491)
T ss_pred             -ch-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence             11 111  11111112222223344556888999999999999999998888888888777776666 46888888887


Q ss_pred             HHHHHHHHHHHHhhcccCC
Q 020863          270 AGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       270 ~~~~~~~~~~~~~~~pet~  288 (320)
                      +++.++..+.. ++.||+.
T Consensus       181 a~l~ll~~l~~-~~~~e~~  198 (491)
T PRK11010        181 AALLIPCIIAT-LLAPEPT  198 (491)
T ss_pred             HHHHHHHHHHH-HhcCCCc
Confidence            77766654443 4567764

>TIGR00788 fbt folate/biopterin transporter

Probab=98.84  E-value=1.8e-07  Score=85.88  Aligned_cols=132  Identities=9%  Similarity=-0.063  Sum_probs=77.2

Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhc--CCCCCCcchhHHHHHH
Q 020863          125 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG--SSASSSGVYGWIAVIG  202 (320)
Q Consensus       125 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  202 (320)
                      ..|.+....+.. ..+..+..+++..+.+.+.+|++.|+++..+.....++...........  .....+..   .....
T Consensus       282 ~lG~s~~~~G~~-~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~---~~~~~  357 (468)
T TIGR00788       282 CLPGGPSFSGMS-KVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV---FVLGD  357 (468)
T ss_pred             cCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee---eeeeh
Confidence            467766654443 3445566788888888888999999887766554444332211100000  00000111   11111


Q ss_pred             HHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          203 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      ..+..........+. ..+..++.|++.+++..|+.+++.+++..+++..-..+.+..|
T Consensus       358 ~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       358 SIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             hHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            111122222222333 5788899999999999999999999999888876666666666

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.83  E-value=2.9e-07  Score=82.58  Aligned_cols=156  Identities=14%  Similarity=0.130  Sum_probs=85.6

Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 020863          121 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASSSGVYGWIA  199 (320)
Q Consensus       121 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (320)
                      .+.++.+.+..+.+...+.........+.+.+++ +||+|||+.++ .+.....+.....  .+..       . +..+.
T Consensus        41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~-------~-~~~l~  109 (393)
T PRK15011         41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF--AWNR-------N-YFVLL  109 (393)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH--HHhh-------H-HHHHH
Confidence            3455678776655444333333334456666667 99999998643 3322222222111  1110       0 11111


Q ss_pred             HHHHHHHHHHHhccccccchhcccccCCccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 020863          200 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRG--ICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAV  277 (320)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~--~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  277 (320)
                      +... +. ........+....+..|..|.+.|.  ...++.+....++..+++.+...+.+..||...|.+.+...++..
T Consensus       110 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~  187 (393)
T PRK15011        110 FVGV-FL-SSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCG  187 (393)
T ss_pred             HHHH-HH-HHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            1111 11 1112223344455666766665553  233566666778888888777777777899888888777776666


Q ss_pred             HHHHhhcccCCC
Q 020863          278 VFVILFVPETQG  289 (320)
Q Consensus       278 ~~~~~~~pet~g  289 (320)
                      +..++++||.+.
T Consensus       188 ~~~~~~~~~~~~  199 (393)
T PRK15011        188 VMVWLFLPSMRK  199 (393)
T ss_pred             HHHHhhcCccCC
Confidence            666677887643

>TIGR00896 CynX cyanate transporter

Probab=98.82  E-value=2.5e-07  Score=81.74  Aligned_cols=162  Identities=19%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             hcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 020863          109 FTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS  188 (320)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (320)
                      ..++.......|.+.++.+.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++....   . . + 
T Consensus        13 ~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~-~-~-   85 (355)
T TIGR00896        13 RPALTSVGPLLPQIRSALGMSFSVAGLLTA-LPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR---S-A-P-   85 (355)
T ss_pred             cCccccCcccHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH---H-h-c-
Confidence            334445556778899999988766555444 4455578999999999999999998876654433332221   1 1 1 


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHH
Q 020863          189 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG--TGATF  266 (320)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~  266 (320)
                          ..  +..++...+.....+ ...+....+..|.+| +.|+++.|+.+....++..+++.+...+.+..+  |...|
T Consensus        86 ----~~--~~l~~~~~~~g~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f  157 (355)
T TIGR00896        86 ----GT--ALLFAGTALIGVGIA-IINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL  157 (355)
T ss_pred             ----cH--HHHHHHHHHHHHHHH-HHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence                11  111111111111111 112223345678887 569999999888877888777776666555432  55555


Q ss_pred             HHHHHHHHHHHHHHHhhcccCC
Q 020863          267 LILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      ...++..++..   ..+.|+.+
T Consensus       158 ~~~~~~~~~~~---~~~~~~~~  176 (355)
T TIGR00896       158 AWWALPALLAL---LAWIPQVR  176 (355)
T ss_pred             HHHHHHHHHHH---HHHhhhhc
Confidence            55444333322   23455544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.82  E-value=2.7e-07  Score=82.42  Aligned_cols=133  Identities=13%  Similarity=0.060  Sum_probs=81.3

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      .....+.|.+.++.|.+..+.+... ........++.++.|+++||+|||+.+..+.....++.......    +     
T Consensus        23 ~~~~~~lp~~~~~~~~s~~~~G~~~-s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~----~-----   92 (381)
T PRK03633         23 AVLNTLVPLWLAQEHLPTWQVGVVS-SSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM----V-----   92 (381)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-----
Confidence            3444567888888888765554444 44455578899999999999999998877665554444332221    1     


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE  258 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~  258 (320)
                      . + +..++. .+..........+.......+..|++.|+++.|.......++..+++.+...+.+
T Consensus        93 ~-~-~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         93 G-F-WSWLAW-RFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             c-H-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            1 1 111111 1221221111223223344577888889999999888888888877776655443

>PRK09669 putative symporter YagG; Provisional

Probab=98.81  E-value=3.5e-07  Score=83.50  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhc
Q 020863          142 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL  221 (320)
Q Consensus       142 ~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (320)
                      .+..+++.++.++++||+|+|+....+.....++...+  .+ .. .   +..  +...+...+ .........+..+++
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~--~~-~~-~---~~~--~~~~~~~~i-~g~~~~~~~~~~~am  343 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALI--FF-IP-P---SNV--WLIFALNIL-FNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HH-hC-c---chH--HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34456788888999999999998765544333222111  11 11 1   111  111111111 122222334566788


Q ss_pred             ccccCCc-------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020863          222 NSEVYPE-------QYRGICGGMSATVNWISNLIVAQTFLTVAELVGT  262 (320)
Q Consensus       222 ~~ElfP~-------~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~  262 (320)
                      .+|..+.       +..|...|+......++..+++.+...+.+..|+
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8888752       2234456666677778887777777666655543

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.80  E-value=8.5e-07  Score=79.49  Aligned_cols=155  Identities=10%  Similarity=0.054  Sum_probs=96.3

Q ss_pred             eehHHHHHHhCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPTIVQMAGFQSNQ-LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      +-.|.+.++.|++..+ ........ .....+..+.+|+++||+|-|+++..+.+.-.+...++.+.-.           
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F-~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S-----------  114 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVL-PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS-----------  114 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHH-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            4457778888988766 44444433 4447888999999999999999887666555544444433211           


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH---HHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFL---ILAGI  272 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~  272 (320)
                       ...+...-++.+.+ .++....+.++...+|++.|+++.|+.++...+|.++++.+... ....||.....   +-.+.
T Consensus       115 -l~~L~i~R~llGva-EA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s  191 (511)
T TIGR00806       115 -VWHMQLMEVFYSVT-MAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVF  191 (511)
T ss_pred             -HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHH
Confidence             11122221111111 12222556788899999999999999999999999988887776 44556544322   22233


Q ss_pred             HHHHHHHHHhhcccC
Q 020863          273 AVLAVVFVILFVPET  287 (320)
Q Consensus       273 ~~~~~~~~~~~~pet  287 (320)
                      ..++. +..+++|..
T Consensus       192 ~~~a~-~~a~~LP~~  205 (511)
T TIGR00806       192 MTFSV-FLALFLKRP  205 (511)
T ss_pred             HHHHH-HHHHhCCCC
Confidence            33333 344667743

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.78  E-value=4.5e-07  Score=82.41  Aligned_cols=166  Identities=17%  Similarity=0.196  Sum_probs=110.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 020863          127 GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY  206 (320)
Q Consensus       127 g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (320)
                      ..+..+.+.+.+.... +.+++.+.+|+++||+|-|+++..+.+...++.+++.++.....         + .++..-++
T Consensus        69 ~ws~~~k~~i~ss~~~-G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~---------~-~~~~~R~l  137 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFW-GYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF---------Y-LLLVLRFL  137 (466)
T ss_pred             cCCHHHHHHHHHHHHH-HHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc---------h-hhHHHHHH
Confidence            3344444554444433 36788888999999999999988777766666665554432211         1 23334444


Q ss_pred             HHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhc-
Q 020863          207 IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL-VGTGATFLILAGIAVLAVVFVILFV-  284 (320)
Q Consensus       207 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-  284 (320)
                      ++.......+....+.+.-.|++.|++..++..+...++.+++..+-..+.+. .||...|++.+.+.++-.++.+++. 
T Consensus       138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            44433344566667888999999999999999988889988887777777777 8999999998888776655433332 


Q ss_pred             --cc-CCCCCHHHHHHHHhccc
Q 020863          285 --PE-TQGLTFLEVEQMWKERA  303 (320)
Q Consensus       285 --pe-t~g~~~~~~~~~~~~~~  303 (320)
                        |+ .+..+.+|.+..-+++.
T Consensus       218 d~P~~h~~is~~El~~I~~~k~  239 (466)
T KOG2532|consen  218 DSPSKHPNISEKELKYIEKGKS  239 (466)
T ss_pred             CCcccCCCCCHHHHHHHHhccc
Confidence              33 34445566555555544

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.78  E-value=2.9e-07  Score=83.34  Aligned_cols=160  Identities=13%  Similarity=0.111  Sum_probs=79.2

Q ss_pred             eehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      .+.|.++++ .|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....+........ .....      .
T Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s-~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~------~  102 (420)
T PRK09528         31 SFFPIWLHDINGLSGTDTGIIFS-ANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY-VFAPL------L  102 (420)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-HHHHH------H
Confidence            344555554 7887666554444 4555678899999999999999998765433332222211110 00000      0


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCC--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYP--EQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP--~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                      .........+.......+.... .....+..+  .+.|+...|.....+.++..+++.+...+.+ .++...|++.+...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~  180 (420)
T PRK09528        103 QYNILLGAIVGGIYLGFGFLAG-AGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSA  180 (420)
T ss_pred             HHHHHHHHHHHHHHhhhhhccc-hhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHH
Confidence            0000111110011111111111 111122222  2235556677777777777777776555544 46667777766665


Q ss_pred             HHHHHHHHhhccc
Q 020863          274 VLAVVFVILFVPE  286 (320)
Q Consensus       274 ~~~~~~~~~~~pe  286 (320)
                      ++..+..++..||
T Consensus       181 ~~~~~~~~~~~~~  193 (420)
T PRK09528        181 LILLVLLFFAKPD  193 (420)
T ss_pred             HHHHHHHhccccc
Confidence            5555544444444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.78  E-value=2.8e-07  Score=85.13  Aligned_cols=130  Identities=16%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhc
Q 020863          142 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL  221 (320)
Q Consensus       142 ~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (320)
                      ..-.++.++++|.++||++||++++.+-....+....+.+.......      ..+. ++.+.+.......-..|.-.++
T Consensus        55 ~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~------~~~~-Ll~~~fl~g~~~a~~~PA~~A~  127 (524)
T PF05977_consen   55 TLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL------SPWL-LLILTFLLGIGSAFFNPAWQAI  127 (524)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC------CHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            33356778889999999999999887766555444444333222110      1121 1222222222222234566788


Q ss_pred             ccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 020863          222 NSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       222 ~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  278 (320)
                      .+|+.|.+....+.++.....++...+|+.+-..+....|...+|.+-+...++..+
T Consensus       128 ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~  184 (524)
T PF05977_consen  128 IPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL  184 (524)
T ss_pred             HHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888999988888888888888777777777766677655444444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10054 putative transporter; Provisional

Probab=98.75  E-value=2.1e-07  Score=83.57  Aligned_cols=117  Identities=14%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccC
Q 020863          147 VGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY  226 (320)
Q Consensus       147 ~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf  226 (320)
                      +.....+++.||.++|+.+..+.....+....+...   ..     ..  +...+....+... .....+....+..+..
T Consensus       259 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~-----~~--~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~  327 (395)
T PRK10054        259 SLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS---GN-----SL--LLWGMSAAVFTVG-EIIYAPGEYMLIDHIA  327 (395)
T ss_pred             eehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc---ch-----HH--HHHHHHHHHHHHH-HHHHHhhHHHHHHHhC
Confidence            345667899999999987765544333333222111   00     11  1111111111111 1122344456777889


Q ss_pred             CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 020863          227 PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL  275 (320)
Q Consensus       227 P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  275 (320)
                      |++.|+++.|..+ .++++..+++.....+.++.|....|.+.+.+..+
T Consensus       328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            9999998887644 66688888998888888888766666554444433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.74  E-value=3.2e-07  Score=81.81  Aligned_cols=137  Identities=23%  Similarity=0.219  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhccccc
Q 020863          146 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV  225 (320)
Q Consensus       146 ~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El  225 (320)
                      .++.++.|+++||+|||+.+..+.....++.......    ++......+....+....+..........+....+.+|.
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  124 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL----PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY  124 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC----CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence            4578899999999999998877665555444333221    110000000011112222222222223334456788999


Q ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcchhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          226 YPEQYRGICGGMSATVNWISNLIVAQTFLTVAE--------LVGTGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       226 fP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      +|.+.|+...++......++..+++.+...+..        ..+|...|.+.+.+.+++. +.....||+
T Consensus       125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~  193 (394)
T TIGR00883       125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEET  193 (394)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence            999999999988887777777777665443322        3456666665544444332 233445665

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.73  E-value=3.4e-07  Score=79.89  Aligned_cols=166  Identities=19%  Similarity=0.294  Sum_probs=103.7

Q ss_pred             CcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 020863          111 GINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSA  189 (320)
Q Consensus       111 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
                      |.+.+..+...+-. ..|.+..+. ....+.....+++|++++|++.||+|-|+++..+.+...+..+  ...+....  
T Consensus       267 Gv~til~~~~~fg~~~~gls~~~l-ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~--~~~~~~~~--  341 (438)
T COG2270         267 GVNTILAMGGVFGAADLGLSSTEL-LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL--YLIFLEGE--  341 (438)
T ss_pred             hHHHHHHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH--HHHHcccc--
Confidence            44444444444444 667766554 3344455566789999999999999999887765543332222  11111110  


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHH
Q 020863          190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLI  268 (320)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~  268 (320)
                           .   ......++...+..+..+..-.|..++.|++.-+...|+.+..++..+++++.......+.+| ....+..
T Consensus       342 -----~---~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~  413 (438)
T COG2270         342 -----L---DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS  413 (438)
T ss_pred             -----H---HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence                 1   111122222223333445556788999999999999999999999999999999988887766 3445555


Q ss_pred             HHHHHHHHHHHHHhhcccCCCC
Q 020863          269 LAGIAVLAVVFVILFVPETQGL  290 (320)
Q Consensus       269 ~~~~~~~~~~~~~~~~pet~g~  290 (320)
                      ++.+..++.+ .+...|+.+.+
T Consensus       414 i~vll~iGl~-~L~~v~~~~~~  434 (438)
T COG2270         414 IIVLLLIGLL-LLLRVKVPGRR  434 (438)
T ss_pred             HHHHHHhhHh-hEEeecCCCCc
Confidence            5555555554 34556655433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.73  E-value=9.3e-07  Score=75.70  Aligned_cols=218  Identities=22%  Similarity=0.236  Sum_probs=124.3

Q ss_pred             CchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863            9 GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      ++||....+=+.++++.++.|         +.+..|+ +..                          ....+..+...+|
T Consensus       162 ~gW~~aL~~WAl~allAl~~W---------lPq~~r~-~~~--------------------------~~~~~~~~~~~vw  205 (395)
T COG2807         162 GGWRGALGFWALLALLALLIW---------LPQALRE-QAA--------------------------SIATKLVSVRKVW  205 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH---------hhhcccc-ccc--------------------------ccccccccccccc
Confidence            579999999999999988884         3221111 000                          0011112234578


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALS  167 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~  167 (320)
                      ++|..|...+.    +.+++ ..+|.+.-|+|.++.+.|.+..+.....+ .....+.+.++..-.+.+| -++|+..+.
T Consensus       206 ~~~~aW~vtLf----mGlqS-~~~Y~~~~WLP~ili~~G~sa~~aG~lls-l~~l~~~~~~ll~P~la~R~~n~r~~~~~  279 (395)
T COG2807         206 RSPLAWQVTLF----MGLQS-LLYYIVIGWLPAILIDRGLSAAEAGSLLS-LMQLAQLPTALLIPLLARRSKNQRPLVVL  279 (395)
T ss_pred             cCchhHHHHHH----HHhhH-HHHHHHHHHHHHHHHHcCCCHHHhhhHHH-HHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            88877765443    23333 34556667899999999998766554444 4455588999999999996 456665544


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhccccc-CCccchhhhHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEV-YPEQYRGICGGMSATVNWISN  246 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El-fP~~~R~~~~gi~~~~~~~~~  246 (320)
                      ....+.+....+.+.  ..+     ....|..+++..      ..+..++....+..= -.++.-+..+|++..++.+.+
T Consensus       280 ~~~~~l~G~~G~~~~--P~~-----~~~lw~~llG~G------~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllA  346 (395)
T COG2807         280 ALLLMLVGLVGLLLA--PGQ-----LPILWALLLGLG------QGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLA  346 (395)
T ss_pred             HHHHHHHHHHHHHHh--hhh-----HHHHHHHHHhCc------cchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHH
Confidence            333333333332221  111     111121111111      111122222233222 234455667888899999999


Q ss_pred             HHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHH
Q 020863          247 LIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVI  281 (320)
Q Consensus       247 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~  281 (320)
                      .++|.++..+-+..| |......++.+.++..+..+
T Consensus       347 a~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         347 AFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            999999999988877 55555555555554444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.72  E-value=8.9e-07  Score=79.54  Aligned_cols=163  Identities=12%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             eehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          117 YYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       117 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      .+.|.+++ +.|.+..+.+.. .........++.+..|+++||+|||+.+..+.....+........ ..... .  ...
T Consensus        23 ~~~~~~~~~~~g~s~~~~g~~-~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~   97 (396)
T TIGR00882        23 PFFPIWLHDVNGLSKTDTGIV-FSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY-VFGPL-L--QSN   97 (396)
T ss_pred             HHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HhhhH-H--HHH
Confidence            34455544 567766555444 445555678899999999999999998765544333222221111 00000 0  000


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVL  275 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  275 (320)
                      .........+..........+....+..|.-+.  ++...|.....+.++..+++.+-..+. ..++...|.+.+.+.++
T Consensus        98 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~  174 (396)
T TIGR00882        98 ILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALI  174 (396)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHH
Confidence            011111111111111111122222333343222  233445555666677666666544333 34777788777666666


Q ss_pred             HHHHHHhhcccC
Q 020863          276 AVVFVILFVPET  287 (320)
Q Consensus       276 ~~~~~~~~~pet  287 (320)
                      ..++.+...||.
T Consensus       175 ~~~~~~~~~~~~  186 (396)
T TIGR00882       175 LMLLLMFAKPKA  186 (396)
T ss_pred             HHHHHHHhCCCC
Confidence            555444445553

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.72  E-value=4.9e-07  Score=82.29  Aligned_cols=171  Identities=16%  Similarity=0.130  Sum_probs=93.3

Q ss_pred             eeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchHHHHHH-hHHHHHHHHHHHHHHHhc----
Q 020863          116 MYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID----HFGRKKLALSS-LAGVIISLVLLSWAFISG----  186 (320)
Q Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~D----r~grR~~~~~~-~~~~~~~~~~~~~~~~~~----  186 (320)
                      ..+.+.+++..|.+.... ........+.+++..++.|+++|    |+|||+.++.. .....++...+.+.....    
T Consensus        24 ~~~l~~yl~~lg~~~~~~-~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~  102 (477)
T TIGR01301        24 LSLLTPYVQELGIPHAWA-SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFG  102 (477)
T ss_pred             HHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcc
Confidence            345555778888865444 33444455567888999999999    59999987653 333333333332211000    


Q ss_pred             CCCCC-Ccchh-HHHHHHHHHHHHHHhccccccchhcccccCCccch--hhhHHHHHHHHHHHHHHHHHHHHHH--HHHh
Q 020863          187 SSASS-SGVYG-WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYR--GICGGMSATVNWISNLIVAQTFLTV--AELV  260 (320)
Q Consensus       187 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R--~~~~gi~~~~~~~~~~~~~~~~~~~--~~~~  260 (320)
                      ..... ..... +..++++.+..........+ .-++.+|++|++.|  +.+.++......+|++++..+....  ....
T Consensus       103 ~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~  181 (477)
T TIGR01301       103 DNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF  181 (477)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence            00000 00111 12222222222222222222 34788999999876  4577776666677776665543321  1111


Q ss_pred             -------------cchhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          261 -------------GTGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       261 -------------g~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                                   +....|++-+.+.+++..+..+..||..
T Consensus       182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                         2345677767777777777778888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.72  E-value=1.1e-07  Score=90.23  Aligned_cols=172  Identities=16%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcC-------
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGS-------  187 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~-------  187 (320)
                      ...-.+++.+.+++++.+.+.+.+ ...+..+++.++.+++.||.|||+++..+.+..+++.++..+......       
T Consensus        52 ~~~~l~~iek~F~lss~~~G~i~s-~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~  130 (633)
T TIGR00805        52 VNSSLTTIERRFKLSTSSSGLING-SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT  130 (633)
T ss_pred             HHhhchhhhhhhCCCCCcceeeee-hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence            334457788888988776554443 445557788899999999999999887777666666555443210000       


Q ss_pred             -------C---------C----------------CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhH
Q 020863          188 -------S---------A----------------SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICG  235 (320)
Q Consensus       188 -------~---------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~  235 (320)
                             +         .                .......+..++...++.........+....++.|.+|++.|+...
T Consensus       131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~  210 (633)
T TIGR00805       131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI  210 (633)
T ss_pred             ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence                   0         0                0000011222333333444444444566678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---------------------c-chhHHHHHHHHHHHHHHHHHhhcccCC
Q 020863          236 GMSATVNWISNLIVAQTFLTVAELV---------------------G-TGATFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       236 gi~~~~~~~~~~~~~~~~~~~~~~~---------------------g-~~~~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      |+......+|..+++.+-..+....                     | |...|++.+++.++..+. ++++|++.
T Consensus       211 ~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~l  284 (633)
T TIGR00805       211 GILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKAL  284 (633)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCcccc
Confidence            9988888888777766555444321                     1 444566666666555443 45566543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=98.72  E-value=1.1e-06  Score=79.97  Aligned_cols=130  Identities=16%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             ceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          113 NTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      .....+.|.+.+..+.+..+.. ...........++.++.|.++||+|||+.+..+.....++.+...... ..+     
T Consensus        43 ~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-~a~-----  115 (438)
T PRK10133         43 NLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIM-----  115 (438)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcC-----
Confidence            3344567888888888765544 444555666789999999999999999998877766665554332111 111     


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT  252 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~  252 (320)
                      . + ...+.+..+.....+ ...+....+..|..|.+.|....++.+....++..+++.+
T Consensus       116 ~-~-~~ll~~r~l~G~g~g-~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~  172 (438)
T PRK10133        116 N-Y-TLFLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_pred             C-H-HHHHHHHHHHHHHHH-HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1 111111111111111 1222333455677777767666777777766777666554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.71  E-value=7.8e-07  Score=82.71  Aligned_cols=137  Identities=21%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q 020863          137 LSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP  216 (320)
Q Consensus       137 ~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (320)
                      ..........++.+++|.++|++|||+.+..+.+...++.++...+..            ...+...-++..+...+...
T Consensus        94 ~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------------~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   94 LTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------------WYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHhccchhhhhh
Confidence            344455557899999999999999999988777766666665544320            11222223333332223334


Q ss_pred             cchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          217 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL--VGTGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       217 ~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      +...|.+|+.|++.|+...++....-.++..++ .........  .+|...+.+....+++..+. .+++||+
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            556899999999999988777665555444443 322222222  25655555555555544444 6788886

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.70  E-value=1.7e-07  Score=80.54  Aligned_cols=141  Identities=23%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 020863          134 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG  213 (320)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (320)
                      +........+.++++++..|.++||+|||+.++.+..+.+++.......  .        .+  ..+...-+. .....|
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~--------~F--~afv~aR~l-~Gi~kg  136 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--R--------NF--AAFVLARFL-GGIFKG  136 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--H--------HH--HHHHHHHHh-hhhccC
Confidence            3444445566789999999999999999999887666555543332221  1        11  111111111 222334


Q ss_pred             ccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---Hhcchh-HH-HHHHHHHHHH-HHHHHhhcccC
Q 020863          214 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE---LVGTGA-TF-LILAGIAVLA-VVFVILFVPET  287 (320)
Q Consensus       214 ~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~---~~g~~~-~~-~~~~~~~~~~-~~~~~~~~pet  287 (320)
                      .-.+.-++++|+++.+.|+.+.+.....-.+|.++||.+-.++..   ..|... ++ .+++.+..++ .....+++|||
T Consensus       137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            445667899999999999998887776666777777766555444   333211 11 1222222333 44556789998

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.1e-07  Score=83.78  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             cceeeeehHHHH----HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-------HHH-HHHhHHHHHHHHHH
Q 020863          112 INTVMYYSPTIV----QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK-------KLA-LSSLAGVIISLVLL  179 (320)
Q Consensus       112 ~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR-------~~~-~~~~~~~~~~~~~~  179 (320)
                      ...+.|+.|...    +..+.+.+ ...+...+..+++.+|.+++|.++||+-|+       +.. .........+...+
T Consensus       260 ~Gs~sww~p~~~~~~~~~~~~~~~-~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L  338 (493)
T KOG1330|consen  260 IGSLSWWAPAFIYYSYELIGFDHN-ATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL  338 (493)
T ss_pred             ccccchhhhhHHHHHHHHhCCccc-cchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence            345556666543    33444433 345555566677889999999999995432       221 11122222222222


Q ss_pred             HHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 020863          180 SWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ-TFLTVAE  258 (320)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~-~~~~~~~  258 (320)
                      ........    ......+.++.++....+  .++++.. -+..|..|++.|.++.++...+..+.+-.++. +...+.+
T Consensus       339 ~~~~~~~~----~s~~~~~il~~~g~~~~~--~~~a~n~-~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd  411 (493)
T KOG1330|consen  339 FLFPAFTS----SSMIFGLILFLVGETISW--FNWATNN-PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD  411 (493)
T ss_pred             HHHHhhhh----HHHHHHHHHHHHHHHHHh--ccccccc-ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence            22211111    111111122222222222  2233332 45568889999999988877665554444333 5555544


Q ss_pred             H
Q 020863          259 L  259 (320)
Q Consensus       259 ~  259 (320)
                      +
T Consensus       412 ~  412 (493)
T KOG1330|consen  412 K  412 (493)
T ss_pred             H
Confidence            4

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.3e-08  Score=89.37  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=100.9

Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 020863          122 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI  201 (320)
Q Consensus       122 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (320)
                      +-+-.+.++.....+ .....+...+.+++.|++.||++||.++..+...-.++.+.....  .         .-|. +.
T Consensus        59 v~~~fni~~s~~Gll-~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~---------~Fwq-~~  125 (493)
T KOG1330|consen   59 VQTYFNISDSELGLL-QTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--N---------HFWQ-VL  125 (493)
T ss_pred             HHHhcCCCchhccch-hHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--H---------HHHH-HH
Confidence            333456655554444 344445578899999999999999998876655443333332221  0         1122 22


Q ss_pred             HHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHH
Q 020863          202 GLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~  280 (320)
                      ..-.+.+..-....++...+++|+||...|+++.++-+....+|..++...-..+....+ |.++|...+++.++.++++
T Consensus       126 l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~  205 (493)
T KOG1330|consen  126 LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLV  205 (493)
T ss_pred             HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHH
Confidence            222233333334567777899999999999999999888877777665444334444444 7788888888888888878


Q ss_pred             HhhcccCCCC
Q 020863          281 ILFVPETQGL  290 (320)
Q Consensus       281 ~~~~pet~g~  290 (320)
                      .++.+|....
T Consensus       206 ~~f~~eP~rg  215 (493)
T KOG1330|consen  206 FLFVREPERG  215 (493)
T ss_pred             HhhccCcccc
Confidence            8888777543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.70  E-value=1.7e-06  Score=80.08  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=89.6

Q ss_pred             ehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          118 YSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       118 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .+|.+.++ .+.+....+. .....+++.++|+++.+++.+|++++++...+.+..+++.+.+.+.    .     .  .
T Consensus       240 LlPl~a~~~l~~~a~~yGl-l~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~----~-----~--~  307 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGL-LLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS----P-----S--F  307 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHH-HHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc----h-----H--H
Confidence            45766654 5555444433 3334455567788888888888888777655554444333332211    0     0  1


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      ++.....++...... ..........-+..|.+.||++.++.......+..++..+...+.+..|...++.+.++..+++
T Consensus       308 ~~~~~~l~l~G~~~~-~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~  386 (524)
T PF05977_consen  308 WLALIALFLAGAAWI-IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            222222222222111 1122233556688899999999999998888888889999998888888777776655555554


Q ss_pred             HHHH
Q 020863          277 VVFV  280 (320)
Q Consensus       277 ~~~~  280 (320)
                      .++.
T Consensus       387 ~~~~  390 (524)
T PF05977_consen  387 ALIA  390 (524)
T ss_pred             HHHH
Confidence            4433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.70  E-value=4.4e-07  Score=84.09  Aligned_cols=153  Identities=20%  Similarity=0.210  Sum_probs=83.6

Q ss_pred             hHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Q 020863          119 SPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWI  198 (320)
Q Consensus       119 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (320)
                      ++.+.++.|.+.+. .+..+ .......++.++.|.++|.+|||..++.+.+...++.++..-+    ++     .-  .
T Consensus        67 l~~I~~diG~~~~~-~w~~~-~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA----~~-----~~--~  133 (599)
T PF06609_consen   67 LPYINADIGGSDNW-SWFST-AWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA----QN-----MN--T  133 (599)
T ss_pred             HHHHHHhcCCCccc-hHHHH-HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC----Cc-----HH--H
Confidence            46677888876543 44444 4455577888899999999999999887766655555443211    11     00  1


Q ss_pred             HHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 020863          199 AVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  278 (320)
                      .+.+..+...  +.|.........+|+.|.+.|..+.++.....-.....++..-..+....+|.+.|++.+....++.+
T Consensus       134 ~iag~~l~Gv--gaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  134 FIAGMVLYGV--GAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHH--hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            1122222211  12233344556799999999977665544322222212222222222334688888776655554444


Q ss_pred             HH-Hhhccc
Q 020863          279 FV-ILFVPE  286 (320)
Q Consensus       279 ~~-~~~~pe  286 (320)
                      .. +++.|.
T Consensus       212 l~~~fY~PP  220 (599)
T PF06609_consen  212 LIFFFYFPP  220 (599)
T ss_pred             HHHHHhCCC
Confidence            32 334443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.67  E-value=5.4e-07  Score=79.83  Aligned_cols=189  Identities=15%  Similarity=0.120  Sum_probs=103.7

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQS---NQLALLLSLAVAGTNAVGTIVGIYLIDHFG  160 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~g  160 (320)
                      ..+++|+|+.|...+..+......+.     .....+.+......+.   +..............++...+..++.+|+|
T Consensus       213 ~~~l~k~~~fw~~~l~v~g~~~~Y~v-----fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig  287 (412)
T PF01306_consen  213 VLSLFKMRNFWFFVLFVIGVAAIYDV-----FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG  287 (412)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45678888888766654433222211     1111233333322211   122233344555567788888999999999


Q ss_pred             chHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHH-
Q 020863          161 RKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSA-  239 (320)
Q Consensus       161 rR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~-  239 (320)
                      .|+.++....++.+=.....+.  .       ..  +.....-.+-..-+.. ......-|+++.+|++..++...+.. 
T Consensus       288 ~k~~Lllag~i~~iRi~~~~~~--~-------~~--~~i~~~klLH~~e~~l-~lva~fkYI~~~fd~rlsAt~y~v~~~  355 (412)
T PF01306_consen  288 AKNLLLLAGVIMAIRIIGSGFA--T-------NP--WVISLIKLLHALEFPL-LLVAAFKYITAHFDKRLSATLYLVGFQ  355 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-----------SH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred             hHhHHHHHHHHHHHHHHHHhhh--c-------ch--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            9998765544333222221111  0       00  1111111111111100 01122468899999999988887753 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 020863          240 TVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQG  289 (320)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g  289 (320)
                      ....++..+.+.....+.+..|+...|.+++++.+...++..+.+++.+.
T Consensus       356 ~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  356 FAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            44556777777888888899998888988888888777777777765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.65  E-value=4.3e-08  Score=90.08  Aligned_cols=182  Identities=19%  Similarity=0.276  Sum_probs=112.3

Q ss_pred             hhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 020863           85 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL  164 (320)
Q Consensus        85 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~  164 (320)
                      .++++++.+....+.     ......++.....++|.+.++.+.+..+.+...+. .++..+++-++.|++.|+...|+.
T Consensus       292 ~~ll~~~~fl~~~~~-----~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Si-igi~~i~gRi~~G~laD~~~~~~~  365 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALS-----NLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSI-IGVSDIIGRIILGLLADKPGIRAL  365 (509)
T ss_pred             HHHHcCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH-HHHhhhhhhhhhhhhcCccccchH
Confidence            467777655433222     22223455556677888888999988776666554 456689999999999999884443


Q ss_pred             H--HHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHH
Q 020863          165 A--LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       165 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      .  ..+.+.++++.  +.......          +..++..+++..+...........+..|+.+.+.-..+.|+...+.
T Consensus       366 ~~~~~~ll~~gl~~--~~~p~~~~----------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  366 VLFLLTLLIAGLAR--LFLPFATT----------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             HHHHHHHHHHHHHH--HHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            3  33333333332  11111110          1122222222222222233444467789999998888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhcc
Q 020863          243 WISNLIVAQTFLTVAELVG-TGATFLILAGIAVLAVVFVILFVP  285 (320)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~p  285 (320)
                      .++.++++.+...+.+..| |...|++.+...+++.++ ++..|
T Consensus       434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~  476 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL-LLILR  476 (509)
T ss_pred             HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence            9999998888887777776 666777776666666653 34444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2.5e-06  Score=76.57  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccc
Q 020863          139 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP  218 (320)
Q Consensus       139 ~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (320)
                      .......+++.++...+.+|+|+|++...+.+..+++...+.+.   . .   +.   ...++...+.........++++
T Consensus       279 ~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~---~-~---~~---~~l~~~~~~i~~~g~~~~~~l~  348 (467)
T COG2211         279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT---P-A---GS---VVLIVVALIIAGVGTGIANPLP  348 (467)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh---c-C---cc---hHHHHHHHHHHHHHhhcccccc
Confidence            33344445568888999999999999887765555554443322   1 1   11   1111222122233334557788


Q ss_pred             hhcccccC-----Cccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------hhHHHHH-HHHHHH
Q 020863          219 WTLNSEVY-----PEQYRG--ICGGMSATVNWISNLIVAQTFLTVAELVGT---------------GATFLIL-AGIAVL  275 (320)
Q Consensus       219 ~~~~~Elf-----P~~~R~--~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~---------------~~~~~~~-~~~~~~  275 (320)
                      |++.+|..     -|..|.  ...|....+.-++..+++.+........|+               ...+.+. +...++
T Consensus       349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al~gI~~~~~~~Pa~l~l~  428 (467)
T COG2211         349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLL  428 (467)
T ss_pred             HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99998875     344453  345666667777777777766665554432               1122222 222233


Q ss_pred             HHHHHHhhcccCCCCCHHHHHHHHhccccc
Q 020863          276 AVVFVILFVPETQGLTFLEVEQMWKERAWG  305 (320)
Q Consensus       276 ~~~~~~~~~pet~g~~~~~~~~~~~~~~~~  305 (320)
                      ..+. ..+.|-+ .+++.+|.++.+++...
T Consensus       429 ~~i~-~~~y~L~-~~~~~~I~~eL~~r~~~  456 (467)
T COG2211         429 AAII-IFFYKLN-EKMHKEIIEELEQRKAA  456 (467)
T ss_pred             HHHH-HHhccCC-HHHHHHHHHHHHHHhcc
Confidence            3332 3345444 45567777777776643

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.64  E-value=1.7e-06  Score=77.55  Aligned_cols=174  Identities=17%  Similarity=0.137  Sum_probs=96.4

Q ss_pred             HHHhhcCcceeeeehHHHHHHhCCCCcHHHHHH--HHHHHHHHHHHHHHH-HHHHhhhcchHHHHHHhHHHHHHHHHHHH
Q 020863          105 AFQQFTGINTVMYYSPTIVQMAGFQSNQLALLL--SLAVAGTNAVGTIVG-IYLIDHFGRKKLALSSLAGVIISLVLLSW  181 (320)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~l~~-g~l~Dr~grR~~~~~~~~~~~~~~~~~~~  181 (320)
                      .+.|...+.....+.|.++++.|.+..+.+...  .++ ....++..++. ++..||.|||+..+....... +......
T Consensus        10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~-~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~-~~~~~~~   87 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLP-WVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV-SACLASL   87 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHhccccccCCcchhHHHHHHHHH-HHHHHHH
Confidence            344444444555677889999998876665542  333 33355555554 678999998887543321111 1111111


Q ss_pred             HHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          182 AFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      .....  .  .....+. +. ......++.....+....+..|..+.+.++...+.......+|..+++.....+.+..|
T Consensus        88 ~~~~~--~--~~~~~~~-~~-~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g  161 (390)
T TIGR02718        88 ALVGP--D--VAGAGWA-VG-LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG  161 (390)
T ss_pred             HcCCc--c--hhhHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            11110  0  0101111 11 11112222222233444566788888877777776666667777777776667777889


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhccc
Q 020863          262 TGATFLILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~pe  286 (320)
                      +...|++.+++.++..+..++..|+
T Consensus       162 w~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       162 QRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9888888887776665555444444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11462 putative transporter; Provisional

Probab=98.60  E-value=3.8e-06  Score=77.02  Aligned_cols=28  Identities=14%  Similarity=0.065  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      ...+..+++.+++++++||+|+|+....
T Consensus       271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~  298 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDWKCKVTIFWW  298 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            3444567888999999999999987653

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.56  E-value=5.1e-06  Score=75.71  Aligned_cols=149  Identities=16%  Similarity=0.059  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc-hHHHHHHhHHHHHHHHHHHHHHHhcC---C------CCCCcch-hHHHHHHHHHHHH
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGR-KKLALSSLAGVIISLVLLSWAFISGS---S------ASSSGVY-GWIAVIGLALYIA  208 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~gr-R~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~-~~~~~~~~~~~~~  208 (320)
                      ...+...+.+++--++.+|+|+ |+....+.+..+++.....+.-...+   .      ....... .+..+..+.....
T Consensus       313 ~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi  392 (477)
T TIGR01301       313 LNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI  392 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH
Confidence            3333344555666788899984 66767665555555555432211000   0      0000000 0112222222222


Q ss_pred             HHhccccccchhcccccCCccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhhc
Q 020863          209 FFAPGMGPVPWTLNSEVYPEQYR--GICGGMSATVNWISNLIVAQTFLTVAELVG--TGATFLILAGIAVLAVVFVILFV  284 (320)
Q Consensus       209 ~~~~~~~~~~~~~~~ElfP~~~R--~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
                      . -.....++|++.++..|++.|  |...|+-|..-.+..++.......+.+..|  ....+.+-++.++++++.+++.+
T Consensus       393 ~-~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~  471 (477)
T TIGR01301       393 P-LAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL  471 (477)
T ss_pred             H-HHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence            2 223456788999999986555  667788777776666666655555555555  23455666677778888888899


Q ss_pred             ccCCC
Q 020863          285 PETQG  289 (320)
Q Consensus       285 pet~g  289 (320)
                      |+++.
T Consensus       472 ~~~~~  476 (477)
T TIGR01301       472 PRPRV  476 (477)
T ss_pred             CCCCC
Confidence            98864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.53  E-value=3.6e-06  Score=75.29  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=84.9

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ...-+.|.++++.|.+..+.+...+.. .....++.++.+.++||+|||............ ...+... ...+     .
T Consensus        22 ~~~p~l~~~l~~~g~s~~~ig~~~s~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~-l~~~~~~-~~~~-----~   93 (382)
T TIGR00902        22 IFLPFFPAWLKGIGLGEEMIGLLIGAA-LIARFAGGLFFAPLIKDANHIIIALRLLALASA-IFAAAFS-AGAH-----N   93 (382)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHH-Hhhh-----h
Confidence            334567788899998776665544433 444678888999999999986543211111111 1111111 0110     1


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGI  272 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  272 (320)
                      .  +..++...+...+ .....+....+..|.  .+.|++..|.....+.++..+++.....+.+..||...|.+....
T Consensus        94 ~--~~l~~~~~l~~~~-~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        94 A--WLLFIAIGLFALF-FSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             H--HHHHHHHHHHHHH-HccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            1  1222222222222 222344555555442  466888899988888899988888888888888888777665544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=3.4e-07  Score=79.13  Aligned_cols=140  Identities=20%  Similarity=0.176  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      .-...+.+.+++.|.++||+|+|..++.++..+..+.+++.+.-    +      +.  .+...-..++...........
T Consensus       114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~----s------y~--~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN----S------YP--MLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc----h------hH--HHHHHHHHhhhhHHHHHhhhH
Confidence            44455788889999999999999998888777766666544321    1      01  122222222222222233345


Q ss_pred             hcccccCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 020863          220 TLNSEVYPEQY-RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLT  291 (320)
Q Consensus       220 ~~~~ElfP~~~-R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~  291 (320)
                      ++.++.||.+. |+++.|+.-....+|.++++.+-..+.+..|...+|+++++++++...+.++.++.++..+
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            78889999877 7999999988888888888887777888899999999999999988888777776665443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.51  E-value=1.4e-06  Score=79.28  Aligned_cols=164  Identities=20%  Similarity=0.181  Sum_probs=88.5

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchH-HHHHHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----FGRKK-LALSSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr----~grR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ..+++.+..|.+....+.. .....+..++..++.|+++||    +|||+ .++.+.....++...+..   . +.....
T Consensus        22 l~~~~~~~~g~s~~~~g~i-~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~---~-~~~~~~   96 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTL-FLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT---T-PDFSAT   96 (437)
T ss_pred             HHHHHHHccCCCHHHHHHH-HHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh---C-CCCCcc
Confidence            3445556678876554443 334445578889999999998    67755 444444433333332221   1 111111


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-------Hhcchh
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAE-------LVGTGA  264 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~-------~~g~~~  264 (320)
                      ....+ ......++...... ......++.+|+. +++.|++..+.....+.+++.+++.+..++..       ..+|..
T Consensus        97 ~~~~~-~~~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~  174 (437)
T TIGR00792        97 GKLVY-AYITYILLGLFYSF-VNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFM  174 (437)
T ss_pred             hHHHH-HHHHHHHHHHHHHh-hcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHH
Confidence            11111 11111222222221 1122246677887 46789999888887777777766655444433       234555


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCC
Q 020863          265 TFLILAGIAVLAVVFVILFVPETQ  288 (320)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~pet~  288 (320)
                      .+.+.+++.++..+..++..||++
T Consensus       175 ~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       175 FALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEecC
Confidence            666666666666665666677754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.49  E-value=5.2e-06  Score=74.21  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhH-HHHHHHHHHHHHHHhcCCCCCC
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLA-GVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ....+.|.++++.|.+..+.+...+. ......++.++.|.++||+|||........ ...+..  +.  .....    +
T Consensus        22 ~~~p~l~~~l~~~g~s~~~iG~~~~~-~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~--~~~~~----~   92 (382)
T PRK11128         22 VFLPFWSVWLKGQGYTPETIGLLLGA-GLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VA--FWFGA----H   92 (382)
T ss_pred             HHhhhHHHHHHhcCCCHHHHHHHHHH-HHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HH--HHHhc----c
Confidence            33456677888888876665555444 445567889999999999999532211111 111111  11  11110    1


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGI  272 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  272 (320)
                      ..  +..++...+. ........+...++..+.  .+.|+.+.|.....+.++..+++.+-..+.+..|+...|++.++.
T Consensus        93 ~~--~~l~i~~~l~-g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~  167 (382)
T PRK11128         93 SF--WLLFVAIGLF-NLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG  167 (382)
T ss_pred             cH--HHHHHHHHHH-HHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            11  1122222212 222222334444555554  344677777777778888888888888888888888887766554


Q ss_pred             HHHHHHHHHhhcccCC
Q 020863          273 AVLAVVFVILFVPETQ  288 (320)
Q Consensus       273 ~~~~~~~~~~~~pet~  288 (320)
                      .++..+ ..++.||.+
T Consensus       168 ~~~~~~-~~~~~~~~~  182 (382)
T PRK11128        168 VASMLL-GQLLRPTIM  182 (382)
T ss_pred             HHHHHH-HHHccCCCC
Confidence            443333 334556543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.48  E-value=5.6e-06  Score=76.29  Aligned_cols=161  Identities=16%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      ...+.+.+.+..+.+..+.++..++.... ..+..++.+.+.||+|.|.+.+.+...+.++.+...+..         ..
T Consensus        65 ~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~-~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~---------~i  134 (509)
T KOG2504|consen   65 FGLLFEELMDYFGSSSSQIAWIGSLLLGV-YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT---------SL  134 (509)
T ss_pred             ehhhHHHHHHHhCCCccHHHHHHHHHHHH-HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh---------hH
Confidence            33456778888888777666666655444 677788889999999999988877766666555443321         11


Q ss_pred             hhHHHHHHHHHH-HHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 020863          195 YGWIAVIGLALY-IAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIA  273 (320)
Q Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  273 (320)
                        +-..+...+. ...+++...+. ..+.+..| .+.|+.+.|++....-++.++-+.+.-.+.+..||...+.+++.+.
T Consensus       135 --~~l~lt~gvi~G~G~~~~~~pa-iviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~  210 (509)
T KOG2504|consen  135 --WQLYLTFGVIGGLGLGLIYLPA-VVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS  210 (509)
T ss_pred             --HHHHHHHHHHhhccchhhhcch-hhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence              1122222221 11111122222 23444444 5669999998887766776666666667778889999999988888


Q ss_pred             HHHHHHHHhhcccCCC
Q 020863          274 VLAVVFVILFVPETQG  289 (320)
Q Consensus       274 ~~~~~~~~~~~pet~g  289 (320)
                      +-..+....+.|.+..
T Consensus       211 l~~~~~~~~~rp~~~~  226 (509)
T KOG2504|consen  211 LNVLVAGALLRPLSPP  226 (509)
T ss_pred             HHHHHHHHHcCCCCcC
Confidence            7777777777774433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.46  E-value=1.3e-05  Score=69.84  Aligned_cols=171  Identities=22%  Similarity=0.267  Sum_probs=93.2

Q ss_pred             chhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020863           83 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR  161 (320)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~gr  161 (320)
                      ...+++++|+.+...+... +....+.    ....|+++++.+ .|.+..+.+...+.. .++..+|-+++.++..|+..
T Consensus       228 ~~~~l~~~~~~~~gvl~~F-lYVG~Ev----a~gsfl~~y~~~~~g~~~~~aa~~~s~~-~~~~~vGRFig~~lm~~~~~  301 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIF-LYVGAEV----AIGSFLVSYLEELLGLNEQQAAYYLSFF-WVGFMVGRFIGSALMSRIKP  301 (422)
T ss_pred             hHHHHHhChHHHHHHHHHH-HHHhHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCH
Confidence            4567888888877655422 2221111    223456666666 565555555554444 44478999999999999998


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHH
Q 020863          162 KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV  241 (320)
Q Consensus       162 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~  241 (320)
                      .+.+........+.++..  .+..       ...+...+.    ....+...+.|..+....+..|.+.. .+++ ....
T Consensus       302 ~k~Laf~a~~~ill~~~~--~l~~-------g~v~~~~l~----~ig~F~simfPTIfslal~~l~~~ts-~~s~-~l~m  366 (422)
T COG0738         302 EKYLAFYALIAILLLLAV--ALIG-------GVVALYALF----LIGLFNSIMFPTIFSLALKNLGEHTS-VGSG-LLVM  366 (422)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHhc-------ChHHHHHHH----HHHHHhHHHHHHHHHHHHhccCcccc-ccce-eeee
Confidence            887765443322222211  1111       111111122    22334445677778888888884333 2322 2333


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 020863          242 NWISNLIVAQTFLTVAELVGTGATFLILAGIAV  274 (320)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  274 (320)
                      +-+|+.+.|.+...+.+..|....+...-.++.
T Consensus       367 aivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~  399 (422)
T COG0738         367 AIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCY  399 (422)
T ss_pred             heecchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            446666778888878887775544443333333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.43  E-value=1.6e-09  Score=99.02  Aligned_cols=139  Identities=20%  Similarity=0.196  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccc
Q 020863          139 LAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVP  218 (320)
Q Consensus       139 ~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (320)
                      ....++..+|++++|+++||+|||+.+..+.....++.+........    .  .   ...+....++.++...+..+..
T Consensus        53 ~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~----~--~---~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   53 SSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY----N--N---FWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             HHHHhhhcccccccccccccccccccccccccccccccccccccccc----c--c---cccccccccccccccccccccc
Confidence            34445567899999999999999998877666555554443322100    0  0   1112222222233333345566


Q ss_pred             hhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          219 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG---TGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       219 ~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      ..+..|..|++.|+...++......+|..++...........+   |...+.+.+...++. ++..+++||+
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES  194 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            7899999999999888777665554554444333222222222   444444434443333 3345778998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.40  E-value=2e-05  Score=65.45  Aligned_cols=137  Identities=22%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             cceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCC
Q 020863          112 INTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS  191 (320)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      .+....|.|.+.+..+.+..+.... .....+...+ .+.+|.+.|++|.|..+..+.....++...+...+... ... 
T Consensus        18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l-~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~-i~~-   93 (250)
T PF06813_consen   18 TYTFSAYSPQLKSRLGYSQSQLNTL-STAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR-IPS-   93 (250)
T ss_pred             ccchhhhhHHHHHHhCCCHHHHHHH-HHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc-cCc-
Confidence            3455678999999999876554433 3333333344 47889999999999988887777666665554443222 111 


Q ss_pred             CcchhHHHHHHHHHHHHHHhccc-cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          192 SGVYGWIAVIGLALYIAFFAPGM-GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA  257 (320)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~  257 (320)
                      ..  .|  ..++..+....+..+ .........+-||. .||++.|+.-...-+++.+-+.++....
T Consensus        94 ~~--~~--~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   94 LP--VW--LMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             cc--hH--HHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            11  11  112222111111111 12222344578985 6999999988877777766666555443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.34  E-value=9.5e-06  Score=74.20  Aligned_cols=162  Identities=19%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Q 020863          125 MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA  204 (320)
Q Consensus       125 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (320)
                      +.++..++..... ....+..+++.+.++++.||+.-.+.+....+...+..+....  ..          ..-.+++.-
T Consensus        75 dl~~~~~~l~~~~-t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--~~----------s~~~~ialr  141 (495)
T KOG2533|consen   75 DLKLVGNQLGVLD-TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--VH----------SFPGLIALR  141 (495)
T ss_pred             ccchhhhhhhhHH-HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--Hh----------hhHHHHHHH
Confidence            3344444444444 4455568999999999999999444433222211111111111  11          011233334


Q ss_pred             HHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH------HhcchhHHHHHHHHHHHHHH
Q 020863          205 LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~  278 (320)
                      ++.+.+-.+..|....+.+--|..+.|++-.|+-.+.+.+++++++.+-..+.+      ..||.+.|++-++++++.++
T Consensus       142 ~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi  221 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI  221 (495)
T ss_pred             HHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence            444445555566666888999999999999999998888999888887766532      35788999999999999998


Q ss_pred             HHHhhcccCCC--CCHHHHHHHH
Q 020863          279 FVILFVPETQG--LTFLEVEQMW  299 (320)
Q Consensus       279 ~~~~~~pet~g--~~~~~~~~~~  299 (320)
                      ++++++|+..-  +-++|.|+.+
T Consensus       222 ~~f~~lp~~P~~~~fl~~~ek~~  244 (495)
T KOG2533|consen  222 VVFFFLPDNPSKAWFLTDEEKEL  244 (495)
T ss_pred             eEEEEecCChhhccccchHHHHH
Confidence            88899987544  4455555433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.28  E-value=1.2e-05  Score=71.98  Aligned_cols=142  Identities=18%  Similarity=0.134  Sum_probs=85.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 020863          128 FQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALY  206 (320)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (320)
                      ++.++........... --...+++||++|| +|+|+.+..+.+..+++.+.+...-    .......  ++.+..+   
T Consensus        58 ~~~~~A~~l~~~y~sl-VY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----~~~~~gl--~i~L~~I---  127 (498)
T COG3104          58 FDETHATGLFSAYGSL-VYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----VSGPGGL--YIGLALI---  127 (498)
T ss_pred             cChHhhHHHHHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccccHH--HHHHHHH---
Confidence            6554433333322222 24667899999999 8999998887777666665543321    0000111  1111111   


Q ss_pred             HHHHhccccccchhcccccCCccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 020863          207 IAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFV  280 (320)
Q Consensus       207 ~~~~~~~~~~~~~~~~~ElfP~~~--R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  280 (320)
                       .......=+....+..|++|++.  |-.+.++-....++|+++++.+.+.+....|++..|...+.-+.++.+..
T Consensus       128 -~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f  202 (498)
T COG3104         128 -IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF  202 (498)
T ss_pred             -HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence             11111222344567889997644  33345555556678899999999999999999888888777777766643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.27  E-value=2.1e-06  Score=78.01  Aligned_cols=164  Identities=17%  Similarity=0.155  Sum_probs=89.3

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchHHHH-HHhHHHHHHHHHHHHHHHhcCCCCCC
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID----HFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASSS  192 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~D----r~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (320)
                      ..+++.+..|++....+. .....-+..++..++.|+++|    |+|||+..+ .+.....++...+...  ........
T Consensus        24 ~~~f~~~~~gl~~~~~g~-i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~--~p~~~~~~  100 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGL-ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP--PPAGLSFT  100 (428)
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc--ccchhhhh
Confidence            345556667887644433 333334446677778999999    899887543 3434333333332211  01011111


Q ss_pred             cchhHHHHHHHHHHHHHHhccccccchhcccccCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------chh
Q 020863          193 GVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSATVNWISNLIVAQTFLTVAELVG-------TGA  264 (320)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~-~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-------~~~  264 (320)
                      ....+. .+...++..++... .....++.+|+.++ +.|.+..+.....+.+++.+...+.+.+....|       +..
T Consensus       101 ~~~~~~-~~~~~l~~~~~t~~-~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~  178 (428)
T PF13347_consen  101 AKLVWL-FVFYILFDIAYTFV-QIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW  178 (428)
T ss_pred             hHHHHH-HHHHHHHHHhhhhc-cCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH
Confidence            111121 22222232332222 22235788999985 679999998888888888766666665554433       333


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 020863          265 TFLILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~pe  286 (320)
                      ...+++++..++.++.++..+|
T Consensus       179 ~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  179 MALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHhhhhhheeee
Confidence            4455556666666666667777

>PRK09669 putative symporter YagG; Provisional

Probab=98.24  E-value=3e-05  Score=70.84  Aligned_cols=160  Identities=14%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchH-HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----FGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr----~grR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .++.+..|.+....+. .....-+..++..++.|+++||    +|||+ .++.+.....++...+   +.. +.......
T Consensus        34 ~~~t~~~gls~~~~g~-i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~---f~~-p~~~~~~~  108 (444)
T PRK09669         34 YFYTDVFGLSAAIMGT-MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT---FYT-PDFGATGK  108 (444)
T ss_pred             HHHHHhcCCCHHHHHH-HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH---HhC-CCCCcchH
Confidence            3445567887655433 3334444577888999999998    77755 4444433333333222   111 11111111


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchhHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-------GTGATF  266 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~  266 (320)
                      ..+. .+...++...+.. ......++.+|+. +++.|.+..+.....+.+++.+++....++....       ++...+
T Consensus       109 ~~~~-~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~  186 (444)
T PRK09669        109 IIYA-CVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM  186 (444)
T ss_pred             HHHH-HHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence            1111 1111222222221 2222346778987 4577988888888888887777666554444333       233344


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 020863          267 LILAGIAVLAVVFVILFVPE  286 (320)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~pe  286 (320)
                      .+++++.++..+.+++..+|
T Consensus       187 ~i~~ii~~v~~~~~~~~~~e  206 (444)
T PRK09669        187 MVMGLLGVVLFFCCFFMTKE  206 (444)
T ss_pred             HHHHHHHHHHHHHHhCCeEE
Confidence            44555555544444444444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.20  E-value=4.1e-05  Score=63.68  Aligned_cols=125  Identities=17%  Similarity=0.125  Sum_probs=77.8

Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHH-HHHHHHHHHHHhcCCCCCCcchhHHHH
Q 020863          122 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAV  200 (320)
Q Consensus       122 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (320)
                      +.+..|+++.......+.+..+ .++.+++.|.++||.||+...+.+..... ++-..+.+++  .        ..++..
T Consensus       291 F~~rfGlS~~~a~~i~s~vy~I-sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--l--------sPy~~m  359 (459)
T KOG4686|consen  291 FQKRFGLSAVSAGNILSTVYGI-SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--L--------SPYTSM  359 (459)
T ss_pred             HHHhhCCChhhccchhhhhhhh-hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--c--------cHHHHH
Confidence            4556898877666666666555 67888899999999999987665433222 2222222211  1        113333


Q ss_pred             HHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          201 IGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      ....+.....+.    ..|...+-+.|.+.-|++.|.+.++.+++-.+.+.+...+.+.-|
T Consensus       360 ~~lGLsysllAc----slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  360 TFLGLSYSLLAC----SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHhhhHHHHHH----HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            222222222222    235556778899999999999999999998777776666555444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.18  E-value=8.6e-05  Score=67.51  Aligned_cols=137  Identities=21%  Similarity=0.248  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcc
Q 020863          143 GTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLN  222 (320)
Q Consensus       143 ~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (320)
                      ...++.+..-|.++||+|||..+......+.+..+.+.+.-            .|..+ ...+...+.  .......++.
T Consensus        73 ~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~------------~~~~~-~~~l~g~~~--~~~s~~~a~v  137 (463)
T KOG2816|consen   73 LLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG------------YWFFL-LLGLSGGFS--AIFSVGFAYV  137 (463)
T ss_pred             HHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH------------HHHhh-hcccccchh--hhhhhhhhhe
Confidence            33567788889999999999987766555544443332221            01111 111111111  1123345788


Q ss_pred             cccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 020863          223 SEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE  294 (320)
Q Consensus       223 ~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~  294 (320)
                      ++....+.|....|+.+..-..+..+++..-....+..|...+|.+-++..++..++..+++||+..++.++
T Consensus       138 adis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  138 ADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             eeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            899999999999999888766777777777777777778777888888888888888889999997776554

>PRK11462 putative transporter; Provisional

Probab=98.14  E-value=0.00016  Score=66.43  Aligned_cols=160  Identities=14%  Similarity=0.139  Sum_probs=82.1

Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchHHH-HHHhHHHHHHHHHHHHHHHhcCCCCCCcch
Q 020863          121 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----FGRKKLA-LSSLAGVIISLVLLSWAFISGSSASSSGVY  195 (320)
Q Consensus       121 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr----~grR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (320)
                      ++....|++....+. ..++.-+..++.-++.|+++||    +|||+.. +.+....+++...+   +. .+........
T Consensus        35 fyt~~~Gl~~~~~g~-i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll---f~-~p~~s~~~~~  109 (460)
T PRK11462         35 FYTDIFGIPAGFVGT-MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA---YS-TPDLSMNGKM  109 (460)
T ss_pred             HHHHhhCCCHHHHHH-HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH---Hh-CCCCCcchHH
Confidence            344556776544333 3334444467888999999996    6887644 44433333333222   11 1111111111


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYP-EQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-------TGATFL  267 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~  267 (320)
                      .+. .+...++...+... ..-.+++.+|+.+ ++.|++..+.-...+.+++.+++.+..++....|       +.....
T Consensus       110 ~y~-~~~~~~~~~~~t~~-~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~  187 (460)
T PRK11462        110 IYA-AITYTLLTLLYTVV-NIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA  187 (460)
T ss_pred             HHH-HHHHHHHHHHHHHH-hccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence            121 12222222222221 1222467889876 6789999998888888887777666555544433       222333


Q ss_pred             HHHHHHHHHHHHHHhhcccC
Q 020863          268 ILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       268 ~~~~~~~~~~~~~~~~~pet  287 (320)
                      +++.+.+++..+++...+|.
T Consensus       188 i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        188 VLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHHHhcceec
Confidence            44444444444444444553

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.09  E-value=2.2e-05  Score=69.45  Aligned_cols=99  Identities=24%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 020863          134 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG  213 (320)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (320)
                      .........+..+.|.++.||+.||+|||++....++..+++.+........   ......  ...+.++-.+......|
T Consensus        86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~---~~~~~~--m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT---TSPLGV--MMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC---CCCcch--hhHHHHHHHHhhccccC
Confidence            3344444455578899999999999999998765555555555422211111   111111  22333444444555556


Q ss_pred             ccccchhcccccCCccchhhhHHH
Q 020863          214 MGPVPWTLNSEVYPEQYRGICGGM  237 (320)
Q Consensus       214 ~~~~~~~~~~ElfP~~~R~~~~gi  237 (320)
                      -+|+..++.+|..-.+.||.-.+.
T Consensus       161 DYPlSAtI~SE~an~~~RGa~iaa  184 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGAFIAA  184 (538)
T ss_pred             CCcchHHHhhhhhhhccccceeEE
Confidence            688988999999999999875444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.09  E-value=0.00015  Score=66.92  Aligned_cols=159  Identities=16%  Similarity=0.211  Sum_probs=76.6

Q ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchH-HHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          122 IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID----HFGRKK-LALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       122 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~D----r~grR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      +.+..|.+....+.. ....-+..++..++.|+++|    |+|||+ .++.+...+.++...+   +.. +.........
T Consensus        33 yt~v~Gls~~~vg~i-~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll---f~~-p~~~~~~~~~  107 (473)
T PRK10429         33 YTDVVGLSVGLVGTL-FLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL---FSA-HLFEGTAQYV  107 (473)
T ss_pred             HHHhcCCCHHHHHHH-HHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH---HcC-CCCCccHHHH
Confidence            344558775544433 33444557788889999999    559855 4544444433333222   111 1111111111


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccC-CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVY-PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-------TGATFLI  268 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~  268 (320)
                      +. .+...++..++.. ......++.+|+. +++.|.+..+.....+.+++.+.+....++....|       +.....+
T Consensus       108 ~~-~~~~~l~~~~~t~-~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i  185 (473)
T PRK10429        108 FV-CVTYILWGMTYTI-MDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLV  185 (473)
T ss_pred             HH-HHHHHHHHHHHHH-HcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            11 1111222222221 1222346778988 57889988887666666665555444333322222       2222333


Q ss_pred             HHHHHHHHHHHHHhhcccC
Q 020863          269 LAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       269 ~~~~~~~~~~~~~~~~pet  287 (320)
                      ++++.++..+.+++..||.
T Consensus       186 ~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        186 LIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHcCceec
Confidence            4444444444444445654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.02  E-value=2e-05  Score=74.93  Aligned_cols=87  Identities=16%  Similarity=0.222  Sum_probs=50.6

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRK  162 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR  162 (320)
                      .++++++|.++...+.....     ...++....|.|.+++ ..|.+......+.........+++.+++|+++||+++|
T Consensus       323 ~~~Ll~n~~f~~~~l~~~~~-----~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       323 IKRLLCNPIYMLVILAQVID-----SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHcCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            55688888776654443222     2223334456777776 46776555444443333334578999999999999844


Q ss_pred             --HHHHHHhHHHHHH
Q 020863          163 --KLALSSLAGVIIS  175 (320)
Q Consensus       163 --~~~~~~~~~~~~~  175 (320)
                        +..........++
T Consensus       398 ~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       398 VKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHHHHHHHHHH
Confidence              4444444333333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.99  E-value=0.00089  Score=61.93  Aligned_cols=106  Identities=10%  Similarity=0.001  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhhhcchHH-------HHHHhHHHHHHHHHHHHHHH-hcCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q 020863          145 NAVGTIVGIYLIDHFGRKKL-------ALSSLAGVIISLVLLSWAFI-SGSSASSSGVYGWIAVIGLALYIAFFAPGMGP  216 (320)
Q Consensus       145 ~~~~~l~~g~l~Dr~grR~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (320)
                      .++.+++.+++.||++||+.       +..+...+.++...+..... ...... .....+ .+....+. ...-.-..+
T Consensus       322 iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~-~~s~~~-~i~~~~l~-g~Ge~~~~~  398 (489)
T PRK10207        322 VVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQG-LTSPWF-IVLVYLFQ-SLGELFISA  398 (489)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ccCHHH-HHHHHHHH-HHHHHHHhH
Confidence            34666777899999999862       44444444444333221111 111100 111111 11111111 111112234


Q ss_pred             cchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHH
Q 020863          217 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTF  253 (320)
Q Consensus       217 ~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~  253 (320)
                      ....+..+..|++.++.+.|+.+....+++.++..+-
T Consensus       399 ~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        399 LGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777888999999999998877777777765543

>PTZ00207 hypothetical protein; Provisional

Probab=97.98  E-value=0.0012  Score=61.99  Aligned_cols=74  Identities=8%  Similarity=0.033  Sum_probs=43.2

Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHH-HHHHHHHHHH----h------c---chhHHHHHHHHHHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIV-AQTFLTVAEL----V------G---TGATFLILAGIAVLAVVFVI  281 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~-~~~~~~~~~~----~------g---~~~~~~~~~~~~~~~~~~~~  281 (320)
                      ++.....+|+|- +.=|+-..++...+-+++++- ..++..+.+.    .      |   +..+|+++++++..+.+...
T Consensus       471 ~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        471 ATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            444578899999 666655555444444444432 2223323221    1      1   35678888888888888766


Q ss_pred             hhcccCCCC
Q 020863          282 LFVPETQGL  290 (320)
Q Consensus       282 ~~~pet~g~  290 (320)
                      .+--+|+.-
T Consensus       550 ~l~~R~r~~  558 (591)
T PTZ00207        550 YVHLQYRRL  558 (591)
T ss_pred             heeeehHHH
Confidence            655566543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00082  Score=58.86  Aligned_cols=132  Identities=13%  Similarity=0.059  Sum_probs=77.6

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      .....|.+.+..+++..+.+.. -.....+.++.++..+++.+|+|+|+-++.+..++++...+..-+....       .
T Consensus        32 ~diLip~l~~~f~ls~~~a~li-qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~-------~  103 (422)
T COG0738          32 NDILIPHLKEVFDLTYFEASLI-QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK-------S  103 (422)
T ss_pred             chhhHHHHHHHhCccHHHHHHH-HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-------h
Confidence            3456788988888876654443 3444455788889999999999999988888777766665543211110       0


Q ss_pred             hhHHHHHHHHHHHHHHhcccc-ccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMG-PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA  257 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~  257 (320)
                      + ...+.+.  +....+.+.- ...-.+.+.+.|++.-+.-.+++..++.+|+.+++.+...+.
T Consensus       104 y-~~FL~~l--Fila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         104 Y-GFFLVAL--FILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             H-HHHHHHH--HHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1 1111111  1111111110 112246667777765555567777788888877776555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.95  E-value=0.0043  Score=57.25  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=51.0

Q ss_pred             cccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcc
Q 020863          213 GMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVP  285 (320)
Q Consensus       213 ~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p  285 (320)
                      ...+..+.+.+|..|++.|++..|+......+++.+++.+........++...|...+.++++++++.++..|
T Consensus       397 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       397 MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888999999999999999988887888877666554444445555666666555555555444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.94  E-value=0.0011  Score=61.63  Aligned_cols=136  Identities=13%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhhhcch----HHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhc
Q 020863          146 AVGTIVGIYLIDHFGRK----KLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL  221 (320)
Q Consensus       146 ~~~~l~~g~l~Dr~grR----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (320)
                      .+..++..++.+|+++|    ..+..+....+++...+..........  .....+ .++...+..........|....+
T Consensus       330 il~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~--~~vs~~-~~~~~~~l~~~ge~~~~p~g~s~  406 (500)
T PRK09584        330 MIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA--GIVSVN-WLIASYGLQSIGELMISGLGLAM  406 (500)
T ss_pred             HHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CccCHH-HHHHHHHHHHHHHHHHhHHHHHH
Confidence            34445555555665554    444555555555555443332211111  111111 12222222222333345666778


Q ss_pred             ccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHhcchhHHHHHHHHHHHHHHHHHhhc
Q 020863          222 NSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA----------ELVGTGATFLILAGIAVLAVVFVILFV  284 (320)
Q Consensus       222 ~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~  284 (320)
                      ..+..|++.|+...|+......+++.+++.+.....          ...++...|...+.++++.+++.+...
T Consensus       407 ~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~  479 (500)
T PRK09584        407 VAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTA  479 (500)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999876555566666655542110          111244566666655554444333333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.88  E-value=0.00099  Score=61.17  Aligned_cols=142  Identities=18%  Similarity=0.192  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhH-HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccc
Q 020863          138 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLA-GVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGP  216 (320)
Q Consensus       138 ~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (320)
                      ..+..+..++..++-|-++|+-|+|+.++.... .+.++...+.  +. .+.    ..  +...+...+....+ .....
T Consensus        76 ~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~--~v-~~~----~~--~~~~~l~iia~v~~-~~~~v  145 (477)
T PF11700_consen   76 NSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLW--FV-SPG----QW--WLALVLFIIANVGY-EASNV  145 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHH--Hh-Ccc----hH--HHHHHHHHHHHHHH-HHHHH
Confidence            334444466777888999999998886554322 2222222221  11 111    11  11111111111111 11223


Q ss_pred             cchhcccccCCccch--------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c
Q 020863          217 VPWTLNSEVYPEQYR--------------------------GICGGMSATVNWISNLIVAQTFLTVAELVG--------T  262 (320)
Q Consensus       217 ~~~~~~~ElfP~~~R--------------------------~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g--------~  262 (320)
                      ...++.+|+.+++.+                          ++.+|.....+.+|+++.-.+...+....+        .
T Consensus       146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~  225 (477)
T PF11700_consen  146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAI  225 (477)
T ss_pred             HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhh
Confidence            345788999988888                          889999999998888765444333322221        2


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCC
Q 020863          263 GATFLILAGIAVLAVVFVILFVPETQG  289 (320)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~pet~g  289 (320)
                      ...+.+.+..-++..+..++++||.++
T Consensus       226 r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  226 RVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            344555666666666667788888866

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=97.84  E-value=0.0013  Score=60.15  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=29.9

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchHHH
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF----GRKKLA  165 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~----grR~~~  165 (320)
                      +++.+..|++.... .....+..+..++..++.|+++||.    |||+..
T Consensus        33 ~y~~~~~gl~~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~   81 (448)
T PRK09848         33 SYYTDVAGVGAAAA-GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF   81 (448)
T ss_pred             HHHHHHcCCCHHHH-HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence            33334457765443 4444455566788999999999996    777644

>TIGR00788 fbt folate/biopterin transporter

Probab=97.81  E-value=0.00065  Score=62.48  Aligned_cols=155  Identities=17%  Similarity=0.047  Sum_probs=79.9

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----chHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG-----RKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~g-----rR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      +.+.++.|.+..+.+.+.++. .....+ .++.|.++||++     ||+.+..+.....  ...+ ......  .  +. 
T Consensus        50 ~~l~~~lg~s~~~i~~~~sl~-~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~--~~~~-~~l~~~--~--~~-  119 (468)
T TIGR00788        50 PMLTDDLGLDGARYQRLVGLS-SLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGS--AILY-GLLPGK--V--SS-  119 (468)
T ss_pred             HHHHHhcCCCHHHHHHHHHHH-HHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHH--HHHH-Hhcccc--c--ch-
Confidence            444556798876654443333 222333 455899999997     5555554433221  1111 111110  0  11 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGG---MSATVNWISNLIVAQTFLTVAELVGTGATFLILAG  271 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g---i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  271 (320)
                      . ....+. .+...+.........-.+..|..+ +.+..+.+   +......+|..+++.+...+.+..++...|++.++
T Consensus       120 ~-~~~~~~-~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~  196 (468)
T TIGR00788       120 A-KVAAAF-IFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAA  196 (468)
T ss_pred             H-HHHHHH-HHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            1 111111 111122222223445677789888 44443322   22232336777777777777777788888888777


Q ss_pred             HHHHHHHHHHhhcccCC
Q 020863          272 IAVLAVVFVILFVPETQ  288 (320)
Q Consensus       272 ~~~~~~~~~~~~~pet~  288 (320)
                      +.++. .+...+.||.+
T Consensus       197 l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       197 LLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHH-HHHHHhccccc
Confidence            77666 44456778864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.81  E-value=0.006  Score=52.93  Aligned_cols=157  Identities=20%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 020863          121 TIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAV  200 (320)
Q Consensus       121 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (320)
                      .++++.|++..+.+..... ..+...+...+.|.++||+|||+.-+...+...++.+.       .....-...+.--.+
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~-Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-------k~~~~~~~L~~GRvl  130 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVA-GFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-------KHSSNYPVLLLGRVL  130 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-------HhccccHHHHHHHHH
Confidence            4567778876665544333 33335566667789999999998644333333332221       111100000000011


Q ss_pred             HHHHHHHHHHhccccccchhcccc----cCCccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHH
Q 020863          201 IGLALYIAFFAPGMGPVPWTLNSE----VYPEQYRGICGGMSATV-NWISNLIVAQTFLTVAELVG--TGATFLILAGIA  273 (320)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~E----lfP~~~R~~~~gi~~~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~  273 (320)
                      .++.....+.+.     ---+..|    -+|.+-.+...+.+... +.+.+++++.+-..+.+..+  ..++|.....+.
T Consensus       131 gGiaTSLLfS~F-----EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l  205 (354)
T PF05631_consen  131 GGIATSLLFSAF-----ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL  205 (354)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            111111111110     0112223    34555444444444322 33344444444444555544  356777776776


Q ss_pred             HHHHHHHHhhcccCCCC
Q 020863          274 VLAVVFVILFVPETQGL  290 (320)
Q Consensus       274 ~~~~~~~~~~~pet~g~  290 (320)
                      .++.++....-+|..|.
T Consensus       206 ~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  206 AVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHhcccccCCC
Confidence            66666555555676665

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.68  E-value=0.0081  Score=57.35  Aligned_cols=152  Identities=20%  Similarity=0.224  Sum_probs=80.5

Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 020863          123 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVI  201 (320)
Q Consensus       123 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (320)
                      ....+.+......... ......-+..+++|+++|+ +||++.+..+.+...++..++.+.  .... ..........+.
T Consensus        15 ~~~lg~~~~~A~~i~~-~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~--a~~~-~~~~~~~~~~l~   90 (654)
T TIGR00926        15 LNFLGFSESTSTVLFH-TFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG--AIPS-SGHPLHDLLDLL   90 (654)
T ss_pred             HHHcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc--cCcc-cccchHHHHHHH
Confidence            3345555443332222 2233345667889999997 899988776655555544443321  1100 001111111222


Q ss_pred             HHHHHHHHHhccccccchhcccccCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchhHHHHHHH
Q 020863          202 GLALYIAFFAPGMGPVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELV-------GTGATFLILAG  271 (320)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~ElfP~~---~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~  271 (320)
                      ++.+ ......+.-+...+...|.|+.+   .|-+...+.....++|+++++.+.+.+....       +|..+|.+.++
T Consensus        91 gLaL-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        91 GLAL-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHH-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence            2221 11112222233345667777653   3566777788888899988888888776432       46667766666


Q ss_pred             HHHHHHHH
Q 020863          272 IAVLAVVF  279 (320)
Q Consensus       272 ~~~~~~~~  279 (320)
                      +++++.++
T Consensus       170 ~m~ia~lv  177 (654)
T TIGR00926       170 LMILALIV  177 (654)
T ss_pred             HHHHHHHH
Confidence            66655543

>TIGR00889 2A0110 nucleoside transporter

Probab=97.66  E-value=0.0013  Score=59.65  Aligned_cols=50  Identities=10%  Similarity=0.072  Sum_probs=33.8

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHHHHHhH
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLALSSLA  170 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~gr-R~~~~~~~~  170 (320)
                      +.+.++.|.+..+.+.... .......++.+..|.++||+|| |+.+..+..
T Consensus        27 ~~l~~~~g~s~~~iGl~~a-~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~   77 (418)
T TIGR00889        27 SYMSKTLHFSGAEIGWVYS-STGIAAILMPILVGIIADKWLSAQKVYAVCHF   77 (418)
T ss_pred             HHHHHhcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            3445567887666555444 4455578999999999999966 555554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.62  E-value=0.00099  Score=57.75  Aligned_cols=153  Identities=22%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIA  199 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (320)
                      |.+-..-|.+..+.+... ......+.+++...|.++|++|||+.+..+....++..      +....++.    +.+  
T Consensus       102 ~~l~~~w~~s~~q~~llt-~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~------~is~~spn----f~~--  168 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLT-LSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFG------VISGASPN----FAS--  168 (528)
T ss_pred             HHHHhhhchhhhhhhHHH-HHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHH------HhhcCCCC----eeh--
Confidence            333334455444444433 33344477888899999999999997765443332211      12222211    111  


Q ss_pred             HHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 020863          200 VIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF  279 (320)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  279 (320)
                       ++.+=....++.|..|..-++-.|..|...|....-+. ..-.++.++...+.-......||.+..+.......+.+ .
T Consensus       169 -L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~  245 (528)
T KOG0253|consen  169 -LCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-R  245 (528)
T ss_pred             -hhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-H
Confidence             11111222334444565556667999999998765544 33335555544444444555677665554443333333 3


Q ss_pred             HHhhcccCC
Q 020863          280 VILFVPETQ  288 (320)
Q Consensus       280 ~~~~~pet~  288 (320)
                      .++++||+.
T Consensus       246 f~~w~~ESp  254 (528)
T KOG0253|consen  246 FLVWVYESP  254 (528)
T ss_pred             HHhhcccCc
Confidence            457899973

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.52  E-value=0.00096  Score=59.23  Aligned_cols=151  Identities=20%  Similarity=0.234  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-HHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhc
Q 020863          134 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-SSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAP  212 (320)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (320)
                      +.+..+...+.+.++++++|.+.||.+.-+..+ .......++. +..... .....  +   .++....... ..++..
T Consensus       303 aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~-t~~~~--~---~viv~~t~~~-~g~~~~  374 (480)
T KOG2563|consen  303 AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTC-TLFLG--D---SVIVFTTCGL-LGFFGT  374 (480)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHh-hccCC--c---eEehhhhHHH-HHHhhc
Confidence            344455555668899999999999976544322 2222222221 111111 11111  1   1122222222 234455


Q ss_pred             cccccchhccccc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhhcccC
Q 020863          213 GMGPVPWTLNSEV-YPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG----TGATFLILAGIAVLAVVFVILFVPET  287 (320)
Q Consensus       213 ~~~~~~~~~~~El-fP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~pet  287 (320)
                      +..|+..-+..|. ||-..+ +..|+.+..+.+.+++-..+.....+..+    +...-+..+..++++.+++.++.|+-
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~-tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y  453 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEG-TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY  453 (480)
T ss_pred             CCCCcceeeeeeeccccCCc-ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence            6677777777786 565544 46677777777777666555555554444    33333445566666666666777776


Q ss_pred             CCCCHH
Q 020863          288 QGLTFL  293 (320)
Q Consensus       288 ~g~~~~  293 (320)
                      ++++.|
T Consensus       454 ~R~~~e  459 (480)
T KOG2563|consen  454 RRLRAE  459 (480)
T ss_pred             HhHhhh
Confidence            655555

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.52  E-value=0.0027  Score=57.43  Aligned_cols=137  Identities=18%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             eehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchHHHH-HHhHHHHHHHHHHHHHHHhcCCC-
Q 020863          117 YYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----FGRKKLAL-SSLAGVIISLVLLSWAFISGSSA-  189 (320)
Q Consensus       117 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr----~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  189 (320)
                      .|+.+++. ..|++....+ ..-++.=+..++.-++.|.++||    +|||+..+ .+....++...   ..+...... 
T Consensus        33 ~yLl~fYTdv~Gis~~~aG-~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~---l~F~~p~~~~  108 (467)
T COG2211          33 LYLLFFYTDVFGLSAALAG-TIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV---LLFITPDFSM  108 (467)
T ss_pred             HHHHHHHhcccCCcHHHHH-HHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH---HHHcCCCccc
Confidence            44555554 4566644332 22223333466778889999996    67666543 33222222222   122222111 


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~-~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      .....+.++..+...   ..+....-| ..++.+|+-++ +.|.+..+.-...+.+++.+...+++++....+
T Consensus       109 ~~k~~ya~vtY~l~~---l~YT~vniP-y~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g  177 (467)
T COG2211         109 TGKLIYALVTYMLLG---LGYTLVNIP-YGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG  177 (467)
T ss_pred             CcchHHHHHHHHHHH---HHHHheeCc-hhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            112333333333222   222222222 23677888644 669999999888899998888888888776554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.50  E-value=0.0022  Score=57.60  Aligned_cols=51  Identities=24%  Similarity=0.401  Sum_probs=36.6

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hHHHH
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR-KKLAL  166 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~gr-R~~~~  166 (320)
                      ...|.+.+++..|++..+.+...++. ....+++.++.|+++||.++ |+.+.
T Consensus        21 ~~p~~~~~L~~~G~s~~qIG~l~a~~-~~~~i~~~~~~g~~aDr~~~~~~~l~   72 (400)
T PF03825_consen   21 FLPYLPLYLESRGFSGTQIGILLAVG-PLARIVSPPFWGAIADRFGSAKRILA   72 (400)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhhhHHHHHH
Confidence            33456778999998877766655544 44478889999999999864 44443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.44  E-value=0.00063  Score=45.51  Aligned_cols=57  Identities=18%  Similarity=0.347  Sum_probs=42.9

Q ss_pred             cCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863          110 TGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus       110 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      .+.....-|.|.++++.|.+..+.+....+.. ...+++.++.|+++||.+|++....
T Consensus        14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~-~~~~~~~pl~g~laDk~~~~~~~l~   70 (77)
T PF12832_consen   14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRP-LIRFLAPPLWGFLADKFGKRKVILL   70 (77)
T ss_pred             HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCccHHHHH
Confidence            34444556778888999998777666555544 4478999999999999999987653

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.38  E-value=0.0058  Score=54.43  Aligned_cols=123  Identities=13%  Similarity=-0.007  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhc
Q 020863          133 LALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAP  212 (320)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (320)
                      ...+.+.+.....++..+.+.|+.||.|-|.....+.....++..+=.+.  ..+........ -+...+-.+.......
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is--s~p~v~~~f~~-~l~~~Gq~iaa~Aq~F  156 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS--SLPFVPPLFRR-PLTHTGQSIAAAAQPF  156 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc--cCccccccchh-hhhHHhHHHHHHhhhH
Confidence            34556666677788899999999999999998776666655554432221  11111111111 1222222221111100


Q ss_pred             cccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          213 GMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL  259 (320)
Q Consensus       213 ~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~  259 (320)
                       .-..+.-+..--||++.|+++..++...+-+|..++..+.+.+...
T Consensus       157 -im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  157 -ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             -hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence             1112223445569999999999888888888887777766665543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.014  Score=50.69  Aligned_cols=158  Identities=18%  Similarity=0.167  Sum_probs=91.0

Q ss_pred             cceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCC
Q 020863          112 INTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASS  191 (320)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (320)
                      +..+.-..+.+-++.|.+....+...+++. .+..+.++++.++.+|+|-++.+..+.+...++..+     -....   
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPl-l~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~i-----R~~~~---   98 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPL-LAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILI-----RSLGG---   98 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHH-----Hhccc---
Confidence            344445566777888888766666555554 446788889999999999988776554433332221     11100   


Q ss_pred             CcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHH
Q 020863          192 SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-GTGATFLILA  270 (320)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~  270 (320)
                          ....+.+. .+........+......+=+-||.+ -+...|+....-.+++.+++..-+++.++. +|.....+.+
T Consensus        99 ----~~~L~~gt-~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WA  172 (395)
T COG2807          99 ----LPLLFLGT-LLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWA  172 (395)
T ss_pred             ----HHHHHHHH-HHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHH
Confidence                01111111 1111111111222334556778877 445667776666677777777666666655 6888877777


Q ss_pred             HHHHHHHHHHHhhcccC
Q 020863          271 GIAVLAVVFVILFVPET  287 (320)
Q Consensus       271 ~~~~~~~~~~~~~~pet  287 (320)
                      ..+++..+   .|+|..
T Consensus       173 l~allAl~---~WlPq~  186 (395)
T COG2807         173 LLALLALL---IWLPQA  186 (395)
T ss_pred             HHHHHHHH---HHhhhc
Confidence            77666543   567774

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.25  E-value=0.0013  Score=58.65  Aligned_cols=45  Identities=22%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             HHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863          120 PTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus       120 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      |.-++ ..|++..+.+...+ .......+..++.|.++||+|.|+-+
T Consensus        31 ~iWL~~~~GLs~~~iG~i~s-~~~~~~l~~qp~~G~i~Dklg~kK~L   76 (412)
T PF01306_consen   31 PIWLTQVAGLSGTEIGIIFS-AGSLFALLAQPVYGFISDKLGLKKHL   76 (412)
T ss_dssp             HHHHHHHH---HHHHHHHHH-HHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred             HHHHccccCCCHHHHHHHHH-HHHHHHHHHHHhHHHhcchhhhhHHH
Confidence            44454 58988766554444 34445677888999999999966543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.19  E-value=0.0014  Score=62.18  Aligned_cols=142  Identities=15%  Similarity=0.228  Sum_probs=73.3

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCH--HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDK--EKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      .|+.=|++.+...++..+..+++|....   ...++  +++.+..+.-.+..+.+..   .   . +..+.- ....+++
T Consensus       320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp---~~~~~~~~~~~~~~k~~~~~~~~~~~---~---~-~~ikdf-p~s~~~l  388 (735)
T KOG3626|consen  320 AWWLGFLICGALLLFSAVPLFFFPKELP---KSQKRKRARDLHVLKTESGGAKSDKT---F---G-KKIKDF-PKSIKRL  388 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccCc---cccccchhhhhcccccccccccCCcc---h---h-hhHHHH-HHHHHHH
Confidence            6999999999999888777776665531   11111  1111111000000000000   0   0 000000 1235677


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG--RKKL  164 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~g--rR~~  164 (320)
                      ++||.+...++.     .......+.....|+|.+++ +.|.+......+...+...+.++|.+++|+++.|+.  -|..
T Consensus       389 l~N~if~~~~l~-----~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~  463 (735)
T KOG3626|consen  389 LSNPIFMLVVLA-----SVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA  463 (735)
T ss_pred             hcCchHHHHHHH-----HHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHH
Confidence            777765443332     22333344455567787666 678876555555545555556789999999999855  4444


Q ss_pred             HHH
Q 020863          165 ALS  167 (320)
Q Consensus       165 ~~~  167 (320)
                      ...
T Consensus       464 a~~  466 (735)
T KOG3626|consen  464 AKF  466 (735)
T ss_pred             HHH
Confidence            433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.17  E-value=0.0044  Score=56.39  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=35.0

Q ss_pred             hcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020863          220 TLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG  261 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g  261 (320)
                      .+.+|+.|+..-|+..++..++.+++..++..+-..+.+..+
T Consensus       341 vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  341 VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            567899999999999999999999999888776666665544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.17  E-value=0.016  Score=51.26  Aligned_cols=113  Identities=15%  Similarity=0.049  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhhhc-----chHH-HHHHhHHHHHHHHHHHHHHHhcCC---CCCCcchhHHHHHHHHHHHHHHhccc-c
Q 020863          146 AVGTIVGIYLIDHFG-----RKKL-ALSSLAGVIISLVLLSWAFISGSS---ASSSGVYGWIAVIGLALYIAFFAPGM-G  215 (320)
Q Consensus       146 ~~~~l~~g~l~Dr~g-----rR~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~  215 (320)
                      .+.-+..|+.||+-+     ||.. +..+...+..+.............   ......+.+....+..+.....+... +
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            466778899999988     7754 344444444433333332222211   11112222322322222222222222 2


Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE  258 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~  258 (320)
                      ....++.+|..|++.|+++.++....--++.+++..+...+.+
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            2335788999999999999999887776776666666665544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.07  E-value=0.021  Score=51.98  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc--chHHHHHHhHHHHHHHHHH-HHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcccc
Q 020863          139 LAVAGTNAVGTIVGIYLIDHFG--RKKLALSSLAGVIISLVLL-SWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG  215 (320)
Q Consensus       139 ~~~~~~~~~~~l~~g~l~Dr~g--rR~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (320)
                      ....++.++++++.|+...|.+  ||+++. +.+.++++.++. ...+.  +.   +.  .++.+++-.  ...++.+..
T Consensus        78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~-s~ii~~~g~llY~~l~~~--~~---~~--~y~mL~~R~--l~Gvg~~n~  147 (488)
T KOG2325|consen   78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIV-SFLIAIIGNLLYLALAYV--PN---GV--KYLMLVARI--LTGVGVGNF  147 (488)
T ss_pred             HHHHHHHHhcchhhcccccccCCcccCHHH-HHHHHHHHHHHHHHHHhc--cc---ch--HHHHHHHHH--HcCcCcccH
Confidence            3345557889999999999988  666654 444444444443 33221  11   11  122222222  122223333


Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHH---HHHHH---------hc-chhHHHHHHHHHHHHHHHHHh
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL---TVAEL---------VG-TGATFLILAGIAVLAVVFVIL  282 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~---~~~~~---------~g-~~~~~~~~~~~~~~~~~~~~~  282 (320)
                      ...-.|.+.-.-.+.|.++.+.......++.++|+.+-+   ++.+.         .+ +..+-++.+.+.++..++..+
T Consensus       148 a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  148 AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            344467777544555555554443333344444443322   22210         01 234555666666666666666


Q ss_pred             hcccCC
Q 020863          283 FVPETQ  288 (320)
Q Consensus       283 ~~pet~  288 (320)
                      ++.|-.
T Consensus       228 ~f~E~~  233 (488)
T KOG2325|consen  228 FFKEVY  233 (488)
T ss_pred             heeecc
Confidence            676643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.03  E-value=0.019  Score=52.27  Aligned_cols=158  Identities=25%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c--chHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF---G--RKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~---g--rR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      +.+.+..|.++.+.+.+..+. .. --...++.|.++|-+   |  ||+.+..+.....++...+...  .. ...  ..
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~-~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~--~~-~~~--s~   86 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLA-SL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL--PA-SES--SA   86 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHH-hC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc--cc-ccc--hh
Confidence            455667888766544433222 11 123456889999975   3  4444444443333323222211  11 000  11


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccC---CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVY---PEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAG  271 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf---P~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  271 (320)
                        ....+...+ ..+.....-.+.-+...|..   |.+ |+...+.+.....+|++++..+-.++.+..+....|.+.+.
T Consensus        87 --~~~~~~l~l-a~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~  162 (433)
T PF03092_consen   87 --AIAVVLLFL-ASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA  162 (433)
T ss_pred             --hhHHHHHHH-HHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence              111111111 11111111223345555654   555 77777777777778888877776667776666667777666


Q ss_pred             HHHHHHHHHHhhcccCC
Q 020863          272 IAVLAVVFVILFVPETQ  288 (320)
Q Consensus       272 ~~~~~~~~~~~~~pet~  288 (320)
                      +..+..+...++.+|.+
T Consensus       163 ~~~l~~~~~~~~~~e~~  179 (433)
T PF03092_consen  163 LPLLMLIVALFLLEERK  179 (433)
T ss_pred             HHHHHHHHHHHhhhhcc
Confidence            66666555666677633

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.03  E-value=0.00015  Score=67.47  Aligned_cols=73  Identities=16%  Similarity=0.277  Sum_probs=0.0

Q ss_pred             chhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020863           83 RYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFG  160 (320)
Q Consensus        83 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~g  160 (320)
                      ..+++++||.+....+.     .............|.|.++| +++.+......+.........++|.+++|+++.|+.
T Consensus       297 ~l~~Ll~Np~f~~~~la-----~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  297 ALKRLLTNPVFMCLILA-----GVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHhcChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            35567777765433332     22233344555667787776 567765554454444444456789999999999865

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.83  E-value=0.039  Score=42.40  Aligned_cols=128  Identities=14%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             cceeeeehHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhc
Q 020863          112 INTVMYYSPTIVQMAGFQS-----NQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG  186 (320)
Q Consensus       112 ~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~  186 (320)
                      +........+++++.+.+.     .........+..+...++++++..+.+++|.|..++.+.+...+-..    .+...
T Consensus        12 f~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~----~~~~~   87 (156)
T PF05978_consen   12 FQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA----SFFYP   87 (156)
T ss_pred             HhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHhh
Confidence            3333344455555443321     12234444455555778889999999999999987665443322211    11111


Q ss_pred             CCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 020863          187 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT  252 (320)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~  252 (320)
                      .        .+..+.+-.+. .+...-.+.....+..+..+++.|++-.|+.-.+...+.++|...
T Consensus        88 ~--------~~~l~~~s~l~-G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen   88 N--------SYTLYPASALL-GFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             h--------HHHHHHHHHHH-hhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            0        11122222121 111111222233566777777888877777666665555554443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.03  E-value=0.83  Score=41.49  Aligned_cols=129  Identities=17%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ..+..++...|.+....+.... ...+.++.++.+..++.+|+|-.+.-..+.....+++.+....+....+..  ....
T Consensus       279 ~lmt~yl~~~G~s~~~igi~R~-~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~--~~~s  355 (432)
T PF06963_consen  279 GLMTAYLKSQGYSPSVIGIFRG-LGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF--SSIS  355 (432)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc--hhhH
Confidence            3456778888988766554444 334557889999999999999877666655555555444433332222210  1111


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLI  248 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~  248 (320)
                      ...+.+.....-..-=+.--....+.-|..|.+.||...|.-+..+++...+
T Consensus       356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            1112111111111100111123456678999999999999988877766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.00  E-value=0.39  Score=40.36  Aligned_cols=121  Identities=25%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             hHHHHHHhCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          119 SPTIVQMAGFQSN--QLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       119 ~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      .+.+....+.+..  ..... .........++.++.|.+.||.|||+....+......+....  .+..  .   ..   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~--~~~~--~---~~---   93 (338)
T COG0477          25 LPLLLSTLSLSSGRLLYGLL-LSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL--ALAP--N---VG---   93 (338)
T ss_pred             HHHHHHHcCCCchhHHHHHH-HHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH--HhCc--c---ch---
Confidence            3444555444331  22232 333334456666899999999999976655443322221111  1111  0   00   


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCc-cchhhhHHHHHH-HHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPE-QYRGICGGMSAT-VNWISNLIVA  250 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~-~~R~~~~gi~~~-~~~~~~~~~~  250 (320)
                      ...................+....+.+|.+|. +.|+...+.... ....+..+++
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGP  149 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111111122222345556788899997 567777666655 3444444444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.89  E-value=0.055  Score=47.46  Aligned_cols=37  Identities=16%  Similarity=0.129  Sum_probs=30.3

Q ss_pred             hhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 020863          219 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT  255 (320)
Q Consensus       219 ~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~  255 (320)
                      ..+.+...|++.||+..|+..+.+.++-.++|..-..
T Consensus       374 t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  374 TSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            3566788899999999999999998888888776543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=0.027  Score=49.62  Aligned_cols=215  Identities=16%  Similarity=0.090  Sum_probs=101.5

Q ss_pred             chHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhcc
Q 020863           10 TWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFK   89 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (320)
                      +-+.+|++.+++.++-..+.+++-|.-+       . +                           +.+..+..+++++++
T Consensus       224 Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-------~-~---------------------------~~~~~~~~~~~~Ll~  268 (464)
T KOG3764|consen  224 GKSAPFLVLAIVLLLDGALQLLVIEPTE-------M-D---------------------------PDSTEQGTPMWSLLM  268 (464)
T ss_pred             CCcCcHHHHHHHHHHHHHHHHheeCccc-------c-C---------------------------ccccccCccHHHHHh
Confidence            5788999999999988888655433210       0 0                           001122345677787


Q ss_pred             chhhHHHHHHHHHHHHHHhhcCcceeeeehHH----HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           90 SKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT----IVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      +|..+......        ..+.....+.-|+    ..+++. .+.-..+..-++.....++++.+.|.+.||++.-+.+
T Consensus       269 dP~I~~~agai--------~~~n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl  339 (464)
T KOG3764|consen  269 DPYILLIAGAI--------TFSNSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWL  339 (464)
T ss_pred             CchHhhhhcch--------hhccchHHHhCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCchhHH
Confidence            77664332221        1111112222232    233444 2221223344455556778999999999999933333


Q ss_pred             HH--HhHHHHHHHHHHHHHHHhcCCCCCCcchh-HHHHHHHHHHHHHHhccccccchhcccccCCcc---chhhhHHHHH
Q 020863          166 LS--SLAGVIISLVLLSWAFISGSSASSSGVYG-WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQ---YRGICGGMSA  239 (320)
Q Consensus       166 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~---~R~~~~gi~~  239 (320)
                      ..  +......+..++...         +...+ ++...+.++.....-....|.. .+.-+.-..+   +=|...++..
T Consensus       340 ~~~~gl~~~G~~~~~iP~~---------~~~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad  409 (464)
T KOG3764|consen  340 LSLGGLATVGVSSGPIPFA---------TSIAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIAD  409 (464)
T ss_pred             HHHHHHHHHHHHhchhHhh---------hhHHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHH
Confidence            22  222111111111111         11111 2222222222222111112211 1111211112   3456667766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 020863          240 TVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  278 (320)
                      ..-.++..+++.+-..+.+..|+.+...+.+...++.+-
T Consensus       410 ~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap  448 (464)
T KOG3764|consen  410 AAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP  448 (464)
T ss_pred             HHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence            666667777777777777778876655555555444433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.74  E-value=0.87  Score=42.21  Aligned_cols=45  Identities=16%  Similarity=0.196  Sum_probs=31.6

Q ss_pred             HHHhccccccchhcccccCCccchhhhHHHHHHHH-HHHHHHHHHH
Q 020863          208 AFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVN-WISNLIVAQT  252 (320)
Q Consensus       208 ~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~-~~~~~~~~~~  252 (320)
                      ...-.-.+|+..+..+++.|++.|+...|+-.... .+++.+++.+
T Consensus       388 t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~  433 (493)
T PRK15462        388 GFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI  433 (493)
T ss_pred             HHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344457888899999999999999988865533 4555555443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.43  E-value=0.85  Score=38.03  Aligned_cols=22  Identities=23%  Similarity=0.794  Sum_probs=17.7

Q ss_pred             CchHHHHhhhhHHHHHHHHHhh
Q 020863            9 GTWRWMLGVSAVPAIIQFVLML   30 (320)
Q Consensus         9 ~~WR~~f~i~~~~~l~~~~~~~   30 (320)
                      .+||+.+.+.+++.++-++...
T Consensus        38 ~~W~~I~si~~lL~~IpLIly~   59 (267)
T PF07672_consen   38 NNWQWILSIFILLIFIPLILYI   59 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999988887776643

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.34  E-value=2.2  Score=39.03  Aligned_cols=127  Identities=15%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchHHHHHHhHHHHHHHHHHHHHHHhcC----CCCCC---cch
Q 020863          126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH---FGRKKLALSSLAGVIISLVLLSWAFISGS----SASSS---GVY  195 (320)
Q Consensus       126 ~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr---~grR~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~  195 (320)
                      .+.+.........+..+...+++.+..+.+.+|   +||++....+.....+..++.......-.    +....   ...
T Consensus       273 ~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~  352 (461)
T KOG3098|consen  273 LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPS  352 (461)
T ss_pred             ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccc
Confidence            343333333444555555566667777777655   66777666554443333333222111000    00000   000


Q ss_pred             hHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 020863          196 GWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL  254 (320)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~  254 (320)
                      ..+.+++. +...+.=.-...+.+.+...++ ++.|..+.++.-....+.+.++....+
T Consensus       353 ~~~~~ii~-~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  353 YYLALIIG-FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             hhHHHHHH-HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            11222211 1111211122345567778888 455877777776666666554433333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.20  E-value=0.046  Score=50.05  Aligned_cols=126  Identities=16%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcccccc
Q 020863          138 SLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPV  217 (320)
Q Consensus       138 ~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (320)
                      .+...+..++..+..+++++|+|+-+++..++.+...=.    ..++..+++       |..+..-.+-.+..+.. +..
T Consensus       412 ~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf----~~~S~L~n~-------W~vLPieilqgit~ali-Waa  479 (618)
T KOG3762|consen  412 SALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRF----LYYSYLQNP-------WMVLPIEILQGITHALI-WAA  479 (618)
T ss_pred             hhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHH----HHHHHhcCc-------hheeeHHHHHHHHHHHH-HHH
Confidence            333344466778888999999999887654433222211    122222222       22221111111222211 222


Q ss_pred             chhcccccCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 020863          218 PWTLNSEVYPEQYRGICGGMSATVNW-ISNLIVAQTFLTVAELVGTGATFLILAGIAVL  275 (320)
Q Consensus       218 ~~~~~~ElfP~~~R~~~~gi~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  275 (320)
                      ..+|++...|++.|+++.|+....-. +|-.+|+.+-..+.+..+....|-.++..+++
T Consensus       480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            34788899999999999988654422 22223333333344445544445444444443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.18  E-value=2.6  Score=38.87  Aligned_cols=41  Identities=5%  Similarity=0.023  Sum_probs=35.1

Q ss_pred             cchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          217 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA  257 (320)
Q Consensus       217 ~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~  257 (320)
                      +.|..++|+++.+.-.+-.++....++++.++++.+...+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66899999999988888999999999999999887766554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.15  E-value=0.65  Score=41.52  Aligned_cols=135  Identities=14%  Similarity=0.037  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhhcchHHHHHHhHHHH-HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhccc
Q 020863          145 NAVGTIVGIYLIDHFGRKKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNS  223 (320)
Q Consensus       145 ~~~~~l~~g~l~Dr~grR~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (320)
                      .++-+++-|-++|+-|+|+-....+.... ++...+.+   . .+.  +.   +...+.+.........+......++.+
T Consensus        71 ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~---i-~~~--s~---~~~~l~~~il~~i~~~~s~Vfyds~L~  141 (438)
T COG2270          71 IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWF---I-PPG--SY---LLLLLLFLILASIGFEFSNVFYDSMLP  141 (438)
T ss_pred             HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH---h-CCC--ch---HHHHHHHHHHHHHhcchhheehhhHhh
Confidence            44556677899999998876553332222 22222211   1 111  11   222222222222222223344457888


Q ss_pred             ccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHhcchhHHHHHHHHHHHHHHHHHhhcc
Q 020863          224 EVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA------------------ELVGTGATFLILAGIAVLAVVFVILFVP  285 (320)
Q Consensus       224 ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~p  285 (320)
                      ++.+++.-++.+++....+.+++.+.-.......                  +......++.+.++..++..+-.++..|
T Consensus       142 ~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~  221 (438)
T COG2270         142 RLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVH  221 (438)
T ss_pred             hhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccc
Confidence            8888877777777776666666654322211110                  1111234555666666666666666666


Q ss_pred             cCC
Q 020863          286 ETQ  288 (320)
Q Consensus       286 et~  288 (320)
                      +..
T Consensus       222 ~~~  224 (438)
T COG2270         222 DAE  224 (438)
T ss_pred             ccc
Confidence            554

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.90  E-value=0.087  Score=48.07  Aligned_cols=50  Identities=14%  Similarity=0.092  Sum_probs=25.4

Q ss_pred             hcCcceeeeehHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020863          109 FTGINTVMYYSPTIVQMAGFQSN-QLALLLSLAVAGTNAVGTIVGIYLIDHF  159 (320)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~g~l~Dr~  159 (320)
                      .+|++-+..|...+-+....+.+ ..+... ......++++++..|++-.+.
T Consensus       275 ~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~ve-A~~tllga~~a~~ag~~~~~w  325 (511)
T TIGR00806       275 SAGYYLITYYVHTLWGTLDESLNKYNGAVD-AASTLLGAITSFIAGFVNIRW  325 (511)
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccccCCHHH-HHHHHHHHHHHHHHHhhcCCc
Confidence            34555555566666655533221 112222 233334677888888884444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.41  E-value=2.8  Score=38.52  Aligned_cols=121  Identities=17%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             HHhCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Q 020863          124 QMAGFQSNQLALLLSLAVAGTNAVGTIVGI-YLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIG  202 (320)
Q Consensus       124 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g-~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (320)
                      ..++.+....+........ ...++.++.. .+...+|-|+....+...-.+......+.  +.      .   |.....
T Consensus       270 ~~f~w~~~~~s~~~~~~~~-~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~------~---w~~~~~  337 (463)
T KOG2816|consen  270 AKFGWNKKEFSDLLSLVSI-LGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TE------T---WMMFAA  337 (463)
T ss_pred             eecCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--cc------c---hhhhHH
Confidence            3456665555544443333 3566666554 78888998886665555444444443332  11      1   111111


Q ss_pred             HHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          203 LALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE  258 (320)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~  258 (320)
                      ..+  ..+.....+...+..+-+..++.+|++.++...+..+.+++++..+..+..
T Consensus       338 ~v~--~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  338 GVV--VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHH--HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            111  112223344555677778889999999999999988988888888776644

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.88  E-value=0.034  Score=49.79  Aligned_cols=131  Identities=14%  Similarity=0.097  Sum_probs=62.1

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchHHHHH-HhHHHHHHHHHHHHHHHh----cC
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH----FGRKKLALS-SLAGVIISLVLLSWAFIS----GS  187 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr----~grR~~~~~-~~~~~~~~~~~~~~~~~~----~~  187 (320)
                      .|.|-++++.|...+-.+. .....-+.+.+..++.|..+||    +||||.++. +.....++++.+.+.-..    ..
T Consensus        53 sy~tPyl~~lGvphk~~S~-iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   53 SYLTPYLQSLGVPHKWSSI-IWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             ccccHHHHHcCCCcccccc-cccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            3455566777765432211 1122222345666778899995    898886543 333444444444333211    11


Q ss_pred             CCCC--CcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhh-hHHHHHHHHHHHHHHH
Q 020863          188 SASS--SGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGI-CGGMSATVNWISNLIV  249 (320)
Q Consensus       188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~-~~gi~~~~~~~~~~~~  249 (320)
                      ....  ......+.++++.++-.....-.+| .-++..++.-.+.+.+ +.+.......+|+.++
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp-~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG  195 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGP-CRALLADLARGDAKKTRANSVFSFFMAVGNVLG  195 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhh-HHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence            1111  1111222333333332222122222 2467788886666655 6655555555555543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.77  E-value=0.011  Score=55.26  Aligned_cols=64  Identities=19%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHH
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL  179 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~  179 (320)
                      ...-.+++.+.+++++.+.+. .....-+..++..++..++.+|-.|-+++..+.+..+++.++.
T Consensus        22 ~~~~lttiErRF~l~S~~~G~-i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen   22 VNSSLTTIERRFGLSSSQSGL-ISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence            334456788888988776544 4445555566777777788888555556666655555555444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.65  E-value=0.82  Score=31.03  Aligned_cols=61  Identities=20%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHH
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL  179 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~  179 (320)
                      ..|.+.++.+++..+. .+....+.+...+|.+...++.++..+|+.+..+.+.+.++...+
T Consensus        14 lLP~M~~~~~ls~~~a-g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQA-GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             HhHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            4577888888876654 445556667788888888888888776777666655554444433

Note that many members are hypothetical proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.23  E-value=6  Score=35.64  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHH
Q 020863          146 AVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL  179 (320)
Q Consensus       146 ~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~  179 (320)
                      .+..+....+.|.+|.|++++...+...++..++
T Consensus        55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll   88 (412)
T PF01770_consen   55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL   88 (412)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            4455667789999999999887666555544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.46  E-value=2.4  Score=38.96  Aligned_cols=48  Identities=21%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             ehHHHHHH--hCCCCcHHHHH--HHHHHHHHHHHHH-HHHHHHHhhhcchHHHH
Q 020863          118 YSPTIVQM--AGFQSNQLALL--LSLAVAGTNAVGT-IVGIYLIDHFGRKKLAL  166 (320)
Q Consensus       118 ~~~~~~~~--~g~~~~~~~~~--~~~~~~~~~~~~~-l~~g~l~Dr~grR~~~~  166 (320)
                      -.|.++++  .+.+-.+++..  .+.+... ..+-+ ++=...+.|+|||+..+
T Consensus        22 siPflL~~~~~~~sy~q~~~fSla~~PfSl-KlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen   22 SIPFLLQSMAKKVSYSQQAIFSLASYPFSL-KLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             cchhhhccccCCCChhHheeeeeeechhHH-HHhhhhhhhhhcccccCCcchhh
Confidence            45888887  45443333221  1223333 33333 34456677999998644

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.15  E-value=0.009  Score=50.16  Aligned_cols=41  Identities=5%  Similarity=-0.043  Sum_probs=29.3

Q ss_pred             hhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          219 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL  259 (320)
Q Consensus       219 ~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~  259 (320)
                      ..|+.--|.-+.-+.+.|+..+++++|+.+.-.+.+++.+.
T Consensus       158 N~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  158 NKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             cceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            34556667777788899999999999987655555554443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=92.02  E-value=8.8  Score=34.41  Aligned_cols=57  Identities=16%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             HHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcchHHHHHHhHHHHHHHHHHH
Q 020863          123 VQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID-HFGRKKLALSSLAGVIISLVLLS  180 (320)
Q Consensus       123 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~D-r~grR~~~~~~~~~~~~~~~~~~  180 (320)
                      -+.+|++..+.+... ........+|..+.|++.. |.++++....++..+.++...+.
T Consensus       236 g~Vfgmsv~eTT~Lt-a~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii  293 (403)
T PF03209_consen  236 GEVFGMSVGETTRLT-AFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII  293 (403)
T ss_pred             hHHcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            345677776655544 4455556788877777766 67777776666666655555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=91.91  E-value=0.29  Score=43.85  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=20.4

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChH
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPR   37 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~   37 (320)
                      ..+-+.++.++.....+.+++..++|-.++
T Consensus       157 ~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  157 GVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            345777777777766666666677777654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.89  E-value=9.8  Score=34.69  Aligned_cols=52  Identities=8%  Similarity=0.088  Sum_probs=30.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 020863          231 RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL  282 (320)
Q Consensus       231 R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  282 (320)
                      ++...+.+..+=-...+++|.+...+....+......+.++..+++.+.=++
T Consensus       147 La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~  198 (432)
T PF06963_consen  147 LARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF  198 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444567778887777776666555556666666666554333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=91.12  E-value=0.26  Score=45.35  Aligned_cols=57  Identities=9%  Similarity=0.133  Sum_probs=41.1

Q ss_pred             CcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 020863          111 GINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSS  168 (320)
Q Consensus       111 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~  168 (320)
                      +...+.-+++.+.+++|++......+...... ..+++.++.|+++||+.+|+.++.+
T Consensus        26 ~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~-v~~L~~P~~g~~Adr~r~~r~lllg   82 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPL-VEFLAAPLWGFLADRYRKRRPLLLG   82 (618)
T ss_pred             cccccchHHHHHHHHcCCCHHHhhhhhhHHHH-HHHHhHHHHHHHHHHHHhcCchhHH
Confidence            33445556778899999987776555544443 4789999999999999877755443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.03  E-value=11  Score=34.93  Aligned_cols=42  Identities=10%  Similarity=-0.009  Sum_probs=35.8

Q ss_pred             cchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          217 VPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE  258 (320)
Q Consensus       217 ~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~  258 (320)
                      +.|..++|+++.+.-.+-.++....++++.++++.......+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999888889999999999999988887776655

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=90.91  E-value=1.4  Score=38.25  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             hhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------hcchhHHHHHHHHHHHHHH-HHH
Q 020863          219 WTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAEL----------------VGTGATFLILAGIAVLAVV-FVI  281 (320)
Q Consensus       219 ~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~-~~~  281 (320)
                      ..+.+++.|++.+++..++...++.+|.+++|.+...+...                .++..+|++.+.+..+..+ +.+
T Consensus        32 n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        32 NPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             HHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888899899999999999999888877765521                2355666655555443333 333


Q ss_pred             hhcccCC
Q 020863          282 LFVPETQ  288 (320)
Q Consensus       282 ~~~pet~  288 (320)
                      .-+||.+
T Consensus       112 ~~~p~~~  118 (310)
T TIGR01272       112 LPLPELQ  118 (310)
T ss_pred             ccCCCCC
Confidence            3456654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.49  E-value=16  Score=34.67  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhc---CC------C
Q 020863          120 PTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISG---SS------A  189 (320)
Q Consensus       120 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~---~~------~  189 (320)
                      .++....+......+...+ ...+......+++++++|. +||-+.+..+.....++...+.......   +.      .
T Consensus        62 ~ylt~~~~~~~~~aa~~v~-~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~  140 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVN-AFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG  140 (571)
T ss_pred             HHHHHHhccchHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence            3444455555433333222 3334456777899999997 5676666655554444443333222111   10      0


Q ss_pred             C--CCcchh-HHHHHHHHHHHHHHhcccc---ccchhcccccCCccc----hh--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          190 S--SSGVYG-WIAVIGLALYIAFFAPGMG---PVPWTLNSEVYPEQY----RG--ICGGMSATVNWISNLIVAQTFLTVA  257 (320)
Q Consensus       190 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ElfP~~~----R~--~~~gi~~~~~~~~~~~~~~~~~~~~  257 (320)
                      .  ...... ...++...+.  ..+.|.+   +-.....+|-|+...    +.  +-........+++..++..+..+..
T Consensus       141 ~~~c~~~s~~q~~~~~~~l~--lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  141 GNVCESPSKLQLAVLYGALY--LIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             CCcccCcchHHHHHHHHHHH--HheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence            0  011111 1111111111  1222332   333466778887322    22  2233334445566666666666665


Q ss_pred             HHhcchhHHHHHHHHHHHHHH
Q 020863          258 ELVGTGATFLILAGIAVLAVV  278 (320)
Q Consensus       258 ~~~g~~~~~~~~~~~~~~~~~  278 (320)
                      +..+|...|.+..+...++.+
T Consensus       219 ~~~~w~lgf~i~~~~~~lai~  239 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLNALAIL  239 (571)
T ss_pred             hcccceeeccHHHHHHHHHHH
Confidence            667777777666555555444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=90.44  E-value=3.4  Score=36.76  Aligned_cols=46  Identities=20%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             ehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcchHHHH
Q 020863          118 YSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLID-----HFGRKKLAL  166 (320)
Q Consensus       118 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~D-----r~grR~~~~  166 (320)
                      -.|.+++.-+.+-.+++.......-   .---++...++|     |+|||+..+
T Consensus        52 ~iP~lL~ak~vSyt~~a~fS~ay~P---~sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQAIFSFAYWP---FSLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhHHHhcCCCcchhhhhhhhhhhhH---HHHHHHHHhhhHHHHHHhhcccccee
Confidence            5788898777765554433221110   111345556677     999998644

>PRK03612 spermidine synthase; Provisional

Probab=90.06  E-value=15  Score=34.46  Aligned_cols=23  Identities=9%  Similarity=0.148  Sum_probs=14.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Q 020863          234 CGGMSATVNWISNLIVAQTFLTV  256 (320)
Q Consensus       234 ~~gi~~~~~~~~~~~~~~~~~~~  256 (320)
                      ..|-....+.+|+++|+.+...+
T Consensus       146 ~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        146 NVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             hhhhhHhHHhHHHHHHHHHHHHH
Confidence            44555666777777776665543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.29  E-value=4.8  Score=38.96  Aligned_cols=79  Identities=19%  Similarity=0.021  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHH
Q 020863          100 GAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLL  179 (320)
Q Consensus       100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~  179 (320)
                      ...+..+.|.....++..-.+++-+.+++++.+.+. .....-+...+......|+..|..|-+++-.+.+..++..++.
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~-I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~  179 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGL-IASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF  179 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCccee-EeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence            333334444333333334455677777887665433 2223333355556666788888666666655555554444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.10  E-value=6.4  Score=35.31  Aligned_cols=27  Identities=4%  Similarity=-0.021  Sum_probs=18.5

Q ss_pred             ccchhcccccCCccchhhhHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVN  242 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~  242 (320)
                      +....++++-.|++.+..++.++...-
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl  388 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFL  388 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHH
Confidence            455678888898888876665554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=87.28  E-value=6.5  Score=34.97  Aligned_cols=64  Identities=19%  Similarity=0.017  Sum_probs=45.9

Q ss_pred             ccchhcccccCCcc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQ---YRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVF  279 (320)
Q Consensus       216 ~~~~~~~~ElfP~~---~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  279 (320)
                      +......+|.|+++   .|.+.........++|+.++....+.+.+..||...|.+.++..+++.+.
T Consensus        52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            33446777888765   34456666677788999888888888888888888888877766666553

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.69  E-value=17  Score=33.22  Aligned_cols=35  Identities=11%  Similarity=0.130  Sum_probs=22.9

Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVA  250 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~  250 (320)
                      .....+.++..+++.|..+..++...-..|-..|+
T Consensus       391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs  425 (437)
T TIGR00939       391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGA  425 (437)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778888888898877776655555544443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=86.35  E-value=0.18  Score=43.65  Aligned_cols=30  Identities=7%  Similarity=0.082  Sum_probs=2.0

Q ss_pred             ccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          216 PVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       216 ~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      .....+.++..+++.|..+..++...-..|
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~G  296 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFG  296 (309)
T ss_dssp             HHHH--------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            345677788888888877766655444333

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.23  E-value=27  Score=32.17  Aligned_cols=109  Identities=9%  Similarity=-0.070  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhcc
Q 020863          134 ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPG  213 (320)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (320)
                      .+....+......+++++++.+.|++|.|..+..+..+...  ..+.  +...+     .   +....+-.+.....+. 
T Consensus        52 Gy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~--f~~g--fl~~N-----~---y~~yfssallG~Gaal-  118 (461)
T KOG3098|consen   52 GYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAA--FPLG--FLFPN-----S---YYLYFSSALLGFGAAL-  118 (461)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHH--HHHH--HHhcc-----h---HHHHHHHHHhhhhHHh-
Confidence            34444555666789999999999999999987755433222  2222  22211     1   2222222222222221 


Q ss_pred             ccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 020863          214 MGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLT  255 (320)
Q Consensus       214 ~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~  255 (320)
                      .+.-...|.+|-.+.+.+.+-.++.-++...+.++|+..+..
T Consensus       119 lw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  119 LWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             eecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            122334688899999988888998888888887777655443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=81.80  E-value=23  Score=31.34  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=28.9

Q ss_pred             hcCcceeeeehHHHHHHhCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 020863          109 FTGINTVMYYSPTIVQMAGFQSNQL-ALLLSLAVAGTNAVGTIVGIYLIDHFGRKKL  164 (320)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~  164 (320)
                      .+|++-+.+|...+-++..-.+.+. -...-......++++.+..|++--+..|++-
T Consensus       247 scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~  303 (433)
T KOG3810|consen  247 SCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD  303 (433)
T ss_pred             hchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH
Confidence            4566656666666666554222111 0111112233356778888888666666643

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=81.08  E-value=45  Score=30.59  Aligned_cols=16  Identities=13%  Similarity=0.121  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHhhhcc
Q 020863          146 AVGTIVGIYLIDHFGR  161 (320)
Q Consensus       146 ~~~~l~~g~l~Dr~gr  161 (320)
                      .+..+.--.+..|+..
T Consensus        59 l~~~~~~~~~~~~i~~   74 (437)
T TIGR00939        59 LLFNSLNLFLIFRIPV   74 (437)
T ss_pred             HHHHHHHHHHhhccCc
Confidence            3344444455556554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=80.32  E-value=13  Score=33.58  Aligned_cols=16  Identities=6%  Similarity=0.266  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHhhhc
Q 020863          145 NAVGTIVGIYLIDHFG  160 (320)
Q Consensus       145 ~~~~~l~~g~l~Dr~g  160 (320)
                      ..+..+++.++.+|+.
T Consensus        72 ~l~~Kl~aP~fi~~v~   87 (402)
T PF02487_consen   72 SLLVKLIAPFFIHRVP   87 (402)
T ss_pred             HHHHHHHhHhhhhhcc
Confidence            3455667788889875

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=80.24  E-value=12  Score=33.74  Aligned_cols=38  Identities=16%  Similarity=0.064  Sum_probs=24.0

Q ss_pred             cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 020863          215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT  252 (320)
Q Consensus       215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~  252 (320)
                      +...+..+.|-.|++.|-.+.|.....-.+|..+++.+
T Consensus       353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll  390 (402)
T PF02487_consen  353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLL  390 (402)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33344555677788999888887665555555444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-20

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 31/301 (10%)
Query: 11  WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSA 70
           WR+M     +PA++  +L+  +PESPRWL  +  +E+A  +L KI          + L+ 
Sbjct: 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG--------NTLAT 250
Query: 71  AAEEELRK-----KKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQM 125
            A +E++      +KT   L +F    I                  IN V+YY+P + + 
Sbjct: 251 QAVQEIKHSLDHGRKTGGRLLMFGVGVI----VIGVMLSIFQQFVGINVVLYYAPEVFKT 306
Query: 126 AGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIX 185
            G  S              N   T++ I  +D FGRK L +    G+ I +  L  AF  
Sbjct: 307 LG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365
Query: 186 XXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS 245
                     G +A++ +  Y+A FA   GPV W L SE++P   RG    ++    W++
Sbjct: 366 QAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLA 418
Query: 246 NLIVAQTFLTVAE---LVG---TGATXXXXXXXXXXXXXXXXXXXPETQGLTFLEVEQMW 299
           N  V+ TF  + +   LV     G +                   PET+G T  E+E +W
Sbjct: 419 NYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALW 478
Query: 300 K 300
           +
Sbjct: 479 E 479
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-11

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 30/280 (10%)

Query: 9   GTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHL 68
             W   L    +PA    ++ LF      +  M+   +   L       I   +++    
Sbjct: 183 NDWHAAL---YMPAFCAILVALFA-----FAMMRDTPQSCGLP-----PIEEYKNDYPDD 229

Query: 69  SAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPT-IVQMAG 127
                E+    K +    V  +K +    +A      F        ++ +SPT + ++  
Sbjct: 230 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIA----NVFVYLL-RYGILDWSPTYLKEVKH 284

Query: 128 FQSNQLALLLSL-AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISG 186
           F  ++ +    L   AG    GT++  ++ D   R     + +  + +  +     +++ 
Sbjct: 285 FALDKSSWAYFLYEYAGI--PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP 342

Query: 187 SSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN 246
           +          + +I + + I F   G   +      E+ P++  G   G +    ++  
Sbjct: 343 AG------NPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395

Query: 247 LIVAQTFL-TVAELVGTGATFLILAGIAVLAVVFVILFVP 285
            + A   +    +  G    F+++ G ++LAV+ +I+ + 
Sbjct: 396 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.64
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.53
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.39
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.3
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.24
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.2
2xut_A	524	Proton/peptide symporter family protein; transport	99.15
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.11
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.06
2xut_A	524	Proton/peptide symporter family protein; transport	98.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.4

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.4e-34  Score=264.85  Aligned_cols=282  Identities=32%  Similarity=0.589  Sum_probs=206.7

Q ss_pred             CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020863            8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV   87 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (320)
                      ...||+++.+..+++++.++.++++||||||+..+++.||+.+.+++.+..+..+++..+..+..+++++   .......
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  272 (491)
T 4gc0_A          196 TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK---TGGRLLM  272 (491)
T ss_dssp             TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTHHHH
T ss_pred             chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh---hhhHHHH
Confidence            3479999999999999999999999999999999999999999998876654443333322222211111   1122223


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      ++.+..    ........+.++.+++.+.+|.|.+.+..+.+... ....+.+..+...++.+++++++||+|||+.+..
T Consensus       273 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~  347 (491)
T 4gc0_A          273 FGVGVI----VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII  347 (491)
T ss_dssp             SCCTHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred             hcccHH----HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence            332222    33334456667788888888999999888876544 3445556667788999999999999999999887


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020863          168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL  247 (320)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~  247 (320)
                      +...+.++...+........       ..+..+....++...+..+.+++.|.+.+|+||++.|+++.|++...++++++
T Consensus       348 ~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~  420 (491)
T 4gc0_A          348 GALGMAIGMFSLGTAFYTQA-------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY  420 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence            77766666655544433221       12334455555666777788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH------HhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcccc
Q 020863          248 IVAQTFLTVAE------LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW  304 (320)
Q Consensus       248 ~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~~~~~  304 (320)
                      +++.++|.+.+      ..+....|++++++++++.+++++++|||||+++||||+.++++..
T Consensus       421 i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~  483 (491)
T 4gc0_A          421 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK  483 (491)
T ss_dssp             HHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence            99888876543      2345567888899999998888999999999999999999977653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.64  E-value=1.6e-16  Score=143.24  Aligned_cols=243  Identities=16%  Similarity=0.231  Sum_probs=139.4

Q ss_pred             chHHHHhhhhHHHHHHHH-HhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863           10 TWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~-~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      +||+.|++.++++++..+ .++.+||+|+....+.++++.        +.  .+.+.    ++.+++....++...++.+
T Consensus       184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~----~~~~~~~~~~~~~~~~~~~  249 (451)
T 1pw4_A          184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------ND--YPDDY----NEKAEQELTAKQIFMQYVL  249 (451)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------CC-------------------CCTHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc--------cc--ccccc----hhhhhcccccccchHHHHH
Confidence            499999999988876544 456789999764222111100        00  00000    0000001111111135567


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLA  165 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~--grR~~~  165 (320)
                      +++..+...+.....     ..+.+....+.|.++++ .|.+....+. ......+..+++.++.++++||+  |||+.+
T Consensus       250 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  323 (451)
T 1pw4_A          250 PNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSW-AYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  323 (451)
T ss_dssp             SCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             cCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence            777666544432221     12223344566777776 6766544443 44455566789999999999999  999876


Q ss_pred             HHHhHHHH-HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH
Q 020863          166 LSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI  244 (320)
Q Consensus       166 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~  244 (320)
                      ..+..... ++...    +.....   ...  +.......+ ..+...+..+..+.+..|.+|++.|+++.|+.+...++
T Consensus       324 ~~~~~~~~~~~~~~----~~~~~~---~~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  393 (451)
T 1pw4_A          324 GVFFMTLVTIATIV----YWMNPA---GNP--TVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  393 (451)
T ss_dssp             HHHHHHHHHHHHHH----TTSCCT---TCH--HHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHhcc---cCH--HHHHHHHHH-HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence            65443322 22211    111110   011  111222222 22222233444567889999999999999999999999


Q ss_pred             -HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 020863          245 -SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL  282 (320)
Q Consensus       245 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  282 (320)
                       ++.+++.+...+.+..|+...|.+.+++.+++.++..+
T Consensus       394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence             99999999888888888888888877777776665443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.53  E-value=3.7e-15  Score=133.33  Aligned_cols=141  Identities=11%  Similarity=0.053  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      ...+..+++.++.++++||+|||+.+..+.....+....+    ....     ..  +..++...+.... .....+..+
T Consensus       267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~----~~~~-----~~--~~~~~~~~l~~~~-~~~~~~~~~  334 (417)
T 2cfq_A          267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS----SFAT-----SA--LEVVILKTLHMFE-VPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----TTCC-----SH--HHHHHHTTHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH----HHhc-----cH--HHHHHHHHHHHHH-HHHHHHHHH
Confidence            3444567888999999999999998765544433332211    1111     11  1111111111111 111122346


Q ss_pred             hcccccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 020863          220 TLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF  292 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~  292 (320)
                      .+.+|.+|++.|+++.|+. +..+++++.+++.+.+.+.+..|+...|.+.+++.+++.+..+++.||++..++
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            7889999999999999985 677778888888888877777777677887777777777766667787765543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.53  E-value=2.8e-13  Score=121.52  Aligned_cols=172  Identities=17%  Similarity=0.155  Sum_probs=105.6

Q ss_pred             hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHH-HHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020863           84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR  161 (320)
Q Consensus        84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~gr  161 (320)
                      +++++++|..+...+.......     .......+.|.+ +++. |.+...... ......+..+++.+++++++||+||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~r~~~  324 (438)
T 3o7q_A          251 LSRLARIRHWRWAVLAQFCYVG-----AQTACWSYLIRYAVEEIPGMTAGFAAN-YLTGTMVCFFIGRFTGTWLISRFAP  324 (438)
T ss_dssp             HHHHTTCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHSTTCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHhChHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4456777777665444222211     112233455666 6665 766554444 4444556678999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHH
Q 020863          162 KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV  241 (320)
Q Consensus       162 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~  241 (320)
                      |+.+..+.....++...+..    ..     .   ...+....+ ..++.....+..+.+..|.+|++ |+.+.++.. .
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~----~~-----~---~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~  389 (438)
T 3o7q_A          325 HKVLAAYALIAMALCLISAF----AG-----G---HVGLIALTL-CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-M  389 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----CC-----H---HHHHHHHHH-HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-H
T ss_pred             hHHHHHHHHHHHHHHHHHHH----cC-----C---cHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-H
Confidence            99887665554444333221    11     1   111122222 22223334566678888999987 888888777 6


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHH
Q 020863          242 NWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLA  276 (320)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~  276 (320)
                      +.+++.+++.+...+.+..| +...|.+.+.+.++.
T Consensus       390 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            77888899998888888888 777777655444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.39  E-value=4.3e-12  Score=115.62  Aligned_cols=169  Identities=12%  Similarity=0.028  Sum_probs=91.2

Q ss_pred             eehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-----HHhHHHHHHHHHHHHHHHhcCCCC
Q 020863          117 YYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWAFISGSSAS  190 (320)
Q Consensus       117 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  190 (320)
                      .+.|.+.++ .+.+....... .........++.++.++++||+|||+...     .+.....++...+...........
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (491)
T 4aps_A          304 VVLATFAAERVDSSWFPVSWF-QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG  382 (491)
T ss_dssp             THHHHHHHHSCCCSSSCSGGG-TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred             HHHHHHHHHHhccCccCHHHH-hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            345555554 34332222222 23334446777888899999999986533     333333333322222211111000


Q ss_pred             CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020863          191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA  270 (320)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  270 (320)
                      ....  +.......+ .........+..+.+..|.+|++.|+++.|+.+...++++.+++.+.+.+.+ .++...|.+++
T Consensus       383 ~~~~--~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~  458 (491)
T 4aps_A          383 KVSP--LWLVGSWAL-VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFG  458 (491)
T ss_dssp             TCCT--HHHHHHHHH-HHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTH
T ss_pred             CccH--HHHHHHHHH-HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence            0111  112222222 2222233456667899999999999999999999999999988877655443 34556777777


Q ss_pred             HHHHHHHHHHHhhcccCCCC
Q 020863          271 GIAVLAVVFVILFVPETQGL  290 (320)
Q Consensus       271 ~~~~~~~~~~~~~~pet~g~  290 (320)
                      ++++++.++.+++.|+++++
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          459 LGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77777777666777776654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.36  E-value=9.9e-12  Score=111.73  Aligned_cols=165  Identities=14%  Similarity=0.096  Sum_probs=111.8

Q ss_pred             eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020863          115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV  194 (320)
Q Consensus       115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (320)
                      ...+.|.+.++. .+..+.+...+ ...+...++.+++|+++||+|||+.+..+.....++.+..........+    . 
T Consensus        47 ~~~~~~~~~~~~-~s~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----~-  119 (451)
T 1pw4_A           47 FALAMPYLVEQG-FSRGDLGFALS-GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS----I-  119 (451)
T ss_dssp             HHHHHHHTTSST-TCSSCHHHHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS----S-
T ss_pred             HHHHHHHHHHHh-ccHhHHHHHHH-HHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc----H-
Confidence            344567777777 76666555544 4455578999999999999999998887776666555544331100111    1 


Q ss_pred             hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHH
Q 020863          195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIA  273 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  273 (320)
                        +..+++ .+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..| |...|.+.+.+.
T Consensus       120 --~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~  196 (451)
T 1pw4_A          120 --AVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA  196 (451)
T ss_dssp             --SHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred             --HHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence              111111 2222222223345556888999999999999999999888998888887777677787 888888888777


Q ss_pred             HHHHHHHHhhcccCCC
Q 020863          274 VLAVVFVILFVPETQG  289 (320)
Q Consensus       274 ~~~~~~~~~~~pet~g  289 (320)
                      ++..++.++++||+..
T Consensus       197 ~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          197 ILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             HHHHHHHHHHCCCSST
T ss_pred             HHHHHHHHhhccCCHh
Confidence            7766666677887654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.30  E-value=3.8e-11  Score=107.50  Aligned_cols=134  Identities=16%  Similarity=0.035  Sum_probs=89.9

Q ss_pred             eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020863          114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG  193 (320)
Q Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (320)
                      ......|.+.++.+.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.+...... ..+     .
T Consensus        44 ~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~-----~  116 (438)
T 3o7q_A           44 LNDILLPQFQQAFTLTNFQAGLIQS-AFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIM-----N  116 (438)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHH-HHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTT-----C
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccc-----c
Confidence            3445567888889988776655444 44555788999999999999999998877766665555442211 111     1


Q ss_pred             chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020863          194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA  257 (320)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~  257 (320)
                       + +..++.. +..........+....+.+|.+|++.|+.+.|+......++..+++.+...+.
T Consensus       117 -~-~~l~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          117 -Y-TLFLVGL-FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             -H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             -H-HHHHHHH-HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1 1112222 22222222334455688899999999999999999999999998888776666

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.24  E-value=1.3e-11  Score=108.38  Aligned_cols=161  Identities=12%  Similarity=0.083  Sum_probs=108.4

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+.++.|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.........            
T Consensus        21 ~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------------   87 (375)
T 2gfp_A           21 PAIADMARDLNVREGAVQSVMG-AYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS------------   87 (375)
T ss_dssp             HHHHHHHTTSSSTTHHHHHHHH-HHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH------------
T ss_pred             hhhHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc------------
Confidence            3456677788887766554444 445557889999999999999999877766655555544433210            


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA  276 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  276 (320)
                      ...+....+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..|+...|.+.+.+.++.
T Consensus        88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  167 (375)
T 2gfp_A           88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV  167 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            11111122222222222345556788999999999999999998888888888877766666667777888777777666


Q ss_pred             HHHHHhhcccCCCC
Q 020863          277 VVFVILFVPETQGL  290 (320)
Q Consensus       277 ~~~~~~~~pet~g~  290 (320)
                      .+...+++||++.+
T Consensus       168 ~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          168 TFSMARWMPETRPV  181 (375)
T ss_dssp             HCCCCCSSCCCSTT
T ss_pred             HHHHHHHCcccCCC
Confidence            66556678887544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.20  E-value=2e-10  Score=104.56  Aligned_cols=145  Identities=12%  Similarity=0.057  Sum_probs=94.1

Q ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Q 020863          126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA  204 (320)
Q Consensus       126 ~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (320)
                      .|.+..+.+.. .....+...++.+++|+++|| +|||+.+..+.....++.+....    .++    ..  . .++.. 
T Consensus        49 ~~~s~~~~~~~-~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~~----~~--~-~~~~~-  115 (491)
T 4aps_A           49 LHITRATAASI-MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----PFG----AS--A-LFGSI-  115 (491)
T ss_dssp             CCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----CCS----TT--H-HHHHH-
T ss_pred             cCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----hhh----HH--H-HHHHH-
Confidence            67766555444 445556678999999999999 89999987766555544443221    111    11  1 11111 


Q ss_pred             HHHHHHhccccccchhcccccCCccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 020863          205 LYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL  282 (320)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~ElfP~~~--R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  282 (320)
                      +..........+....+.+|.+|++.  |+++.++.+....++..+++.+...+.+..||...|.+.+...+++.+...+
T Consensus       116 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  195 (491)
T 4aps_A          116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF  195 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            11222222234556688899999988  6667777778888888888888888888888888888776666655554443


Q ss_pred             h
Q 020863          283 F  283 (320)
Q Consensus       283 ~  283 (320)
                      .
T Consensus       196 ~  196 (491)
T 4aps_A          196 G  196 (491)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.15  E-value=4e-10  Score=103.47  Aligned_cols=151  Identities=11%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             ehHH-HHHHhC------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 020863          118 YSPT-IVQMAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSA  189 (320)
Q Consensus       118 ~~~~-~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~-grR~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
                      +.+. +.++.+      .+....+...+ .......++.+++|+++||+ |||+.+..+.....++.+.....    .  
T Consensus        34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----~--  106 (524)
T 2xut_A           34 ILTPFLMTALLLSIPEELRGAVAKDVFH-SFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----E--  106 (524)
T ss_dssp             HHHHHHHHSCSSCCSSSTTTTTHHHHHH-HHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----S--
T ss_pred             HHHHHHHHHhccccccccCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----c--
Confidence            3444 445567      67666555444 44555788999999999999 99998876655554444332211    1  


Q ss_pred             CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 020863          190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGTGATF  266 (320)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  266 (320)
                        .. . +..++. .+..........+....+.+|.+|++.|++..++   ......++..+++.+...+.+..|+...|
T Consensus       107 --~~-~-~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          107 --HS-V-QGFYTG-LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             --SC-H-HHHHHH-HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             --cc-H-HHHHHH-HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence              01 1 111222 2222222333445667889999999999876665   77777888888887777777777888888


Q ss_pred             HHHHHHHHHHHHHH
Q 020863          267 LILAGIAVLAVVFV  280 (320)
Q Consensus       267 ~~~~~~~~~~~~~~  280 (320)
                      .+.+.+.+++.+..
T Consensus       182 ~~~~~~~~~~~~~~  195 (524)
T 2xut_A          182 GIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77766666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.11  E-value=1e-11  Score=109.06  Aligned_cols=207  Identities=16%  Similarity=0.168  Sum_probs=109.8

Q ss_pred             chHHHHhhhhHHHHHHHH-HhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020863           10 TWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF   88 (320)
Q Consensus        10 ~WR~~f~i~~~~~l~~~~-~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (320)
                      +||+.|++.++..++..+ ....+||+|+..   +++                                ++...+.++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------------------~~~~~~~~~~~  196 (375)
T 2gfp_A          152 NWRACYLFLLVLCAGVTFSMARWMPETRPVD---APR--------------------------------TRLLTSYKTLF  196 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CCC--------------------------------CCTTTCSTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---ccc--------------------------------ccHHHHHHHHh
Confidence            699999999988887766 456789987541   000                                01122345566


Q ss_pred             cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020863           89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS  167 (320)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~  167 (320)
                      ++|+.+...+......     .+......+.|.++++ .|.+....+. ......+...++.++.+++.||+++|...  
T Consensus       197 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~~--  268 (375)
T 2gfp_A          197 GNSGFNCYLLMLIGGL-----AGIAAFEACSGVLMGAVLGLSSMTVSI-LFILPIPAAFFGAWFAGRPNKRFSTLMWQ--  268 (375)
T ss_dssp             HHHHHHHHHHHHHHHH-----HHHHHHHHHCSCSSHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHTTTTHHHHHHHH--
T ss_pred             cCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            6666655444322211     1112222333433333 5554333333 33344455677778888888888773222  


Q ss_pred             HhHH-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHH
Q 020863          168 SLAG-VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN  246 (320)
Q Consensus       168 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~  246 (320)
                      +... ...+...+........       ..+.......+.. +......+....+..|.+| +.|+++.|+.+....++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~  339 (375)
T 2gfp_A          269 SVICCLLAGLLMWIPDWFGVM-------NVWTLLVPAALFF-FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS  339 (375)
T ss_dssp             HHHHHHHTSSSSSHHHHHHHH-------HHHHHHHHHHHHH-HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccc-------cHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence            1111 1111111011110000       0111112222222 2222345666788899999 889999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhHHHH
Q 020863          247 LIVAQTFLTVAELVGTGATFLI  268 (320)
Q Consensus       247 ~~~~~~~~~~~~~~g~~~~~~~  268 (320)
                      .+++.+...+.+..++...+.+
T Consensus       340 ~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          340 GVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccHHHHH
Confidence            8888777776665555444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.06  E-value=2.9e-09  Score=96.78  Aligned_cols=112  Identities=15%  Similarity=0.043  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCC---CC---cchhHHHHHHHHHHHHHHhccc
Q 020863          141 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS---SS---GVYGWIAVIGLALYIAFFAPGM  214 (320)
Q Consensus       141 ~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~  214 (320)
                      ..++.++|++++|+++||+|||+.+..+.....++.+...+.........   ..   .......++..-+.......+.
T Consensus        64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~  143 (491)
T 4gc0_A           64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999988776655555444332110000000   00   0011222333333334434444


Q ss_pred             cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 020863          215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT  252 (320)
Q Consensus       215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~  252 (320)
                      .+....+.+|..|++.|+...++.......+..++...
T Consensus       144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~  181 (491)
T 4gc0_A          144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV  181 (491)
T ss_dssp             HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence            56677899999999999999888766655555554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.73  E-value=4e-08  Score=90.02  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------cc-hhHHHHHHHHHHHHHHHHHhh
Q 020863          215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV----------GT-GATFLILAGIAVLAVVFVILF  283 (320)
Q Consensus       215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~  283 (320)
                      .+..+.+..|.+|++.|+++.|+.+....+++.+++.+...+.+..          +. ...|.+++++.+++.++.+++
T Consensus       423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (524)
T 2xut_A          423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY  502 (524)
T ss_dssp             HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            4556678899999999999999999999999999888777654321          11 122566666666666666666


Q ss_pred             cccCCCCCHHH
Q 020863          284 VPETQGLTFLE  294 (320)
Q Consensus       284 ~pet~g~~~~~  294 (320)
                      .+++++++.++
T Consensus       503 ~~~~~~~~~~~  513 (524)
T 2xut_A          503 ARSYQMQDHYR  513 (524)
T ss_dssp             -----------
T ss_pred             HHHhccchhhh
Confidence            77777665544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.40  E-value=3.2e-08  Score=88.16  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=48.9

Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      .+++|+.+.........     +.++.....+.|.+++ +.|.+..+.....+ .......++.+++|+++||+|||+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~lsDr~Grr~~l   76 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFY-----FFIMGAYFPFFPIWLHDINHISKSDTGIIFA-AISLFSLLFQPLFGLLSDKLGLRKYL   76 (417)
T ss_dssp             TTSCHHHHHHHHHHHHH-----HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHH-HHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred             cccccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            56777776544432211     1122222345666555 46877666544443 44556789999999999999999987


Q ss_pred             HHHhHH
Q 020863          166 LSSLAG  171 (320)
Q Consensus       166 ~~~~~~  171 (320)
                      ..+...
T Consensus        77 ~~~~~~   82 (417)
T 2cfq_A           77 LWIITG   82 (417)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.65
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.41
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.37
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.79

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=9e-17  Score=142.18  Aligned_cols=251  Identities=15%  Similarity=0.166  Sum_probs=133.1

Q ss_pred             CCchHHHHhhhhHHHHHHHHH-hhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhh
Q 020863            8 PGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLD   86 (320)
Q Consensus         8 ~~~WR~~f~i~~~~~l~~~~~-~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (320)
                      .++||+.|++.+++.++..++ ...++|+|+.......+++..+.          .++   . .+..++....++...++
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~-~~~~~~~~~~~~~~~~~  244 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY----------PDD---Y-NEKAEQELTAKQIFMQY  244 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------------------CCTHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhc----------ccc---h-hhccccccchhhHHHHH
Confidence            357999999988887765444 55677777653222111110000          000   0 00000111111222345


Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      .++++..+..........     ...+....+.|.++++ .+.+... .........+..+++.+++|+++||++||...
T Consensus       245 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         245 VLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             TSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHBTTBSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             HHcCchHHHHHHHhhhhh-----hhhhcchhhhhhhcccccccccch-hhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence            566666554433322211     1122233445555554 4554433 44445555666789999999999999988654


Q ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHH
Q 020863          166 LSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWIS  245 (320)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~  245 (320)
                      ........+...... . ... ... ..  .+...++..+ ..+...+..+..+.+..|.+|++.|+++.|+.+..++++
T Consensus       319 ~~~~~~~~~~~~~~~-~-~~~-~~~-~~--~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~  391 (447)
T d1pw4a_         319 ATGVFFMTLVTIATI-V-YWM-NPA-GN--PTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG  391 (447)
T ss_dssp             HHHHHHHHHHHHHHH-H-TTS-CCT-TC--HHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHH-H-HHh-ccc-cc--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            433322222221111 1 111 111 11  1222222222 222333445566788899999999999999998888875


Q ss_pred             H-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcc
Q 020863          246 N-LIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVP  285 (320)
Q Consensus       246 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p  285 (320)
                      + ++++.+...+.+..|+...|.+++++.+++.++.+++.+
T Consensus       392 g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         392 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 456667777788888888887777776666665554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=6.3e-13  Score=116.99  Aligned_cols=161  Identities=15%  Similarity=0.095  Sum_probs=103.3

Q ss_pred             eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020863          117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG  196 (320)
Q Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (320)
                      ...|.+ ++.|.+..+.++..+.. .+...++.+++|+++||+|||+.+..+.....++.+............   .   
T Consensus        46 ~~~p~~-~~~g~s~~~~g~~~s~~-~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---  117 (447)
T d1pw4a_          46 LAMPYL-VEQGFSRGDLGFALSGI-SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI---A---  117 (447)
T ss_dssp             HHHHHT-TSSTTCSSCHHHHHHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS---S---
T ss_pred             HHHHHH-HHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhH---H---
Confidence            334544 45788887776655544 455789999999999999999998877766655555443322111110   0   


Q ss_pred             HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHH
Q 020863          197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV-GTGATFLILAGIAVL  275 (320)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~  275 (320)
                      .  +....+....+.....+....+.+|.+|++.|+++.|+.+....++..+++.......... +|...+.+.+.+.++
T Consensus       118 ~--~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~  195 (447)
T d1pw4a_         118 V--MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL  195 (447)
T ss_dssp             H--HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHH
Confidence            1  1111122222222233455678899999999999999988888888887776665555443 567777777666666


Q ss_pred             HHHHHHhhcccC
Q 020863          276 AVVFVILFVPET  287 (320)
Q Consensus       276 ~~~~~~~~~pet  287 (320)
                      ..++.+++.+|+
T Consensus       196 ~~~~~~~~~~~~  207 (447)
T d1pw4a_         196 VALFAFAMMRDT  207 (447)
T ss_dssp             HHHHHHHHCCCS
T ss_pred             HHHHHHHhcccc
Confidence            666666666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1e-12  Score=113.62  Aligned_cols=143  Identities=13%  Similarity=0.069  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020863          140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW  219 (320)
Q Consensus       140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (320)
                      ...+...++..+.+++.||.|||+.+..+.....++...+.    ...     ..  +...+...+... ......+...
T Consensus       267 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~--~~~~~~~~l~g~-~~~~~~~~~~  334 (417)
T d1pv7a_         267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS----FAT-----SA--LEVVILKTLHMF-EVPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----TCC-----CH--HHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc----ccc-----cc--chhhHHHHHHHH-HHHHHHHHHH
Confidence            34444667788889999999999987766554444333221    111     11  111222222111 1122345556


Q ss_pred             hcccccCCccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 020863          220 TLNSEVYPEQYRGICGGMSAT-VNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLE  294 (320)
Q Consensus       220 ~~~~ElfP~~~R~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~  294 (320)
                      .+..|.+|++.|+++.|+... ...++..+++.+...+.+..|+...|.+.+++.++..++..+.+++++..++++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            788999999999999998654 455788888888888888899888888888888888777778887777776643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6.5e-09  Score=89.09  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020863           87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIV-QMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA  165 (320)
Q Consensus        87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~  165 (320)
                      .+|||++|........     .+.+......+.|.++ +..|.+..+.+...+ .......++.++.|+++||+|||+.+
T Consensus         3 ~lkn~~~~~l~~~~f~-----~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s-~~~l~~~i~~~~~G~l~Dr~grr~~l   76 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFF-----YFFIMGAYFPFFPIWLHDINHISKSDTGIIFA-AISLFSLLFQPLFGLLSDKLGLRKYL   76 (417)
T ss_dssp             HHHSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred             cccCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            3567777665443211     1112222223445444 457887666555444 44555788999999999999999987


Q ss_pred             HHHhHHHHHHHHH
Q 020863          166 LSSLAGVIISLVL  178 (320)
Q Consensus       166 ~~~~~~~~~~~~~  178 (320)
                      ..+.....++...
T Consensus        77 ~~~~~~~~~~~~~   89 (417)
T d1pv7a_          77 LWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7665544444433