Citrus Sinensis ID: 020996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIFVEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEKFVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQAFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVEVVQQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMALMPSPSSLPK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHcccEEEccccccccccccccccccccHccccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mdfcrnvavsgdqyqqdqvlspssippssssnlaladplddlfpahttevdVSLEWLSIFVEDClsssgiclpaselptknnaaattaapspkplqqqqqqkasttttpspppslekfvvpgkarskrkrasstakltqtstslsslttgcwttthnnhpadtqlfhsddppllQVQQAFWLADsqlifpkkettntntintnsnkkakandgdeeeeaKEEETEIGKEVEVVQQQQQqqgrrcshclsqrtpqwragplgpktlcnacgvryksgrllpeyrpaksptfvsylhSNSHKKVLEMRMalmpspsslpk
Flexible Loop (DISEMBL)
MDFCRNVAvsgdqyqqdqvlspSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIFVEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKasttttpspppslekfvvpgkarskrkrasstakltqtstslsslTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQAFWLADSQLIfpkkettntntintnsnkkakandgdeEEEAKEeeteigkeVEVVQQQQQQQGRRCSHCLSqrtpqwragplgpKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMAlmpspsslpk
Low Complexity Region (SEG)
MDFCRNVAVSGDQYQQDQVlspssippssssnlaladplddlfpaHTTEVDVSLEWLSIFVEDCLSSSGICLPASELPTKnnaaattaapspkplqqqqqqkasttttpspppslEKFVVPGKARSKRKRAsstakltqtstslsslttgcwtttHNNHPADTQLFHSDDPPLLQVQQAFWLADSQLIFPkkettntntintnsnkkakandgdeeeeakeeeteigkevevvqqqqqqqGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMALMPSPSSLPK
Disordered region (IsUnstruct)
**************************************LDDLFPAHTTEVDVSLEWLSIFVEDCLSSSGICLP**************************************************************************TTGCWTTTHNN****TQLFHSDDPPLLQVQQAFWLADSQLIFP****************************************************************WRAGPLGPKTLCNACGVRYKSGRLLPEYRPA**PTFVSYL************************
Disordered Region (DISOPRED)
***********************************ADPLDDLFPAHTTEVDVSLEWLSIFVEDC************************************************************************************************************************************************************************************SHCLSQRTPQWRAGPLGPKTLCNACGVR**********************************************
Disordered Region (DISEMBL)
******************************SNLALADPLDDLFPAHTTEVDVSLEWLSIFVEDCLSSSGICLPASELPTKN*******************************PSLEKFV****************************TTGCWTTTHNNHPADTQLFHSDDPPLLQVQQAFWLADSQLIFPKKETTNTNTINTNS*********************************************QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMALM********
Disordered Region (DISPRO)
***C**V**************************ALADPLDDLFPAHTTEVDVSLEWLSIFVEDCLSSS****************************************************************************************************************************************************************************GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSY*H***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIFVEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEKFVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQAFWLADSQLIFPKKETTNTNTINTNSxxxxxxxxxxxxxxxxxxxxxIGKEVEVVQQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMALMPSPSSLPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
O82632	308	GATA transcription factor	yes	no	0.544	0.561	0.343	9e-29
O65515	238	GATA transcription factor	no	no	0.229	0.306	0.691	1e-28
Q8LAU9	274	GATA transcription factor	no	no	0.207	0.240	0.772	4e-28
O49743	240	GATA transcription factor	no	no	0.248	0.329	0.683	8e-28
P69781	331	GATA transcription factor	no	no	0.204	0.196	0.769	3e-27
Q9SD38	312	GATA transcription factor	no	no	0.204	0.208	0.815	4e-27
O49741	264	GATA transcription factor	no	no	0.204	0.246	0.784	4e-27
Q9SV30	322	GATA transcription factor	no	no	0.220	0.217	0.742	1e-26
Q6DBP8	303	GATA transcription factor	no	no	0.204	0.214	0.707	9e-26
Q8L4M6	269	GATA transcription factor	no	no	0.204	0.241	0.753	1e-25

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 121/262 (46%), Gaps = 89/262 (33%)

Query: 54  LEWLSIFVEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPP 113
           LEWLS FVE+          A E   K +  +    P        Q   ++ T    P P
Sbjct: 80  LEWLSNFVEESF--------AGEDQDKLHLFSGLKNP--------QTTGSTLTHLIKPEP 123

Query: 114 SLE-KFV--------VPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQ 164
            L+ +F+        VP KARSKR R++++                 W +          
Sbjct: 124 ELDHQFIDIDESNVAVPAKARSKRSRSAAST----------------WAS---------- 157

Query: 165 LFHSDDPPLLQVQQAFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEET 224
                        +   LADS    PKK+            ++ K     E++ A + + 
Sbjct: 158 -------------RLLSLADSDETNPKKK-----------QRRVK-----EQDFAGDMDV 188

Query: 225 EIGKEVEVVQQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRP 284
           + G         +   GRRC HC +++TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRP
Sbjct: 189 DCG---------ESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRP 239

Query: 285 AKSPTFVSYLHSNSHKKVLEMR 306
           A SPTFV   HSNSH+KV+E+R
Sbjct: 240 ASSPTFVMARHSNSHRKVMELR 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 66/81 (81%)

Query: 236 QQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH 295
           QQQQ  R CSHC  Q+TPQWR GPLG KTLCNACGVR+KSGRLLPEYRPA SPTF + +H
Sbjct: 158 QQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIH 217

Query: 296 SNSHKKVLEMRMALMPSPSSL 316
           SNSH+KVLE+R+  +  P+ +
Sbjct: 218 SNSHRKVLELRLMKVADPARV 238

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 60/66 (90%)

Query: 241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHK 300
           GR+C HC +++TPQWRAGP GPKTLCNACGVRYKSGRL+PEYRPA SPTF + LHSNSH+
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHR 252

Query: 301 KVLEMR 306
           K++EMR
Sbjct: 253 KIVEMR 258

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 63/79 (79%)

Query: 228 KEVEVVQQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKS 287
           K+V   +       RRC+HC S++TPQWR GPLGPKTLCNACGVRYKSGRL+PEYRPA S
Sbjct: 144 KKVYNAESVTADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASS 203

Query: 288 PTFVSYLHSNSHKKVLEMR 306
           PTFV   HSNSH+KV+E+R
Sbjct: 204 PTFVLTQHSNSHRKVMELR 222

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 57/65 (87%)

Query: 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
           RRC HC + +TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+K
Sbjct: 219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRK 278

Query: 302 VLEMR 306
           V+E+R
Sbjct: 279 VMELR 283

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD38|GATA6_ARATH GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 56/65 (86%)

Query: 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
           R+C HC  Q+TPQWRAGPLG KTLCNACGVRYKSGRLLPEYRPA SPTF S LHSN H K
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query: 302 VLEMR 306
           V+EMR
Sbjct: 281 VIEMR 285

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 59/65 (90%)

Query: 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
           RRC+HC S++TPQWR GPLGPKTLCNACGVR+KSGRL+PEYRPA SPTFV   HSNSH+K
Sbjct: 179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query: 302 VLEMR 306
           V+E+R
Sbjct: 239 VMELR 243

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 56/70 (80%)

Query: 237 QQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHS 296
           +Q   R+C HC   +TPQWR GP+GPKTLCNACGVRYKSGRL PEYRPA SPTF   LHS
Sbjct: 224 EQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHS 283

Query: 297 NSHKKVLEMR 306
           NSHKKV EMR
Sbjct: 284 NSHKKVAEMR 293

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 58/65 (89%)

Query: 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
           R+C+HC + +TPQWR GP GPKTLCNACGVR++SGRL+PEYRPA SPTF+  +HSNSH+K
Sbjct: 220 RKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRK 279

Query: 302 VLEMR 306
           ++EMR
Sbjct: 280 IIEMR 284

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 56/65 (86%)

Query: 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
           RRCSHC +  TPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA SPTF + +HSN H+K
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRK 239

Query: 302 VLEMR 306
           VLE+R
Sbjct: 240 VLELR 244

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
224145955	294	predicted protein [Populus trichocarpa]	0.880	0.952	0.539	3e-76
224123808	295	predicted protein [Populus trichocarpa]	0.855	0.922	0.507	2e-72
297739745	265	unnamed protein product [Vitis vinifera]	0.811	0.973	0.551	9e-71
147860323	620	hypothetical protein VITISV_041707 [Viti	0.877	0.45	0.565	5e-69
225441643	299	PREDICTED: GATA transcription factor 9-l	0.883	0.939	0.536	1e-68
356571686	274	PREDICTED: GATA transcription factor 9-l	0.833	0.967	0.506	8e-64
356560969	281	PREDICTED: GATA transcription factor 9-l	0.836	0.946	0.501	3e-63
255635022	274	unknown [Glycine max]	0.817	0.948	0.504	6e-63
357508645	264	GATA transcription factor [Medicago trun	0.805	0.969	0.477	1e-59
356559547	279	PREDICTED: GATA transcription factor 9-l	0.820	0.935	0.460	1e-54

>gi|224145955|ref|XP_002325826.1| predicted protein [Populus trichocarpa] gi|222862701|gb|EEF00208.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 170/315 (53%), Positives = 199/315 (63%), Gaps = 35/315 (11%)

Query: 1   MDFCRNVAVSGD-QYQQDQVLSPSSIPPSSSSNLALAD--PLDDLFPAHTTEVDVSLEWL 57
           MDFCRNV VSG+  +QQ+ VL+  S PP S+   A A   PLDDLF A  TEVD S+EWL
Sbjct: 1   MDFCRNVTVSGEYHHQQEHVLA--SPPPCSTLTAAAASNSPLDDLFSAQNTEVDFSMEWL 58

Query: 58  SIFVEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEK 117
           S+FVEDCLSS+G CLPA   PT +     T    PKPLQQ+ Q + +       P SL+K
Sbjct: 59  SVFVEDCLSSTGNCLPA---PTSDAQKTNTEENPPKPLQQKPQDQEN-------PSSLKK 108

Query: 118 FVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQ 177
             VPGKARSKR+R       T    S + LT+ C+T    N           DPPLLQ  
Sbjct: 109 LAVPGKARSKRRR-------TTGDRSRNPLTSWCYTNQAFN-------LACSDPPLLQ-- 152

Query: 178 QAFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVE----VV 233
           Q  WLADS+LI P K+ ++    +    +K+ A    EEE  K  E E     +    + 
Sbjct: 153 QTHWLADSELITPIKDGSDNRGTDGEVQEKSGAEGDVEEELGKVLEVESSSSKDRTGSLE 212

Query: 234 QQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSY 293
               QQQ RRC+HCL+QRTPQWRAGP GPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSY
Sbjct: 213 SDNGQQQPRRCTHCLAQRTPQWRAGPSGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSY 272

Query: 294 LHSNSHKKVLEMRMA 308
           LHSNSHKKV+EMRMA
Sbjct: 273 LHSNSHKKVMEMRMA 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123808|ref|XP_002319169.1| predicted protein [Populus trichocarpa] gi|222857545|gb|EEE95092.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/327 (50%), Positives = 198/327 (60%), Gaps = 55/327 (16%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSS------SSNLALADPLDDLFPAHTTEVDVSL 54
           MDFCRNV VS + +QQ++VL+  S PP S      ++  A   PLDD F A  TEVD S 
Sbjct: 1   MDFCRNVTVSTEYHQQEKVLA--SPPPCSKLGAAAAALTATTSPLDDPFSAQNTEVDFSS 58

Query: 55  EWLSIFVEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPS 114
           EWLS+FVEDCLSS+G CLPA   PT       T    PK  Q++ Q +         P S
Sbjct: 59  EWLSVFVEDCLSSTGNCLPA---PTVEAQKPNTEENPPKNWQRKPQDQED-------PSS 108

Query: 115 LEKFVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLL 174
           L+K V+PGK+RSKR+R            + + LT+ C+T    N+        S DPPLL
Sbjct: 109 LKKLVIPGKSRSKRRRLPG-------DKTRNPLTSWCYTNQAFNN------LTSSDPPLL 155

Query: 175 QVQQAFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVEVV- 233
           Q  Q +WLADS+LI P KE +N   ++         N+  EE      + +IGK V VV 
Sbjct: 156 Q--QTYWLADSELIMPIKEDSNNTDMD---------NEVQEESGVGVHDEDIGKVVAVVG 204

Query: 234 ------------QQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPE 281
                           QQQ RRC+HCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPE
Sbjct: 205 SNGSKDSLGVLESNNGQQQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPE 264

Query: 282 YRPAKSPTFVSYLHSNSHKKVLEMRMA 308
           YRPAKSPTFVSYLHSNSHKKV+EMRMA
Sbjct: 265 YRPAKSPTFVSYLHSNSHKKVMEMRMA 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739745|emb|CBI29927.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (697), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 177/321 (55%), Positives = 207/321 (64%), Gaps = 63/321 (19%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MDF R V+VSG+ Y Q+QV  PS++   S      A  LDDLF    TEVDVSLEWLSIF
Sbjct: 1   MDFYREVSVSGE-YPQEQV--PSTV--CSKLGGLSAGSLDDLFSTQNTEVDVSLEWLSIF 55

Query: 61  VEDCLSSSGICLPASELPTKNNAAATTAAPSP-KPLQQQQ--QQKASTTTTPSPPPSLEK 117
           VEDCLSS+G CLPA +     N A+ +A P P KPLQ  Q  QQK      PS P  L+ 
Sbjct: 56  VEDCLSSTGNCLPAPK-----NVASDSATPKPSKPLQSMQKPQQK------PSSP--LQN 102

Query: 118 FVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQL-FHSDDPPLLQV 176
            V+PGKARSKRKRA      T  +TS S+     W   H+ +P +  L   S DPPLLQ 
Sbjct: 103 LVIPGKARSKRKRA------TTITTSFSN-----WV--HHLNPENQNLHITSSDPPLLQ- 148

Query: 177 QQAFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVEVVQQQ 236
            QA+WLADS+LI PKKE +++N  N N++              KEEE           + 
Sbjct: 149 -QAYWLADSELIVPKKEESSSNNNNNNNSM------------VKEEE-----------EG 184

Query: 237 QQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHS 296
              Q RRC+HCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSY HS
Sbjct: 185 SNGQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYKHS 244

Query: 297 NSHKKVLEMRMALMPSPSSLP 317
           NSHKKV+EMRMA++   SS+P
Sbjct: 245 NSHKKVMEMRMAVL---SSIP 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860323|emb|CAN83570.1| hypothetical protein VITISV_041707 [Vitis vinifera]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 185/327 (56%), Positives = 223/327 (68%), Gaps = 48/327 (14%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MDF R V+VSG+ Y Q+QV  PS++  S    L+ A  LDDLF    TEVDVSLEWLSIF
Sbjct: 322 MDFYREVSVSGE-YPQEQV--PSTVC-SKLGGLS-AGSLDDLFSTQNTEVDVSLEWLSIF 376

Query: 61  VEDCLSSSGICLPASELPTKNNAAATTAAPSP-KPLQQQQ--QQKASTTTTPSPPPSLEK 117
           VEDCLSS+G CLPA +     N A+ +A P P KPLQ  Q  QQK      PS P  L+ 
Sbjct: 377 VEDCLSSTGNCLPAPK-----NVASDSATPKPSKPLQSMQKPQQK------PSSP--LQN 423

Query: 118 FVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQL-FHSDDPPLLQV 176
            V+PGKARSKRKRA      T  +TS S+     W   H+ +P +  L   S DPPLLQ 
Sbjct: 424 LVIPGKARSKRKRA------TTITTSFSN-----WV--HHLNPENQNLHITSSDPPLLQ- 469

Query: 177 QQAFWLADSQLIFPKKETTNTNTINTNSN--KKAKANDGDEEEEAKEEETEIGKEVEVVQ 234
            QA+WLADS+LI PKKE +++N  N N++  K+ +  + +EEEE +EEET    EVEV +
Sbjct: 470 -QAYWLADSELIVPKKEESSSNNNNNNNSMVKEEEEVEEEEEEEEEEEETREEVEVEVEK 528

Query: 235 QQQQQQG---------RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA 285
             +++ G         RRC+HCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA
Sbjct: 529 GNKERWGNLEGSNGQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA 588

Query: 286 KSPTFVSYLHSNSHKKVLEMRMALMPS 312
           KSPTFVSY HSNSHKKV+EMRMA++ S
Sbjct: 589 KSPTFVSYKHSNSHKKVMEMRMAVLSS 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441643|ref|XP_002282225.1| PREDICTED: GATA transcription factor 9-like [Vitis vinifera]

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 178/332 (53%), Positives = 215/332 (64%), Gaps = 51/332 (15%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MDF R V+VSG+ Y Q+QV  PS++   S      A  LDDLF    TEVDVSLEWLSIF
Sbjct: 1   MDFYREVSVSGE-YPQEQV--PSTV--CSKLGGLSAGSLDDLFSTQNTEVDVSLEWLSIF 55

Query: 61  VEDCLSSSGICLPASELPTKNNAAATTAAPSP-KPLQQQQ--QQKASTTTTPSPPPSLEK 117
           VEDCLSS+G CLPA +     N A+ +A P P KPLQ  Q  QQK      PS P  L+ 
Sbjct: 56  VEDCLSSTGNCLPAPK-----NVASDSATPKPSKPLQSMQKPQQK------PSSP--LQN 102

Query: 118 FVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQL-FHSDDPPLLQV 176
            V+PGKARSKRKRA      T  +TS S+     W   H+ +P +  L   S DPPLLQ 
Sbjct: 103 LVIPGKARSKRKRA------TTITTSFSN-----WV--HHLNPENQNLHITSSDPPLLQ- 148

Query: 177 QQAFWLADSQLIFPKKETTNTNTINTNSN-----------KKAKANDGDEEEEAKEEETE 225
            QA+WLADS+LI PKKE +++N  N N++           ++ +  + +  EE + E  +
Sbjct: 149 -QAYWLADSELIVPKKEESSSNNNNNNNSMVKEEEEVEEEEEEEEEEEETREEVEVEVEK 207

Query: 226 IGKEVEVVQQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA 285
             KE     +    Q RRC+HCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA
Sbjct: 208 GNKERWGNLEGSNGQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA 267

Query: 286 KSPTFVSYLHSNSHKKVLEMRMALMPSPSSLP 317
           KSPTFVSY HSNSHKKV+EMRMA++   SS+P
Sbjct: 268 KSPTFVSYKHSNSHKKVMEMRMAVL---SSIP 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571686|ref|XP_003554005.1| PREDICTED: GATA transcription factor 9-like [Glycine max]

 Score =  249 bits (637), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 162/320 (50%), Positives = 192/320 (60%), Gaps = 55/320 (17%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MD C+NV+VSG+  QQ QV +PS     SSS       LDDLF A  TEVDV LEWLS F
Sbjct: 3   MDMCQNVSVSGE-CQQVQVFAPSC----SSS-------LDDLFSAQNTEVDVELEWLSEF 50

Query: 61  VEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEKFVV 120
           VEDC SS   C+    +P      +T+   S   L++ QQQ  S          L+ F V
Sbjct: 51  VEDCFSSPPSCV---LVPIGVKTTSTSTNLSSGTLKRPQQQNESP---------LQNFAV 98

Query: 121 PGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQAF 180
           PGKARSKRKR      L+   T+   L    W+  H+ +P +  L    DPPLL+  QA+
Sbjct: 99  PGKARSKRKR------LSAPRTNKDPLNI--WS--HHLNPQNESL--CSDPPLLK--QAY 144

Query: 181 WLADSQLIFPKKETTNTNTINTNSNKK-----AKANDGDEEEEAKEEETEIGKEVEVVQQ 235
           WLADS+LI PK +      + T  ++K     +K + GD E E            E    
Sbjct: 145 WLADSELIMPKPKDEEQEEVVTKEDEKVINVMSKESFGDSELE------------EGSNG 192

Query: 236 QQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH 295
           QQ    RRCSHCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH
Sbjct: 193 QQPMPTRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH 252

Query: 296 SNSHKKVLEMRMALMPSPSS 315
           SNSHKKV+EMRMA+  + SS
Sbjct: 253 SNSHKKVMEMRMAVFSTISS 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560969|ref|XP_003548758.1| PREDICTED: GATA transcription factor 9-like [Glycine max]

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 158/315 (50%), Positives = 192/315 (60%), Gaps = 49/315 (15%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MD C+NV+VSG+  QQ QV +PS     SSS       LDDLF A  TEVDV LEWLS F
Sbjct: 3   MDMCQNVSVSGE-CQQVQVFAPSC----SSS-------LDDLFSAQNTEVDVELEWLSEF 50

Query: 61  VEDCLSS--SGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEKF 118
           VEDC SS  S + +P     T   + +T+  PS K  QQQ +            P L+ F
Sbjct: 51  VEDCFSSPPSCVLVPVGVKTTSTKSTSTSINPSLKRPQQQNE------------PPLQNF 98

Query: 119 VVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQ 178
            VPGKARSKRKR      L+   T+   L+   W+  H+ +P +  L    DPPLL+  Q
Sbjct: 99  AVPGKARSKRKR------LSAPRTNKDPLSI--WS--HHLNPQNEAL--CSDPPLLK--Q 144

Query: 179 AFWLADSQLIFPK----KETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVEVVQ 234
           A+WLADS+LI PK    +E      I    +++    +  +E    + E + G       
Sbjct: 145 AYWLADSELIMPKPKDKEEQQEEVVIMAKEDEEKVIINVSKEISFGDSELDEGS-----N 199

Query: 235 QQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYL 294
            QQQ   RRC+HCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYL
Sbjct: 200 GQQQPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYL 259

Query: 295 HSNSHKKVLEMRMAL 309
           HSNSHKKV+EMRM++
Sbjct: 260 HSNSHKKVMEMRMSV 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635022|gb|ACU17869.1| unknown [Glycine max]

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 159/315 (50%), Positives = 188/315 (59%), Gaps = 55/315 (17%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MD C+NV+VSG+  QQ QV +PS     SSS       LDDLF A  TEVDV LEWLS F
Sbjct: 3   MDMCQNVSVSGE-CQQVQVFAPSC----SSS-------LDDLFSAQNTEVDVELEWLSEF 50

Query: 61  VEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEKFVV 120
           VEDC SS   C+    +P      +T+   S   L++ QQQ  S          L+ F V
Sbjct: 51  VEDCFSSPPSCV---LVPIGVKTTSTSTNLSSGTLKRPQQQNESP---------LQNFAV 98

Query: 121 PGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQAF 180
           PGKARSKRKR      L+   T+   L    W+  H+ +P +  L    DPPLL+  QA+
Sbjct: 99  PGKARSKRKR------LSAPRTNKDPLNI--WS--HHLNPQNESL--CSDPPLLK--QAY 144

Query: 181 WLADSQLIFPKKETTNTNTINTNSNKK-----AKANDGDEEEEAKEEETEIGKEVEVVQQ 235
           WLADS+LI PK +      + T  ++K     +K + GD E E            E    
Sbjct: 145 WLADSELIMPKPKDEEQEEVVTKEDEKVINVMSKESFGDSELE------------EGSNG 192

Query: 236 QQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH 295
           QQ    RRCSHCL+QR PQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH
Sbjct: 193 QQPMPTRRCSHCLAQRAPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLH 252

Query: 296 SNSHKKVLEMRMALM 310
           SNSHKKV+EMRMA+ 
Sbjct: 253 SNSHKKVMEMRMAVF 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508645|ref|XP_003624611.1| GATA transcription factor [Medicago truncatula] gi|124365580|gb|ABN09814.1| Zinc finger, GATA-type [Medicago truncatula] gi|355499626|gb|AES80829.1| GATA transcription factor [Medicago truncatula]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/314 (47%), Positives = 187/314 (59%), Gaps = 58/314 (18%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MD C+NV VS +  +Q++VL+PS       SNL+ +  LDDLF A   EVDV +EWLS+F
Sbjct: 1   MDVCQNVQVSSE-CKQEKVLNPSC------SNLSSS--LDDLFSAQNMEVDVGMEWLSVF 51

Query: 61  VEDCLSS--SGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPSLEKF 118
           VEDC SS  S + LP+S    +N  +  ++ PS    + +Q+Q  S             F
Sbjct: 52  VEDCFSSPQSCVLLPSS---VQNTTSTVSSKPSNTVKKPKQEQNESP------------F 96

Query: 119 VVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLLQVQQ 178
            VPGKARSKRKR S+  +     + LS+            +P +  L    DPPLL  +Q
Sbjct: 97  AVPGKARSKRKRLSAPRRPKDPLSILSNTL----------NPQNESL--CSDPPLL--KQ 142

Query: 179 AFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVEVVQQQQQ 238
           A+WLADS+L+ PK E   T                 ++ E  E+E     E  V   Q  
Sbjct: 143 AYWLADSELMVPKGEKEVT-----------------KDCEVVEKE-RFDFEGFVNNGQNP 184

Query: 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNS 298
              RRC+HCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVS+LHSNS
Sbjct: 185 IPTRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSFLHSNS 244

Query: 299 HKKVLEMRMALMPS 312
           HKKV+EMRM ++ S
Sbjct: 245 HKKVMEMRMNVVSS 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559547|ref|XP_003548060.1| PREDICTED: GATA transcription factor 9-like [Glycine max]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/315 (46%), Positives = 171/315 (54%), Gaps = 54/315 (17%)

Query: 1   MDFCRNVAVSGDQYQQDQVLSPSSIPPSSSSNLALADPLDDLFPAHTTEVDVSLEWLSIF 60
           MD CRN++VS  + QQ+       +P            LDDLF    TEVD  +EWLS+F
Sbjct: 3   MDVCRNISVSSSECQQE-------LPT-----------LDDLFCHQNTEVDFGMEWLSVF 44

Query: 61  VEDCLSSSGICLPASELPTKNNAAATTAAPSPKPLQQQQQQKASTTTTPSPPPS------ 114
           VEDC SS   CL    LP           PS   +Q        ++ T  P P       
Sbjct: 45  VEDCFSSRPSCL----LP-----------PSGGGVQTTSTSTKPSSGTIMPRPQQSHHCP 89

Query: 115 LEKFVVPGKARSKRKRASSTAKLTQTSTSLSSLTTGCWTTTHNNHPADTQLFHSDDPPLL 174
           L+ F VPGKARSKRKR S+      T             +T + H +      S DPPLL
Sbjct: 90  LQNFAVPGKARSKRKRLSAPRTTKHT------------LSTWSQHFSSQNDGVSSDPPLL 137

Query: 175 QVQQAFWLADSQLIFPKKETTNTNTINTNSNKKAKANDGDEEEEAKEEETEIGKEVEVVQ 234
           +  QA+WLADS+LI PKK+            KK K  D  +++E  E             
Sbjct: 138 K--QAYWLADSELIVPKKKDVEQEEGVVVVVKKEKLGDYYDDDEGDEVNNNN-TNNNNND 194

Query: 235 QQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYL 294
             Q    RRC+HCL+QRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYL
Sbjct: 195 NVQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYL 254

Query: 295 HSNSHKKVLEMRMAL 309
           HSNSHKKV+EMRM +
Sbjct: 255 HSNSHKKVMEMRMGV 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.207	0.214	0.772	8.8e-34
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.223	0.209	0.760	8.8e-34
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.204	0.246	0.784	1.8e-33
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.204	0.270	0.8	3.7e-33
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.229	0.306	0.712	3.7e-33
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.204	0.196	0.769	7.6e-33
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.207	0.240	0.772	1.3e-30
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.204	0.208	0.815	5.9e-29
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.204	0.241	0.753	2.5e-28
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.204	0.201	0.784	1.1e-25

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
 Identities = 51/66 (77%), Positives = 59/66 (89%)

Query:   241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHK 300
             GRRC HC +++TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+
Sbjct:   196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHR 255

Query:   301 KVLEMR 306
             KV+E+R
Sbjct:   256 KVMELR 261

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 8.8e-34, Sum P(3) = 8.8e-34
 Identities = 54/71 (76%), Positives = 60/71 (84%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             R+CSHC  Q+TPQWRAGP+G KTLCNACGVRYKSGRLLPEYRPA SPTF S LHSN H+K
Sbjct:   249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query:   302 VLEMRMALMPS 312
             V+EMR    P+
Sbjct:   309 VIEMRRKKEPT 319

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
 Identities = 51/65 (78%), Positives = 59/65 (90%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             RRC+HC S++TPQWR GPLGPKTLCNACGVR+KSGRL+PEYRPA SPTFV   HSNSH+K
Sbjct:   179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238

Query:   302 VLEMR 306
             V+E+R
Sbjct:   239 VMELR 243

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
 Identities = 52/65 (80%), Positives = 59/65 (90%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             RRC+HC S++TPQWR GPLGPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+K
Sbjct:   158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query:   302 VLEMR 306
             V+E+R
Sbjct:   218 VMELR 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
 Identities = 52/73 (71%), Positives = 61/73 (83%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             R CSHC  Q+TPQWR GPLG KTLCNACGVR+KSGRLLPEYRPA SPTF + +HSNSH+K
Sbjct:   164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRK 223

Query:   302 VLEMRMALMPSPS 314
             VLE+R+  +  P+
Sbjct:   224 VLELRLMKVADPA 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
 Identities = 50/65 (76%), Positives = 57/65 (87%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             RRC HC + +TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA SPTFV   HSNSH+K
Sbjct:   219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRK 278

Query:   302 VLEMR 306
             V+E+R
Sbjct:   279 VMELR 283

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
 Identities = 51/66 (77%), Positives = 60/66 (90%)

Query:   241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHK 300
             GR+C HC +++TPQWRAGP GPKTLCNACGVRYKSGRL+PEYRPA SPTF + LHSNSH+
Sbjct:   193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHR 252

Query:   301 KVLEMR 306
             K++EMR
Sbjct:   253 KIVEMR 258

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 53/65 (81%), Positives = 56/65 (86%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             R+C HC  Q+TPQWRAGPLG KTLCNACGVRYKSGRLLPEYRPA SPTF S LHSN H K
Sbjct:   221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query:   302 VLEMR 306
             V+EMR
Sbjct:   281 VIEMR 285

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 49/65 (75%), Positives = 56/65 (86%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             RRCSHC +  TPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA SPTF + +HSN H+K
Sbjct:   180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRK 239

Query:   302 VLEMR 306
             VLE+R
Sbjct:   240 VLELR 244

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 51/65 (78%), Positives = 54/65 (83%)

Query:   242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKK 301
             R+C HC   +TPQWR GP+GPKTLCNACGVRYKSGRL PEYRPA SPTF   LHSNSHKK
Sbjct:   229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query:   302 VLEMR 306
             V EMR
Sbjct:   289 VAEMR 293

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00190377 hypothetical protein (294 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	4e-14
pfam00320	36	pfam00320, GATA, GATA zinc finger	3e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-11

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 65.5 bits (160), Expect = 4e-14
 Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVS 292
            GR CS+C +  TP WR GP G KTLCNACG+ YK    L   RP        
Sbjct: 2   SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDGI 52

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 244 CSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL 279
           CS+C + +TP WR GP G +TLCNACG+ Y+   L 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 243 RCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTF 290
            CS+C +  TP WR GP G  TLCNACG+ +K        RP      
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKK 45

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.51
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.47
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.41
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.06
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.87
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	89.24

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.51  E-value=1.4e-14  Score=106.77  Aligned_cols=44  Identities=45%  Similarity=0.927  Sum_probs=38.5

Q ss_pred             ccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCCCCCCCC
Q 020996          243 RCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPT  289 (318)
Q Consensus       243 ~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yrPa~sP~  289 (318)
                      .|+||++++||+||+||.|..+|||||||||++++   ..||...+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~---~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC---CCCCcccCc
Confidence            59999999999999999998999999999999977   456665554

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.47  E-value=2.2e-14  Score=104.64  Aligned_cols=47  Identities=53%  Similarity=0.992  Sum_probs=39.7

Q ss_pred             CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCCCCCCC
Q 020996          240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSP  288 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yrPa~sP  288 (318)
                      ..+.|.||++++||+||+||.|..+|||||||+|++++.+  +||....
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~--~rp~~~~   48 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL--KRPLSLK   48 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC--CCccccc
Confidence            4578999999999999999999889999999999997654  3444433

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.41  E-value=2.8e-14  Score=97.26  Aligned_cols=35  Identities=57%  Similarity=1.150  Sum_probs=28.3

Q ss_pred             cCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996          244 CSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL  278 (318)
Q Consensus       244 Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl  278 (318)
                      |.||++++||+||+||.|..+||||||++|++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988899999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.06  E-value=1.4e-10  Score=96.80  Aligned_cols=69  Identities=61%  Similarity=1.103  Sum_probs=57.4

Q ss_pred             CcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhC---CCCCCCCCCCCCC--------------cccccccc------
Q 020996          241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSG---RLLPEYRPAKSPT--------------FVSYLHSN------  297 (318)
Q Consensus       241 ~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkg---rllP~yrPa~sP~--------------f~~~~HSn------  297 (318)
                      ...|.+|+++.||+||+|+.|...+|||||++|+++   +.++.++....+.              +....|.+      
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRNVSPKGSGAVKGRTFTKSLHSNSAQLLL  278 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccccCCCccccccCCCCCcccccchhhhhh
Confidence            588999999999999999999999999999999998   6778888776666              55566666      


Q ss_pred             -----------cchHHHHHHHhc
Q 020996          298 -----------SHKKVLEMRMAL  309 (318)
Q Consensus       298 -----------shkkV~~~r~~~  309 (318)
                                 .+.+++++++.-
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~r~~  301 (340)
T KOG1601|consen  279 APSKSEPPLLSSHQRVAEVRRYR  301 (340)
T ss_pred             hhcccCccccccchHHHHHhhcc
Confidence                       677777776643

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.87  E-value=5.5e-06  Score=84.11  Aligned_cols=53  Identities=30%  Similarity=0.497  Sum_probs=42.8

Q ss_pred             cccCCCCCCCCCCcCCCCCC----ChhhhhhhhhhhhhCCCCCCCCCCCCCCccccccc
Q 020996          242 RRCSHCLSQRTPQWRAGPLG----PKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHS  296 (318)
Q Consensus       242 r~Cs~Cgtt~TP~WRrGP~G----~ktLCNACGLrykkgrllP~yrPa~sP~f~~~~HS  296 (318)
                      ..|.+|.++.||+|||+..+    .-+|||||||+|+-++...+  |...+..+...|.
T Consensus       159 ~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~--P~t~ks~~~ks~~  215 (498)
T COG5641         159 HVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRA--PISLKSDSIKSRS  215 (498)
T ss_pred             chhccccccCCccccccccccccCCccccccccccccccCCcCC--Ccccccccccccc
Confidence            38999999999999999993    38999999999997665432  7777766666555

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=89.24  E-value=0.47  Score=49.57  Aligned_cols=36  Identities=31%  Similarity=0.754  Sum_probs=30.6

Q ss_pred             CCcccCCCCCCCCCCc--CCCCCCChhhhhhhhhhhhh
Q 020996          240 QGRRCSHCLSQRTPQW--RAGPLGPKTLCNACGVRYKS  275 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~W--RrGP~G~ktLCNACGLrykk  275 (318)
                      .++.|.+|+++..-+|  .-+|.-...||-.|-++|+|
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKK  422 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKK  422 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHH
Confidence            3789999999999999  44555556799999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	1e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	1e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-07
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 236 QQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAK 286
              ++  +CS+C    T +WR         CNAC +  +      + RP  
Sbjct: 3   HMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274
           + R C +C +  TP WR    G   LCNACG+ +K
Sbjct: 3   EARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274
             C++C +Q TP WR  P G + LCNACG+  K
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 233 VQQQQQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274
           ++  +Q     C++C +Q TP WR  P G + LCNACG+  K
Sbjct: 1   MKNGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 41

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 237 QQQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274
            ++ G  C++C +  T  WR    G   +CNACG+ YK
Sbjct: 3   ARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.57
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.57
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.53
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.49
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.43
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.26
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.16

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.57  E-value=5.5e-16  Score=109.38  Aligned_cols=37  Identities=43%  Similarity=0.995  Sum_probs=34.4

Q ss_pred             cccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC
Q 020996          242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL  279 (318)
Q Consensus       242 r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll  279 (318)
                      +.|.+|++++||+||+||+|. +|||||||+|++++.+
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            679999999999999999996 9999999999998764

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.57  E-value=1.1e-15  Score=109.33  Aligned_cols=39  Identities=38%  Similarity=0.762  Sum_probs=35.9

Q ss_pred             CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC
Q 020996          240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL  279 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll  279 (318)
                      +...|.+|++++||+||+||+|. +|||||||||++++.+
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence            56889999999999999999996 9999999999998764

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.53  E-value=3e-15  Score=113.16  Aligned_cols=44  Identities=36%  Similarity=0.859  Sum_probs=38.4

Q ss_pred             CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCCCCC
Q 020996          239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAK  286 (318)
Q Consensus       239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yrPa~  286 (318)
                      .....|.||++++||+||+||+|. +|||||||+|++++.   +||..
T Consensus         5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~   48 (63)
T 3dfx_A            5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLT   48 (63)
T ss_dssp             CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGG
T ss_pred             CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcC
Confidence            356889999999999999999996 999999999999876   45554

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.49  E-value=4.3e-15  Score=113.01  Aligned_cols=39  Identities=41%  Similarity=0.912  Sum_probs=36.0

Q ss_pred             CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996          239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL  278 (318)
Q Consensus       239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl  278 (318)
                      .....|.||++++||+||+||+|. +|||||||+|++++.
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence            467999999999999999999996 999999999998765

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.43  E-value=3.2e-14  Score=109.70  Aligned_cols=44  Identities=27%  Similarity=0.486  Sum_probs=35.0

Q ss_pred             CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCCCC
Q 020996          239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA  285 (318)
Q Consensus       239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yrPa  285 (318)
                      .....|.||++++||+||+|+.+..+|||||||+|++++.   +||.
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~---~RP~   49 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK---TRPV   49 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS---CCCT
T ss_pred             CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC---CCCc
Confidence            4568999999999999999554444999999999998764   4555

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.26  E-value=1.1e-12  Score=108.04  Aligned_cols=39  Identities=36%  Similarity=0.858  Sum_probs=35.9

Q ss_pred             CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC
Q 020996          240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL  279 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll  279 (318)
                      ....|+||++++||+||+||+| .+|||||||||++++..
T Consensus        58 ~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~   96 (115)
T 4hc9_A           58 AGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN   96 (115)
T ss_dssp             TTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred             ccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence            4589999999999999999999 89999999999987663

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.16  E-value=9.7e-12  Score=102.49  Aligned_cols=38  Identities=42%  Similarity=0.850  Sum_probs=33.4

Q ss_pred             CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996          240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL  278 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl  278 (318)
                      ..+.|.||+++.||+||+|++| .+|||||||+|+.++.
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~   41 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQ   41 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccc
Confidence            4689999999999999999999 7999999999987554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-13
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	2e-08
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	5e-08

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (148), Expect = 3e-13
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274
           + R C +C +  TP WR    G   LCNACG+ +K
Sbjct: 1   EARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 244 CSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA 285
           C++C +Q TP WR  P G + LCNACG+  K   L    RP 
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPL 40

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 238 QQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSN 297
           ++ G  CS+C +  T  WR  P+G   +CNACG+ YK  ++    RP             
Sbjct: 1   KRAGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV---NRPL-----------T 45

Query: 298 SHKKVLEMRMALMPSPSS 315
             K  ++ R   + S   
Sbjct: 46  MRKDGIQTRNRKVSSKGK 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.63
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.6
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.5

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.9e-17  Score=112.97  Aligned_cols=38  Identities=39%  Similarity=0.823  Sum_probs=34.4

Q ss_pred             CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996          240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL  278 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl  278 (318)
                      +.+.|.||++++||+||+||+| ++|||||||+|+.++.
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             CcCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            3578999999999999999999 6899999999998753

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.60  E-value=1.1e-16  Score=111.56  Aligned_cols=35  Identities=46%  Similarity=1.052  Sum_probs=32.5

Q ss_pred             ccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996          243 RCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL  278 (318)
Q Consensus       243 ~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl  278 (318)
                      .|.||++++||+||+||+| ++|||||||||++++.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~   36 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV   36 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCC
Confidence            5999999999999999999 7999999999997654

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=1.7e-15  Score=113.79  Aligned_cols=38  Identities=42%  Similarity=1.018  Sum_probs=34.7

Q ss_pred             CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996          240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL  278 (318)
Q Consensus       240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl  278 (318)
                      .+..|.||++++||+||+||+| .+|||||||||++++.
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            4578999999999999999999 7999999999998665