Citrus Sinensis ID: 020952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHccccEEEEccHHHHHHHHHHcHHHHcccccccccccccccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEcccccccccccHHHHHHccccEEEEccEEEEEccEEEEEccccccHHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccccccccEccccEEEccccccccccccHHHHHcccccEEcccEEEEEccEEEEEccccccHHHHHHHHHccccccEEcEEEEEEEccccEccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHEHcccccHHHHHHHHHHccHHHHHHHcHHHHHHcccccHHHHHHHHHHcHcHcccccccccccc
Coil and Loop (DISEMBL)
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAAdnvgsnqlqnirrglrgdSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLqgnvgliftkgdLKEVKEEVAKYkvgaparvglvapidvvvppgntgldpsqtsffqvlniptkinkgtveiiTPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVyengsvyspevldlseDDLVEKFASSVSMVTALALAIsyptlaaapHMFVNAYKNVVAVALATeysfpqadkvkeyladpskfavaaapvagggdapaaaakeeekkeepaeesdgdmgfslfd
Flexible Loop (DISEMBL)
mvvkaskaekkiayDAKLCQLLEEYTQILVAAADnvgsnqlqnirrglrgdsvvlMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYkvgaparvglvaPIDVVVPPGNTGLDPSQTSFFQVLniptkinkgtveiITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKeeekkeepaeesdgdmgfslfd
Low Complexity Region (SEG)
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLkevkeevakykvGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFavaaapvagggdapaaaakeeekkeepaeeSDGDMGFSLFD
Disordered region (IsUnstruct)
**********KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVA**************************************
Disordered Region (DISOPRED)
******K***KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHA*KTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAV********************************MGFSLFD
Disordered Region (DISEMBL)
********EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPV**********************************
Disordered Region (DISPRO)
*****SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGG****************************L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
O04204	317	60S acidic ribosomal prot	yes	no	0.987	0.993	0.827	1e-147
P50346	320	60S acidic ribosomal prot	yes	no	1.0	0.996	0.862	1e-143
Q42112	320	60S acidic ribosomal prot	no	no	0.868	0.865	0.873	1e-143
P57691	323	60S acidic ribosomal prot	no	no	0.868	0.857	0.862	1e-142
P41095	319	60S acidic ribosomal prot	yes	no	1.0	1.0	0.793	1e-135
P50345	322	60S acidic ribosomal prot	N/A	no	0.862	0.854	0.829	1e-128
O24573	319	60S acidic ribosomal prot	N/A	no	0.996	0.996	0.789	1e-128
P29764	321	60S acidic ribosomal prot	N/A	no	0.758	0.753	0.805	1e-113
Q9DG68	315	60S acidic ribosomal prot	N/A	no	0.855	0.866	0.545	1e-83
Q9U3U0	317	60S acidic ribosomal prot	N/A	no	0.990	0.996	0.523	1e-82

>sp|O04204|RLA01_ARATH 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/319 (82%), Positives = 292/319 (91%), Gaps = 4/319 (1%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVA-AAPVAGGGDAPAAAAKEE 299
           PHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KFAVA AAPV+G       A    
Sbjct: 241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSG---ESGGAVVAV 297

Query: 300 EKKEEPAEESDGDMGFSLF 318
             +EE AEESDGDMGF LF
Sbjct: 298 AVEEEAAEESDGDMGFDLF 316

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
Arabidopsis thaliana (taxid: 3702)

>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1

 Score =  509 bits (1311), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/320 (86%), Positives = 294/320 (91%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEE 299
           PHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF   A A  A    APAAAAKEE
Sbjct: 241 PHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDDDMGFSLFD 320

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Glycine max (taxid: 3847)

>sp|Q42112|RLA02_ARATH 60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/277 (87%), Positives = 266/277 (96%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           MKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
           GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 278
           HMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Arabidopsis thaliana (taxid: 3702)

>sp|P57691|RLA03_ARATH 60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1

 Score =  503 bits (1295), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/277 (86%), Positives = 266/277 (96%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           MKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
           GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 278
           HMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct: 241 HMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Arabidopsis thaliana (taxid: 3702)

>sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/319 (79%), Positives = 291/319 (91%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           +++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVA
Sbjct: 61  LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAK
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEE 300
           PHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKFAVAA   A  G A  +AAKEEE
Sbjct: 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEE 300

Query: 301 KKEEPAEESDGDMGFSLFD 319
           KKEEP EESDGD+G SLFD
Sbjct: 301 KKEEPEEESDGDLGMSLFD 319

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/275 (82%), Positives = 246/275 (89%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  KA+KAEKKI YD KLCQLL+EYTQILV  ADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG LKEV EEVAKYKVGAPA VGLVA
Sbjct: 61  MMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA  VS       +   P  +AA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADP 275
           PH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DP
Sbjct: 241 PHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDP 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Lupinus luteus (taxid: 3873)

>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 286/319 (89%), Gaps = 1/319 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT
Sbjct: 1   MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           +++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDLKEV+EEVAKYKVGAPARVGLVA
Sbjct: 61  LIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAK
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA 
Sbjct: 181 LGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAV 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEE 300
           PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKFAV AAPVA G    +AA KEEE
Sbjct: 241 PHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKFAV-AAPVAAGDSGASAAPKEEE 299

Query: 301 KKEEPAEESDGDMGFSLFD 319
           K  EP EESD +MGFSLFD
Sbjct: 300 KAAEPEEESDEEMGFSLFD 318

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Zea mays (taxid: 4577)

>sp|P29764|RLA0_CHERU 60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/242 (80%), Positives = 221/242 (91%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGSNQLQ IR GLRGDS+VLMGKNT
Sbjct: 1   MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL +V+EE++KYKVGAPAR GLVA
Sbjct: 61  MMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAA 240

Query: 241 PH 242
           PH
Sbjct: 241 PH 242

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Chenopodium rubrum (taxid: 3560)

>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/275 (54%), Positives = 197/275 (71%), Gaps = 2/275 (0%)

Query: 4   KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
           +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct: 3   REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPID 123
           + IR H E   N+A   L+P ++GNVG +FTK DL EV++ +   KV A AR G +AP D
Sbjct: 63  KAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCD 120

Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
           V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
            PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F   V  + ++ L I YPT+A+ PH 
Sbjct: 181 SPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHS 240

Query: 244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 278
            VN YK V+A+A+ T+YSFP ADKVK +LADPS F
Sbjct: 241 VVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Rana sylvatica (taxid: 45438)

>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/319 (52%), Positives = 222/319 (69%), Gaps = 3/319 (0%)

Query: 2   VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
           +V+ +KA  K  Y  K+ +L +EY +  +  ADNVGS Q+QNIR  LRG  VVLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTM 60

Query: 62  MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAP 121
           M++ IR H E   N     L+P ++GNVG +FTKGDL EV++++ + KV APAR G +AP
Sbjct: 61  MRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAP 118

Query: 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
           + V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L
Sbjct: 119 LPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query: 182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
            I PFSYGL +  VY++GS++SPE+LD+  +DL  KF + V+ + A++L I YPT+A+AP
Sbjct: 179 NISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAP 238

Query: 242 HMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFA-VAAAPVAGGGDAPAAAAKEEE 300
           H   N +KN++A+A +TE  F QA  +KE++ DPSKF   AAA     G   AA  KEE 
Sbjct: 239 HSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKFVAAAAASAPAAGAGAAAEKKEEA 298

Query: 301 KKEEPAEESDGDMGFSLFD 319
           KKEE   E D DMGF LFD
Sbjct: 299 KKEESESEEDDDMGFGLFD 317

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Ceratitis capitata (taxid: 7213)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
225448367	320	PREDICTED: 60S acidic ribosomal protein	1.0	0.996	0.875	1e-150
6984134	317	60S acidic ribosomal protein PO [Euphorb	0.984	0.990	0.831	1e-150
15225613	317	60S acidic ribosomal protein P0-1 [Arabi	0.987	0.993	0.827	1e-146
147843260	320	hypothetical protein VITISV_003812 [Viti	1.0	0.996	0.859	1e-145
449516071	320	PREDICTED: 60S acidic ribosomal protein	1.0	0.996	0.828	1e-145
449463036	320	PREDICTED: 60S acidic ribosomal protein	1.0	0.996	0.837	1e-145
225449110	320	PREDICTED: 60S acidic ribosomal protein	1.0	0.996	0.856	1e-145
313586449	320	60S acidic ribosomal protein P0A [Hevea	1.0	0.996	0.865	1e-145
313586451	320	60S acidic ribosomal protein P0B [Hevea	1.0	0.996	0.862	1e-144
224101117	322	predicted protein [Populus trichocarpa]	1.0	0.990	0.841	1e-144

>gi|225448367|ref|XP_002268645.1| PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/320 (87%), Positives = 301/320 (94%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK SKA+KKIAYD KLCQLL+EY+QIL+AAADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYSQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAEKTGNTAFLNLIPLL GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSIRLHAEKTGNTAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+E+DL+EKFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLIEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVA-GGGDAPAAAAKEE 299
           PHMF+NAYKNV+AVA+ATEYSFPQADKVKEYL DPSKFAVA APV      A  AA+KEE
Sbjct: 241 PHMFINAYKNVLAVAVATEYSFPQADKVKEYLKDPSKFAVATAPVTASDAGAAPAASKEE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEP EESD DMGFSLFD
Sbjct: 301 EKKEEPQEESDDDMGFSLFD 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6984134|gb|AAF34767.1|AF227622_1 60S acidic ribosomal protein PO [Euphorbia esula]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/315 (83%), Positives = 294/315 (93%), Gaps = 1/315 (0%)

Query: 6   SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRT 65
           SKAEKKIAYDAKLCQLL++Y+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR+
Sbjct: 3   SKAEKKIAYDAKLCQLLDDYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 62

Query: 66  IRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVV 125
           +R+H+EKTGNTAFLNL+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAPIDVV
Sbjct: 63  VRVHSEKTGNTAFLNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVV 122

Query: 126 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 185
           VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRP
Sbjct: 123 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRP 182

Query: 186 FSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFV 245
           FSYGLVVQ+VY++G+V+SPEVL+L+EDDL+ KFA  VSM+T+LAL++SYPTLAAAPHMF+
Sbjct: 183 FSYGLVVQTVYDSGTVFSPEVLNLTEDDLMAKFAIGVSMITSLALSVSYPTLAAAPHMFI 242

Query: 246 NAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEEEKKEE 304
           NAYKNV+A+A++T+YSFPQADKVKEYLADPSKF    A   A       AA+KEEEKK+E
Sbjct: 243 NAYKNVLAIAVSTDYSFPQADKVKEYLADPSKFAVALAPVAAAAPADAPAASKEEEKKDE 302

Query: 305 PAEESDGDMGFSLFD 319
           PA+ESD D+GFSLFD
Sbjct: 303 PADESDDDLGFSLFD 317

Source: Euphorbia esula

Species: Euphorbia esula

Genus: Euphorbia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225613|ref|NP_181530.1| 60S acidic ribosomal protein P0-1 [Arabidopsis thaliana] gi|12229886|sp|O04204.1|RLA01_ARATH RecName: Full=60S acidic ribosomal protein P0-1 gi|2088654|gb|AAB95286.1| 60S acidic ribosomal protein P0 [Arabidopsis thaliana] gi|25054858|gb|AAN71918.1| putative 60S acidic ribosomal protein P0 [Arabidopsis thaliana] gi|330254669|gb|AEC09763.1| 60S acidic ribosomal protein P0-1 [Arabidopsis thaliana]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/319 (82%), Positives = 292/319 (91%), Gaps = 4/319 (1%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVA-AAPVAGGGDAPAAAAKEE 299
           PHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KFAVA AAPV+G       A    
Sbjct: 241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSG---ESGGAVVAV 297

Query: 300 EKKEEPAEESDGDMGFSLF 318
             +EE AEESDGDMGF LF
Sbjct: 298 AVEEEAAEESDGDMGFDLF 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843260|emb|CAN80537.1| hypothetical protein VITISV_003812 [Vitis vinifera]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/320 (85%), Positives = 295/320 (92%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK SKA+KKIAYD KLCQLL+EYTQIL+AAADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYTQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAEKTGN AFLNLIPLL GNVGLIFT+GDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSIRLHAEKTGNQAFLNLIPLLVGNVGLIFTRGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+E+DL+EKFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEE 299
           PHMFVNAYKNV++VA+ATEYSFPQADKVKE+L DPSKF    A   A      AA  KEE
Sbjct: 241 PHMFVNAYKNVLSVAVATEYSFPQADKVKEFLKDPSKFAVAVAPVAAADAGGSAAPPKEE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDDDMGFSLFD 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516071|ref|XP_004165071.1| PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 265/320 (82%), Positives = 296/320 (92%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKK+AYD+KLCQLL+EY+Q+LV AADNVGSNQLQNIR+GLRGDS+VLMGKNT
Sbjct: 1   MAIKPTKAEKKVAYDSKLCQLLDEYSQVLVVAADNVGSNQLQNIRKGLRGDSIVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+H+E+TGN A+LNL+PLL GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHSEQTGNKAYLNLLPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SP+VLDL+EDDL+EKFA  VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPQVLDLTEDDLLEKFALGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEE 299
           PHM +NAYKN++AVA+AT+YSFPQA+KVKEYLADPSKF    A   A  G AP AAA  E
Sbjct: 241 PHMLINAYKNLLAVAVATDYSFPQAEKVKEYLADPSKFAVAVAVSAADSGSAPEAAADVE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDDDMGFSLFD 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463036|ref|XP_004149240.1| PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/320 (83%), Positives = 299/320 (93%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKK+AYD+KLCQLL+EY+Q+LV AADNVGSNQLQNIR+GLRGDS+VLMGKNT
Sbjct: 1   MAIKPTKAEKKVAYDSKLCQLLDEYSQVLVVAADNVGSNQLQNIRKGLRGDSIVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+H+E+TGN A+LNL+PLL GNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHSEQTGNKAYLNLLPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SP+VLDL+EDDL+EKFA  VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPQVLDLTEDDLLEKFALGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVA-AAPVAGGGDAPAAAAKEE 299
           PHM +NAYKN++AVA+AT+YSFPQA+KVKEYLADPSKFAVA A   A  G AP AAA  E
Sbjct: 241 PHMLINAYKNLLAVAVATDYSFPQAEKVKEYLADPSKFAVAVAVSSADSGSAPEAAAAVE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDDDMGFSLFD 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449110|ref|XP_002276842.1| PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/320 (85%), Positives = 295/320 (92%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M VK SKA+KKIAYD KLCQLL+EYTQIL+AAADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYTQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR+IR+HAEKTGN AFLNLIPLL GNVGLIFT+GDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSIRLHAEKTGNQAFLNLIPLLVGNVGLIFTRGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SPEVLDL+E+DL+EKFA+ VSMVT+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLMEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEE 299
           PHMFVNAYKNV++VA+AT+YSFPQADKVKE+L DPSKF    A   A      AA  KEE
Sbjct: 241 PHMFVNAYKNVLSVAVATDYSFPQADKVKEFLKDPSKFAVAVAPVAAADAGGSAAPPKEE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDDDMGFSLFD 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586449|gb|ADR71235.1| 60S acidic ribosomal protein P0A [Hevea brasiliensis]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 277/320 (86%), Positives = 296/320 (92%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  K SKA+KKIAYDAKLCQLL+EY+QIL+ AADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAGKPSKADKKIAYDAKLCQLLDEYSQILIVAADNVGSNQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKRTIR+H+EKTGNTAFLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRTIRVHSEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV S Y+NGSV+SPEVLDL+EDDLVEKFA+ VSMVT+LALAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLVEKFATGVSMVTSLALAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEE 299
           PHMFVNAYKNV+A+A+ATEYSFP+A+ V+EYL DPSKF   A    A    A  AAAKEE
Sbjct: 241 PHMFVNAYKNVLAIAVATEYSFPRAETVREYLKDPSKFAVAAVPVAAADAGAAPAAAKEE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDEDMGFSLFD 320

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586451|gb|ADR71236.1| 60S acidic ribosomal protein P0B [Hevea brasiliensis]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 276/320 (86%), Positives = 296/320 (92%), Gaps = 1/320 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M  K SKA+KK+AYDAKLCQLL+EY+QIL+ AADNVGSNQLQNIR+GLRGDSVVLMGKNT
Sbjct: 1   MAGKPSKADKKMAYDAKLCQLLDEYSQILIVAADNVGSNQLQNIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKRTIR+H+EKTGNTAFLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRTIRVHSEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV S Y+NGSV+SPEVLDL+EDDLVEKFA+ VSMVT+LALAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLVEKFATGVSMVTSLALAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-AVAAAPVAGGGDAPAAAAKEE 299
           PHMFVNAYKNV+A+A+ATEYSFP+A+ V+EYL DPSKF   A    A    A  AAAKEE
Sbjct: 241 PHMFVNAYKNVLAIAVATEYSFPRAETVREYLKDPSKFAVAAVPVAAADAGAAPAAAKEE 300

Query: 300 EKKEEPAEESDGDMGFSLFD 319
           EKKEEPAEESD DMGFSLFD
Sbjct: 301 EKKEEPAEESDEDMGFSLFD 320

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101117|ref|XP_002312149.1| predicted protein [Populus trichocarpa] gi|222851969|gb|EEE89516.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/322 (84%), Positives = 298/322 (92%), Gaps = 3/322 (0%)

Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           MV K SKA+KKIAYDAKLCQLL+EY+QIL+AAADNVGS QLQNIRRGLRGDSVVLMGKNT
Sbjct: 1   MVNKLSKADKKIAYDAKLCQLLDEYSQILIAAADNVGSTQLQNIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120
           MMKR++R+H+EKTGN  FLNLIPLLQGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVA
Sbjct: 61  MMKRSVRIHSEKTGNKTFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLVV SVY+NGSV+SP VLDL+EDDLVEKFA+ ++M+T+L+LAISYPTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPTVLDLTEDDLVEKFATGITMITSLSLAISYPTLAAA 240

Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAV---AAAPVAGGGDAPAAAAK 297
           PHMF+NAYKN+++VA+ATEYS+PQA++VKE+L DPSKFAV    AA  A       AAAK
Sbjct: 241 PHMFINAYKNILSVAVATEYSYPQAEEVKEFLKDPSKFAVAAAPAAAAAAAPGGAPAAAK 300

Query: 298 EEEKKEEPAEESDGDMGFSLFD 319
           EEEKKEEPAEESD DMGFSLFD
Sbjct: 301 EEEKKEEPAEESDDDMGFSLFD 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
TAIR|locus:2061231	317	AT2G40010 [Arabidopsis thalian	0.990	0.996	0.751	1.3e-121
TAIR|locus:2083564	320	AT3G09200 [Arabidopsis thalian	0.996	0.993	0.742	5.8e-121
TAIR|locus:2074623	323	AT3G11250 [Arabidopsis thalian	0.996	0.984	0.732	4.1e-120
UNIPROTKB|P47826	316	RPLP0 "60S acidic ribosomal pr	0.984	0.993	0.487	2.1e-75
FB|FBgn0000100	317	RpLP0 "Ribosomal protein LP0"	0.990	0.996	0.463	5.7e-75
ZFIN|ZDB-GENE-000629-1	319	rplp0 "ribosomal protein, larg	0.984	0.984	0.479	4e-74
UNIPROTKB|P05388	317	RPLP0 "60S acidic ribosomal pr	0.984	0.990	0.470	1.4e-73
UNIPROTKB|F1PUX4	317	RPLP0 "Uncharacterized protein	0.984	0.990	0.466	1.7e-73
RGD|621247	317	Rplp0 "ribosomal protein, larg	0.984	0.990	0.470	1.7e-73
UNIPROTKB|Q29214	318	RPLP0 "60S acidic ribosomal pr	0.984	0.987	0.465	2.2e-73

TAIR|locus:2061231 AT2G40010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1196 (426.1 bits), Expect = 1.3e-121, P = 1.3e-121
 Identities = 239/318 (75%), Positives = 265/318 (83%)

Query:     1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
             M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct:     1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query:    61 MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVA 120
             MMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVA
Sbjct:    61 MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query:   121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
             PIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAK
Sbjct:   121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query:   181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
             LGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAA
Sbjct:   181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query:   241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXX 300
             PHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF                      
Sbjct:   241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSGESGGAVVAVAVE 300

Query:   301 XXXXXXXXSDGDMGFSLF 318
                     SDGDMGF LF
Sbjct:   301 EEAAEE--SDGDMGFDLF 316

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2083564 AT3G09200 [Arabidopsis thaliana (taxid:3702)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 236/318 (74%), Positives = 260/318 (81%)

Query:     2 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
             +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct:     1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query:    62 MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAP 121
             MKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAP
Sbjct:    61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query:   122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
             IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct:   121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query:   182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
             GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct:   181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query:   242 HMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXX 301
             HMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF                       
Sbjct:   241 HMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAKVE 300

Query:   302 XXXXXXXSDGDMGFSLFD 319
                     D    F LFD
Sbjct:   301 EKEESDEEDYGGDFGLFD 318

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2074623 AT3G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 235/321 (73%), Positives = 263/321 (81%)

Query:     2 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
             +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct:     1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query:    62 MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAP 121
             MKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAP
Sbjct:    61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query:   122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
             IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKL
Sbjct:   121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query:   182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
             GIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAP
Sbjct:   181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query:   242 HMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXX 301
             HMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF                       
Sbjct:   241 HMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAK 300

Query:   302 XXXXXXXSDGDM---GFSLFD 319
                    SD +    GF LFD
Sbjct:   301 VEEKKEESDEEDYEGGFGLFD 321

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0006414 "translational elongation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|P47826 RPLP0 "60S acidic ribosomal protein P0" [Gallus gallus (taxid:9031)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 154/316 (48%), Positives = 199/316 (62%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP D
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCD 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXX 303
              VN YK V+AVA+ T+Y+FP A+KVK +LADPS F                         
Sbjct:   241 IVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPK 300

Query:   304 XXXXXSDGDMGFSLFD 319
                  SD DMGF LFD
Sbjct:   301 EESEESDEDMGFGLFD 316

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

FB|FBgn0000100 RpLP0 "Ribosomal protein LP0" [Drosophila melanogaster (taxid:7227)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 148/319 (46%), Positives = 199/319 (62%)

Query:     2 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTM 61
             +V+ +KA  K  Y  K+ +L +E+ +  +  ADNVGS Q+QNIR  LRG +VVLMGKNTM
Sbjct:     1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query:    62 MKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAP 121
             M++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP
Sbjct:    61 MRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAP 118

Query:   122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181
             + V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L
Sbjct:   119 LHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNML 178

Query:   182 GIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAP 241
              I PFSYGL+V  VY++GS++SPE+LD+  +DL  KF   V+ + A+ L++ YPT+A+AP
Sbjct:   179 NISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAP 238

Query:   242 HMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXX 301
             H   N +KN++A+A  TE  F +A  +KEY+ DPSKF                       
Sbjct:   239 HSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAK 298

Query:   302 X-XXXXXXSDGDMGFSLFD 319
                      D DMGF LFD
Sbjct:   299 KPESESEEEDDDMGFGLFD 317

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006281 "DNA repair" evidence=NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-000629-1 rplp0 "ribosomal protein, large, P0" [Danio rerio (taxid:7955)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 153/319 (47%), Positives = 198/319 (62%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL+++ +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG- 182
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L  
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNM 180

Query:   183 --IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
               I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ 
Sbjct:   181 LNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASI 240

Query:   241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXX 300
             PH  +N YK V+AV + T+Y+FP A+KVK YLADP+ F                      
Sbjct:   241 PHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQKSAAPAAKEE 300

Query:   301 XXXXXXXXSDGDMGFSLFD 319
                     SD DMGF LFD
Sbjct:   301 APKEDSEESDEDMGFGLFD 319

GO:0005622 "intracellular" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|P05388 RPLP0 "60S acidic ribosomal protein P0" [Homo sapiens (taxid:9606)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 149/317 (47%), Positives = 198/317 (62%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXX-XXXXX 302
              +N YK V+A+++ T+Y+FP A+KVK +LADPS F                         
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300

Query:   303 XXXXXXSDGDMGFSLFD 319
                   SD DMGF LFD
Sbjct:   301 KEESEESDEDMGFGLFD 317

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1PUX4 RPLP0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 148/317 (46%), Positives = 198/317 (62%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXX-XXXXX 302
              +N YK V+A+++ T+Y+FP A+KVK +LADPS F                         
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA 300

Query:   303 XXXXXXSDGDMGFSLFD 319
                   SD DMGF LFD
Sbjct:   301 KEESEESDEDMGFGLFD 317

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|621247 Rplp0 "ribosomal protein, large, P0" [Rattus norvegicus (taxid:10116)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 149/317 (47%), Positives = 197/317 (62%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GL++Q V++NGS+YSPEVLD++E  L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXX-XXXXX 302
              +N YK V+A+++ T+Y+FP A+KVK +LADPS F                         
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFAAAAPVAAATTAAPAAAAAPAKVEA 300

Query:   303 XXXXXXSDGDMGFSLFD 319
                   SD DMGF LFD
Sbjct:   301 KEESEESDEDMGFGLFD 317

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=ISO

UNIPROTKB|Q29214 RPLP0 "60S acidic ribosomal protein P0" [Sus scrofa (taxid:9823)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 148/318 (46%), Positives = 198/318 (62%)

Query:     4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
             +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct:     3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62

Query:    64 RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct:    63 KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
             V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct:   121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query:   184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
              PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct:   181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query:   244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXX--XXXXXXXXXXXXXXXXXXX 301
              +N YK V+A+++ T+Y+FP A+KVK +LADPS F                         
Sbjct:   241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAPAKVE 300

Query:   302 XXXXXXXSDGDMGFSLFD 319
                    SD DMGF LFD
Sbjct:   301 AKEESEESDEDMGFGLFD 318

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42112	RLA02_ARATH	No assigned EC number	0.8736	0.8683	0.8656	no	no
P05388	RLA0_HUMAN	No assigned EC number	0.52	0.8557	0.8611	yes	no
O04204	RLA01_ARATH	No assigned EC number	0.8275	0.9874	0.9936	yes	no
Q95140	RLA0_BOVIN	No assigned EC number	0.5157	0.9843	0.9874	yes	no
Q29214	RLA0_PIG	No assigned EC number	0.5188	0.9843	0.9874	yes	no
P22685	RLA0_DICDI	No assigned EC number	0.4427	0.8056	0.8426	yes	no
O24573	RLA0_MAIZE	No assigned EC number	0.7899	0.9968	0.9968	N/A	no
Q8SRJ7	RLA0_ENCCU	No assigned EC number	0.3470	0.8244	0.9068	yes	no
P50345	RLA0_LUPLU	No assigned EC number	0.8290	0.8620	0.8540	N/A	no
P50346	RLA0_SOYBN	No assigned EC number	0.8625	1.0	0.9968	yes	no
O74864	RLA0_SCHPO	No assigned EC number	0.4887	0.9623	0.9839	yes	no
P29764	RLA0_CHERU	No assigned EC number	0.8057	0.7586	0.7538	N/A	no
P47826	RLA0_CHICK	No assigned EC number	0.5316	0.9843	0.9936	yes	no
Q9Y8J3	RLA0_METVO	No assigned EC number	0.3210	0.8401	0.9023	yes	no
P19889	RLA0_DROME	4, ., 2, ., 9, 9, ., 1, 8	0.5198	0.8620	0.8675	yes	no
Q9C3Z6	RLA0_PODAS	No assigned EC number	0.4624	0.8275	0.8407	yes	no
Q90YX1	RLA0_ICTPU	No assigned EC number	0.5490	0.8557	0.8611	N/A	no
Q93572	RLA0_CAEEL	No assigned EC number	0.4937	0.9780	1.0	yes	no
P14869	RLA0_MOUSE	No assigned EC number	0.5163	0.8557	0.8611	yes	no
P57691	RLA03_ARATH	No assigned EC number	0.8628	0.8683	0.8575	no	no
Q9U3U0	RLA0_CERCA	No assigned EC number	0.5235	0.9905	0.9968	N/A	no
P19945	RLA0_RAT	No assigned EC number	0.5130	0.8369	0.8422	yes	no
Q9PV90	RLA0_DANRE	No assigned EC number	0.5329	0.9843	0.9843	yes	no
P05317	RLA0_YEAST	No assigned EC number	0.4568	0.9561	0.9775	yes	no
P41095	RLA0_ORYSJ	No assigned EC number	0.7931	1.0	1.0	yes	no
Q9DG68	RLA0_RANSY	No assigned EC number	0.5454	0.8557	0.8666	N/A	no
Q8NHW5	RLA0L_HUMAN	No assigned EC number	0.5128	0.8495	0.8548	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029254001	RecName- Full=60S acidic ribosomal protein P0; (320 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)			•	•	•	•	•		0.901
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.896
	GSVIVG00017864001	RecName- Full=Ribosomal protein L19; (183 aa)			•	•	•	•	•		0.849
	GSVIVG00028043001	RecName- Full=Ribosomal protein L19; (208 aa)			•	•	•	•	•		0.848
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)	•			•	•	•	•		0.827
	GSVIVG00018191001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shot [...] (166 aa)	•		•	•	•	•	•		0.826
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)			•	•		•	•		0.825
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•	•		0.820
	GSVIVG00023193001	SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotg [...] (166 aa)	•		•	•	•	•	•		0.820
	GSVIVG00034392001	RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (97 aa)			•	•	•	•	•		0.805

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	319
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	1e-141
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	2e-82
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	2e-74
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	7e-51
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	9e-24
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	2e-23
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	9e-21
COG0244	175	COG0244, RplJ, Ribosomal protein L10 [Translation,	1e-18
cd05796	163	cd05796, Ribosomal_P0_like, Ribosomal protein L10	4e-18
cd05833	109	cd05833, Ribosomal_P2, Ribosomal protein P2	3e-13
cd05831	103	cd05831, Ribosomal_P1, Ribosomal protein P1	3e-11
PLN00138	113	PLN00138, PLN00138, large subunit ribosomal protei	1e-08
COG2058	109	COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP	2e-07
PTZ00373	112	PTZ00373, PTZ00373, 60S Acidic ribosomal protein P	2e-06
cd04411	105	cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P	3e-06
cd05797	157	cd05797, Ribosomal_L10, Ribosomal protein L10 fami	1e-04
PRK06402	106	PRK06402, rpl12p, 50S ribosomal protein L12P; Revi	0.001

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score =  402 bits (1034), Expect = e-141
 Identities = 165/316 (52%), Positives = 220/316 (69%), Gaps = 8/316 (2%)

Query: 4   KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
           K  K  KK AY  KL +LLE+Y +IL+ + DNVGS Q+Q+IRR LRG + +LMGKNT+++
Sbjct: 3   KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIR 62

Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPID 123
           + ++   E+        L+P ++GNVG +FTK DL EVK  + + KV APAR G++APID
Sbjct: 63  KALKQRLEELPELE--KLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPID 120

Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
           VV+P G TG+DPSQTSFFQ L I TKI KG +EI   V LI++G KVG+S+A LL KL I
Sbjct: 121 VVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKLNI 180

Query: 184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
           +PFSYGL V S+Y+NGS+Y  +VLD++++D+V KF   V  V A++LA  YPT A+APH 
Sbjct: 181 KPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHS 240

Query: 244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKE 303
            +NA+KN+ A+ L + ++FP A+K+KE LA+PS  A AAA       A AAAA      E
Sbjct: 241 ILNAFKNLAAIGLESGFTFPLAEKIKEALANPSAAAAAAAA-----AAAAAAAAAAAPAE 295

Query: 304 EPAEESDGDMGFSLFD 319
           E  EE + DMGF LFD
Sbjct: 296 EE-EEEEDDMGFGLFD 310

Length = 310

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score =  246 bits (631), Expect = 2e-82
 Identities = 94/177 (53%), Positives = 124/177 (70%), Gaps = 2/177 (1%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           E K  Y  KL +LL+ Y ++L+  ADNVGS QLQ IRR LRG + +LMGKNT+++R +R 
Sbjct: 1   EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRN 60

Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPP 128
             +   N     L+P L+GNVG IFT GD  E+++ + + KV APA+ G +AP DVVVP 
Sbjct: 61  LGD--ENPELEKLLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPA 118

Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRP 185
           G TG+ P  TSFFQ L IPTKI KG +EII+ V +++KG+KVG+SEA LL KL I+P
Sbjct: 119 GPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLNIKP 175

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score =  231 bits (590), Expect = 2e-74
 Identities = 128/322 (39%), Positives = 190/322 (59%), Gaps = 17/322 (5%)

Query: 6   SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRT 65
           S    K  Y+ +L   L +Y+ +L    DNV S Q+ ++RR LRG +  +MGK T+  + 
Sbjct: 3   SITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKI 62

Query: 66  IRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL 118
           +   A+    +A   L         LL GN GLIFT  +++E+   +  ++V APARVG 
Sbjct: 63  VEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGA 122

Query: 119 VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALL 178
           +AP DV+VP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL
Sbjct: 123 IAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLL 182

Query: 179 AKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASSVSMVTALALAISYPTL 237
            KL I PF Y + V SV++ G +++ E L ++ +D+VEK     +S V A++L    PT 
Sbjct: 183 QKLNISPFYYQVEVLSVWDRGVLFTREDLSMT-EDVVEKMLMEGLSNVAAMSLGAGIPTA 241

Query: 238 AAAPHMFVNAYKNVVAVALATEYSFPQAD--KVKEYLADPS---KFAVAAAPVAGGGDAP 292
           A    M V+A+KN++AV++AT Y F + +  +++E   +       + AA   A    A 
Sbjct: 242 ATIGPMLVDAFKNLLAVSVATSYEFEEHNGKELREAALEGLLGGGGSAAAEAAAAAPAAA 301

Query: 293 AAAAKEEEKKEEPAEESDGDMG 314
           +AAAKEE   EE ++E D  MG
Sbjct: 302 SAAAKEE---EEESDEDDFGMG 320

Length = 323

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score =  170 bits (434), Expect = 7e-51
 Identities = 102/317 (32%), Positives = 156/317 (49%), Gaps = 20/317 (6%)

Query: 8   AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIR 67
            E K     +L +L++ Y  + +   + + + QLQ IRR LRG + + + KNT++KR + 
Sbjct: 5   PEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRAL- 63

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVP 127
              E+ G      L   L+G V LIFT  +  ++ + + K K  APA+ G +AP D+VVP
Sbjct: 64  ---EEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVP 120

Query: 128 PGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPF 186
            G TG  P    S  Q L IP +I KG + I     + + G+ +    A +L KLGI+P 
Sbjct: 121 AGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQKLGIKPI 180

Query: 187 SYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVN 246
             GL +++ YE+G +Y+PEVL + E+        +      LA+  +YPT      +   
Sbjct: 181 EVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQK 240

Query: 247 AYKNVVAVALATEYSFPQADKVKEYL--ADPSKFAVAAA-----------PVAGGGDAPA 293
           A++   A ALA E      +   + L  A     A+AAA                  A A
Sbjct: 241 AFRE--AKALAVEAGIVTPETADDILSKAVAQALALAAALADKDALDEELKEVLSAQAQA 298

Query: 294 AAAKEEEKKEEPAEESD 310
           AAA+EEE++EE  EE +
Sbjct: 299 AAAEEEEEEEEEEEEEE 315

Length = 330

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score = 94.6 bits (236), Expect = 9e-24
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 15/162 (9%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIR 67
           EKK     +L +LL++Y  ++V     +   QL  +R+ LR     L +GKNT+M+R + 
Sbjct: 1   EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRAL- 59

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVG---APARVGLVAPIDV 124
                   T F  L PLL+G   L FT  D  EV + +  +        A+ G+VA   V
Sbjct: 60  ------KGTGFEELKPLLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKV 112

Query: 125 VVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRK 166
           + P G T L    +   +   +   I      I     L+  
Sbjct: 113 LDPAGVTALAKLPS---REELLAMLIGLLKAPIAKLARLLNA 151

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 91.5 bits (228), Expect = 2e-23
 Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 234 YPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPV---AGGGD 290
            PT A   H+   A K V A  L     F +   +KE +A+ S    AAA     A    
Sbjct: 1   EPTAADIKHVLKAAGKEVEAERLELLVKFLEGKNIKELIANGSAKLSAAAAAAAAAAAAA 60

Query: 291 APAAAAKEEEKKEEPAEESDGDMGFSLF 318
           A AAAA+EE+K+EE  EE D DMGF LF
Sbjct: 61  AAAAAAEEEKKEEEEEEEEDDDMGFGLF 88

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 84.9 bits (211), Expect = 9e-21
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 7   KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRT 65
             EKK    A+L +LL+EY  ++V     +   QL  +R+ LR   + + +GKNT+M+R 
Sbjct: 2   TREKKEEIVAELKELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELKVGKNTLMRRA 61

Query: 66  IRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKY 108
           +    E+        L  LL+G   LIFT  D   V + + K+
Sbjct: 62  LEGTGEEEA------LSELLKGPTALIFTNEDPVAVAKVLKKF 98

Length = 100

>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIR 67
           E K    A+L +L++E   +++     +   QL  +R+ LR     L + KNT+++R + 
Sbjct: 6   EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALE 65

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVP 127
                        L  LL+G   + F+  D     + +  +   A       API   VP
Sbjct: 66  -------EAGLEGLDDLLKGPTAIAFSNEDPVAAAKLLKDFAKEAGD----KAPIKGGVP 114

Query: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFS 187
            G             VL     I    +     + ++  G     +   LL  L   P  
Sbjct: 115 EGK------------VLGAAEVIALAKLPSKEELVVMLLGVLQAPA-TKLLRALKAVPDK 161

Query: 188 YGLVVQSVYENGSV 201
            GL + + YE G V
Sbjct: 162 VGLKLLAAYEKGVV 175

Length = 175

>gnl|CDD|240222 cd05796, Ribosomal_P0_like, Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

 Score = 79.9 bits (198), Expect = 4e-18
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           E K      + + +++Y  I V + DN+ +N+L++IR+  + DS    GKN +M+  +  
Sbjct: 1   ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK-DSRFFFGKNKVMQVALGR 59

Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPP 128
             E         L   L+G VGL+FT    +EV E    Y     AR G +A   V +P 
Sbjct: 60  TPEDEYKPNLHKLSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPE 119

Query: 129 GNTGLDP---SQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKV 170
           G   L+    S     + L +PTK+ KG + +     +  +G  +
Sbjct: 120 GP--LEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKVL 162

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 163

>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 32/51 (62%), Positives = 33/51 (64%)

Query: 269 KEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319
           KE LA     A  AAP A    A AAAAK+EEKKEE  EESD DMGF LFD
Sbjct: 59  KEKLASVPAGAGGAAPAAAAAAAAAAAAKKEEKKEESEEESDDDMGFGLFD 109

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A heterodimers. Some plants have a third P-protein, called P3, which is not homologous to P1 and P2. In humans, P1 and P2 are strongly autoimmunogenic. They play a significant role in the etiology and pathogenesis of systemic lupus erythema (SLE). In addition, the ribosome-inactivating protein trichosanthin (TCS) interacts with human P0, P1, and P2, with its primary binding site in the C-terminal region of P2. TCS inactivates the ribosome by depurinating a specific adenine in the sarcin-ricin loop of 28S rRNA. Length = 109

>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 267 KVKEYLADPSKFAVAAAPVAG--GGDAPAAAAKEEEKKEEPAEESDGDMGFSLF 318
            +K+ L++       AAP A      A AA AK+EEKKEE  EESD DMGF LF
Sbjct: 50  DIKDLLSNVGGGGGGAAPAAAAAAAAAAAAEAKKEEKKEEEEEESDDDMGFGLF 103

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A heterodimers. Some plant species have a third P-protein, called P3, which is not homologous to P1 and P2. In humans, P1 and P2 are strongly autoimmunogenic. They play a significant role in the etiology and pathogenesis of systemic lupus erythema (SLE). In addition, the ribosome-inactivating protein trichosanthin (TCS) interacts with human P0, P1, and P2, with its primary binding site located in the C-terminal region of P2. TCS inactivates the ribosome by depurinating a specific adenine in the sarcin-ricin loop of 28S rRNA. Length = 103

>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2; Provisional

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 31/41 (75%), Positives = 32/41 (78%), Gaps = 1/41 (2%)

Query: 279 AVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319
           A AAAP AGG  APAA AK+EEK EE  EESD DMGFSLFD
Sbjct: 74  AAAAAPAAGGAAAPAAEAKKEEKVEE-KEESDDDMGFSLFD 113

Length = 113

>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 26/47 (55%)

Query: 273 ADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319
           A  +  A AAA       A A  A+EEEK+EE  EESD DM F LF 
Sbjct: 63  AAAAAGAAAAAAAGAEAAAEADEAEEEEKEEEAEEESDDDMLFGLFG 109

Length = 109

>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 27/42 (64%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 279 AVAAAPVAGGGDAPA-AAAKEEEKKEEPAEESDGDMGFSLFD 319
           A AAAP AG   A A A AK+EEKKEE  EE D D+GFSLF 
Sbjct: 72  AAAAAPAAGAATAGAKAEAKKEEKKEEEEEEED-DLGFSLFG 112

Length = 112

>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 267 KVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLF 318
           K KE ++  +  A AAAP A        A K EE KEE  EE D D GF LF
Sbjct: 56  KGKELMSSQA--AAAAAPAATAAATAEPAEKAEEAKEEEEEEEDEDFGFGLF 105

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have two copies each of P1 and P2 (two heterodimers). Bacteria may have four or six copies (two or three homodimers), depending on the species. As in bacteria, the stalk is crucial for binding of initiation, elongation, and release factors in eukaryotes and archaea. Length = 105

>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)

Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLM-GKNTMMKRTIR 67
           EKK    A+L + L+E   ++VA    +   QL  +R+ LR   V L   KNT+ KR + 
Sbjct: 3   EKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALE 62

Query: 68  MHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYK 109
                   T F +L  LL+G   + F++ D     + +  + 
Sbjct: 63  -------GTGFEDLDDLLKGPTAIAFSEEDPVAAAKVLKDFA 97

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs. Length = 157

>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 279 AVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSL 317
           A AAA  A    A A   KEEE++EE  EES+ +    L
Sbjct: 63  AAAAAAAAAAAAAAAEEKKEEEEEEEEKEESEEEAAAGL 101

Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	319
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	100.0
PTZ00240	323	60S ribosomal protein P0; Provisional	100.0
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	100.0
KOG0815	245	consensus 60S acidic ribosomal protein P0 [Transla	100.0
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	100.0
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	100.0
KOG0816	223	consensus Protein involved in mRNA turnover [RNA p	100.0
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	99.97
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.89
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.88
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	99.85
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	99.84
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	99.84
KOG1762	114	consensus 60s acidic ribosomal protein P1 [Transla	99.67
cd05833	109	Ribosomal_P2 Ribosomal protein P2. This subfamily	99.58
PTZ00373	112	60S Acidic ribosomal protein P2; Provisional	99.55
cd05831	103	Ribosomal_P1 Ribosomal protein P1. This subfamily	99.5
cd04411	105	Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and	99.48
PF00428	88	Ribosomal_60s: 60s Acidic ribosomal protein; Inter	99.48
PLN00138	113	large subunit ribosomal protein LP2; Provisional	99.46
PTZ00240	323	60S ribosomal protein P0; Provisional	99.33
KOG3449	112	consensus 60S acidic ribosomal protein P2 [Transla	99.23
COG2058	109	RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr	99.09
PRK06402	106	rpl12p 50S ribosomal protein L12P; Reviewed	98.77
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	98.75
TIGR03685	105	L21P_arch 50S ribosomal protein L12P. This model r	98.06
cd05832	106	Ribosomal_L12p Ribosomal protein L12p. This subfam	98.06
KOG4241	245	consensus Mitochondrial ribosomal protein L10 [Tra	96.8
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	93.25
PF00428	88	Ribosomal_60s: 60s Acidic ribosomal protein; Inter	92.94
COG2058	109	RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr	81.29

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=100.00  E-value=7.1e-94  Score=678.39  Aligned_cols=310  Identities=52%  Similarity=0.844  Sum_probs=289.2

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccc
Q 020952            1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN   80 (319)
Q Consensus         1 m~~~~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~   80 (319)
                      |+ ++.+|+||++++++|+++|++|++++|++|+|++++|+|+||+.||++++|+||||||||+||+++.++  .++++.
T Consensus         1 ~~-~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~--~~~l~~   77 (310)
T PTZ00135          1 MA-KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEE--LPELEK   77 (310)
T ss_pred             CC-cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCccc--ccChHH
Confidence            56 788999999999999999999999999999999999999999999988999999999999999998654  335999


Q ss_pred             cccccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecC
Q 020952           81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (319)
Q Consensus        81 L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d  160 (319)
                      |.++|+||+||+|||+||.+++++|.+|++++|||+|.|||+||+||+|||+|+|++++|||+|||||+|++|+|+|.+|
T Consensus        78 L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~LgipTkI~kG~I~I~~d  157 (310)
T PTZ00135         78 LLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNE  157 (310)
T ss_pred             HHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCceEecCCeEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcCh
Q 020952          161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA  240 (319)
Q Consensus       161 ~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~  240 (319)
                      ++||++||+||++||+||++|||+||+|+++++++||+|.+|++++|+||+|+|.++|++|++++++||+++||||+++|
T Consensus       158 ~~v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~  237 (310)
T PTZ00135        158 VHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASA  237 (310)
T ss_pred             eEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccCCCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       241 p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      ||+|+|+|+++++|+++++|+||+.++++++++||+++++|  |++++++++ +  +++ +++||+|||||||||||||
T Consensus       238 p~~ia~a~k~~~a~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~-~--~~~-~~~~~~ee~~~~~g~~lf~  310 (310)
T PTZ00135        238 PHSILNAFKNLAAIGLESGFTFPLAEKIKEALANPSAAAAA--AAAAAAAAA-A--AAA-APAEEEEEEEDDMGFGLFD  310 (310)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCChhhHHHHHhhcCchhhccC--ccccCcccc-c--ccc-cccccccCcchhccccCCC
Confidence            99999999999999999999999999999999999999863  332221111 1  222 2246677889999999998

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=100.00  E-value=4.4e-92  Score=665.44  Aligned_cols=309  Identities=40%  Similarity=0.620  Sum_probs=283.1

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCcccccc-----
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNL-----   81 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L-----   81 (319)
                      .++||.+++++|++++++|++|+||+++|++++|||+||+.||++++|+||||||||+||+++.++++.+++++|     
T Consensus         4 ~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~   83 (323)
T PTZ00240          4 ITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQC   83 (323)
T ss_pred             hhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhc
Confidence            478999999999999999999999999999999999999999999999999999999999998776655556666     


Q ss_pred             --ccccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEec
Q 020952           82 --IPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT  159 (319)
Q Consensus        82 --~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~  159 (319)
                        .++|+||+||+|||+||++|+++|.+|++++|||+|+|||+||+||+|||+|+|++++|||+|||||+|++|+|+|.+
T Consensus        84 ~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI~kGkIeI~~  163 (323)
T PTZ00240         84 EEKNLLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVT  163 (323)
T ss_pred             cccccccCCEEEEEeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCcchHHHHHcCCCeEecCcEEEEec
Confidence              499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Q 020952          160 PVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAA  239 (319)
Q Consensus       160 d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~  239 (319)
                      |++||++||+||++||+||++|||+|++|+++++++|++|.+|++++|+||+|+|.++|++|++++++||+++||||+++
T Consensus       164 d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~s  243 (323)
T PTZ00240        164 EKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAAT  243 (323)
T ss_pred             CeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccc---cccccCCCCCcchhhhhhhhccCCcccccCCCCCC
Q 020952          240 APHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVA---AAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFS  316 (319)
Q Consensus       240 ~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a---~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfg  316 (319)
                      +||+|.|||+++++|+++++|+||+..+++..+++|+++++.   ++|+|+++  ++++++ +++++||+||+|||||||
T Consensus       244 i~~~i~~a~~~~~alav~~~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~a~~~--~~~~~~-~~~~~~~~e~~~~d~~~~  320 (323)
T PTZ00240        244 IGPMLVDAFKNLLAVSVATSYEFEEHNGKELREAALEGLLGGGGSAAAEAAAA--APAAAS-AAAKEEEEESDEDDFGMG  320 (323)
T ss_pred             HHHHHHHHHHHHHHHhhhcCcCChhhHHHHHhhhCHHhhhccccccccccccc--cccccc-cccccCCccCcccccCcc
Confidence            999999999999999999999999999999999999988742   11222111  111112 223356677888999997


Q ss_pred             -CC
Q 020952          317 -LF  318 (319)
Q Consensus       317 -lF  318 (319)
                       ||
T Consensus       321 ~~~  323 (323)
T PTZ00240        321 ALF  323 (323)
T ss_pred             ccC
Confidence             65

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=100.00  E-value=3.8e-72  Score=536.43  Aligned_cols=263  Identities=31%  Similarity=0.508  Sum_probs=251.6

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCcccccccccc
Q 020952            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (319)
Q Consensus         6 ~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l   85 (319)
                      .-++||.++|++|+++|++|++++|++|+|++++|+|+||+.||+.++|+|+|||||++||+++.+    +++++|.++|
T Consensus         3 ~~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~----~~~~~L~~~l   78 (330)
T PRK04019          3 HVPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE----EDLEKLEDYL   78 (330)
T ss_pred             chHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc----ccHHHHHhhc
Confidence            348999999999999999999999999999999999999999998899999999999999998743    3489999999


Q ss_pred             CCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcch-hhhhhcCcceEEecceEEEecCeeEe
Q 020952           86 QGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELI  164 (319)
Q Consensus        86 ~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~-~~fq~LgIptki~~G~I~i~~d~~v~  164 (319)
                      +|++||+|||+||++++++|.+|++++|||+|+|||+|||||+|||+++|+++ ++||+|||||+|++|+|+|.+|++||
T Consensus        79 ~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~  158 (330)
T PRK04019         79 EGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVA  158 (330)
T ss_pred             cCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEe
Confidence            99999999999999999999999999999999999999999999999999985 99999999999999999999999999


Q ss_pred             ecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHH
Q 020952          165 RKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMF  244 (319)
Q Consensus       165 ~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i  244 (319)
                      ++|++|+++||++|++|||+|++|++++.++|++|.+|++++|+||++++..+|..|++++.+||++++|||++++|++|
T Consensus       159 ~~G~~v~~~~a~lL~~LgI~p~~~~~~i~a~~~~G~~~~~~~l~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i  238 (330)
T PRK04019        159 KAGEVISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLI  238 (330)
T ss_pred             cCCCCcCHHHHHHHHHcCCCHHHhhhHHHHHHhcCCccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCcccHHHHhcC
Q 020952          245 VNAYKNVVAVALATEYSFPQADKVKEYLAD  274 (319)
Q Consensus       245 ~~a~~~~~al~~~~~~~~~~~~~i~~~l~~  274 (319)
                      ++||+++++|+++++|.+++  .++.+|..
T Consensus       239 ~kA~~~a~aLa~~~~~~t~e--~~~~il~k  266 (330)
T PRK04019        239 QKAFREAKALAVEAGIVTPE--TADDILSK  266 (330)
T ss_pred             HHHHHHHHHHHHHcCCCChh--hHHHHHHH
Confidence            99999999999999996554  55655544

>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.7e-69  Score=472.59  Aligned_cols=245  Identities=64%  Similarity=1.014  Sum_probs=240.1

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccc
Q 020952            1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN   80 (319)
Q Consensus         1 m~~~~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~   80 (319)
                      |+ +...++||..++.++++++++|+.++++..+|+.+.|||+||+.||+.+++.||||||||+|++.+.++++.  ++.
T Consensus         1 m~-~~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~--~~~   77 (245)
T KOG0815|consen    1 MV-RADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPA--LEK   77 (245)
T ss_pred             Cc-chhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHH--HHh
Confidence            66 788899999999999999999999999999999999999999999999999999999999999999877666  999


Q ss_pred             cccccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecC
Q 020952           81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (319)
Q Consensus        81 L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d  160 (319)
                      +.++++||+||+||++|..++.+.+.++++.++||+|.|||+||+||+++||+.|+++||||+|||||||.||+|||.+|
T Consensus        78 llp~~~g~vgfvftk~~L~ei~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P~ktsfFQaLgIpTKIsrGtiEIlsd  157 (245)
T KOG0815|consen   78 LLPVVKGNVGFVFTKGDLKEIRKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGPEKTSFFQALGIPTKISRGTIEILSD  157 (245)
T ss_pred             hccceeeceeEEEEeccHHHHHHHHHhcccccccccCCcCCceEEeccccCCCCcchhhhhhhcCCceeeecceEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcCh
Q 020952          161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA  240 (319)
Q Consensus       161 ~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~  240 (319)
                      +.++++||||++|||.||.||||+||.|||.++++||||.+|+||+||||+|++.+.|.+|+++++++|+++||||-+++
T Consensus       158 V~lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~~vs~va~~sL~~~ypt~asv  237 (245)
T KOG0815|consen  158 VQLIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLSGVSNVASVSLAAGYPTLASV  237 (245)
T ss_pred             ceeeccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHH
Q 020952          241 PHMFVNAY  248 (319)
Q Consensus       241 p~~i~~a~  248 (319)
                      ||.|.|+|
T Consensus       238 ~h~~~n~~  245 (245)
T KOG0815|consen  238 PHSFINAY  245 (245)
T ss_pred             chhhhhcC
Confidence            99999875

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=100.00  E-value=1.1e-56  Score=394.40  Aligned_cols=175  Identities=54%  Similarity=0.875  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccccCCc
Q 020952            9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGN   88 (319)
Q Consensus         9 e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~G~   88 (319)
                      +||.++|++|++++++|++++|++|+|++++|+++||+.||++++|+|+|||||++||+++.+  ..++++.|.++|+|+
T Consensus         1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~--~~~~~~~L~~~l~G~   78 (175)
T cd05795           1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGD--ENPELEKLLPYLKGN   78 (175)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhccc--ccccHHHHHHHhcCC
Confidence            589999999999999999999999999999999999999998899999999999999999853  334599999999999


Q ss_pred             eEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCc
Q 020952           89 VGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGD  168 (319)
Q Consensus        89 ~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~  168 (319)
                      +||+|||+||++++++|.+|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|++||++||
T Consensus        79 ~~liFt~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~  158 (175)
T cd05795          79 VGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGE  158 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcCCCCCchHHHHHcCCceEEecCEEEEecCeEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhHHHHHHHhCCCc
Q 020952          169 KVGSSEAALLAKLGIRP  185 (319)
Q Consensus       169 ~v~~~~A~lL~~l~i~p  185 (319)
                      +||++||+||++|||+|
T Consensus       159 ~v~~~~A~lL~~l~i~P  175 (175)
T cd05795         159 KVGASEATLLNKLNIKP  175 (175)
T ss_pred             CcCHHHHHHHHHcCCCC
Confidence            99999999999999998

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=100.00  E-value=1e-50  Score=352.78  Aligned_cols=162  Identities=27%  Similarity=0.405  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccccCCc
Q 020952            9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGN   88 (319)
Q Consensus         9 e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~G~   88 (319)
                      +||.+++++|+++|++|++++|++|+|++++|+++||+.||+. +|+|+|||||++||+++.+++..++++.|.++|+|+
T Consensus         1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~   79 (163)
T cd05796           1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ   79 (163)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence            5899999999999999999999999999999999999999986 999999999999999987666667799999999999


Q ss_pred             eEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcc-hhhhhhcCcceEEecceEEEecCeeEeecC
Q 020952           89 VGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKG  167 (319)
Q Consensus        89 ~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~v~~~G  167 (319)
                      +||+|||+||++++++|.+|++++|||+|+|||+||+||+|+|++.|++ .++||+|||||+|++|+|+|.+|++||++|
T Consensus        80 ~~lift~~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G  159 (163)
T cd05796          80 VGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEG  159 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCC
Confidence            9999999999999999999999999999999999999999999987765 699999999999999999999999999999


Q ss_pred             cccC
Q 020952          168 DKVG  171 (319)
Q Consensus       168 ~~v~  171 (319)
                      |+||
T Consensus       160 ~~v~  163 (163)
T cd05796         160 KVLT  163 (163)
T ss_pred             CCCc
Confidence            9986

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]

Probab=100.00  E-value=4.1e-49  Score=342.53  Aligned_cols=196  Identities=28%  Similarity=0.431  Sum_probs=190.5

Q ss_pred             ccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCcccccccc
Q 020952            4 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP   83 (319)
Q Consensus         4 ~~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~   83 (319)
                      .||.+++|+.+|++|++++++|+++||+++.|||+..+++||.+|+ +++|+||||++|.+||++..++++.+++++++.
T Consensus        16 ~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~klsk   94 (223)
T KOG0816|consen   16 AKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKLSK   94 (223)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHhhh
Confidence            4678999999999999999999999999999999999999999999 799999999999999999999999999999999


Q ss_pred             ccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCC-CCCCcchhhhhhcCcceEEecceEEEecCee
Q 020952           84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNT-GLDPSQTSFFQVLNIPTKINKGTVEIITPVE  162 (319)
Q Consensus        84 ~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t-~~~p~~~~~fq~LgIptki~~G~I~i~~d~~  162 (319)
                      .|+|.+||+|||.++.++..+|.+|...+|||+|++||.+|+||+||. .+.|++.+.+|+|||||++.+|+|++.+|++
T Consensus        95 ll~G~~GLlFTd~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt~lk~G~vtL~sdy~  174 (223)
T KOG0816|consen   95 LLKGSVGLLFTDMSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPTKLKKGVVTLLSDYT  174 (223)
T ss_pred             hccCceEEEecCCCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCceeecCCeEEEecCce
Confidence            999999999999999999999999999999999999999999999997 5789999999999999999999999999999


Q ss_pred             EeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCc
Q 020952          163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGS  200 (319)
Q Consensus       163 v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~  200 (319)
                      ||++|++++++||+||++||+++.+|++.+.++|+...
T Consensus       175 VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~  212 (223)
T KOG0816|consen  175 VCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSS  212 (223)
T ss_pred             eecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCcc
Confidence            99999999999999999999999999999999999643

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=5.5e-32  Score=237.49  Aligned_cols=171  Identities=25%  Similarity=0.320  Sum_probs=163.4

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCccccccccc
Q 020952            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL   84 (319)
Q Consensus         6 ~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~   84 (319)
                      ..++||.++|++++++|++|++++|+||+|+++.|+++||++||+ +++++|+||||+++|++++.       .+.|.++
T Consensus         3 ~~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~-------~e~l~~~   75 (175)
T COG0244           3 LAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAG-------LEGLDDL   75 (175)
T ss_pred             ccHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcc-------hhhHHHh
Confidence            357999999999999999999999999999999999999999997 59999999999999999884       6779999


Q ss_pred             cCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEe
Q 020952           85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI  164 (319)
Q Consensus        85 l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~  164 (319)
                      |+|+++++||++||++++|+|.+|..+.    |++++.++++++|.            .|++|+.+..|+|.+.+|..+.
T Consensus        76 l~Gp~ai~fs~~dp~~~~K~~~~f~k~~----~~~~~~~~~~~eg~------------~l~~~~v~~~aklp~~~el~~~  139 (175)
T COG0244          76 LKGPTAIAFSNEDPVAAAKLLKDFAKEA----GDKAPIKGGVPEGK------------VLGAAEVIALAKLPSKEELVVM  139 (175)
T ss_pred             ccCCeEEEEecCCHHHHHHHHHHHhhhh----cccceEEEEEecCc------------ccCHHHHHHHhcCCcHHHHHHH
Confidence            9999999999999999999999998776    99999999999998            5799999999999999999999


Q ss_pred             ecCcccChhHHHHHHHhCCCcccccceeeeEeeCCc
Q 020952          165 RKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGS  200 (319)
Q Consensus       165 ~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~  200 (319)
                      ..|..+.|.. .++..|++.|.++++.+.++|++|.
T Consensus       140 l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g~  174 (175)
T COG0244         140 LLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKGV  174 (175)
T ss_pred             HHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccCC
Confidence            9999999999 9999999999999999999999885

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.89  E-value=1.9e-24  Score=185.53  Aligned_cols=122  Identities=33%  Similarity=0.472  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHHhchhhcCCccccccccccCC
Q 020952            9 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG   87 (319)
Q Consensus         9 e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~-~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~G   87 (319)
                      ++|.+++++++++|++|+.+++++|+|++++++++||+.||+. ++++|+|||||++||+++.       ++.+.++|+|
T Consensus         1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~-------~~~~~~~l~G   73 (155)
T cd00379           1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTG-------FEELKPLLKG   73 (155)
T ss_pred             CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCC-------ccchhhhCcC
Confidence            4799999999999999999999999999999999999999975 8999999999999999874       7888899999


Q ss_pred             ceEEEEecCChHHHHHHHHhhccC---ccccCCCccCceEEeCCCCCCCCCcch
Q 020952           88 NVGLIFTKGDLKEVKEEVAKYKVG---APARVGLVAPIDVVVPPGNTGLDPSQT  138 (319)
Q Consensus        88 ~~gliFT~~dp~~v~k~l~~~k~~---~~ar~G~iA~~dVvi~~G~t~~~p~~~  138 (319)
                      +++++||++||.++.++|.+|+..   .++|+|.++ .+|+.|.+.+.+++.|.
T Consensus        74 ~~~~~f~~~~~~~~~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp~  126 (155)
T cd00379          74 PTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLPS  126 (155)
T ss_pred             CEEEEEeCCChHHHHHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCCC
Confidence            999999999999999999999888   899999999 99999999988877763

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.88  E-value=3.3e-22  Score=159.88  Aligned_cols=96  Identities=32%  Similarity=0.485  Sum_probs=90.9

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHHhchhhcCCcccc-ccccc
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFL-NLIPL   84 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~-~~~~v~KNtl~r~Al~~~~~~~~~~~~~-~L~~~   84 (319)
                      +|++|.+++++++++|++|+.+++++|+|+++.|+++||+.||+. ++++|+|||||++||+++.       .+ .|.++
T Consensus         2 ~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~-------~~~~l~~~   74 (100)
T PF00466_consen    2 TKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTG-------FEEALSPL   74 (100)
T ss_dssp             SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHH-------TSSSSSCC
T ss_pred             cHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCc-------cccCcccc
Confidence            489999999999999999999999999999999999999999974 9999999999999999985       44 68999


Q ss_pred             cCCceEEEEecCChHHHHHHHHhhc
Q 020952           85 LQGNVGLIFTKGDLKEVKEEVAKYK  109 (319)
Q Consensus        85 l~G~~gliFT~~dp~~v~k~l~~~k  109 (319)
                      |+|+++++||++||.+++++|.+|.
T Consensus        75 l~G~~~~if~~~d~~~~~k~l~~~~   99 (100)
T PF00466_consen   75 LKGPTALIFSNEDPFEIAKILKKFA   99 (100)
T ss_dssp             TSSSEEEEEESSSHHHHHHHHHHST
T ss_pred             ccCCEEEEEECCCHHHHHHHHHHhc
Confidence            9999999999999999999999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=99.85  E-value=1.7e-21  Score=187.04  Aligned_cols=242  Identities=16%  Similarity=0.145  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHHhccCeEEEEEe-------CCCCcHHHHHHHHHccCCcEEEEEehH--HHHHHHHhchhhcCC-cc----
Q 020952           12 IAYDAKLCQLLEEYTQILVAAA-------DNVGSNQLQNIRRGLRGDSVVLMGKNT--MMKRTIRMHAEKTGN-TA----   77 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~~-------~~v~~~ql~~iR~~Lr~~~~~~v~KNt--l~r~Al~~~~~~~~~-~~----   77 (319)
                      ...+.+||..|.....++++.-       .+.....+.+|-..|+|..-+.+.+..  -+.+.+.......+. .|    
T Consensus        35 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~  114 (330)
T PRK04019         35 ARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAP  114 (330)
T ss_pred             HHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCC
Confidence            3567888998887645555422       122113377888899988777776543  344555554332221 11    


Q ss_pred             ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceE
Q 020952           78 FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTV  155 (319)
Q Consensus        78 ~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I  155 (319)
                      .+-..+  .|+     |+.+|+.+...|.+.+.+++++.|.  |+++++++++|+| ++|++.+.||+|||++...+++|
T Consensus       115 ~divip--~G~-----t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~-v~~~~a~lL~~LgI~p~~~~~~i  186 (330)
T PRK04019        115 EDIVVP--AGP-----TGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEV-ISPELANVLQKLGIKPIEVGLDL  186 (330)
T ss_pred             CeEEEc--CCC-----CCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCHHHhhhHH
Confidence            111122  455     7889999999999999999999999  9999999999999 99999999999999999999999


Q ss_pred             EEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCC
Q 020952          156 EIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYP  235 (319)
Q Consensus       156 ~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~p  235 (319)
                           ..++..|..++++.+      +|.|..|...+..+|.++..++.+...+|++.+...+.+|++++.+|+.+++||
T Consensus       187 -----~a~~~~G~~~~~~~l------~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~~  255 (330)
T PRK04019        187 -----KAAYEDGVIYTPEVL------AIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGIV  255 (330)
T ss_pred             -----HHHHhcCCccCHHHc------cCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                 788888999999876      799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCC
Q 020952          236 TLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPS  276 (319)
Q Consensus       236 t~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~  276 (319)
                      |+++++++|.+|+.++++|+.+++=.    ..+.+-|.+..
T Consensus       256 t~e~~~~il~kA~~~~~ala~~~~~~----~~~~~~~~~~~  292 (330)
T PRK04019        256 TPETADDILSKAVAQALALAAALADK----DALDEELKEVL  292 (330)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHhcCc----ccccHHHHhhc
Confidence            99999999999999999999987632    34444444433

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=99.84  E-value=8.6e-21  Score=166.32  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCcccccccccc
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l   85 (319)
                      +|++|.++++++++++++|+.+++++|+|++++|+++||+.||+ +++|+|+|||||++|++++.       ++.|.++|
T Consensus         2 ~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~-------~~~l~~~l   74 (172)
T PRK00099          2 NREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTG-------FEGLDDLL   74 (172)
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhhhhC
Confidence            38999999999999999999999999999999999999999997 58999999999999999873       89999999


Q ss_pred             CCceEEEEecCChHHHHHHHHhhcc
Q 020952           86 QGNVGLIFTKGDLKEVKEEVAKYKV  110 (319)
Q Consensus        86 ~G~~gliFT~~dp~~v~k~l~~~k~  110 (319)
                      +|+++++||++||.++++++.+|..
T Consensus        75 ~G~~al~fs~~d~~~~~k~l~~f~K   99 (172)
T PRK00099         75 KGPTAIAFSYEDPVAAAKVLKDFAK   99 (172)
T ss_pred             cCCeEEEEeCCChHHHHHHHHHHHh
Confidence            9999999999999999999998864

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=99.84  E-value=1.3e-20  Score=162.71  Aligned_cols=97  Identities=27%  Similarity=0.346  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCcccccccccc
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l   85 (319)
                      .|++|.++++++++++++|+.+++++|+|++++|+++||+.||+ +++|+|+||||+++|++++.       ++.|.++|
T Consensus         1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~-------~~~l~~~l   73 (157)
T cd05797           1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTG-------FEDLDDLL   73 (157)
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCC-------chhhHhhC
Confidence            47999999999999999999999999999999999999999997 48999999999999999874       78999999


Q ss_pred             CCceEEEEecCChHHHHHHHHhhcc
Q 020952           86 QGNVGLIFTKGDLKEVKEEVAKYKV  110 (319)
Q Consensus        86 ~G~~gliFT~~dp~~v~k~l~~~k~  110 (319)
                      +|+++++||++||.+++++|.+|..
T Consensus        74 ~G~~al~f~~~d~~~~~k~l~~f~k   98 (157)
T cd05797          74 KGPTAIAFSEEDPVAAAKVLKDFAK   98 (157)
T ss_pred             cCCEEEEEeCCChHHHHHHHHHHHH
Confidence            9999999999999999999999865

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=4.9e-17  Score=130.36  Aligned_cols=95  Identities=35%  Similarity=0.499  Sum_probs=69.8

Q ss_pred             CcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCc
Q 020952          199 GSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF  278 (319)
Q Consensus       199 g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~  278 (319)
                      +.++--+.+.+|.+.+.           .|.+++|..++.+||.+|++++.++               +++++|+|.+++
T Consensus        13 alIL~d~~i~it~dki~-----------tl~kaa~v~ve~~Wp~lfakale~v---------------ni~~li~n~gag   66 (114)
T KOG1762|consen   13 ALILHDDEIEVTADKIN-----------TLTKAAGVNVEPYWPGLFAKALEGV---------------NIKELICNVGAG   66 (114)
T ss_pred             hhhccccceeeehhhhh-----------hHHHhccCcccccchhHHHHHhccC---------------ChHHHHHhcccC
Confidence            34455555567777765           8999999999999999999999996               999999999875


Q ss_pred             cccccc-c-c--C---CCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          279 AVAAAP-V-A--G---GGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       279 ~~a~~~-a-~--~---~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      ++++++ + +  +   ++++++++++++++|+|++|||||||||||||
T Consensus        67 ~~a~a~~~~~~~~aa~~~~aA~~~Ekk~eak~EeseesddDmgfGLfd  114 (114)
T KOG1762|consen   67 GGALAAGAAAAGGAAAAGGAAAAEEKKEEAKKEESEESDDDMGFGLFD  114 (114)
T ss_pred             CccCCCccccccccccccccccchHHHHHhhhhhhcccccccccCCCC
Confidence            544311 1 1  1   11123334455566678889999999999998

>cd05833 Ribosomal_P2 Ribosomal protein P2

Probab=99.58  E-value=1.8e-15  Score=122.69  Aligned_cols=86  Identities=38%  Similarity=0.467  Sum_probs=58.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCc-------cc
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-------AV  280 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~-------~~  280 (319)
                      .||.++|.           ++..++|+.+++.||.+|.+++++               .+|.++|++....       ++
T Consensus        17 ~pTa~dI~-----------~IL~AaGveVe~~~~~lf~~~L~G---------------Kdi~eLIa~g~~kl~s~~~~~~   70 (109)
T cd05833          17 SPSAADVK-----------KILGSVGVEVDDEKLNKVISELEG---------------KDVEELIAAGKEKLASVPAGAG   70 (109)
T ss_pred             CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHcC---------------CCHHHHHHHhHhhhcCCCcccc
Confidence            56677765           899999999999999999999998               5999999974431       11


Q ss_pred             ccccccCCCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          281 AAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       281 a~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      +++|+++++++++++++++++|+|++|||||||||||||
T Consensus        71 ~aa~a~~~~a~aa~~~~~e~kkee~eee~ddDmGf~LFd  109 (109)
T cd05833          71 GAAPAAAAAAAAAAAAKKEEKKEESEEESDDDMGFGLFD  109 (109)
T ss_pred             ccccccccccccccchhhhhhccCCccccccccCCCCCC
Confidence            111222222222222234455556666679999999998

This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2

>PTZ00373 60S Acidic ribosomal protein P2; Provisional

Probab=99.55  E-value=7.2e-15  Score=119.28  Aligned_cols=86  Identities=28%  Similarity=0.387  Sum_probs=56.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcC-------CCCccc
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAD-------PSKFAV  280 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~-------~~a~~~  280 (319)
                      .||.++|.           .|..++|+.+++.|+.+|.+.++.               .+|.++|+.       .+..++
T Consensus        19 ~pTaddI~-----------kIL~AaGveVd~~~~~l~~~~L~G---------------KdI~ELIa~G~~kl~svgg~~~   72 (112)
T PTZ00373         19 NPTKKEVK-----------NVLSAVNADVEDDVLDNFFKSLEG---------------KTPHELIAAGMKKLQNIGGGVA   72 (112)
T ss_pred             CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHcC---------------CCHHHHHHHhHHHHhcccCccc
Confidence            36666665           899999999999999999999998               599999973       322211


Q ss_pred             c-cccccCCCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          281 A-AAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       281 a-~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      + ++++++++++++++++++++|+||+|||||||||||||
T Consensus        73 aa~a~a~~~~~~~~~~~~~~e~k~ee~ee~ddDmgf~LFd  112 (112)
T PTZ00373         73 AAAAPAAGAATAGAKAEAKKEEKKEEEEEEEDDLGFSLFG  112 (112)
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccccccC
Confidence            1 11111111112222223333456667889999999998

>cd05831 Ribosomal_P1 Ribosomal protein P1

Probab=99.50  E-value=2.8e-14  Score=114.88  Aligned_cols=91  Identities=37%  Similarity=0.505  Sum_probs=64.9

Q ss_pred             cCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccc
Q 020952          202 YSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVA  281 (319)
Q Consensus       202 ~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a  281 (319)
                      +...-..||.+.|.           ++..++|+.+++.||.+|.+++.+               .+|.++|+++++.+++
T Consensus        11 L~d~~~~~Tae~I~-----------~ilkAaGveve~~~~~~f~~~L~g---------------k~i~elIa~~~~~~~~   64 (103)
T cd05831          11 LHDDGIEITADNIN-----------ALLKAAGVNVEPYWPGLFAKALEG---------------KDIKDLLSNVGGGGGG   64 (103)
T ss_pred             HccCCCCCCHHHHH-----------HHHHHcCCcccHHHHHHHHHHHcC---------------CCHHHHhhcccccccc
Confidence            33444578888877           889999999999999999999998               5999999998764443


Q ss_pred             cccccCCCCC-cc-hhhhhhhhccCCcccccCCCCCCCC
Q 020952          282 AAPVAGGGDA-PA-AAAKEEEKKEEPAEESDGDMGFSLF  318 (319)
Q Consensus       282 ~~~a~~~~~~-~~-~~~~~~~~k~e~~ee~d~dmgfglF  318 (319)
                      ++|+++++++ ++ ++++++++|+|++||+|||||||||
T Consensus        65 aap~a~~a~~~~~~~~~~~~~kk~e~eee~d~dmgfglF  103 (103)
T cd05831          65 AAPAAAAAAAAAAAAEAKKEEKKEEEEEESDDDMGFGLF  103 (103)
T ss_pred             ccccccccccccccccchhhhcccccccccccccccccC
Confidence            2233322111 11 1223355556677788999999999

This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and

>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p

Probab=99.48  E-value=2.9e-14  Score=115.07  Aligned_cols=85  Identities=34%  Similarity=0.495  Sum_probs=58.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCc----ccc-c
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF----AVA-A  282 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~----~~a-~  282 (319)
                      .||.++|.           ++...+|..+.+.|+.+|.+++.+.               +|.++|++..+-    +++ +
T Consensus        16 ~~ta~~I~-----------~IL~aaGveVe~~~~~~~~~aLaGk---------------~V~eli~~g~~kl~~~~~~~~   69 (105)
T cd04411          16 ELTEDKIK-----------ELLSAAGAEIEPERVKLFLSALNGK---------------NIDEVISKGKELMSSQAAAAA   69 (105)
T ss_pred             CCCHHHHH-----------HHHHHcCCCcCHHHHHHHHHHHcCC---------------CHHHHHHHHHhhccCCCCccc
Confidence            47888776           8999999999999999999999984               999999886531    111 1


Q ss_pred             ccccCCCCCcchhhhhhhhccCCcccccCCCCCCCC
Q 020952          283 APVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLF  318 (319)
Q Consensus       283 ~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglF  318 (319)
                      +++++++++++++++++++|+|++||||||||||||
T Consensus        70 a~~~a~~~~~~~~~~~~e~k~ee~eE~dddmgf~LF  105 (105)
T cd04411          70 APAATAAATAEPAEKAEEAKEEEEEEEDEDFGFGLF  105 (105)
T ss_pred             cccccccccccchhhhhhhhcccccccccccCcccC
Confidence            111111111222223444455667888999999999

Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain

>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.48  E-value=1.7e-15  Score=118.79  Aligned_cols=85  Identities=41%  Similarity=0.424  Sum_probs=57.7

Q ss_pred             CCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCccc--ccccccCCCCCcchhhhhhhhccCC-ccccc
Q 020952          234 YPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAV--AAAPVAGGGDAPAAAAKEEEKKEEP-AEESD  310 (319)
Q Consensus       234 ~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~--a~~~a~~~~~~~~~~~~~~~~k~e~-~ee~d  310 (319)
                      |||.+.++++|..++.++.+..+.+.+.+.+..+|+++|++++++.+  +++++++++++++++++++++|+++ +||+|
T Consensus         1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~~~~~~~aaa~aaa~aa~~~a~a~~e~kkEeeeeEEed   80 (88)
T PF00428_consen    1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGSAGMAAAAAAAAAAAAAAAAAAAAEEEKKEEEEEEEED   80 (88)
T ss_dssp             S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHSTTHHHHT--SS-S
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhcccccccccccccccccccccccccchhcccccccccccc
Confidence            68999999999999999999999999989999999999999997732  2212222111111122223333333 36889


Q ss_pred             CCCCCCCC
Q 020952          311 GDMGFSLF  318 (319)
Q Consensus       311 ~dmgfglF  318 (319)
                      +|||||||
T Consensus        81 ~dmGf~LF   88 (88)
T PF00428_consen   81 DDMGFGLF   88 (88)
T ss_dssp             SSSSTTTT
T ss_pred             cccCcCCC
Confidence            99999999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.

>PLN00138 large subunit ribosomal protein LP2; Provisional

Probab=99.46  E-value=9.1e-14  Score=113.36  Aligned_cols=86  Identities=30%  Similarity=0.359  Sum_probs=56.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcC-------CCCccc
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAD-------PSKFAV  280 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~-------~~a~~~  280 (319)
                      .||.++|.           .|..++|+.+++.|+.+|.++++.               .+|.++|++       .+++++
T Consensus        17 ~pta~dI~-----------~IL~AaGvevd~~~~~~f~~~L~g---------------K~i~eLIa~G~~kl~sv~~gg~   70 (113)
T PLN00138         17 CPSAEDLK-----------DILGSVGADADDDRIELLLSEVKG---------------KDITELIASGREKLASVPSGGG   70 (113)
T ss_pred             CCCHHHHH-----------HHHHHcCCcccHHHHHHHHHHHcC---------------CCHHHHHHhchhccccCCCCCc
Confidence            46777766           889999999999999999999998               599999964       444332


Q ss_pred             ccccccCC--C--CCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          281 AAAPVAGG--G--DAPAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       281 a~~~a~~~--~--~~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      ++++++++  +  ++++++++++++|+|++|||||||||||||
T Consensus        71 aa~a~a~a~~~~~~~~~~~~~~~e~k~e~eeE~ddDmGfgLFd  113 (113)
T PLN00138         71 VAVAAAAAPAAGGAAAPAAEAKKEEKVEEKEESDDDMGFSLFD  113 (113)
T ss_pred             cccccccccccccccccccchhhhhhccccccccccccccccC
Confidence            21111111  1  111111222333345667889999999998

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=99.33  E-value=1.6e-11  Score=117.02  Aligned_cols=216  Identities=13%  Similarity=0.126  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHhccCeEEEEEeC-----------CCCcHHHHHHH-------HHccCCcEEEEEehHHHH--HHHHhchh
Q 020952           12 IAYDAKLCQLLEEYTQILVAAAD-----------NVGSNQLQNIR-------RGLRGDSVVLMGKNTMMK--RTIRMHAE   71 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~~~-----------~v~~~ql~~iR-------~~Lr~~~~~~v~KNtl~r--~Al~~~~~   71 (319)
                      ...+.++|..+.....+++-.-+           +.....++++-       ..++|+.-|++.+-....  .-+.....
T Consensus        35 s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l~GnvgliFTn~~p~ev~~~l~~~k~  114 (323)
T PTZ00240         35 SQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLIFTNNEVQEITSVLDSHRV  114 (323)
T ss_pred             cHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhccccccccCCEEEEEeCCCHHHHHHHHHHcCC
Confidence            34677888888866666554211           11112356663       677887777777665543  33443322


Q ss_pred             hcCC-cc----ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhc
Q 020952           72 KTGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVL  144 (319)
Q Consensus        72 ~~~~-~~----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~L  144 (319)
                      ..+. .|    .+-..+  .|+     |+.+|. ....|.+...|+....|.  |..+.+++++|.. ++|++...|+.|
T Consensus       115 ~a~AraG~IAp~dVvvp--aG~-----T~~~P~-~~s~fq~LGIpTkI~kGkIeI~~d~~v~k~Ge~-V~~~~A~LL~~L  185 (323)
T PTZ00240        115 KAPARVGAIAPCDVIVP--AGS-----TGMEPT-QTSFFQALNIATKIAKGMVEIVTEKKVLSVGDK-VDNSTATLLQKL  185 (323)
T ss_pred             cccccCCCCCCceEEEC--CCC-----CCCCCc-chHHHHHcCCCeEecCcEEEEecCeEEecCCCC-cCHHHHHHHHHc
Confidence            2211 01    111222  455     667887 488999999999999998  7888889999998 999999999999


Q ss_pred             CcceEEecceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHH
Q 020952          145 NIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSM  224 (319)
Q Consensus       145 gIptki~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~  224 (319)
                      ||.+---+-+|     ..+...|...+++      -|+|....|.-++...+.+-..++-+.-++|++.+.-.+.+|+++
T Consensus       186 ~IkP~~~gl~l-----~~vyd~g~i~~~~------vL~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~si~~~i~~a~~~  254 (323)
T PTZ00240        186 NISPFYYQVEV-----LSVWDRGVLFTRE------DLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAATIGPMLVDAFKN  254 (323)
T ss_pred             CCCeEEEEEEE-----EEEEeCCeecCHH------HcCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            99998888887     5666678888886      466888888888888888877888999999999999999999999


Q ss_pred             HHHHHHHcCCCCCcChhHHHHHH
Q 020952          225 VTALALAISYPTLAAAPHMFVNA  247 (319)
Q Consensus       225 ~~~ls~~a~~pt~~~~p~~i~~a  247 (319)
                      +.+|+++++|+++++.+..+.+|
T Consensus       255 ~~alav~~~~~~~~~~~~~~~~A  277 (323)
T PTZ00240        255 LLAVSVATSYEFEEHNGKELREA  277 (323)
T ss_pred             HHHHhhhcCcCChhhHHHHHhhh
Confidence            99999999999999998877666

>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1e-11  Score=99.12  Aligned_cols=20  Identities=75%  Similarity=1.119  Sum_probs=16.1

Q ss_pred             hhccCCcccccCCCCCCCCC
Q 020952          300 EKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       300 ~~k~e~~ee~d~dmgfglFd  319 (319)
                      ++|+||+|||||||||+|||
T Consensus        93 e~keEe~eesddDmgf~lFd  112 (112)
T KOG3449|consen   93 EEKEEEKEESDDDMGFGLFD  112 (112)
T ss_pred             hhhhhhcccccccccccccC
Confidence            34455568999999999998

>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=8.9e-11  Score=93.76  Aligned_cols=86  Identities=36%  Similarity=0.464  Sum_probs=59.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCccccc--ccc
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAA--APV  285 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~--~~a  285 (319)
                      .||.+.+.           ++..++|+.+++.|-..+..++...               +|+++|.+.....+++  +++
T Consensus        16 ei~e~~l~-----------~vl~aaGveve~~r~k~lvaaLeg~---------------~idE~i~~~~~~~~a~a~a~a   69 (109)
T COG2058          16 EITEDNLK-----------SVLEAAGVEVEEARAKALVAALEGV---------------DIDEVIKNAAEAPAAAAAAGA   69 (109)
T ss_pred             cCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHhcCC---------------CHHHHHHHhcccccccCCccc
Confidence            67777776           8888999999999999999999995               9999999976532221  111


Q ss_pred             cC-----CCCCcch-hhhhhhhccCCcccccCCCCCCCCC
Q 020952          286 AG-----GGDAPAA-AAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       286 ~~-----~~~~~~~-~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      ++     +.++++. ++++++++++++||||+||||||||
T Consensus        70 aaa~~A~~~~a~~~~ea~eEe~eEe~~EE~~~~~lf~LF~  109 (109)
T COG2058          70 AAAAAAGAEAAAEADEAEEEEKEEEAEEESDDDMLFGLFG  109 (109)
T ss_pred             ccccccccccccchhhHHHHHhhhchhhcccccchhhccC
Confidence            11     1111111 2233334456677889999999998

>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed

Probab=98.77  E-value=4.8e-09  Score=84.51  Aligned_cols=86  Identities=33%  Similarity=0.402  Sum_probs=56.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccC
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAG  287 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~  287 (319)
                      .||.+.|.           ++..++|+.+.+.|+.+|.+++.+.               +|.++|.+.++..++++++++
T Consensus        16 ~it~e~I~-----------~IL~AAGveVee~~~k~~v~aL~Gk---------------dIeElI~~a~~~~~a~~~a~~   69 (106)
T PRK06402         16 EINEDNLK-----------KVLEAAGVEVDEARVKALVAALEDV---------------NIEEAIKKAAAAPVAAAAAAA   69 (106)
T ss_pred             CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHcCC---------------CHHHHHHhccccccccccccc
Confidence            68888876           8999999999999999999999995               999999998774443322222


Q ss_pred             CCCCcc-hhhh-hhhhccCCcccccCCCCCC---CCC
Q 020952          288 GGDAPA-AAAK-EEEKKEEPAEESDGDMGFS---LFD  319 (319)
Q Consensus       288 ~~~~~~-~~~~-~~~~k~e~~ee~d~dmgfg---lFd  319 (319)
                      ++++++ ++++ ++++++|+++++|++++.|   ||+
T Consensus        70 ~~~~~~~~~~~~~~~~~ee~~~~~ee~~~~gl~~lfg  106 (106)
T PRK06402         70 AAAAAAAAEEKKEEEEEEEEKEESEEEAAAGLGALFG  106 (106)
T ss_pred             ccccccccchhhhhhhhhhhccccHHHHHhhHHHhcC
Confidence            111111 1112 2223344455566666555   685

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=98.75  E-value=9.9e-08  Score=91.10  Aligned_cols=216  Identities=15%  Similarity=0.101  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHhccCeEEEEEe-------CCCC--cHHHHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-cc--
Q 020952           12 IAYDAKLCQLLEEYTQILVAAA-------DNVG--SNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA--   77 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~~-------~~v~--~~ql~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~~--   77 (319)
                      ...+.+||..+.....+++..-       .+..  ...+..|-..|+|+.-+.+.+...  +++.+.+.....+. .|  
T Consensus        37 s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~i  116 (310)
T PTZ00135         37 SKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVI  116 (310)
T ss_pred             HHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCC
Confidence            4567888888887655544421       1211  124778888899887777775543  33334443221111 01  


Q ss_pred             --ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecc
Q 020952           78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG  153 (319)
Q Consensus        78 --~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G  153 (319)
                        .+-..+  .|+     |..+|.. ...|.+...|+....|.  |..+.+++.+|.. ++|++...|+.|||..---+-
T Consensus       117 Ap~dv~ip--~G~-----t~~~P~~-~~~fq~LgipTkI~kG~I~I~~d~~v~k~Ge~-v~~~~A~LL~~L~I~p~~~~l  187 (310)
T PTZ00135        117 APIDVVIP--AGP-----TGMDPSQ-TSFFQALGIATKIVKGQIEITNEVHLIKEGQK-VGASQAVLLQKLNIKPFSYGL  187 (310)
T ss_pred             CCceEEEc--CCC-----CCCCcch-hhHHHHcCCceEecCCeEEEecCeEEecCCCC-cCHHHHHHHHHcCCCeEEEEE
Confidence              111112  355     6778885 78999999999999998  7888889999998 999999999999999988888


Q ss_pred             eEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcC
Q 020952          154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS  233 (319)
Q Consensus       154 ~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~  233 (319)
                      +|     ..+...|...+++      -|+|....+.-++...+.+-..++...-++|+..+...|.+|++++.+++++++
T Consensus       188 ~~-----~~~yd~g~~~~~~------vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~p~~ia~a~k~~~a~a~~~~  256 (310)
T PTZ00135        188 EV-----LSIYDNGSIYDAK------VLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHSILNAFKNLAAIGLESG  256 (310)
T ss_pred             EE-----EEEEECCeEeCHH------HcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcC
Confidence            88     4555566666665      355777666666666666655566777789999999999999999999999999


Q ss_pred             CCCCcChhHHHHHH
Q 020952          234 YPTLAAAPHMFVNA  247 (319)
Q Consensus       234 ~pt~~~~p~~i~~a  247 (319)
                      |+.+...+.....|
T Consensus       257 ~~~~~~~~~~~~~a  270 (310)
T PTZ00135        257 FTFPLAEKIKEALA  270 (310)
T ss_pred             CCChhhHHHHHhhc
Confidence            99888777544433

>TIGR03685 L21P_arch 50S ribosomal protein L12P

Probab=98.06  E-value=2.9e-06  Score=68.57  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCC
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSK  277 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a  277 (319)
                      .||.+.+.           .|...+|+.+++.|+.+|++++.+               .+|.++|.++.+
T Consensus        16 ~iT~e~I~-----------~IL~AAGv~ve~~~~~~la~~L~g---------------k~i~eli~~~~~   59 (105)
T TIGR03685        16 EINEENLK-----------AVLEAAGVEVDEARVKALVAALEG---------------VNIEEAIKKAAA   59 (105)
T ss_pred             CCCHHHHH-----------HHHHHhCCcccHHHHHHHHHHHcC---------------CCHHHHHHhhhc
Confidence            78888876           888899999999999999999988               599999988774

This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.

>cd05832 Ribosomal_L12p Ribosomal protein L12p

Probab=98.06  E-value=2.3e-06  Score=69.12  Aligned_cols=46  Identities=17%  Similarity=0.194  Sum_probs=40.5

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcc
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFA  279 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~  279 (319)
                      .||.+.+.           .|...+|+.+.+.|+.+|++++.+               .+|.++|++.++.+
T Consensus        16 eITae~I~-----------~IL~AAGveVd~~~~~ala~aL~g---------------kdIeElIa~~~~~~   61 (106)
T cd05832          16 EINEENLK-----------KVLEAAGIEVDEARVKALVAALEE---------------VNIDEAIKKAAVAA   61 (106)
T ss_pred             CCCHHHHH-----------HHHHHhCCcccHHHHHHHHHHHcC---------------CCHHHHHHhccccc
Confidence            68888877           888899999999999999999998               49999999988633

This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera

>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.004  Score=55.72  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=77.8

Q ss_pred             HHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCccccccccccCCceEEEE
Q 020952           15 DAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIF   93 (319)
Q Consensus        15 v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~G~~gliF   93 (319)
                      ..++...++++..+.++.+--++..++--.|.+||. +..|+..-|++++.+++++.       ++.|.++|.||.+++|
T Consensus        79 ~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~-------y~~l~plfvgnh~ill  151 (245)
T KOG4241|consen   79 LREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTP-------YSSLNPLFVGNHAILL  151 (245)
T ss_pred             HHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCc-------hhhhhhheeccceEEE
Confidence            345677889999999999999999999999999996 57999999999999999885       8999999999999999


Q ss_pred             ecCChHHHHHHHHhhc
Q 020952           94 TKGDLKEVKEEVAKYK  109 (319)
Q Consensus        94 T~~dp~~v~k~l~~~k  109 (319)
                      . .|+.+++.++...+
T Consensus       152 ~-~d~~kik~~lri~r  166 (245)
T KOG4241|consen  152 A-KDISKIKSILRITR  166 (245)
T ss_pred             c-CChHHHHHHHHHHh
Confidence            7 57888888887653

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=93.25  E-value=0.46  Score=41.76  Aligned_cols=128  Identities=16%  Similarity=0.205  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-cc--
Q 020952           12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA--   77 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~-------~~~v~--~~ql~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~~--   77 (319)
                      ...+.+||..+.....+++.-       +.+..  ...+..|...|+|..-+.+.+...  +.+.+.+.....+. .|  
T Consensus        30 ~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~liFt~~dp~~v~k~l~~~~~~~~ar~G~i  109 (175)
T cd05795          30 SKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAI  109 (175)
T ss_pred             hHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEEEECCCHHHHHHHHHHcCCcccccCCCc
Confidence            356778888888764444431       11221  112778888999887777775444  34445554322221 11  


Q ss_pred             --ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcce
Q 020952           78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPT  148 (319)
Q Consensus        78 --~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIpt  148 (319)
                        .+-..+  .|++     ..+|...- .|.+...|+....|.  |..+.+++.+|.. ++|++...|+.|||.+
T Consensus       110 A~~dvvi~--~G~t-----~~~p~~~~-~~~~lgiptki~~G~i~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~P  175 (175)
T cd05795         110 APCDVVVP--AGPT-----GMPPGPTS-FFQALGIPTKIEKGKIEIISDVVVVKKGEK-VGASEATLLNKLNIKP  175 (175)
T ss_pred             cCceEEEc--CCCc-----CCCCCchH-HHHHcCCceEEecCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCC
Confidence              111112  4653     45565544 899999999999998  7888899999998 9999999999999964

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=92.94  E-value=0.014  Score=45.51  Aligned_cols=43  Identities=9%  Similarity=0.052  Sum_probs=19.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHH--HHcCCCCCcChhHHHHHHHHH
Q 020952          208 DLSEDDLVEKFASSVSMVTALA--LAISYPTLAAAPHMFVNAYKN  250 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls--~~a~~pt~~~~p~~i~~a~~~  250 (319)
                      +||.+.|...+..+..++....  +-+.+.....+-.+|.+....
T Consensus         1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~~~   45 (88)
T PF00428_consen    1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGSAG   45 (88)
T ss_dssp             S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccccc
Confidence            3566777655555555333322  222233344444444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.

>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]

Probab=81.29  E-value=0.89  Score=36.84  Aligned_cols=15  Identities=20%  Similarity=0.180  Sum_probs=10.9

Q ss_pred             CcccccCCCCCCCCC
Q 020952          305 PAEESDGDMGFSLFD  319 (319)
Q Consensus       305 ~~ee~d~dmgfglFd  319 (319)
                      +++.++++..++||+
T Consensus        92 eEe~~EE~~~~~lf~  106 (109)
T COG2058          92 EEEAEEESDDDMLFG  106 (109)
T ss_pred             hhchhhcccccchhh
Confidence            344467889999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
3izr_s	319	Localization Of The Large Subunit Ribosomal Protein		1e-123
2zkr_g	317	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-74
3izs_s	312	Localization Of The Large Subunit Ribosomal Protein		2e-60
3o5h_M	312	Yeast 80s Ribosome. This Entry Consists Of The 60s		2e-59
3u5i_q	312	The Structure Of The Eukaryotic Ribosome At 3.0 A R		7e-52
3cc2_G	348	The Refined Crystal Structure Of The Haloarcula Mar		5e-24
1jj2_G	348	Fully Refined Crystal Structure Of The Haloarcula M		2e-23
3a1y_G	284	The Structure Of Protein Complex Length = 284		4e-23
3j21_k	339	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-22
3jsy_A	213	N-Terminal Fragment Of Ribosomal Protein L10 From M		1e-16
3jyw_8	118	Structure Of The 60s Proteins For Eukaryotic Riboso		6e-16

>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/319 (69%), Positives = 258/319 (80%)
Query: 1   MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60
           M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
Query: 61  MMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVA 120
           +++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVA
Sbjct: 61  LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAK
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 181 LGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240
           LGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXX 300
           PHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                      
Sbjct: 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEE 300
Query: 301 XXXXXXXXSDGDMGFSLFD 319
                   SDGD+G SLFD
Sbjct: 301 KKEEPEEESDGDLGMSLFD 319

>pdb|2ZKR|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/275 (50%), Positives = 189/275 (68%), Gaps = 2/275 (0%)
Query: 4   KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 63
           +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM+
Sbjct: 3   REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62
Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
           + IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +
Sbjct: 63  KAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGI 183
           V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 184 RPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243
            PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH 
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 278
            +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275

>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 312

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 185/311 (59%), Gaps = 4/311 (1%)
Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 6   EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 128
                 +  F  L+P ++GNVG +FT   L             APAR G VAP D+ V  
Sbjct: 66  FLSDLPD--FEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRA 123
Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++
Sbjct: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTF 183
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N Y
Sbjct: 184 GLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNY 243
Query: 249 KNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308
           K+++AVA+A  Y +P+ + + + + +P K+                              
Sbjct: 244 KDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEE 301
Query: 309 SDGDMGFSLFD 319
           SD DMGF LFD
Sbjct: 302 SDDDMGFGLFD 312

>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit Length = 312

Iteration: 1
 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 184/311 (59%), Gaps = 4/311 (1%)
Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 6   EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 128
                 +  F  L+P ++G VG +FT   L             APAR G VAP D+ V  
Sbjct: 66  FLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRA 123
Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++
Sbjct: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTF 183
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N Y
Sbjct: 184 GLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNY 243
Query: 249 KNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308
           K+++AVA+A  Y +P+ + + + + +P K+                              
Sbjct: 244 KDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEE 301
Query: 309 SDGDMGFSLFD 319
           SD DMGF LFD
Sbjct: 302 SDDDMGFGLFD 312

>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome B Length = 312

Iteration: 1
 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 169/311 (54%), Gaps = 4/311 (1%)
Query: 9   EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
           EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 6   EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 69  HAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPP 128
                 +  F  L+P ++GNVG +FT   L             APAR G VAP D+ V  
Sbjct: 66  FLSDLPD--FEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRA 123
Query: 129 GNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++
Sbjct: 124 VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTF 183
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL V  VY+NG V+                        +++LAI YPTL +  H  +N Y
Sbjct: 184 GLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNY 243
Query: 249 KNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 308
           K+++AVA+A  Y +P+ + + + + +P K+                              
Sbjct: 244 KDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEE 301
Query: 309 SDGDMGFSLFD 319
           SD DMGF LFD
Sbjct: 302 SDDDMGFGLFD 312

>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 348

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 127/256 (49%), Gaps = 7/256 (2%)
Query: 10  KKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMH 69
           K+   DA + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +   
Sbjct: 16  KQEEVDA-IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL--- 71
Query: 70  AEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPG 129
                +    +L   + G VGLI T  +              AP   G VAP D+V+P G
Sbjct: 72  --DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG 129
Query: 130 NTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
           +TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   
Sbjct: 130 DTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEV 189
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL +++V+ +G ++ PE L+L  D+      ++      L++   YPT   AP M  +A 
Sbjct: 190 GLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSAR 249
Query: 249 KNVVAVALATEYSFPQ 264
            N  ++AL      P+
Sbjct: 250 GNAKSLALQAAIEDPE 265

>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 348

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 7/256 (2%)
Query: 10  KKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMH 69
           K+   DA + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +   
Sbjct: 16  KQEEVDA-IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL--- 71
Query: 70  AEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPG 129
                +    +L   + G VGLI T  +              AP   G VAP D+V+P G
Sbjct: 72  --DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG 129
Query: 130 NTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188
           +TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   
Sbjct: 130 DTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEV 189
Query: 189 GLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 248
           GL +++V+ +G ++ PE L+L  D+      ++      L++   YPT   AP M  +  
Sbjct: 190 GLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDR 249
Query: 249 KNVVAVALATEYSFPQ 264
            N  ++AL      P+
Sbjct: 250 GNAKSLALQAAIEDPE 265

>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 2/258 (0%)
Query: 5   ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMK 63
           A  AE K     +L +L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++
Sbjct: 2   AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIE 61
Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             I+  A++ G      L+  +    G++ T  +              APA+ G V P D
Sbjct: 62  LAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKD 121
Query: 124 VVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182
           VVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LG
Sbjct: 122 VVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALG 181
Query: 183 IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242
           I+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      
Sbjct: 182 IQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA 241
Query: 243 MFVNAYKNVVAVALATEY 260
           +   A+ N   VA+   Y
Sbjct: 242 IIQKAFLNAKTVAIEAGY 259

>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 2/258 (0%)
Query: 5   ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMK 63
           A  AE K     +L  L++ Y  + +    ++ +  L  +RR +R ++ +L + +NT+++
Sbjct: 2   AHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIE 61
Query: 64  RTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPID 123
             I+  A++ G      LI  ++G  G++ T  +              APA+ G   P D
Sbjct: 62  LAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKD 121
Query: 124 VVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182
           VV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LG
Sbjct: 122 VVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALG 181
Query: 183 IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242
           I+P   GL + +VYE+G +Y+P+VL + E + +     +      LA+ I+YPT      
Sbjct: 182 IQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEA 241
Query: 243 MFVNAYKNVVAVALATEY 260
           +   A+ N  AVA+   Y
Sbjct: 242 IIQKAFLNAKAVAVEAGY 259

>pdb|3JSY|A Chain A, N-Terminal Fragment Of Ribosomal Protein L10 From Methanococ Jannaschii Length = 213

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 1/182 (0%)
Query: 35  NVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFT 94
           +V + QLQ IR  +R    + M +NT++ R ++  AE+  N     L   ++    ++ T
Sbjct: 29  DVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVT 88
Query: 95  KGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKG 153
             +              AP R G +AP D+ V  G+TG+ P       + + IP  I KG
Sbjct: 89  DMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKG 148
Query: 154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 213
            + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ 
Sbjct: 149 KIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEK 208
Query: 214 LV 215
           L+
Sbjct: 209 LL 210

>pdb|3JYW|8 Chain 8, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 118

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 9  EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRM 68
          EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR 
Sbjct: 4  EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 63
Query: 69 HAEKTGNTAFLNLIPLLQGNVGLIFT 94
                +  F  L+P ++G VG +FT
Sbjct: 64 FLSDLPD--FEKLLPFVKGYVGFVFT 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	100.0
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	100.0
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	100.0
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	100.0
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	100.0
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	100.0
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	100.0
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	99.86
1zav_A	180	50S ribosomal protein L10; ribosome structure and	99.86
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	99.82
3iz5_t	110	60S acidic ribosomal protein P11 - P1 (L12P); euka	99.7
3izc_t	106	60S acidic ribosomal protein RPP11 (P1); eukaryoti	99.7
3iz5_v	113	60S acidic ribosomal protein P21 - P2 (L12P); euka	99.61
3izc_v	106	60S acidic ribosomal protein (P2); eukaryotic ribo	99.6
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	99.34
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	99.14
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	98.86
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	98.83
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	98.76
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	98.63
2lbf_A	69	60S acidic ribosomal protein P1; ribosome, stalk,	96.57
2lbf_B	70	60S acidic ribosomal protein P2; ribosome, stalk,	93.0
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	92.83
3a1y_A	58	50S ribosomal protein P1 (L12P); stalk, helix SPIN	92.41

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=100.00  E-value=1.3e-95  Score=689.93  Aligned_cols=309  Identities=44%  Similarity=0.748  Sum_probs=137.0

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccccC
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQ   86 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~   86 (319)
                      +|+||+++|++|+++|++|+++||++|+|++++|+++||+.||+.++++|+||||||+|++++.++  .+++++|.++|+
T Consensus         4 ~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~le~L~~~L~   81 (312)
T 3u5i_q            4 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLPFVK   81 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSS--SCGGGGTGGGCC
T ss_pred             cHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCccc--ccChHHHHHhcc
Confidence            699999999999999999999999999999999999999999988899999999999999997544  345999999999


Q ss_pred             CceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeec
Q 020952           87 GNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRK  166 (319)
Q Consensus        87 G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~  166 (319)
                      ||+||+|||+||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++||||+|||||+|++|+|+|.+|++||++
T Consensus        82 G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k~  161 (312)
T 3u5i_q           82 GNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDA  161 (312)
T ss_dssp             SSEEEEEESSCHHHHHHHHHTSSCCC------------------------------------------------------
T ss_pred             CCEEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHH
Q 020952          167 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVN  246 (319)
Q Consensus       167 G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~  246 (319)
                      ||+||++||+||++|||+|++|++.|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++||+|.|
T Consensus       162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~  241 (312)
T 3u5i_q          162 GNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLIN  241 (312)
T ss_dssp             ----------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC--------------------
T ss_pred             CCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccCCCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          247 AYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       247 a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      +|+++++|+++++|+||+++++|++|+||++|++|+ |+++++++++++ +++++++||+|||||||||||||
T Consensus       242 a~k~~~a~a~~~~~~~~~~~~ik~~la~p~a~a~aa-~~a~~~~~~~~~-~~~~~~~e~~ee~d~d~gf~lfd  312 (312)
T 3u5i_q          242 NYKDLLAVAIAASYHYPEIEDLVDRIENPEKYAAAA-PAATSAASGDAA-PAEEAAAEEEEESDDDMGFGLFD  312 (312)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhcccCccchhHHHHHhChhhhhccc-cccccccccccc-ccccccccccccccccCCCCCCC
Confidence            999999999999999999999999999999998876 444322222222 23334456678899999999998

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.7e-95  Score=689.11  Aligned_cols=316  Identities=52%  Similarity=0.844  Sum_probs=29.2

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccc
Q 020952            1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN   80 (319)
Q Consensus         1 m~~~~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~   80 (319)
                      |+ ++.+++||+++|++|+++|++|++++|++|+||+++|+++||+.||+.++|+|+||||||+||+++.+.  .+++++
T Consensus         1 ~~-~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~~e~   77 (317)
T 2zkr_g            1 MP-REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEK   77 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CC-ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCccc--ccchhh
Confidence            66 777899999999999999999999999999999999999999999988999999999999999998543  345999


Q ss_pred             cccccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecC
Q 020952           81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (319)
Q Consensus        81 L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d  160 (319)
                      |.++|+||+||+||++||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|
T Consensus        78 L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d  157 (317)
T 2zkr_g           78 LLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD  157 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcCh
Q 020952          161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA  240 (319)
Q Consensus       161 ~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~  240 (319)
                      ++||++||+||++||+||++|||+|++|+|+|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++
T Consensus       158 ~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~  237 (317)
T 2zkr_g          158 VQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASV  237 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccCCCC-CcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952          241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGD-APAAAAKEEEKKEEPAEESDGDMGFSLFD  319 (319)
Q Consensus       241 p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~~~~-~~~~~~~~~~~k~e~~ee~d~dmgfglFd  319 (319)
                      ||+|.|+|+++++|+++++|+||+++++|++|+||++++++++|+|++++ +++++++++++++||+|||||||||||||
T Consensus       238 ~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~~~~~~a~a~~a~~~~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd  317 (317)
T 2zkr_g          238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD  317 (317)
T ss_dssp             -----------------------CHHHHHTTTHHHHHHHHHHHHHTTSSHHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred             HHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhccCccccccccccccccccccccccccccccCCccccccccCcCCCC
Confidence            99999999999999999999999999999999999998766323332221 11222233444456678889999999998

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=8.7e-81  Score=595.73  Aligned_cols=259  Identities=27%  Similarity=0.485  Sum_probs=206.1

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHHhchhhcCCccccccccc
Q 020952            6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL   84 (319)
Q Consensus         6 ~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~-~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~   84 (319)
                      +.++||+++|++|+++|++|+++||++|+||+++|+++||+.||+. ++|+|+||||||+|++++.++++.+++++|.++
T Consensus         3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~   82 (339)
T 3j21_k            3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY   82 (339)
T ss_dssp             ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence            3689999999999999999999999999999999999999999975 899999999999999999777777789999999


Q ss_pred             cCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcc-hhhhhhcCcceEEecceEEEecCeeE
Q 020952           85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVEL  163 (319)
Q Consensus        85 l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~v  163 (319)
                      |+||+||+|||+||.+++++|.+|++++|||+|+|||+||+||+|||++.|++ +++||+|||||+|++|+|+|.+|++|
T Consensus        83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v  162 (339)
T 3j21_k           83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV  162 (339)
T ss_dssp             CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred             hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence            99999999999999999999999999999999999999999999999999999 59999999999999999999999999


Q ss_pred             eecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHH
Q 020952          164 IRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM  243 (319)
Q Consensus       164 ~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~  243 (319)
                      |++|++||++||+||++|||+|++|++.|+++|++|.+|++++|+||+|+|++.|++|++++.+||+++||||++++||+
T Consensus       163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~  242 (339)
T 3j21_k          163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAI  242 (339)
T ss_dssp             ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC-------------------------
T ss_pred             EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCC
Q 020952          244 FVNAYKNVVAVALATEYSFPQ  264 (319)
Q Consensus       244 i~~a~~~~~al~~~~~~~~~~  264 (319)
                      |+|||+++++|+++++|++|+
T Consensus       243 i~~a~k~~lala~~~~~~~~e  263 (339)
T 3j21_k          243 IQKAFLNAKAVAVEAGYITKE  263 (339)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHhhcCCCChh
Confidence            999999999999999999987

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=100.00  E-value=1.3e-76  Score=566.46  Aligned_cols=266  Identities=26%  Similarity=0.469  Sum_probs=28.3

Q ss_pred             cccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccc
Q 020952            5 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL   84 (319)
Q Consensus         5 ~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~   84 (319)
                      +++++||.++|++|+++|++|+++||++|+|++++|+++||+.||+.++|+|+||||||+||+++..     +++.|.++
T Consensus        10 k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~-----~le~L~~~   84 (348)
T 1vq8_G           10 ETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD-----GLEDLNGY   84 (348)
T ss_dssp             --CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC----------------
T ss_pred             cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc-----chHHHHHh
Confidence            4568999999999999999999999999999999999999999998799999999999999998742     38999999


Q ss_pred             cCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcch-hhhhhcCcceEEecceEEEecCeeE
Q 020952           85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVEL  163 (319)
Q Consensus        85 l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~-~~fq~LgIptki~~G~I~i~~d~~v  163 (319)
                      |+|++||+||++||.+++++|.+|++++|||+|.+||+||+||+|+|+++|+++ ++||+|||||+|++|+|+|.+|++|
T Consensus        85 LkG~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v  164 (348)
T 1vq8_G           85 ITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTV  164 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceEE
Confidence            999999999999999999999999999999999999999999999999999996 9999999999999999999999999


Q ss_pred             eecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHH
Q 020952          164 IRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM  243 (319)
Q Consensus       164 ~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~  243 (319)
                      |++|++||++||+||++|||+|++|++.|+++|++|.+|++++|+||+|+|+++|++|++++++||+++||||++++||+
T Consensus       165 ~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~  244 (348)
T 1vq8_G          165 LDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTM  244 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCC
Q 020952          244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSK  277 (319)
Q Consensus       244 i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a  277 (319)
                      |.|||+++++|+++++|+||+.  +..+|+..-+
T Consensus       245 i~~a~~~~~ala~~~~~~~~~~--~~~il~kA~~  276 (348)
T 1vq8_G          245 LQSDRGNAKSLALQAAIEDPEV--VPDLVSKADA  276 (348)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHhcCcCChhh--HHHHHHHHHH
Confidence            9999999999999999999984  5566665443

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.1e-71  Score=516.37  Aligned_cols=267  Identities=28%  Similarity=0.487  Sum_probs=187.3

Q ss_pred             cccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHHhchhhcCCcccccccc
Q 020952            5 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP   83 (319)
Q Consensus         5 ~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~-~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~   83 (319)
                      +++++||+++|++|++++++|+.++|++|+|++++|+++||+.||+. ++|+|+||||||+|++++.++++.++++.|.+
T Consensus         2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~   81 (284)
T 3a1y_G            2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE   81 (284)
T ss_dssp             CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence            45789999999999999999999999999999999999999999965 89999999999999999987777778999999


Q ss_pred             ccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcch-hhhhhcCcceEEecceEEEecCee
Q 020952           84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE  162 (319)
Q Consensus        84 ~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~-~~fq~LgIptki~~G~I~i~~d~~  162 (319)
                      +|+|++||+||++||.+++++|.+|+.++|+|+|.|+++||+||+|+|++.|+++ ++||+|||||+|++|+|+|.+|++
T Consensus        82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~  161 (284)
T 3a1y_G           82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT  161 (284)
T ss_dssp             CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred             hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence            9999999999999999999999999999999999999999999999999977775 999999999999999999999999


Q ss_pred             EeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhH
Q 020952          163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH  242 (319)
Q Consensus       163 v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~  242 (319)
                      ||++|++|+++||+||++|||+|++|++.++++|++|.+|++++|+||+|++...|.+|++++.+||+++||||++++||
T Consensus       162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~  241 (284)
T 3a1y_G          162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA  241 (284)
T ss_dssp             ---------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHH
T ss_pred             EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCcccHHHHhc
Q 020952          243 MFVNAYKNVVAVALATEYSFPQADKVKEYLA  273 (319)
Q Consensus       243 ~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~  273 (319)
                      +|.|||+++++||++++|+||+  .+.++|+
T Consensus       242 ~i~ka~~~~~ala~~~~~~~~~--~~~~~~~  270 (284)
T 3a1y_G          242 IIQKAFLNAKTVAIEAGYITKE--TIQDIIG  270 (284)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTT--THHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCChh--hHHHHHH
Confidence            9999999999999999999998  5666774

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.5e-66  Score=467.05  Aligned_cols=209  Identities=30%  Similarity=0.487  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccccCC
Q 020952            8 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG   87 (319)
Q Consensus         8 ~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~G   87 (319)
                      ++||+++|++|++++++|+++||++|+|++++|+++||+.||+.++|+|+||||||+|++++.++++.+++++|.++|+|
T Consensus         2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            48999999999999999999999999999999999999999988899999999999999999877778889999999999


Q ss_pred             ceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcc-hhhhhhcCcceEEecceEEEecCeeEeec
Q 020952           88 NVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRK  166 (319)
Q Consensus        88 ~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~v~~~  166 (319)
                      |+||+||++||.+++++|.+|++++|||+|++||+||+||+|+|++.|++ +++||+|||||+|++|+|+|.+|++||++
T Consensus        82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~  161 (213)
T 3jsy_A           82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK  161 (213)
T ss_dssp             SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred             CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence            99999999999999999999999999999999999999999999999999 59999999999999999999999999999


Q ss_pred             CcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHH
Q 020952          167 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVE  216 (319)
Q Consensus       167 G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~  216 (319)
                      ||+||++||+||++|||+|++|++.++++|++|.+|++++|+||+|+|.+
T Consensus       162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~  211 (213)
T 3jsy_A          162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLA  211 (213)
T ss_dssp             TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTS
T ss_pred             CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhh
Confidence            99999999999999999999999999999999999999999999998764

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=99.86  E-value=1.2e-21  Score=171.81  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC----CcEEEEEehHHHHHHHHhchhhcCCccccccc
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG----DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI   82 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~----~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~   82 (319)
                      +|+||.++|++|++++++|+.+++++|+|+++.|+++||++||+    +++|+|+|||||++|++++.       ++.|.
T Consensus         4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~-------~~~L~   76 (180)
T 1zav_A            4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGYE   76 (180)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSCG
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCC-------hhhHH
Confidence            48999999999999999999999999999999999999999995    48999999999999999863       89999


Q ss_pred             cccCCceEEEEec-CChHHHHHHHHhhcc
Q 020952           83 PLLQGNVGLIFTK-GDLKEVKEEVAKYKV  110 (319)
Q Consensus        83 ~~l~G~~gliFT~-~dp~~v~k~l~~~k~  110 (319)
                      ++|+|+++++||+ +||.+++++|.+|..
T Consensus        77 ~~l~G~~a~~fs~~~dp~~~ak~l~~f~k  105 (180)
T 1zav_A           77 EFLKGPTAVLYVTEGDPVEAVKIIYNFYK  105 (180)
T ss_dssp             GGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred             HhCcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence            9999999999999 999999999999854

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=99.82  E-value=5.6e-22  Score=171.52  Aligned_cols=97  Identities=14%  Similarity=0.210  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCcccccccccc
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL   85 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l   85 (319)
                      +|++|.++|++|++.|++|+.++++||+|++++|+++||+.||+ +++|+|+||||+++|++++       +++.|.++|
T Consensus         4 ~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~-------~~~~L~~~l   76 (165)
T 3sgf_H            4 NLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGT-------PFECLKDAF   76 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTC-------TTTCTTCST
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcC-------CcchhHHhC
Confidence            59999999999999999999999999999999999999999997 5899999999999999985       399999999


Q ss_pred             CCceEEEEecCChHHHHHHHHhhcc
Q 020952           86 QGNVGLIFTKGDLKEVKEEVAKYKV  110 (319)
Q Consensus        86 ~G~~gliFT~~dp~~v~k~l~~~k~  110 (319)
                      +||++++||++||.++++++.+|..
T Consensus        77 ~G~tai~fs~~dp~~~aK~l~~f~K  101 (165)
T 3sgf_H           77 VGPTLIAYSMEHPGAAARLFKEFAK  101 (165)
T ss_dssp             TCCSCCCEEEECSSCSHHHHHHHHH
T ss_pred             cCCEEEEEeCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.34  E-value=2.2e-13  Score=130.00  Aligned_cols=227  Identities=13%  Similarity=0.144  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-cc
Q 020952           13 AYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA   77 (319)
Q Consensus        13 ~~v~~l~e~l~~y~~v~vv~~~~v~~~q------------l~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~~   77 (319)
                      ..+.+||..+......++|-=..+-..-            +..|-..|+|..-|.+.+...  +++.|.......+. .|
T Consensus        36 ~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~G  115 (339)
T 3j21_k           36 YPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPG  115 (339)
T ss_dssp             THHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTT
T ss_pred             HHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCHHHHHHHHHHcCCcccccCC
Confidence            3567788888876444444222222222            233344567777777776554  44445543211111 00


Q ss_pred             ----ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEe
Q 020952           78 ----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN  151 (319)
Q Consensus        78 ----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~  151 (319)
                          .+-..+  .|+     |...|..+...|.+...|+....|.  |....+++++|++ ++|++...|+.|||.+.-.
T Consensus       116 aiAp~dV~Ip--~G~-----t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~  187 (339)
T 3j21_k          116 AKVPKDVVIP--AGP-----TSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEE-ITPELANILNALGIQPLEV  187 (339)
T ss_dssp             CBCSSCEEEC--CEE-----CSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCSCC
T ss_pred             CcCCceEEec--CCC-----CCCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEEe
Confidence                011111  355     5678999889999999999999999  7778889999998 9999999999999999988


Q ss_pred             cceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHH
Q 020952          152 KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALA  231 (319)
Q Consensus       152 ~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~  231 (319)
                      +-+|     ..+...|...+++      .|.|....|.-.+...+.+...++-++-++|++.+...+.+|++++.+|+.+
T Consensus       188 ~l~l-----~~~~~~g~i~~~~------~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~  256 (339)
T 3j21_k          188 GLDL-----LAVYEDGIIYTPD------VLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE  256 (339)
T ss_dssp             SCEE-----EEEEETTEEECHH------HHCCCHHHHHHHC---------------------------------------
T ss_pred             eeeE-----EEEEeCCcEecHH------hCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            8888     5677788889996      5779999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcChhHHHHHHHHHHHHHHHhc
Q 020952          232 ISYPTLAAAPHMFVNAYKNVVAVALAT  258 (319)
Q Consensus       232 a~~pt~~~~p~~i~~a~~~~~al~~~~  258 (319)
                      ++|.++++++.++.+|++++++++...
T Consensus       257 ~~~~~~e~~~~~l~ka~~~~~alaa~~  283 (339)
T 3j21_k          257 AGYITKETISDIIGRAIRAMLLLAQQL  283 (339)
T ss_dssp             ---------------------------
T ss_pred             cCCCChhhHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999887654

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=99.14  E-value=4.3e-12  Score=121.10  Aligned_cols=154  Identities=17%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             ecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCcccC
Q 020952           94 TKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVG  171 (319)
Q Consensus        94 T~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~  171 (319)
                      |..+|..+...|.+...|+....|.  |....+++++|.. ++|++...|+.|||...--+-+|     ..+...|...+
T Consensus       131 t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~-v~~~~A~LL~~LgI~p~~f~l~l-----~~~~d~g~~~~  204 (348)
T 1vq8_G          131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE-VSQELSNVLNELGIEPKEVGLDL-----RAVFADGVLFE  204 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCC-cCHHHHHHHHHcCCCceeeeeee-----EEEEeCCcccC
Confidence            4457888889999999999999997  7778889999998 99999999999999998888777     45566777778


Q ss_pred             hhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHH
Q 020952          172 SSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNV  251 (319)
Q Consensus       172 ~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~  251 (319)
                      ++.      |.|....|.-++...+.+-..++-++-++|++.+.-.+.+|++++.+|+++++|.++++++.++.+|+.++
T Consensus       205 ~~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~~~~il~kA~~~~  278 (348)
T 1vq8_G          205 PEE------LELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQV  278 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHH------ccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHH
Confidence            864      56999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q 020952          252 VAVALATE  259 (319)
Q Consensus       252 ~al~~~~~  259 (319)
                      ++|+...+
T Consensus       279 ~ala~~~~  286 (348)
T 1vq8_G          279 RALASQID  286 (348)
T ss_dssp             --------
T ss_pred             HHHHHhcC
Confidence            99988765

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=98.83  E-value=7.3e-09  Score=96.52  Aligned_cols=230  Identities=11%  Similarity=0.118  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-c
Q 020952           12 IAYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T   76 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~~~~v~~~q------------l~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~   76 (319)
                      ...+.+||..+.+...-+.+-=..+-..-            +..|-..|+|..-+.+.+...  +++.+.+...+.+. .
T Consensus        35 ~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~  114 (284)
T 3a1y_G           35 AYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKP  114 (284)
T ss_dssp             HHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCHHHHHHHHHHCCCC-----
T ss_pred             HHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCHHHHHHHHHHhcchhhhhc
Confidence            35677888888877555555433343333            333444567766677765433  44555544211111 0


Q ss_pred             c-cccccc-ccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEec
Q 020952           77 A-FLNLIP-LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK  152 (319)
Q Consensus        77 ~-~~~L~~-~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~  152 (319)
                      | +..-.- .-.|+     |...|..+...|.+...|.....|.  |..+..++.+|.. ++|++...|+.|||...--+
T Consensus       115 Gaia~~dv~ip~g~-----~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~-l~~~~a~lL~~L~i~~~~~~  188 (284)
T 3a1y_G          115 GAVVPKDVVVPAGP-----TPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEV-ITPELANILNALGIQPLEVG  188 (284)
T ss_dssp             --------------------------------------------------------------------------CCCCCC
T ss_pred             CCccceeEEecCCC-----CCCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCC-cCHHHHHHHHHcCCCHHHHH
Confidence            0 000000 11344     4456888889999999999999998  5677789999997 99999999999999998888


Q ss_pred             ceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHc
Q 020952          153 GTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAI  232 (319)
Q Consensus       153 G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a  232 (319)
                      -.|     ..+...|...+++.      |.|.+..+...+...+.+...++.+.-++|++.+...+.+|++++.+|+.++
T Consensus       189 l~i-----~~~~~~~~~~~~~v------l~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~~  257 (284)
T 3a1y_G          189 LDV-----LAVYEDGIVYTPDV------LAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEA  257 (284)
T ss_dssp             CEE-----EEEEETTEEECHHH------HSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH-----HHHhhccccCCHHH------ccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            887     56677888888864      4588888888888888888888889999999999999999999999999999


Q ss_pred             CCCCCcChhHHHHHHHHHHHHHHHhc
Q 020952          233 SYPTLAAAPHMFVNAYKNVVAVALAT  258 (319)
Q Consensus       233 ~~pt~~~~p~~i~~a~~~~~al~~~~  258 (319)
                      +|.++++++.++++|+.++++|+...
T Consensus       258 ~~~~~~~~~~~~~ka~~~~~~l~~~~  283 (284)
T 3a1y_G          258 GYITKETIQDIIGRAFRAMLLLAQQL  283 (284)
T ss_dssp             TCCCTTTHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999998643

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=98.76  E-value=1e-09  Score=103.43  Aligned_cols=208  Identities=13%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-cc--
Q 020952           12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA--   77 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~-------~~~v~--~~ql~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~~--   77 (319)
                      ...+.+||..+.....++++.       +.+..  ...+.+|-..|+|..-+.+.+...  +++.|.......+. .|  
T Consensus        35 v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~Gai  114 (312)
T 3u5i_q           35 SQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAV  114 (312)
T ss_dssp             HHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHHHHHHHTSSCCC-------
T ss_pred             HHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHHHHHHHhccCcccccCCCc
Confidence            356778888888765544331       11211  124556666778777777776543  33344433211110 00  


Q ss_pred             --ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecc
Q 020952           78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG  153 (319)
Q Consensus        78 --~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G  153 (319)
                        .+-..+  .|+++     .+|.. ...|.+...|+....|.  |....+++++|++ ++|++...|+.|||...--+-
T Consensus       115 Ap~dV~Ip--~G~tg-----~~P~~-~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l  185 (312)
T 3u5i_q          115 APEDIWVR--AVNTG-----MEPGK-TSFFQALGVPTKIARGTIEIVSDVKVVDAGNK-VGQSEASLLNLLNISPFTFGL  185 (312)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CCceEEEC--CCCCC-----CCCcc-hHHHHHcCCCeEeeCCEEEEccceEEEeCCCC-cCHHHHHHHHHcCcCcEEEEE
Confidence              111112  57754     56665 67799999999999998  6677789999998 999999999999999998888


Q ss_pred             eEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcC
Q 020952          154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS  233 (319)
Q Consensus       154 ~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~  233 (319)
                      +|     ..+...|...+++      .|+|....|.-++...+.+-..++-++-++|++.+.-.+.+|++++.+|+++++
T Consensus       186 ~l-----~~~~d~g~i~~~~------~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~  254 (312)
T 3u5i_q          186 TV-----VQVYDNGQVFPXX------XXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAAS  254 (312)
T ss_dssp             EE-----EEEEESSCCCCST------TTSCCSSTTTHHHHHHHTTCC---------------------------------
T ss_pred             EE-----EEEecCCceeccc------cccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88     5677788999997      467999999999999999988899999999999999999999999999999999


Q ss_pred             CCCCcC
Q 020952          234 YPTLAA  239 (319)
Q Consensus       234 ~pt~~~  239 (319)
                      |..+..
T Consensus       255 ~~~~~~  260 (312)
T 3u5i_q          255 YHYPEI  260 (312)
T ss_dssp             ------
T ss_pred             ccCccc
Confidence            976654

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=98.63  E-value=7.7e-10  Score=104.48  Aligned_cols=176  Identities=12%  Similarity=0.135  Sum_probs=0.0

Q ss_pred             HHHHHHHHccCCcEEEEEehHHH--HHHHHhchhhcCC-cc----ccccccccCCceEEEEecCChHHHHHHHHhhccCc
Q 020952           40 QLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGA  112 (319)
Q Consensus        40 ql~~iR~~Lr~~~~~~v~KNtl~--r~Al~~~~~~~~~-~~----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~  112 (319)
                      .+..|-..|+|..-+.+.+....  ++.+.+.....+. .|    .+-..+  .|+++     .+|.. ...|.+...|+
T Consensus        74 ~~e~L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip--~G~t~-----~~p~~-~~~fq~LgipT  145 (317)
T 2zkr_g           74 ALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVP--AQNTG-----LGPEK-TSFFQALGITT  145 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhhhhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeC--CCCCC-----CCCcc-hHHHHHcCCCe
Confidence            56667777777666655544322  2223322111110 00    111222  56643     45666 57899999999


Q ss_pred             cccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccc
Q 020952          113 PARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGL  190 (319)
Q Consensus       113 ~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l  190 (319)
                      ....|.  |....+++++|+. ++|++...|+.|||...--+-+|     ..+...|...+++.      |+|....|.-
T Consensus       146 kI~kG~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l~l-----~~~~d~g~~~~~~~------L~i~~e~~~~  213 (317)
T 2zkr_g          146 KISRGTIEILSDVQLIKTGDK-VGASEATLLNMLNISPFSFGLVI-----QQVFDNGSIYNPEV------LDITEETLHS  213 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeeCCeEEEecceEEecCCCC-cCHHHHHHHHHcCCCceeeeeee-----eEEEecCcccchHh------ccCCHHHHHH
Confidence            999998  7788889999998 99999999999999998888777     45667777888864      5699999999


Q ss_pred             eeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCC
Q 020952          191 VVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYP  235 (319)
Q Consensus       191 ~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~p  235 (319)
                      ++...+.+-..++-++-++|++.+.-.+.+|++++.+|+++++|.
T Consensus       214 ~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~  258 (317)
T 2zkr_g          214 RFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT  258 (317)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            999999998889999999999999999999999999999999984

>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}

Probab=96.57  E-value=0.0017  Score=47.56  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=41.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcc
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFA  279 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~  279 (319)
                      .||.+++.           ++..++|+.+++.||.+|++++.+               .+|+++|+|+++++
T Consensus        22 ~~ta~~I~-----------~il~AaGveve~~~~~lf~~aL~g---------------k~I~elI~~~g~g~   67 (69)
T 2lbf_A           22 TVTEDKIN-----------ALIKAAGVNVEPFWPGLFAKALAN---------------VNIGSLICNVGAGG   67 (69)
T ss_dssp             CCCHHHHH-----------HHHHHHTCCCCTHHHHHHHHHTTT---------------SCGGGGGTTTTCCC
T ss_pred             CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHCC---------------CCHHHHHHhccCCC
Confidence            67888876           889999999999999999999998               59999999988654

>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A

Probab=93.00  E-value=0.14  Score=37.32  Aligned_cols=44  Identities=7%  Similarity=0.111  Sum_probs=38.8

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCC
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSK  277 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a  277 (319)
                      .||.+++.           ++..++|+.+++.||.+|++++.+               .+|+++|++...
T Consensus        18 ~~ta~~I~-----------~il~aaGvevd~~~~~~~~~aL~g---------------k~i~elIa~g~~   61 (70)
T 2lbf_B           18 SPSAKDIK-----------KILDSVGIEADDDRLNKVISELNG---------------KNIEDVIAQGIG   61 (70)
T ss_dssp             SCCHHHHH-----------HHHHTTTCCCCTTHHHHHHHHHSS---------------CCHHHHHTTCSS
T ss_pred             CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHcC---------------CCHHHHHHHHHH
Confidence            57777776           889999999999999999999998               599999988664

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=92.83  E-value=0.11  Score=45.84  Aligned_cols=151  Identities=11%  Similarity=0.094  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhccCeEEEEEeCCCC------------cHHHHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-c
Q 020952           12 IAYDAKLCQLLEEYTQILVAAADNVG------------SNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T   76 (319)
Q Consensus        12 ~~~v~~l~e~l~~y~~v~vv~~~~v~------------~~ql~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~   76 (319)
                      ...+.+||..+.... .+++-=..+-            ...+.+|-..|+|..-+.+.+...  +++.+.......+. .
T Consensus        32 ~~ql~~lR~~lr~~~-~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~  110 (213)
T 3jsy_A           32 APQLQEIRDKIRDKV-KLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRG  110 (213)
T ss_dssp             HHHHHHHHHHHTTTE-EEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHHHHHHSCEEECCCT
T ss_pred             HHHHHHHHHHHhCCC-EEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHHHHHHcCCcccccC
Confidence            345677888887653 3333111110            013445556678777777776544  33344443211111 0


Q ss_pred             c----ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEE
Q 020952           77 A----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI  150 (319)
Q Consensus        77 ~----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki  150 (319)
                      |    .+-..+  .|+++     ..|..+...|.+...|+....|.  |....+++++|++ ++|++...|+.|||...-
T Consensus       111 GaiAp~dV~ip--~G~t~-----~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~  182 (213)
T 3jsy_A          111 GQIAPCDIKVE--KGSTG-----MPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEV-VSPKLAAVLDRLGIKPIK  182 (213)
T ss_dssp             TCBCSSCEEEC--SEEEE-----ECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHTTCCCEE
T ss_pred             CCcCCceEEEC--CCCCC-----CCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEE
Confidence            1    011111  46644     47888889999999999999998  7788889999998 999999999999999999


Q ss_pred             ecceEEEecCeeEeecCcccChhHHH
Q 020952          151 NKGTVEIITPVELIRKGDKVGSSEAA  176 (319)
Q Consensus       151 ~~G~I~i~~d~~v~~~G~~v~~~~A~  176 (319)
                      -+-+|     ..+...|...+++...
T Consensus       183 ~~l~l-----~~~~~~g~i~~~~~L~  203 (213)
T 3jsy_A          183 VGLNI-----LAVYEDGIIYTPDVLK  203 (213)
T ss_dssp             ESCEE-----EEEEETTEEECHHHHH
T ss_pred             EEEEE-----EEEEeCCceeCHHHcc
Confidence            98888     5667778888887544

>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=92.41  E-value=0.065  Score=37.67  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcC
Q 020952          208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAD  274 (319)
Q Consensus       208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~  274 (319)
                      .||.+++.           ++..++|+.+++.||.+|++++.+               .+|+++|++
T Consensus        16 ~~t~~~I~-----------~il~aaGveve~~~~~~~~~~L~g---------------k~i~elI~~   56 (58)
T 3a1y_A           16 EINEENLK-----------AVLQAAGVEPEEARIKALVAALEG---------------VNIDEVIEK   56 (58)
T ss_dssp             CCCHHHHH-----------HHHHHTTCCCCHHHHHHHHHHHSS---------------CCHHHHHHH
T ss_pred             CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHCC---------------CCHHHHHHc
Confidence            67888876           889999999999999999999988               599999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	99.7

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=2.8e-17  Score=141.47  Aligned_cols=97  Identities=16%  Similarity=0.270  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC----CcEEEEEehHHHHHHHHhchhhcCCccccccc
Q 020952            7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG----DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI   82 (319)
Q Consensus         7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~----~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~   82 (319)
                      +|++|+++|+++++.|++++.+++++|+|++++++++||+.||.    +++|+|.||||+|+|++++.       ++.+.
T Consensus         3 ~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~-------~~~l~   75 (177)
T d1zava1           3 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGYE   75 (177)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSCG
T ss_pred             CHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcCC-------cchhh
Confidence            59999999999999999999999999999999999999999984    58999999999999999874       88999


Q ss_pred             cccCCceEEEEe-cCChHHHHHHHHhhcc
Q 020952           83 PLLQGNVGLIFT-KGDLKEVKEEVAKYKV  110 (319)
Q Consensus        83 ~~l~G~~gliFT-~~dp~~v~k~l~~~k~  110 (319)
                      ++|.|+++++|+ .+||..+++++.+|..
T Consensus        76 ~~l~g~~a~~~~~~~d~~~~aK~l~~f~k  104 (177)
T d1zava1          76 EFLKGPTAVLYVTEGDPVEAVKIIYNFYK  104 (177)
T ss_dssp             GGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred             HHHhhccceeeeecCCchhhhhHHHHHhh
Confidence            999999999996 5799999999988854