Citrus Sinensis ID: 020940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHccEEEccccccEEEEcccccccccccccEEEEEEEEEEEccccccccccccccccccccccccccEEEEcccEEEEEEEEccEEEEEcccccccccccccccccccEEEEEcccccccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEcccccEEEEEEEccEEEEEEEcccEEEEEEEEEcccccEEEcccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcEEEEEEEccccccccEEEcccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccccccHHHHHHHHHcccEEcccccccEEEcccccccccccccEEEEEEEEccccccccccccccccccHHHccccccccEEEEEccEEEEEEEEccEEEEEccccEEEEccccccccccEEEEEEcccccccccEEEEEccccccccccccccEEEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEEEccEEEEEEEEEccccccEcccccccccccHHHHHccccEEEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccHHHHHHHccccccHHHHHccccccccccc
Coil and Loop (DISEMBL)
mlgntfradkgsqpptkevppqefnrrvlegfqvtplwhqgcihddgrtNFAETVKSARWeystrpvygwgnvgskqnstagwlaafpvfephwqicmagglstgwiewdgerfefqdapsyseknwggafprkwFWVQCNVFEGATGEValtaggglrqlpvldsfeNAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELkattkypgttlraptseaglapackdtcfGELTLQLWERRydgtkgkmiLDVTSDMAAlevgggpwfntwkaktatpellrrtlnvpvdvdglfgfvpffkppgl
Flexible Loop (DISEMBL)
mlgntfradkgsqpptkevppqefNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFgfvpffkppgl
Low Complexity Region (SEG)
MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered region (IsUnstruct)
*************************RRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFF*****
Disordered Region (DISOPRED)
M*GNT****KG****TKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPG*
Disordered Region (DISEMBL)
********************PQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Disordered Region (DISPRO)
*LGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q94FY7	488	Tocopherol cyclase, chlor	yes	no	1.0	0.653	0.747	1e-144
Q6K7V6	470	Probable tocopherol cycla	yes	no	0.996	0.676	0.699	1e-135
Q94FY8	474	Probable tocopherol cycla	N/A	no	0.996	0.670	0.689	1e-132

>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/321 (74%), Positives = 276/321 (85%), Gaps = 2/321 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           +LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARW
Sbjct: 168 VLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARW 227

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAP
Sbjct: 228 EYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAP 287

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG
Sbjct: 288 SYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDG 347

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
            +YEFVPWNGVV WE+S WGYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+
Sbjct: 348 KMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACR 407

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTL 298
           D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L
Sbjct: 408 DSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQAL 467

Query: 299 NVPVDVDGLFGFVPFFKPPGL 319
            VP+D++   G VPFFKPPGL
Sbjct: 468 QVPLDLESALGLVPFFKPPGL 488

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 223/319 (69%), Positives = 264/319 (82%), Gaps = 1/319 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLGNTF  + GS PP  EVPPQEF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARW
Sbjct: 153 MLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARW 212

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++AP
Sbjct: 213 EYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAP 272

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
           SYSEKNWG  FPRKW+WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G 
Sbjct: 273 SYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGK 332

Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
            YEFVPW G VSW+I+ WG+W  + EN+ H+VE++ATTK PGT LRAPT EAGL PACKD
Sbjct: 333 FYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKD 392

Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
           TC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPWFN WK  T + E++   +  
Sbjct: 393 TCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGT 452

Query: 301 PVDVDGLFGFVPFFKPPGL 319
            VDV+ LF  +PF KPPGL
Sbjct: 453 QVDVESLFP-IPFLKPPGL 470

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1

 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 220/319 (68%), Positives = 264/319 (82%), Gaps = 1/319 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLGNTF ++K S PP  EVPPQ+F+RRVLEG QVTP+WHQG I DDGR+N+   V++ARW
Sbjct: 157 MLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFIRDDGRSNYVPNVQTARW 216

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLSTGWIEWDGERFEF++AP
Sbjct: 217 EYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLSTGWIEWDGERFEFENAP 276

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
           SYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR++ + D++E+ ++IGIHY+G 
Sbjct: 277 SYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKIGLGDTYESPSLIGIHYEGQ 336

Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
            +EFVPW G VSW+I  WG W  + EN+TH+VE++ATT   GT LRAPT EAGL PACKD
Sbjct: 337 FFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGTALRAPTIEAGLVPACKD 396

Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
           TC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPWFN WK  T   E++   +  
Sbjct: 397 TCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWKGTTVVNEVVNNIVGT 456

Query: 301 PVDVDGLFGFVPFFKPPGL 319
           PVDV+ L   +PF KPPGL
Sbjct: 457 PVDVESLLP-IPFLKPPGL 474

Involved in the synthesis of both tocopherols and tocotrienols (vitamin E), which presumably protect photosynthetic complexes from oxidative stress. Catalyzes the conversion of 2-methyl-6-phytyl-1,4-hydroquinone and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (DMPQ) to delta- and gamma-tocopherol respectively. Converts also 2,3-dimethyl-5-geranylgeranyl-1,4-hydroquinone (DMGQ) to gamma-tocotrienol.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
219842174	508	tocopherol cyclase [Hevea brasiliensis]	1.0	0.627	0.818	1e-157
33188419	515	tocopherol cyclase [Eucalyptus gunnii]	1.0	0.619	0.8	1e-154
255551000	505	Tocopherol cyclase, chloroplast precurso	1.0	0.631	0.784	1e-152
225429977	502	PREDICTED: tocopherol cyclase, chloropla	1.0	0.635	0.787	1e-152
356507907	489	PREDICTED: tocopherol cyclase, chloropla	1.0	0.652	0.775	1e-150
356515597	480	PREDICTED: tocopherol cyclase, chloropla	1.0	0.664	0.771	1e-149
388502842	479	unknown [Medicago truncatula]	1.0	0.665	0.768	1e-147
159792908	494	chloroplast tocopherol cyclase [Sesamum	0.996	0.643	0.761	1e-147
449511741	419	PREDICTED: tocopherol cyclase, chloropla	0.996	0.758	0.761	1e-145
377657553	490	tocopherol cyclase [Brassica napus]	1.0	0.651	0.766	1e-145

>gi|219842174|dbj|BAH10644.1| tocopherol cyclase [Hevea brasiliensis]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/320 (81%), Positives = 290/320 (90%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLGNTF A+KG QPP+KEVPPQEFNR V EGFQVTPLW+QG I DDGR+++ +TVK+ARW
Sbjct: 189 MLGNTFVAEKGMQPPSKEVPPQEFNRMVSEGFQVTPLWNQGFIRDDGRSDYVKTVKTARW 248

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMA GLSTGWIEWDGERFEF+DAP
Sbjct: 249 EYSTRPVYGWGNVGSKQQSTAGWLAAFPVFEPHWQICMAAGLSTGWIEWDGERFEFKDAP 308

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFW QCN FEGA+GEVALT GGGLRQLP L ++FENAA+IG+HYDG
Sbjct: 309 SYSEKNWGGGFPRKWFWAQCNTFEGASGEVALTVGGGLRQLPGLTETFENAALIGVHYDG 368

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
           I YEFVPW GVV+WEIS WGYW+  AEN+TH+VEL+ATTK PGTTLRAPT+EAGLAPACK
Sbjct: 369 IFYEFVPWKGVVTWEISPWGYWFVTAENETHLVELEATTKDPGTTLRAPTTEAGLAPACK 428

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           DTC+G L L+LWERRYDG+KGK+ILDVTSDMAA+EVGGGPWFNTWK KT TPELL R L 
Sbjct: 429 DTCYGVLKLKLWERRYDGSKGKIILDVTSDMAAVEVGGGPWFNTWKGKTTTPELLSRALR 488

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           VP+DVDG+F F+P FKPPGL
Sbjct: 489 VPLDVDGIFNFLPLFKPPGL 508

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33188419|gb|AAP97931.1| tocopherol cyclase [Eucalyptus gunnii]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 256/320 (80%), Positives = 287/320 (89%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           +LGNTF A+K ++PP KEVPPQEFN+RV EGFQV+PLWHQG I DDGR+++ ETVK+ARW
Sbjct: 196 ILGNTFMAEKDAKPPNKEVPPQEFNKRVAEGFQVSPLWHQGFIRDDGRSDYVETVKTARW 255

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWGN GS+Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEW+GERFEFQDAP
Sbjct: 256 EYSTRPVYGWGNAGSQQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWEGERFEFQDAP 315

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGGAFPRKWFWVQCNVFEGA GEVALTA GGLRQLP L ++FENAA+IG+HYDG
Sbjct: 316 SYSEKNWGGAFPRKWFWVQCNVFEGAKGEVALTAAGGLRQLPGLTETFENAALIGVHYDG 375

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
           I YEFVPWNGVVSWE++ WG WY  A+N+TH V ++ATTK  GTTLRAPT EAGLAPAC 
Sbjct: 376 IFYEFVPWNGVVSWEVAPWGSWYMEADNETHKVVVEATTKDRGTTLRAPTVEAGLAPACN 435

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           DTCFG+L LQ+WERRYDG+KGK+ILDVTS+MAA+E+GGGPWF+TWK KT+TPELL R L 
Sbjct: 436 DTCFGDLKLQIWERRYDGSKGKLILDVTSNMAAVEIGGGPWFSTWKGKTSTPELLSRALR 495

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           VPVDVDG FG  PF KPPGL
Sbjct: 496 VPVDVDGFFGLAPFLKPPGL 515

Source: Eucalyptus gunnii

Species: Eucalyptus gunnii

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551000|ref|XP_002516548.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis] gi|223544368|gb|EEF45889.1| Tocopherol cyclase, chloroplast precursor, putative [Ricinus communis]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/320 (78%), Positives = 287/320 (89%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           +LG+TF  +KG QPPTKEVPP+EFN+RV EGFQVTPLWHQG I DDGR+++ ETVK+A W
Sbjct: 186 VLGSTFVPEKGMQPPTKEVPPEEFNKRVSEGFQVTPLWHQGFIRDDGRSDYVETVKTASW 245

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRP+YGWG+V SKQ STAGWLAA PVFEPHWQICMAGGLSTGWIEWDGER+EFQDAP
Sbjct: 246 EYSTRPIYGWGDVESKQKSTAGWLAALPVFEPHWQICMAGGLSTGWIEWDGERYEFQDAP 305

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFWVQCNVFEGATGE+ALT GGGLRQLP L ++FENAA++G+HYDG
Sbjct: 306 SYSEKNWGGGFPRKWFWVQCNVFEGATGEIALTVGGGLRQLPGLTENFENAALVGVHYDG 365

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
             YEFVPWNGVV+WE+S WG+W+F AEN+TH+VEL+ATTK PGT L APT+E GLAPAC+
Sbjct: 366 NFYEFVPWNGVVNWEVSPWGHWFFTAENETHLVELEATTKDPGTPLLAPTAEVGLAPACR 425

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           DTCF +L LQ+WERRYDG+KGK+ILDVTSDMAA+EVGGGPWFNTWK KT+TPELL R L 
Sbjct: 426 DTCFADLKLQMWERRYDGSKGKLILDVTSDMAAVEVGGGPWFNTWKGKTSTPELLSRALQ 485

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           VPVD+D +  F+P FKPPGL
Sbjct: 486 VPVDMDEILSFLPLFKPPGL 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429977|ref|XP_002281424.1| PREDICTED: tocopherol cyclase, chloroplastic [Vitis vinifera] gi|296081864|emb|CBI20869.3| unnamed protein product [Vitis vinifera]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/320 (78%), Positives = 285/320 (89%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLG+TF   K  +PP KEVPP+EFNRRV+EGFQVTPLWHQG I DDGR+N+ +TVK+ARW
Sbjct: 183 MLGHTFVGRKDLRPPNKEVPPEEFNRRVIEGFQVTPLWHQGFIRDDGRSNYVDTVKTARW 242

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRP+YGWGNVGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGER+EF++AP
Sbjct: 243 EYSTRPIYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERYEFENAP 302

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFWVQCN FEGA GEV+LTA GGLR++P L + FENAA++G+HYDG
Sbjct: 303 SYSEKNWGGGFPRKWFWVQCNAFEGADGEVSLTAAGGLRKIPGLTEVFENAALVGVHYDG 362

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
           I YEFVPWNGVVSWEI+QWGYWY +AEN++HMVEL ATTK PGTTLRAPT+EAGLAPACK
Sbjct: 363 IFYEFVPWNGVVSWEINQWGYWYISAENESHMVELVATTKDPGTTLRAPTTEAGLAPACK 422

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           D C G L LQ+W+R ++G+KGKMILDVTS+MAA+EVGGGPWFNTWK KTA PEL+R  L 
Sbjct: 423 DNCSGALKLQIWKRTFNGSKGKMILDVTSNMAAVEVGGGPWFNTWKGKTAAPELVRLALQ 482

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           VPVD D +FG  PFFKPPGL
Sbjct: 483 VPVDEDAIFGLAPFFKPPGL 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507907|ref|XP_003522704.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/320 (77%), Positives = 285/320 (89%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLGNTF +++ S+PP KEVPPQEFN RVLEGFQVTPLWHQG I DDGR+N+ ETVK+ARW
Sbjct: 170 MLGNTFVSNQNSKPPNKEVPPQEFNDRVLEGFQVTPLWHQGFIRDDGRSNYVETVKTARW 229

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGER EF +AP
Sbjct: 230 EYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFDNAP 289

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLP-VLDSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLRQ+P + ++FENAA+IGIHY G
Sbjct: 290 SYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQIPGITETFENAALIGIHYGG 349

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
             YEFVPWNGVV+WE++ WGYW+ +A+N  ++VEL+ATT+ PGTTLRAPT+EAG APACK
Sbjct: 350 NFYEFVPWNGVVNWEVTTWGYWFMSADNGKYVVELEATTEDPGTTLRAPTAEAGFAPACK 409

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           DTCFG L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGGPWFNTWK KT+TP  L R L 
Sbjct: 410 DTCFGNLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGPWFNTWKGKTSTPAALSRVLE 469

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           +P+DV+G+F  VP FKPPGL
Sbjct: 470 LPIDVEGIFNPVPLFKPPGL 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515597|ref|XP_003526485.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Glycine max]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/320 (77%), Positives = 287/320 (89%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLGNTF  ++ S+PP KEVPPQEFN RVLEGFQV+PLWHQG I DDGR+N+ ETVK+ARW
Sbjct: 161 MLGNTFVPNQNSKPPNKEVPPQEFNDRVLEGFQVSPLWHQGFIRDDGRSNYVETVKTARW 220

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEWDG+R EF +AP
Sbjct: 221 EYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGKRIEFDNAP 280

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLP-VLDSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFWVQCNVFEGA+GE+ALTA GGLRQ+P + ++FENAA+IGIHY G
Sbjct: 281 SYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQIPGIAETFENAALIGIHYGG 340

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
           I YEFVPWNGVV+WE++ WGYW+ +A+N  ++VE++ATT+ PGTTLRAPT+EAGLAPACK
Sbjct: 341 IFYEFVPWNGVVNWEVTTWGYWFMSADNGRYVVEIEATTEDPGTTLRAPTAEAGLAPACK 400

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           DTCFG+L LQ+WERRYDG+KGK+ILDV+S+MAALEVGGGPWFNTWK KT+TP  L R L 
Sbjct: 401 DTCFGDLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGPWFNTWKGKTSTPAALSRVLE 460

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           +P+DV+G+F  VP FKPPGL
Sbjct: 461 LPIDVEGIFNPVPLFKPPGL 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502842|gb|AFK39487.1| unknown [Medicago truncatula]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/320 (76%), Positives = 283/320 (88%), Gaps = 1/320 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           MLGNTF A + S+PP KEVPP+EFN +VLEGFQVTPLW+QG I DDG++++ ETVK+ RW
Sbjct: 160 MLGNTFAAKQNSKPPNKEVPPKEFNDKVLEGFQVTPLWNQGFICDDGKSDYVETVKTTRW 219

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+VGS Q STAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGER EF++AP
Sbjct: 220 EYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAP 279

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGGAFPRKWFW QCNVFEGA+GE+ALTA GGLRQ+P L ++FENAA+IGIHY G
Sbjct: 280 SYSEKNWGGAFPRKWFWAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGG 339

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
             YEFVPWNGVVSWE++ WGYW+ +A+N  ++VEL+ATT+ PGTTLRAPTSEAGL+ ACK
Sbjct: 340 KFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDPGTTLRAPTSEAGLSQACK 399

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLN 299
           DTCFG L L+LWERRYDG+KGK+ILDVTSDMAALEVGGGPWFNTWK KT+TP +  R + 
Sbjct: 400 DTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVFSRAIG 459

Query: 300 VPVDVDGLFGFVPFFKPPGL 319
           +PVDVDGL+   P FKPPGL
Sbjct: 460 LPVDVDGLYNLFPLFKPPGL 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159792908|gb|ABW98674.1| chloroplast tocopherol cyclase [Sesamum indicum]

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 243/319 (76%), Positives = 280/319 (87%), Gaps = 1/319 (0%)

Query: 2   LGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWE 61
           LGNTF A +  QPP KE+PPQEFNRRV+EGFQVTPLWHQG I DDGRTN+ E VK+ARW 
Sbjct: 176 LGNTFVAQEKMQPPKKEIPPQEFNRRVVEGFQVTPLWHQGFIRDDGRTNYTEIVKTARWA 235

Query: 62  YSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPS 121
           YSTRPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEWD + +EF++APS
Sbjct: 236 YSTRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDDKLYEFKNAPS 295

Query: 122 YSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGI 180
           YSEKNWG  FPRKWFWVQCNVFEGA GEVALTA GGLRQ+P L ++FENAA+ G+HYDG 
Sbjct: 296 YSEKNWGAGFPRKWFWVQCNVFEGADGEVALTAAGGLRQVPGLSETFENAALFGVHYDGA 355

Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
            YEFVPWNGVV+WEI+ WG+W  +AEN+ + VEL+ATTK PGTTLRAPT+EAGLAP CKD
Sbjct: 356 FYEFVPWNGVVNWEIAPWGHWSISAENEMYTVELEATTKDPGTTLRAPTTEAGLAPVCKD 415

Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
           TCF +L L+LWERRYDG++GK+ILDVTS+MAA+EVGGGPWF TWK KT TPE+++R + +
Sbjct: 416 TCFADLRLRLWERRYDGSEGKVILDVTSNMAAVEVGGGPWFTTWKGKTQTPEIIKRVVGL 475

Query: 301 PVDVDGLFGFVPFFKPPGL 319
           PVDV+G+FG  PF +PPGL
Sbjct: 476 PVDVEGMFGLAPFLRPPGL 494

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511741|ref|XP_004164041.1| PREDICTED: tocopherol cyclase, chloroplastic-like [Cucumis sativus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/319 (76%), Positives = 276/319 (86%), Gaps = 1/319 (0%)

Query: 2   LGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWE 61
           LGN+F   +G +PP KEV P+EFN++V+EGFQVTPLWHQG I DDGRTN+ ETVK+ARWE
Sbjct: 101 LGNSFATKEGFKPPNKEVDPEEFNKKVVEGFQVTPLWHQGFIRDDGRTNYLETVKTARWE 160

Query: 62  YSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPS 121
           YS+RPVYGWGNVGSKQ STAGWLAAFPVFEPHWQICMAGGLSTGWIEW+ ERFEF +APS
Sbjct: 161 YSSRPVYGWGNVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWEDERFEFVNAPS 220

Query: 122 YSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGI 180
           YSEKNWGG FPRKWFWVQCNVFEGA GEVALTAGGGLRQLP L ++FENAA++G+HYDG 
Sbjct: 221 YSEKNWGGGFPRKWFWVQCNVFEGARGEVALTAGGGLRQLPGLTETFENAALVGVHYDGT 280

Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
            YEFVPWNG V+WEI+ WGYWY AAEN+TH VEL+  T  PG+ LRAPTSE GL  ACK 
Sbjct: 281 FYEFVPWNGTVNWEINTWGYWYIAAENETHKVELEGKTDEPGSPLRAPTSECGLDTACKG 340

Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
           TCFG L LQ+WERR+DG+KGK++LDVTS+MAALEVGGGPWFNTWK +T TPE+L+R L  
Sbjct: 341 TCFGTLKLQIWERRFDGSKGKIVLDVTSNMAALEVGGGPWFNTWKGETTTPEILKRALTT 400

Query: 301 PVDVDGLFGFVPFFKPPGL 319
           P+DVD  F  +P FKPPGL
Sbjct: 401 PIDVDQAFNLLPLFKPPGL 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657553|gb|AFB74210.1| tocopherol cyclase [Brassica napus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/321 (76%), Positives = 281/321 (87%), Gaps = 2/321 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
           +LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARW
Sbjct: 170 VLGNTFSAMPGARSPDKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARW 229

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW  ERFEF+DAP
Sbjct: 230 EYSTRPVYGWGDVGTKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGDERFEFRDAP 289

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGG FPRKWFWVQCNVFEGA GE+ALTA GGLRQLP L ++FENAA++ +HYDG
Sbjct: 290 SYSEKNWGGGFPRKWFWVQCNVFEGAKGEIALTAAGGLRQLPGLTETFENAALVCVHYDG 349

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
            LYEFVPWNGVVSWE+S WGYWY  AEN+THMVEL+A T   GT LRAPTSEAGLA ACK
Sbjct: 350 KLYEFVPWNGVVSWEMSPWGYWYMTAENETHMVELEARTNEAGTPLRAPTSEAGLATACK 409

Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTL 298
           D+C+GEL LQ+WERRYDG+KGK+I++  S MAA+E+GGGPWF TWK  T+ TPELL+R+L
Sbjct: 410 DSCYGELKLQIWERRYDGSKGKVIMEAKSSMAAVEIGGGPWFGTWKGDTSNTPELLKRSL 469

Query: 299 NVPVDVDGLFGFVPFFKPPGL 319
            VP+D++ +FG+VPFFKPPGL
Sbjct: 470 QVPLDLESVFGWVPFFKPPGL 490

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2125657	488	VTE1 "VITAMIN E DEFICIENT 1" [	1.0	0.653	0.747	5.5e-141
UNIPROTKB|Q6K7V6	470	VTE1 "Probable tocopherol cycl	0.996	0.676	0.699	1.6e-132

TAIR|locus:2125657 VTE1 "VITAMIN E DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 240/321 (74%), Positives = 276/321 (85%)

Query:     1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
             +LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARW
Sbjct:   168 VLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARW 227

Query:    61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
             EYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAP
Sbjct:   228 EYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAP 287

Query:   121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
             SYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG
Sbjct:   288 SYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDG 347

Query:   180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
              +YEFVPWNGVV WE+S WGYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+
Sbjct:   348 KMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACR 407

Query:   240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTL 298
             D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L
Sbjct:   408 DSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQAL 467

Query:   299 NVPVDVDGLFGFVPFFKPPGL 319
              VP+D++   G VPFFKPPGL
Sbjct:   468 QVPLDLESALGLVPFFKPPGL 488

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0009976 "tocopherol cyclase activity" evidence=IMP;IDA

GO:0010189 "vitamin E biosynthetic process" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009644 "response to high light intensity" evidence=IEP

GO:0006631 "fatty acid metabolic process" evidence=IGI

GO:0015994 "chlorophyll metabolic process" evidence=IGI

GO:0016122 "xanthophyll metabolic process" evidence=IMP

GO:0010287 "plastoglobule" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|Q6K7V6 VTE1 "Probable tocopherol cyclase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 223/319 (69%), Positives = 264/319 (82%)

Query:     1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
             MLGNTF  + GS PP  EVPPQEF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARW
Sbjct:   153 MLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARW 212

Query:    61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
             EYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++AP
Sbjct:   213 EYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAP 272

Query:   121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
             SYSEKNWG  FPRKW+WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G 
Sbjct:   273 SYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGK 332

Query:   181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
              YEFVPW G VSW+I+ WG+W  + EN+ H+VE++ATTK PGT LRAPT EAGL PACKD
Sbjct:   333 FYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKD 392

Query:   241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
             TC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPWFN WK  T + E++   +  
Sbjct:   393 TCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGT 452

Query:   301 PVDVDGLFGFVPFFKPPGL 319
              VDV+ LF  +PF KPPGL
Sbjct:   453 QVDVESLFP-IPFLKPPGL 470


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.467    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      319       319   0.00084  116 3  12 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  207 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.58u 0.09s 16.67t   Elapsed:  00:00:00
  Total cpu time:  16.58u 0.09s 16.67t   Elapsed:  00:00:00
  Start:  Fri May 10 17:08:21 2013   End:  Fri May 10 17:08:21 2013

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94FY7	TOCC_ARATH	No assigned EC number	0.7476	1.0	0.6536	yes	no
Q6K7V6	TOCC_ORYSJ	No assigned EC number	0.6990	0.9968	0.6765	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•		•	•		•	•		0.989
	HGGT	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (445 aa)	•		•			•	•		0.963
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)	•		•			•	•		0.961
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.920
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.920
	GSVIVG00025454001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (323 aa)	•		•			•	•		0.695
	GSVIVG00022014001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (291 aa)			•	•					0.527
	GSVIVG00019398001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (323 aa)			•	•					0.525
	GSVIVG00011274001	SubName- Full=Chromosome undetermined scaffold_2411, whole genome shotgun sequence; Flags- Frag [...] (182 aa)			•				•		0.512
	GSVIVG00038227001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (216 aa)			•				•		0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
PLN02818	403	PLN02818, PLN02818, tocopherol cyclase	0.0
pfam14249	331	pfam14249, Tocopherol_cycl, Tocopherol cyclase	1e-152

>gnl|CDD|215438 PLN02818, PLN02818, tocopherol cyclase

 Score =  526 bits (1358), Expect = 0.0
 Identities = 216/310 (69%), Positives = 250/310 (80%), Gaps = 3/310 (0%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
            LGNTF    GS PP  EVPP EF RRV EGFQVTP WHQG + DDGR+ +A+TVK+ARW
Sbjct: 95  ALGNTFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARW 154

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYSTRPVYGWG+VGSKQ STAGWLAA PVFEPHWQICMA GL+TGWIEW GER+EF+DAP
Sbjct: 155 EYSTRPVYGWGDVGSKQKSTAGWLAALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAP 214

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
           SYSEKNWGG FP KWFWVQCNVF+GA+G ++LTAGGGLR LP+L   FE  A+IG+HYDG
Sbjct: 215 SYSEKNWGGGFPSKWFWVQCNVFDGASG-LSLTAGGGLRGLPLLPGVFEEVALIGVHYDG 273

Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTTLRAPTSEAGLAPAC 238
             YEFVPWNG V W++S WG W   AEN+TH VEL+ATT K PGT LRAPT++ GLAP C
Sbjct: 274 KFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTVLRAPTTDVGLAPFC 333

Query: 239 KDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTL 298
           +DT  G+L LQLWER +DG+KGK+ILD TS MAA+EVGGGPW++TWK      E L+  L
Sbjct: 334 RDTFAGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLL 393

Query: 299 NVPVDVDGLF 308
            +PVDV+ +F
Sbjct: 394 GLPVDVESIF 403

Length = 403

>gnl|CDD|222624 pfam14249, Tocopherol_cycl, Tocopherol cyclase

 Score =  430 bits (1108), Expect = e-152
 Identities = 165/277 (59%), Positives = 200/277 (72%), Gaps = 14/277 (5%)

Query: 1   MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
            LG+  +     + P + +PPQEF RRV EG+Q T  W+QG I D G      T ++ RW
Sbjct: 69  ALGHWGK--TNLKLPPQYLPPQEFERRVQEGYQATATWNQGFIRDPG------TGETCRW 120

Query: 61  EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
           EYS RPVYGWG+VG  Q STAGWL+  P+FEP WQI MA GL+TGWIEW+G+R+EF++AP
Sbjct: 121 EYSIRPVYGWGDVGRPQQSTAGWLSYLPIFEPGWQILMAHGLATGWIEWNGKRYEFENAP 180

Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
           +YSEKNWGGAFPRKWFW+ CN FEG   ++ALTA GG RQ+      E+ A+IGIHY G 
Sbjct: 181 AYSEKNWGGAFPRKWFWINCNSFEGE-PDLALTAAGGRRQVLWW--MESVALIGIHYQGK 237

Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
            YEFVPWN  V+W+I+ WGYW+  AEN+ H VEL+ TT  PGT LRAPT E GL   C+D
Sbjct: 238 FYEFVPWNSQVTWQITPWGYWHMQAENERHEVELEGTTDEPGTPLRAPTEE-GLQFLCRD 296

Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG 277
           T  GEL LQLWER  DG+KGK+IL  TSD+A LEVGG
Sbjct: 297 TMKGELKLQLWER--DGSKGKVILKATSDLAGLEVGG 331

This family contains tocopherol cyclases. These enzymes are involved in the synthesis of tocopherols and tocotrienols (vitamin E). Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
PLN02818	403	tocopherol cyclase	100.0
PF14249	336	Tocopherol_cycl: Tocopherol cyclase	100.0
PF07143	312	CrtC: Hydroxyneurosporene synthase (CrtC); InterPr	96.68
PF10974	333	DUF2804: Protein of unknown function (DUF2804); In	94.56

>PLN02818 tocopherol cyclase

Probab=100.00  E-value=9.7e-104  Score=765.21  Aligned_cols=307  Identities=70%  Similarity=1.344  Sum_probs=299.7

Q ss_pred             CCCCeecccCCCCCCCCCCCcchhhhhhccceecceeeeeeeEecCCCCccccccccceeEEEEeecccCCCCCCCCCCc
Q 020940            1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNST   80 (319)
Q Consensus         1 ~~g~~f~~~~~~~~~~~~~~~~~f~~~v~~g~q~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~i~p~~g~G~~~~~~~~~   80 (319)
                      +||++|+.+.+.++++++++|++|+++|+||||+||+||||+|+|+++++|.++|+++||+|+|+|+||||+..+++++|
T Consensus        95 ~lg~~~~~~~~~~~~~~~~~p~~f~~~v~~G~q~t~~~~qG~i~d~~~~~~~~~~~~~rw~y~~~p~~gwG~~~~~~~st  174 (403)
T PLN02818         95 ALGNTFAPKNGSTPPRSEVPPDEFYRRVEEGFQVTPFWHQGRLRDDGRSPYAKTVKTARWEYSTRPVYGWGDVGSKQKST  174 (403)
T ss_pred             ccccccccccCCCCCcccCChHHHHHhhhcceeeccceecceecCCCCCccccccceEEEEEEeeeeeecCCCCCCCCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCcceEEEecCceeEEEEEECCEEEEecCCcccccCCCCCCCCCCcEEEEeccCCCCCCceEEEEcccccc
Q 020940           81 AGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQ  160 (319)
Q Consensus        81 mG~f~~lP~~e~hw~V~~~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~sFP~~w~W~Q~n~F~~~~~~~slt~aGG~~~  160 (319)
                      ||||++||||||||||+||||+++|+|+|||++|+|++++||+|||||+|||++|+|+|||+|+++++ +|||++||+|+
T Consensus       175 mGwfs~lP~fEp~wqVlmahg~asG~I~wnG~~yeF~~apgY~EKNWG~sFP~kWfWiQCN~F~~~~~-LalTagGg~r~  253 (403)
T PLN02818        175 AGWLAALPVFEPHWQICMAHGLATGWIEWGGERYEFEDAPSYSEKNWGGGFPSKWFWVQCNVFDGASG-LSLTAGGGLRG  253 (403)
T ss_pred             cchhhhcccccCcceeeecCcEEEEEEEECCEEEEecCCCeeeEccCCCCCCcCeeeEecccCCCCCc-EEEEecCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             cCcc-cccccEEEEEEEECCEEEEEecCCcceEEEEeeceeEEEEEEeCCEEEEEEEEe-cCCCCeEeCCCCCCCccccc
Q 020940          161 LPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATT-KYPGTTLRAPTSEAGLAPAC  238 (319)
Q Consensus       161 Ip~l-~~~~~~~ligl~~~Gk~y~F~t~~g~~~~~v~~~g~w~i~~~~~~~~lei~~~~-~~~g~~L~AP~~g~gm~~~c  238 (319)
                      ||++ .++++++||+|||+|++|||+||+|+++|++++|++|+|+++|++|+|+|++++ +.+++.|+||+.+.+|++.|
T Consensus       254 IP~l~~~fe~v~ligvh~~GkfYrFap~~g~v~w~v~pwg~W~i~a~n~~~~veIe~~~~~~~g~~LrAPt~~~gM~~~c  333 (403)
T PLN02818        254 LPLLPGVFEEVALIGVHYDGKFYEFVPWNGEVEWDVSPWGRWKLRAENETHEVELEATTAKEPGTVLRAPTTDVGLAPFC  333 (403)
T ss_pred             CccccccccceEEEEEEECCEEEEEEeecceEEEEEccCCcEEEEEECCCEEEEEEEEEcCCCCceEECCCCCCCCCchh
Confidence            9998 889999899999999999999999999999999999999999999999999999 55899999999886899999


Q ss_pred             cccccEEEEEEEEecccCCCCceEEEEEeeCeeEEeEeCCcccccccccccchHHHhhhcccceeccccc
Q 020940          239 KDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLF  308 (319)
Q Consensus       239 ~ES~~g~v~v~L~~~~~~~~~g~~i~d~~s~~AglEiGG~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~  308 (319)
                      +||+.|+++|+|+++.++++++++|+|++|++||||+||+||+++|+++++|+|||++|+++|||||+|+
T Consensus       334 rESl~G~l~l~L~~~~~~~~~gk~I~d~~S~~AGLEvGGgpW~~~W~~~~~~~~~~~~~~~~p~d~~~~~  403 (403)
T PLN02818        334 RDTFAGKLKLQLWERSWDGSKGKLILDATSSMAAVEVGGGPWWSTWKGTARMKEPLKSLLGLPVDVESIF  403 (403)
T ss_pred             hhcCCceEEEEEEecccCCCCCcEEEEeccCceeEEecCCcCcccccccccchhhHHHHhCCccchhhcC
Confidence            9999999999999987778888999999999999999999999999999999999999999999999985

>PF14249 Tocopherol_cycl: Tocopherol cyclase

Probab=100.00  E-value=1e-83  Score=619.66  Aligned_cols=265  Identities=52%  Similarity=1.101  Sum_probs=252.0

Q ss_pred             CCCCeeccc---CCCCCCCCCCCcchhhhhhccceecceeeeeeeEecCCCCccccccccceeEEEEeecccCCCCCCCC
Q 020940            1 MLGNTFRAD---KGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQ   77 (319)
Q Consensus         1 ~~g~~f~~~---~~~~~~~~~~~~~~f~~~v~~g~q~~~~~~~g~~~~~~~~~~~~~~~~~~W~~~i~p~~g~G~~~~~~   77 (319)
                      +||++|...   +...+++++++|++|+++|+|||||||+||||+|+|++++++|      ||+|+|+|+++||++.++|
T Consensus        69 ~lg~~~~~~~~~~~~~~~~~~~~p~~f~~~v~~g~q~t~~~~qg~~~~~~~~~~~------~w~y~i~p~~~wg~~~~~~  142 (336)
T PF14249_consen   69 ALGNLFLGHWGKTDLKPPPGYLPPQEFERRVQEGYQVTATWNQGIIRDPGTGKTC------RWDYSIKPIYGWGNSGRLQ  142 (336)
T ss_pred             ccCceeeeecccCCCCCCccccChHHhHhhhhccceeccccccCCccCCCCccEE------EEEEEEcccccCCCccccC
Confidence            688998877   6666789999999999999999999999999999999999988      9999999999999999999


Q ss_pred             CCcccccccCCCCCcceEEEecCceeEEEEEECCEEEEecCCcccccCCCCCCCCCCcEEEEeccCCCCCCceEEEEccc
Q 020940           78 NSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGG  157 (319)
Q Consensus        78 ~~~mG~f~~lP~~e~hw~V~~~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~sFP~~w~W~Q~n~F~~~~~~~slt~aGG  157 (319)
                      ++|||||++||+|||||||+||||+++|+|+|||++|+|++++||+|||||+|||++|+|+|||+|+++++ ++|+++||
T Consensus       143 ~~~mGwfs~lP~~Ec~w~V~~~~g~asG~i~~nG~~~~F~~g~gY~EKNWG~sFP~~W~W~QcN~F~~~~~-~slt~sgg  221 (336)
T PF14249_consen  143 KSIMGWFSFLPFFECYWQVLMAHGLASGWIEWNGKRYDFTGGPGYIEKNWGGSFPSKWFWIQCNSFDGEPD-VSLTASGG  221 (336)
T ss_pred             CCccchHhhccccCCCchheecCcEEEEEEEECCEEEEECCCceeeccccCcCCCCCcEEEEccccCCCCC-eEEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999998875 99999999


Q ss_pred             ccccCcccccccEEEEEEEECCEEEEEecCCcceEEEEeeceeEEEEEEeCCEEEEEEEEecCCCCeEeCCCCCCCcccc
Q 020940          158 LRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPA  237 (319)
Q Consensus       158 ~~~Ip~l~~~~~~~ligl~~~Gk~y~F~t~~g~~~~~v~~~g~w~i~~~~~~~~lei~~~~~~~g~~L~AP~~g~gm~~~  237 (319)
                      +++||++  .+.++||+||++|++|||+||++.+.++|++|++|+|+++|++|+|+|+++++.+++.|+||+.+ +|++.
T Consensus       222 ~~~i~~~--~e~~~ligi~~~Gk~YrF~p~n~~v~~~V~~~g~w~i~~~n~~~~lei~~~~~~~g~~L~AP~~~-~m~~~  298 (336)
T PF14249_consen  222 RRPIPGL--TESVGLIGIHYDGKFYRFAPYNSKVSWQVDPWGRWRIRARNRKYELEIEATTDSPGTPLRAPTEG-GMQPR  298 (336)
T ss_pred             ccccCcc--ccccEEEEEEECCEEEEEEcccceEEEEEeeCceEEEEEECCCEEEEEEEEECCCCcEEeCcCCC-CCchh
Confidence            9999977  55689999999999999999999999999999999999999999999999997678999999988 89999


Q ss_pred             ccccccEEEEEEEEecccCCCCceEEEEEeeCeeEEeEeC
Q 020940          238 CKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGG  277 (319)
Q Consensus       238 c~ES~~g~v~v~L~~~~~~~~~g~~i~d~~s~~AglEiGG  277 (319)
                      |+||+.|+++|+|++++  ++++++|++++|++||||+||
T Consensus       299 ~rEsl~g~v~v~L~~~~--~~~g~lI~~~~s~~AGLEvGG  336 (336)
T PF14249_consen  299 CRESLQGRVRVELWEKK--GKKGKLIFDGTSNLAGLEVGG  336 (336)
T ss_pred             hhccCcEEEEEEEEECc--CCCCcEEEEeecCcEEEeecC
Confidence            99999999999999954  556899999999999999998

>PF07143 CrtC: Hydroxyneurosporene synthase (CrtC); InterPro: IPR010791 This family consists of several purple photosynthetic bacterial hydroxyneurosporene synthase (CrtC) proteins

Probab=96.68  E-value=0.011  Score=56.62  Aligned_cols=57  Identities=18%  Similarity=0.408  Sum_probs=42.6

Q ss_pred             EEecCceeEEEEEECCEEEEecCCcccccCCCCCCC--CC--CcEEEEeccCCCCCCceEEEEc
Q 020940           96 ICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAF--PR--KWFWVQCNVFEGATGEVALTAG  155 (319)
Q Consensus        96 V~~~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~sF--P~--~w~W~Q~n~F~~~~~~~slt~a  155 (319)
                      -.+-+..++|+|+++|+.+.++ +.||.+||||...  +.  .|-|.+.. +++.. ++++...
T Consensus       144 ws~P~~~v~Gtl~i~g~~~~V~-G~aw~Dh~WG~~~l~~~~~gW~W~~l~-l~dg~-~l~~y~~  204 (312)
T PF07143_consen  144 WSAPRLRVSGTLTIDGKTIQVT-GTAWFDHQWGSFPLAPGQSGWDWFRLQ-LDDGR-ELMLYQL  204 (312)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEE-EEEEEEEEEESS-S-TTEEEEEEEEEE-ETTS--EEEEEEE
T ss_pred             EccccEEEEEEEEECCEEEEEe-eeEEEEEcccCccCccCCCccEEEEEE-CCCCC-EEEEEEE
Confidence            3377777899999999999998 8999999999854  23  49999996 44432 2555444

The enzyme catalyses the conversion of various acyclic carotenes including 1-hydroxy derivatives. This broad substrate specificity reflects the participation of CrtC in 1'-HO-spheroidene and in spirilloxanthin biosynthesis [].; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0016117 carotenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2ICH_B.

>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function

Probab=94.56  E-value=0.4  Score=46.83  Aligned_cols=110  Identities=15%  Similarity=0.357  Sum_probs=78.2

Q ss_pred             cCceeEEEEEECCEEEEecCCcccccCCCCCC---CCCCcEEEEeccCCC-CCCceEEEEcccccccCcccccccEEEEE
Q 020940           99 AGGLSTGWIEWDGERFEFQDAPSYSEKNWGGA---FPRKWFWVQCNVFEG-ATGEVALTAGGGLRQLPVLDSFENAAMIG  174 (319)
Q Consensus        99 ~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~s---FP~~w~W~Q~n~F~~-~~~~~slt~aGG~~~Ip~l~~~~~~~lig  174 (319)
                      ..-.++|+|.++|++|+|+...++.=-|||+.   +-..|.|.-++...+ .. .+.|-++.|... +- ..-|    -+
T Consensus       169 ~~~pv~G~v~~g~~~~~~~~~~~~a~lD~~rG~~~~~t~W~Was~sg~~~dG~-~iG~NL~~g~~d-~t-~~tE----N~  241 (333)
T PF10974_consen  169 NGLPVSGSVRLGGKEYSFDPENAFAVLDWGRGYWPRETFWNWASASGRLDDGR-RIGFNLGAGFND-GT-GATE----NA  241 (333)
T ss_pred             cCcceEEEEEECCEEEecCCCCcEEEEEcCCCccCCcCeEEEEEEEEECCCCC-EEEEEeeccccc-CC-CCcc----eE
Confidence            34456999999999999997778888889875   456799999888764 22 378888877544 21 1233    45


Q ss_pred             EEECCEEEEEecCCcceEEEEee---ceeEEEEEEeCCEEEEEEEEec
Q 020940          175 IHYDGILYEFVPWNGVVSWEISQ---WGYWYFAAENQTHMVELKATTK  219 (319)
Q Consensus       175 l~~~Gk~y~F~t~~g~~~~~v~~---~g~w~i~~~~~~~~lei~~~~~  219 (319)
                      |.++|+.+++    ..++++++.   -..|+|+-.++...|+.+-..+
T Consensus       242 l~~dG~~~kL----~~V~f~~~~~~~~~pW~i~s~dg~vdL~FtP~~~  285 (333)
T PF10974_consen  242 LWVDGKLHKL----PPVRFEYDREDPMKPWRITSDDGRVDLTFTPIFD  285 (333)
T ss_pred             EEECCEEEEC----CcEEEEecCcCCCCCeEEEcCCCeEEEEEEEeee
Confidence            7899999888    345666653   2469999887777666654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
2ich_A	335	Putative ATTH; structural genomics, joint center f	93.35

>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1

Probab=93.35  E-value=0.23  Score=47.37  Aligned_cols=55  Identities=15%  Similarity=0.417  Sum_probs=42.9

Q ss_pred             ecCceeEEEEEECCEEEEecCCcccccCCCCCCCCC----CcEEEEeccCCCCCCceEEEEc
Q 020940           98 MAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR----KWFWVQCNVFEGATGEVALTAG  155 (319)
Q Consensus        98 ~~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~sFP~----~w~W~Q~n~F~~~~~~~slt~a  155 (319)
                      .-+-.++|+|+++|+.+.++ +.+..++.||+++..    .|=|..-+ +++.. ++|+..-
T Consensus       167 ~P~l~v~Gtl~~~G~~~~V~-G~aW~DrEWss~~l~~~q~GWDWf~l~-Lddg~-~Lm~~~l  225 (335)
T 2ich_A          167 EPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGS-ALMAFQI  225 (335)
T ss_dssp             EEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSC-EEEEEEE
T ss_pred             cccEEEEEEEEECCEEEEEE-ecEEEcccCcCccCCCCCCceEEEEEE-cCCCC-cEEEEEE
Confidence            33445799999999999996 789999999999866    78898777 55554 3776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d2icha1	328	AttH-related protein NE1406 {Nitrosomonas europaea	93.19

>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406 {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: AttH-like
superfamily: AttH-like
family: AttH-like
domain: AttH-related protein NE1406
species: Nitrosomonas europaea [TaxId: 915]

Probab=93.19  E-value=0.11  Score=47.13  Aligned_cols=74  Identities=14%  Similarity=0.337  Sum_probs=54.0

Q ss_pred             CcccccccCCCCC-cceEEEecCceeEEEEEECCEEEEecCCcccccCCCCCCCCCC----cEEEEeccCCCCCCceEEE
Q 020940           79 STAGWLAAFPVFE-PHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRK----WFWVQCNVFEGATGEVALT  153 (319)
Q Consensus        79 ~~mG~f~~lP~~e-~hw~V~~~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~sFP~~----w~W~Q~n~F~~~~~~~slt  153 (319)
                      +..|....-+... ..+..+..+-.++|+|.++|+.+.++ |.+..++.||+++-..    |-|.+.+ |++.. ++|+.
T Consensus       145 G~~G~~~k~~~~~~~syyys~p~l~~~Gtl~~~g~~~~V~-G~~W~DheWgs~~l~~~~~gWdWfsl~-Lddg~-~Lm~~  221 (328)
T d2icha1         145 GENGFSRKGPGAPQASYYYSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGS-ALMAF  221 (328)
T ss_dssp             TBTTEEECSSSTTCEEEEEEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSC-EEEEE
T ss_pred             CCCceEcccCCCCcchHhhhhhheeeeeEEEEcCceEEcc-CCEEEeeeccccccccccceEEEEEEE-ECCCC-eEEEE
Confidence            4445544443222 24555666667799999999999997 7999999999987754    9999987 66555 48877


Q ss_pred             Ec
Q 020940          154 AG  155 (319)
Q Consensus       154 ~a  155 (319)
                      .-
T Consensus       222 ~l  223 (328)
T d2icha1         222 QI  223 (328)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75