Citrus Sinensis ID: 021011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHccccccEEEEEEEccccccccccccHHHHcccccccccccccccEEEccccccccccccccccccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccccEEEcccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccEEEEEEEEEEEccccccccccccEEEccccEcccccccccEEEEccccccccHHHHEEccccccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MVETGEAVFRFKKVVSLLNNGSGHARVRKlrklpnpvnqsiflenphhkteipsknlqflqssfhdnpvqemgslakssltlgnpslelisngkqhlqlgqqtpstsahYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFrksnsgvslnfdsssctptmssnrSFISSLsmdgsvanldgsafhligaprssdqssqqhkrkcsgrgedgsvkcgsngrchcskkrkHRVKKSIkvpaisnkladippddyswrkygqkpikgsphprgyykcssmrgcparkhvercleepTMLIVTyegehnhprlpsqsatt
Flexible Loop (DISEMBL)
mvetgeavFRFKKVVSllnngsgharvrklrklpnpvNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGaprssdqssqqhKRKCsgrgedgsvkcgsngrchcskkrkhrvkksikvpaisnkladippddySWRKYgqkpikgsphprgyykCSSMRGCPARKHVERCLEEPTMLIVTyegehnhprlpsqsatt
Low Complexity Region (SEG)
MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAhyhflqqqqlqqrllhqqqqqqqhhmklqAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRchcskkrkhrvkksikvPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT
Disordered region (IsUnstruct)
******AVFRFKKVVSLLNNG****************************************************************************************************************************************************************************************************************************************YSWRKY************GYYKCSSMRGCPARKHVERCLEEPTMLIVTY****************
Disordered Region (DISOPRED)
***TGEAVFRFKKVVSL*************************************************************************************************************************************************************************************************************************************ADIPPDDYSWRKYGQK*IKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHN***********
Disordered Region (DISEMBL)
MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQ*******************LQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGA********************************************SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH**********
Disordered Region (DISPRO)
****GEAVFRFKKVVSLLNNGSGHARVRKLRK**************************************************************************SAHYHFLQQQQLQQRLLHQQQQQQQHHMKL**********************************************************************************************HRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGE*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
O04336	380	Probable WRKY transcripti	yes	no	0.977	0.818	0.569	3e-92
Q9SR07	330	Probable WRKY transcripti	no	no	0.877	0.845	0.516	4e-74
Q93WU6	330	Probable WRKY transcripti	no	no	0.915	0.881	0.504	3e-72
Q32SG4	397	Protein WRKY1 OS=Zea mays	N/A	no	0.962	0.770	0.435	2e-60
Q9SV15	325	Probable WRKY transcripti	no	no	0.757	0.741	0.397	3e-45
Q9SJA8	321	Probable WRKY transcripti	no	no	0.427	0.423	0.557	2e-43
O22176	317	Probable WRKY transcripti	no	no	0.345	0.347	0.669	5e-42
Q9STX0	353	Probable WRKY transcripti	no	no	0.462	0.416	0.542	7e-42
O64747	427	Probable WRKY transcripti	no	no	0.311	0.231	0.504	2e-23
Q9LP56	259	Probable WRKY transcripti	no	no	0.210	0.258	0.661	4e-23

>sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1

 Score =  338 bits (867), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 241/346 (69%), Gaps = 35/346 (10%)

Query: 3   ETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKT-EIPSKNLQ--- 58
           ET EAV RFK+V SLL++  GHAR R+ +KL + V+QS+ L+    +T E+PS + Q   
Sbjct: 40  ETREAVIRFKRVGSLLSSSVGHARFRRAKKLQSHVSQSLLLDPCQQRTTEVPSSSSQKTP 99

Query: 59  FLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQ-HLQLGQQTPSTSAHYHFL---- 113
            L+S F +  +++       SLTLG  S  L SN K   LQL QQT   S +        
Sbjct: 100 VLRSGFQELSLRQ----PSDSLTLGTRSFSLNSNAKAPLLQLNQQTMPPSNYPTLFPVQQ 155

Query: 114 -------------------QQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFD 154
                              QQQQ  +RL      QQQ   K QAE M RK N G+SL+FD
Sbjct: 156 QQQQQQQQQQQEQQQQQQQQQQQFHERLQAHHLHQQQQLQKHQAELMLRKCNGGISLSFD 215

Query: 155 SSSCTPTMSSNRSFISSLSMDGSVANLDG-SAFHLIGAPRSSDQSSQQHKRKCSGRGED- 212
           +SSCTPTMSS RSF+SSLS+DGSVAN++G ++FH  G P S+DQ+S   KRKC  +G++ 
Sbjct: 216 NSSCTPTMSSTRSFVSSLSIDGSVANIEGKNSFHF-GVPSSTDQNSLHSKRKCPLKGDEH 274

Query: 213 GSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRG 272
           GS+KCGS+ RCHC+KKRKHRV++SI+VPAISNK+ADIPPDDYSWRKYGQKPIKGSP+PRG
Sbjct: 275 GSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYSWRKYGQKPIKGSPYPRG 334

Query: 273 YYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSATT 318
           YYKCSSMRGCPARKHVERCLE+P MLIVTYE EHNHP+LPSQ+ TT
Sbjct: 335 YYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKLPSQAITT 380

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR07|WRK39_ARATH Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=2 SV=1

 Score =  278 bits (711), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 173/335 (51%), Positives = 211/335 (62%), Gaps = 56/335 (16%)

Query: 2   VETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENP---------HHKTEI 52
           VETGE V +FK+V SLL  G GH + R   K  +   Q IFLE+P          +   +
Sbjct: 34  VETGEVVSKFKRVASLLTRGLGHGKFRSTNKFRSSFPQHIFLESPICCGNDLSGDYTQVL 93

Query: 53  PSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLEL---ISNGKQHLQLGQQTPSTSAH 109
             + LQ + +S   N ++    L       G+PSL L   +   K  L+L  + P   A 
Sbjct: 94  APEPLQMVPASAVYNEMEPKHQL-------GHPSLMLSHKMCVDKSFLEL--KPPPFRAP 144

Query: 110 YHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSS--SC-TPTMSS-N 165
           Y          +L+H  QQ             + +SNSGV+L FD S  SC TP++S+ +
Sbjct: 145 Y----------QLIHNHQQIA-----------YSRSNSGVNLKFDGSGSSCYTPSVSNGS 183

Query: 166 RSFISSLSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRK-CSGRGEDGSVKCGSNGRCH 224
           RSF+SSLSMD SV + D ++FHL G  R SDQ   QH RK CSG     S+KCGS  +CH
Sbjct: 184 RSFVSSLSMDASVTDYDRNSFHLTGLSRGSDQ---QHTRKMCSG-----SLKCGSRSKCH 235

Query: 225 CSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPA 284
           CSKKRK RVK+SIKVPAISNK+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPA
Sbjct: 236 CSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPA 295

Query: 285 RKHVERCLEEPTMLIVTYEGEHNHPR-LPSQSATT 318
           RKHVERC++E +MLIVTYEGEHNH R L SQSA T
Sbjct: 296 RKHVERCIDETSMLIVTYEGEHNHSRILSSQSAHT 330

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU6|WRK74_ARATH Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=2 SV=2

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 164/325 (50%), Positives = 209/325 (64%), Gaps = 34/325 (10%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           MVET EAV +FK+V SLL+ G G  +++KL       + S+    P H          FL
Sbjct: 33  MVETREAVCKFKRVSSLLSRGLGQRKIKKLNNNNYKFSSSLL---PQH---------MFL 80

Query: 61  QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQ 120
           +S     PV    +++     L    L+++  G   L L  Q  +      FL+ +    
Sbjct: 81  ES-----PVCSNNAISGCIPILAPKPLQIVPAGPPPLMLFNQ--NMCLDKSFLELKPPSS 133

Query: 121 RLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSS---SC-TPTMSS-NRSFISSLSMD 175
           R +  +  Q  H      + ++ +S SG++L FD S   SC +P++S+ +RSF+SSLSMD
Sbjct: 134 RAVDPKPYQFIH---THQQGVYSRSKSGLNLKFDGSIGASCYSPSISNGSRSFVSSLSMD 190

Query: 176 GSVANLDGSAFHLIGAPRSSDQSSQQHKRK-CSGRGEDGSVKCGSNGRCHCSKKRKHRVK 234
           GSV + D ++FHLIG P+ SD  SQ  +R  CSG     S+KCGS  +CHCSKKRK RVK
Sbjct: 191 GSVTDYDRNSFHLIGLPQGSDHISQHSRRTSCSG-----SLKCGSKSKCHCSKKRKLRVK 245

Query: 235 KSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEE 294
           +SIKVPAISNK+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC+EE
Sbjct: 246 RSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEE 305

Query: 295 PTMLIVTYEGEHNHPR-LPSQSATT 318
            +MLIVTYEGEHNH R L SQSA T
Sbjct: 306 TSMLIVTYEGEHNHSRILSSQSAHT 330

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays PE=1 SV=1

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 219/372 (58%), Gaps = 66/372 (17%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSG------HARVRKLRKLPNPVNQSIFLE---------- 44
           +  TGEAV +F  + + L+N +G      HARVRK++K  +  + ++FLE          
Sbjct: 36  VAATGEAVAKFGSLTAKLSNSNGDGLLQGHARVRKVKKPLHIFDSNLFLESSAVAAAAAP 95

Query: 45  ------NPHHKTEIPSKNLQFLQSSFHDN---PVQEMGSLAKSSLTLGN--------PSL 87
                 +P    ++  +  QF  SS  D    P Q    L     T G         P +
Sbjct: 96  AKTPSPSPILGLQLFPRYHQFEGSSSKDPVRIPTQFPKRLLLEKPTAGMEGSTSQSPPIV 155

Query: 88  ELISNGKQHLQLGQQTPSTS-AHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSN 146
           +++         G  TP+   AH HF+QQQQ  QR    QQ      MK+Q+E M ++SN
Sbjct: 156 QMVQPVSVAPPAGTPTPALPPAHLHFIQQQQSYQRFQLMQQ------MKIQSE-MMKRSN 208

Query: 147 ----------------SGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGS----AF 186
                            GV+L FDSS+CT + S +    SSLSM+GS+A+LDGS     F
Sbjct: 209 LGDQGGSLSGGGGGGRKGVNLKFDSSNCTASSSRSFL--SSLSMEGSLASLDGSRTSRPF 266

Query: 187 HLIGAPR--SSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISN 244
            L+   +  S+ +     +R+C+GR EDG+ +C +  RCHCSKKRK R+++SIKVPAISN
Sbjct: 267 QLLSGSQTASTPELGLVQRRRCAGR-EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISN 325

Query: 245 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEG 304
           K+ADIP D++SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC+++P+MLIVTYEG
Sbjct: 326 KVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEG 385

Query: 305 EHNHPRLPSQSA 316
           +HNH R+ +Q A
Sbjct: 386 DHNHNRVLAQPA 397

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Zea mays (taxid: 4577)

>sp|Q9SV15|WRK11_ARATH Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/317 (39%), Positives = 158/317 (49%), Gaps = 76/317 (23%)

Query: 4   TGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQSS 63
           T   V +FK V+SLLN  +GHAR R+                P H T   S   Q LQS 
Sbjct: 51  TDFTVSKFKTVISLLNR-TGHARFRR---------------GPVHSTS--SAASQKLQSQ 92

Query: 64  FHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQRLL 123
              N                 P   ++     H Q+    P +S    F +      +  
Sbjct: 93  IVKN---------------TQPEAPIVRTTTNHPQI--VPPPSSVTLDFSKPSIFGTK-- 133

Query: 124 HQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISS-LSMDGSVANLD 182
                         AE  F K N  VSLN              SF+SS ++ DGSV+N  
Sbjct: 134 -----------AKSAELEFSKENFSVSLN-------------SSFMSSAITGDGSVSN-- 167

Query: 183 GSAFHLIGAPRSSDQSSQQ-------HKRKC----SGRGEDGSVKCGSNGRCHCSKKRKH 231
           G  F L  AP     SS +       ++++C          G V   + G+CHC K RK+
Sbjct: 168 GKIF-LASAPLQPVNSSGKPPLAGHPYRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKN 226

Query: 232 RVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 291
           R+K++++VPAIS K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER 
Sbjct: 227 RMKRTVRVPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERA 286

Query: 292 LEEPTMLIVTYEGEHNH 308
           L++P MLIVTYEGEH H
Sbjct: 287 LDDPAMLIVTYEGEHRH 303

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJA8|WRK17_ARATH Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=2 SV=2

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 107/149 (71%), Gaps = 13/149 (8%)

Query: 171 SLSMDGSVANLDGSAFHLIGAPRSSDQSSQQ-------HKRKCS----GRGEDGSVKCGS 219
           +++ DGSV+   GS+  L  AP     SS +       ++++C       G  G +    
Sbjct: 154 AITGDGSVSK--GSSIFLAPAPAVPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSG 211

Query: 220 NGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSM 279
           NG+CHC K RK+R+K++++VPA+S K+ADIPPD+YSWRKYGQKPIKGSPHPRGYYKCS+ 
Sbjct: 212 NGKCHCKKSRKNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTF 271

Query: 280 RGCPARKHVERCLEEPTMLIVTYEGEHNH 308
           RGCPARKHVER L++ TMLIVTYEGEH H
Sbjct: 272 RGCPARKHVERALDDSTMLIVTYEGEHRH 300

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 90/112 (80%), Gaps = 2/112 (1%)

Query: 199 SQQHKRKCSGRG--EDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSW 256
           S+  KRKC+             S+GRCHCSKKRK + ++ I+VPAIS K++D+PPDDYSW
Sbjct: 186 SKSTKRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDYSW 245

Query: 257 RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308
           RKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVER  ++ +MLIVTYEG+HNH
Sbjct: 246 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNH 297

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 111/164 (67%), Gaps = 17/164 (10%)

Query: 150 SLNFDSSSCTPTMSSNRSFISSLSMDGSVANLD-GSAF----HLIGAPRSSDQSSQQHKR 204
           ++NF  S   P +S+  SF+SS   D    ++  G  F     L G+      SS   KR
Sbjct: 187 TINFAPS---PPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGSRGKPPLSSASLKR 243

Query: 205 KCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLADIPPDDYSWRKYGQKPI 264
           +C+            + RCHCSKKRK RVK+ I+VPA+S+K+ADIP D++SWRKYGQKPI
Sbjct: 244 RCNS---------SPSSRCHCSKKRKSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPI 294

Query: 265 KGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308
           KGSPHPRGYYKCSS+RGCPARKHVER L++  MLIVTYEG+HNH
Sbjct: 295 KGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNH 338

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O64747|WRK35_ARATH Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 6/105 (5%)

Query: 215 VKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLAD-----IPPDDYSWRKYGQKPIKGSPH 269
           V+  S+ R    K+RK + KK + +PA +   +      +P D ++WRKYGQKPIKGSP+
Sbjct: 174 VQISSSPRNLGIKRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPY 233

Query: 270 PRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQ 314
           PRGYY+CSS +GC ARK VER   +P ML++TY  EHNHP  P+Q
Sbjct: 234 PRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHP-WPTQ 277

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP56|WRK65_ARATH Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 56/68 (82%), Gaps = 1/68 (1%)

Query: 250 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 309
           P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER  ++PTM+++TY  EHNHP
Sbjct: 73  PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHP 132

Query: 310 RLPSQSAT 317
             P  S+T
Sbjct: 133 -WPLTSST 139

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
255559953	353	WRKY transcription factor, putative [Ric	0.993	0.895	0.785	1e-137
224082746	347	predicted protein [Populus trichocarpa]	0.977	0.896	0.793	1e-134
224066297	351	predicted protein [Populus trichocarpa]	0.990	0.897	0.787	1e-132
351725433	321	transcription factor [Glycine max] gi|16	0.987	0.978	0.760	1e-126
225437249	340	PREDICTED: probable WRKY transcription f	0.955	0.894	0.737	1e-124
356536719	392	PREDICTED: probable WRKY transcription f	0.977	0.793	0.741	1e-122
302399135	355	WRKY domain class transcription factor [	0.987	0.884	0.727	1e-121
350540816	342	WRKY8, partial [Panax quinquefolius]	0.952	0.885	0.692	1e-120
350540824	339	WRKY35 [Panax quinquefolius]	0.962	0.902	0.688	1e-114
297735511	284	unnamed protein product [Vitis vinifera]	0.886	0.992	0.689	1e-111

>gi|255559953|ref|XP_002520995.1| WRKY transcription factor, putative [Ricinus communis] gi|223539832|gb|EEF41412.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/321 (78%), Positives = 282/321 (87%), Gaps = 5/321 (1%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           M ETGEAVF+FK+V+SLLN+G GHARVRKL+KLP P++Q+I L+NPHH+T+ PSKN QFL
Sbjct: 35  MAETGEAVFKFKRVISLLNSGLGHARVRKLKKLPTPISQNILLDNPHHRTDHPSKNYQFL 94

Query: 61  QSS-FHDN-PVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQL 118
           QSS + DN P+QE+GS +KSSL LG PSLEL +NGK  L + QQTPS   HYHFLQQQQ 
Sbjct: 95  QSSSYLDNQPIQELGSNSKSSLCLGTPSLELSTNGKNPLHVAQQTPS--PHYHFLQQQQQ 152

Query: 119 QQRLLHQQQQQQQHHMKLQ-AEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGS 177
            Q     Q QQQ      Q AE MFRKSNSG++LNFD+SSCTPTMSSNRSFISSLS+DGS
Sbjct: 153 LQLQQRIQLQQQHQQQMKQQAEIMFRKSNSGINLNFDNSSCTPTMSSNRSFISSLSIDGS 212

Query: 178 VANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSI 237
           V N++GSAFHLIG PR+SDQSSQQHKRKCSGRGEDGSVKCGS+GRCHCSKKRKHRVK+SI
Sbjct: 213 VTNMEGSAFHLIGGPRASDQSSQQHKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSI 272

Query: 238 KVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTM 297
           KVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+M
Sbjct: 273 KVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSM 332

Query: 298 LIVTYEGEHNHPRLPSQSATT 318
           LIVTYEGEHNHPR+P+QSA T
Sbjct: 333 LIVTYEGEHNHPRIPTQSANT 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082746|ref|XP_002306823.1| predicted protein [Populus trichocarpa] gi|222856272|gb|EEE93819.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/320 (79%), Positives = 277/320 (86%), Gaps = 9/320 (2%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           MVETGEAVFRFKKVVSLLN G GHARVRKL+KLP P++QSI L+NP   T+ PSK  QFL
Sbjct: 35  MVETGEAVFRFKKVVSLLNTGLGHARVRKLKKLPTPLSQSILLDNPLSSTDHPSKTPQFL 94

Query: 61  QSS--FHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQL 118
           QSS      P+QE+GS+AK+ L+LG PSLEL SNGK  LQLGQ TP+  AHY FLQQQQL
Sbjct: 95  QSSSYLESQPIQELGSIAKNCLSLGTPSLELSSNGKNPLQLGQPTPA--AHYQFLQQQQL 152

Query: 119 QQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSV 178
            +      Q QQQ  MK QAE MFRKSNSG+SLNFDSSSCTPTMSS RSFISSLS+DG+V
Sbjct: 153 HR-----LQLQQQQQMKQQAEMMFRKSNSGISLNFDSSSCTPTMSSTRSFISSLSIDGNV 207

Query: 179 ANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIK 238
           ANL+GSAFHL GA RSSDQSSQQHKRKCSGRGEDGS+KCGS+ RCHCSKKRKHRVK+SIK
Sbjct: 208 ANLEGSAFHLTGAARSSDQSSQQHKRKCSGRGEDGSMKCGSSVRCHCSKKRKHRVKRSIK 267

Query: 239 VPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTML 298
           VPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+ML
Sbjct: 268 VPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSML 327

Query: 299 IVTYEGEHNHPRLPSQSATT 318
           IVTYEGEHNHPR+P+QS  T
Sbjct: 328 IVTYEGEHNHPRIPAQSTNT 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066297|ref|XP_002302070.1| predicted protein [Populus trichocarpa] gi|222843796|gb|EEE81343.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/320 (78%), Positives = 278/320 (86%), Gaps = 5/320 (1%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           MVETGEAVFRFKKVVSLLN G GHARVRKL+KLP P++QSI L+N  ++T   SK  QFL
Sbjct: 35  MVETGEAVFRFKKVVSLLNTGLGHARVRKLKKLPTPLSQSILLDNSLNRTGHSSKTPQFL 94

Query: 61  QSS--FHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQL 118
           QSS     +P+QE+GS AK+ L+LG PSLEL S GK  LQLGQ  P+++A+Y FLQ QQ 
Sbjct: 95  QSSSYLESHPIQELGSSAKNCLSLGTPSLELSSTGKNPLQLGQ--PTSAANYQFLQLQQQ 152

Query: 119 QQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSV 178
           Q   L  QQQQQQ   + QAE MFRKSNSG+SLNFDSSSCTPTMSS RSFISSLS+DGSV
Sbjct: 153 QLHRLQLQQQQQQQMKQ-QAEMMFRKSNSGISLNFDSSSCTPTMSSTRSFISSLSIDGSV 211

Query: 179 ANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIK 238
           ANL+GSAFHL+G  RSSDQSSQQHKRKCSGRGEDGSVKCGS+GRCHCSKKRKHRVK+SIK
Sbjct: 212 ANLEGSAFHLMGPARSSDQSSQQHKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIK 271

Query: 239 VPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTML 298
           VPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+ML
Sbjct: 272 VPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSML 331

Query: 299 IVTYEGEHNHPRLPSQSATT 318
           IVTYEGEHNHPR+P+QSA T
Sbjct: 332 IVTYEGEHNHPRIPAQSANT 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725433|ref|NP_001237604.1| transcription factor [Glycine max] gi|166203240|gb|ABY84660.1| transcription factor [Glycine max]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/321 (76%), Positives = 274/321 (85%), Gaps = 7/321 (2%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVN-QSIFLENPHHKT--EIPSKNL 57
           MVETGEAV RFKKVVSLL++G GHARVRK++    P + QSIFL+NP+ KT      KNL
Sbjct: 1   MVETGEAVVRFKKVVSLLHSGMGHARVRKVKNPQIPFSHQSIFLDNPNCKTINNHHFKNL 60

Query: 58  QFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQ 117
           QF Q+SF DN +QE+GS  K+SL+LG PSLEL SNGK  L L QQ  ++S HYHF QQQQ
Sbjct: 61  QFPQTSFPDNSIQELGSTIKNSLSLGQPSLELSSNGKSPLHLTQQ--ASSNHYHFFQQQQ 118

Query: 118 LQQRLLHQQQQQQQHH--MKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMD 175
            QQ+     QQQQQ    MK QAE MFR++NSG++LNFDS+SCT TMSS RSFISSLS+D
Sbjct: 119 QQQQQRLLLQQQQQQQQQMKHQAEMMFRRNNSGINLNFDSTSCTLTMSSTRSFISSLSID 178

Query: 176 GSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKK 235
           GSVANLDGSAFHLIGAP SSDQ+SQQHKRKCS RG++GS+KCGS+ RCHCSKKRKHRVK+
Sbjct: 179 GSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKR 238

Query: 236 SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP 295
           +IKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP
Sbjct: 239 AIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP 298

Query: 296 TMLIVTYEGEHNHPRLPSQSA 316
           TMLIVTYEGEHNHP+LP+QSA
Sbjct: 299 TMLIVTYEGEHNHPKLPTQSA 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437249|ref|XP_002282258.1| PREDICTED: probable WRKY transcription factor 21 [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/316 (73%), Positives = 261/316 (82%), Gaps = 12/316 (3%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           MVETGEAV RF +VVSLLN G GHARVRK +    P+  +I L+ P+ K + PSK  QFL
Sbjct: 35  MVETGEAVVRFNRVVSLLNTGLGHARVRKSKNFQTPLPHNILLDKPNAKQDHPSKTFQFL 94

Query: 61  QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQ 120
            SS  + P+QEMGS AK+++ LGNPSLEL SNGK  LQL Q  PS S +Y FL  QQ   
Sbjct: 95  HSSSLEKPIQEMGSNAKNTMGLGNPSLELTSNGKSPLQLSQLIPS-STNYQFLHHQQ--- 150

Query: 121 RLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVAN 180
                 QQ+ Q  MK QA+ M+R+SNSG++LNFDSSSCTPTMSS RSFISSLS+DGSVAN
Sbjct: 151 ------QQRLQQQMKHQADTMYRRSNSGINLNFDSSSCTPTMSSTRSFISSLSVDGSVAN 204

Query: 181 LDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVP 240
           LDG+AFHLIG P  SDQ+S QHKRKCS RGE+GSVKCGS+GRCHCSKKRKHRVK+SIKVP
Sbjct: 205 LDGNAFHLIG-PARSDQNSFQHKRKCS-RGEEGSVKCGSSGRCHCSKKRKHRVKRSIKVP 262

Query: 241 AISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 300
           AISNKLADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIV
Sbjct: 263 AISNKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIV 322

Query: 301 TYEGEHNHPRLPSQSA 316
           TYEGEHNHPRLPSQSA
Sbjct: 323 TYEGEHNHPRLPSQSA 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536719|ref|XP_003536883.1| PREDICTED: probable WRKY transcription factor 21-like [Glycine max]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/325 (74%), Positives = 270/325 (83%), Gaps = 14/325 (4%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVN-QSIFLENPHHKT--------E 51
           MVETGE V RFKKVVS+L+NG GHARVRKL+    P + QSIFL+NP+ KT         
Sbjct: 71  MVETGETVVRFKKVVSMLHNGLGHARVRKLKNPQIPSSHQSIFLDNPNCKTLTNNSNNNH 130

Query: 52  IPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYH 111
              KNL F Q+S+ DN VQE GS  K+SL+LG PSLEL SNGK  L L QQ   +S HYH
Sbjct: 131 HSKKNLYFPQTSYPDNSVQEHGSTIKNSLSLGQPSLELSSNGKSPLHLTQQ--GSSNHYH 188

Query: 112 FLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISS 171
           F QQQQ Q+     QQQQQQ  MK QAE +FR++NSG++LNFDS+SCTPTMSS +SFISS
Sbjct: 189 FFQQQQQQRL---LQQQQQQQQMKHQAEMLFRRNNSGINLNFDSTSCTPTMSSTKSFISS 245

Query: 172 LSMDGSVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKH 231
           LS+DGSVANLDGSAFHLIGAP SSDQ+SQQ KRKCS RG++GS+KCGS+ RCHCSKKRKH
Sbjct: 246 LSIDGSVANLDGSAFHLIGAPHSSDQNSQQPKRKCSARGDEGSLKCGSSARCHCSKKRKH 305

Query: 232 RVKKSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 291
           RVK++IKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC
Sbjct: 306 RVKRAIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERC 365

Query: 292 LEEPTMLIVTYEGEHNHPRLPSQSA 316
           LEEPTMLIVTYEGEHNHP+LP+QSA
Sbjct: 366 LEEPTMLIVTYEGEHNHPKLPTQSA 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399135|gb|ADL36862.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 264/323 (81%), Gaps = 9/323 (2%)

Query: 2   VETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFLQ 61
           VETG+AV RFKKVVS+LN G GHARVRKL+KL  P  + I L+NP    + PSK   FLQ
Sbjct: 36  VETGKAVSRFKKVVSILNTGLGHARVRKLKKLQIPFPERILLDNPISIADRPSKTPHFLQ 95

Query: 62  SSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQR 121
           SSF +NP Q++    KS+L LGNPSLEL +NGK  +   QQ P   A YH LQQQ+  Q+
Sbjct: 96  SSFPENPTQDLSLDVKSALCLGNPSLELSTNGKTPIHPAQQVPP--AQYHLLQQQRQHQQ 153

Query: 122 LLHQQQQQQQHH-----MKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDG 176
              QQQ QQ+       MK Q E M+R+SNSG++LNFDSSSCTPTMSS RSFISSLS+DG
Sbjct: 154 HQQQQQLQQRMLLQQHQMKQQTEMMYRRSNSGINLNFDSSSCTPTMSSTRSFISSLSIDG 213

Query: 177 SVANLDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCG-SNGRCHCSKKRKHRVKK 235
           SVAN DG++FHLIGAP SSDQ+SQ HKRKCS RG+DGSVKCG S+GRCHCSKKRKHRVK+
Sbjct: 214 SVANFDGNSFHLIGAPLSSDQNSQ-HKRKCSARGDDGSVKCGGSSGRCHCSKKRKHRVKR 272

Query: 236 SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP 295
           SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP
Sbjct: 273 SIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEP 332

Query: 296 TMLIVTYEGEHNHPRLPSQSATT 318
           +ML+VTYEGEHNHPR+PSQS TT
Sbjct: 333 SMLMVTYEGEHNHPRIPSQSTTT 355

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540816|gb|AEQ29021.1| WRKY8, partial [Panax quinquefolius]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/315 (69%), Positives = 257/315 (81%), Gaps = 12/315 (3%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           +VETGEAV +F+KVVSLLN G GHARVRK+ K+  P  Q+I L+NP  + +   K +Q L
Sbjct: 34  VVETGEAVLKFEKVVSLLNAGLGHARVRKIEKIQTPFPQNILLDNPIGRPDYQPKAIQLL 93

Query: 61  QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQ 120
            ++  D P+ + GS  +S+LTLGN SLEL SNGK  LQ+ QQTP ++ H+          
Sbjct: 94  PANSLDTPIHDNGSNVRSTLTLGNSSLELSSNGKNSLQIPQQTPPSNYHFL--------- 144

Query: 121 RLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVAN 180
               Q+ Q QQ  +K QAE MFR+SNSG++LNFDSS+CTPTMSS RSFISSLS+DGSVAN
Sbjct: 145 ---QQKFQLQQQQLKQQAEMMFRRSNSGINLNFDSSTCTPTMSSTRSFISSLSVDGSVAN 201

Query: 181 LDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVP 240
           ++G+AFHLIGA RS DQSS QHKR+CS +G+DGSVKCGS+GRCHCSKKRKHRVK+SIKVP
Sbjct: 202 MEGNAFHLIGATRSLDQSSYQHKRRCSAKGDDGSVKCGSSGRCHCSKKRKHRVKRSIKVP 261

Query: 241 AISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 300
           AISNKLADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIV
Sbjct: 262 AISNKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIV 321

Query: 301 TYEGEHNHPRLPSQS 315
           TYEGEHNHPR+P QS
Sbjct: 322 TYEGEHNHPRIPVQS 336

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540824|gb|AEQ29025.1| WRKY35 [Panax quinquefolius]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/318 (68%), Positives = 257/318 (80%), Gaps = 12/318 (3%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           +VETGEAV +F+KVVSLLN G GHARVRK+ K+  P  Q+I L+NP  + +   K +Q L
Sbjct: 34  VVETGEAVLKFEKVVSLLNAGLGHARVRKIEKIQTPFPQNILLDNPIGRPDYQPKAIQLL 93

Query: 61  QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQ 120
            ++  D P+ + GS  +S+LTLGN SLEL SNGK  LQ+ QQTP ++ H+          
Sbjct: 94  PANSLDTPIHDNGSNVRSTLTLGNSSLELSSNGKNSLQIPQQTPPSNYHFL--------- 144

Query: 121 RLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVAN 180
               Q+ Q QQ  +K QAE MFR+SNSGV+LNFDSS+CTPTMSS RSFISS S DGSVAN
Sbjct: 145 ---QQKFQLQQQQLKQQAEMMFRRSNSGVNLNFDSSTCTPTMSSTRSFISSSSADGSVAN 201

Query: 181 LDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVP 240
           ++G+AFHLIGA RS DQSS QHKR+CS +G+DGSVKCGS+GRC+CSKKRKHRVK+SIKVP
Sbjct: 202 MEGNAFHLIGATRSLDQSSYQHKRRCSAKGDDGSVKCGSSGRCYCSKKRKHRVKRSIKVP 261

Query: 241 AISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 300
           AISNKLADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIV
Sbjct: 262 AISNKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIV 321

Query: 301 TYEGEHNHPRLPSQSATT 318
           TYEGEHNHPR+P QS TT
Sbjct: 322 TYEGEHNHPRIPVQSTTT 339

Source: Panax quinquefolius

Species: Panax quinquefolius

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735511|emb|CBI17951.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/316 (68%), Positives = 243/316 (76%), Gaps = 34/316 (10%)

Query: 1   MVETGEAVFRFKKVVSLLNNGSGHARVRKLRKLPNPVNQSIFLENPHHKTEIPSKNLQFL 60
           MVETGEAV RF +VVSLLN G GHARVRK +    P+  +I L+ P+ K + PSK  QFL
Sbjct: 1   MVETGEAVVRFNRVVSLLNTGLGHARVRKSKNFQTPLPHNILLDKPNAKQDHPSKTFQFL 60

Query: 61  QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQLGQQTPSTSAHYHFLQQQQLQQ 120
            SS  + P+QEMG L                      QL Q  PS S +Y FL  QQ   
Sbjct: 61  HSSSLEKPIQEMGPL----------------------QLSQLIPS-STNYQFLHHQQ--- 94

Query: 121 RLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVAN 180
                 QQ+ Q  MK QA+ M+R+SNSG++LNFDSSSCTPTMSS RSFISSLS+DGSVAN
Sbjct: 95  ------QQRLQQQMKHQADTMYRRSNSGINLNFDSSSCTPTMSSTRSFISSLSVDGSVAN 148

Query: 181 LDGSAFHLIGAPRSSDQSSQQHKRKCSGRGEDGSVKCGSNGRCHCSKKRKHRVKKSIKVP 240
           LDG+AFHLIG P  SDQ+S QHKRKCS RGE+GSVKCGS+GRCHCSKKRKHRVK+SIKVP
Sbjct: 149 LDGNAFHLIG-PARSDQNSFQHKRKCS-RGEEGSVKCGSSGRCHCSKKRKHRVKRSIKVP 206

Query: 241 AISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIV 300
           AISNKLADIPPD+YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLE+P+MLIV
Sbjct: 207 AISNKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIV 266

Query: 301 TYEGEHNHPRLPSQSA 316
           TYEGEHNHPRLPSQSA
Sbjct: 267 TYEGEHNHPRLPSQSA 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2064377	380	WRKY21 "WRKY DNA-binding prote	0.566	0.473	0.683	2.5e-81
TAIR|locus:2084943	330	WRKY39 "WRKY DNA-binding prote	0.531	0.512	0.628	1.6e-63
TAIR|locus:2148815	330	WRKY74 "WRKY DNA-binding prote	0.544	0.524	0.610	2e-61
UNIPROTKB|Q32SG4	397	Q32SG4 "Protein WRKY1" [Zea ma	0.522	0.418	0.571	4.2e-55
TAIR|locus:2046653	321	WRKY17 "WRKY DNA-binding prote	0.537	0.532	0.470	4.6e-42
TAIR|locus:2125239	325	WRKY11 "WRKY DNA-binding prote	0.512	0.501	0.485	1.2e-39
TAIR|locus:2135967	353	WRKY7 "WRKY DNA-binding protei	0.462	0.416	0.469	1.3e-36
TAIR|locus:2058568	317	WRKY15 "WRKY DNA-binding prote	0.522	0.523	0.465	1.5e-33
TAIR|locus:2029919	259	WRKY65 "WRKY DNA-binding prote	0.210	0.258	0.661	2.3e-23
TAIR|locus:2044777	427	WRKY35 "WRKY DNA-binding prote	0.232	0.173	0.589	1.7e-21

TAIR|locus:2064377 WRKY21 "WRKY DNA-binding protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
 Identities = 125/183 (68%), Positives = 146/183 (79%)

Query:   138 AEKMFRKSNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDG-SAFHLIGAPRSSD 196
             AE M RK N G+SL+FD+SSCTPTMSS RSF+SSLS+DGSVAN++G ++FH  G P S+D
Sbjct:   199 AELMLRKCNGGISLSFDNSSCTPTMSSTRSFVSSLSIDGSVANIEGKNSFHF-GVPSSTD 257

Query:   197 QSSQQHKRKCSGRGED-GSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYS 255
             Q+S   KRKC  +G++ GS+KCGS+ R                 PAISNK+ADIPPDDYS
Sbjct:   258 QNSLHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRKHRVRRSIRVPAISNKVADIPPDDYS 317

Query:   256 WRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQS 315
             WRKYGQKPIKGSP+PRGYYKCSSMRGCPARKHVERCLE+P MLIVTYE EHNHP+LPSQ+
Sbjct:   318 WRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPKLPSQA 377

Query:   316 ATT 318
              TT
Sbjct:   378 ITT 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2084943 WRKY39 "WRKY DNA-binding protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 115/183 (62%), Positives = 134/183 (73%)

Query:   142 FRKSNSGVSLNFDSS--SC-TPTMSS-NRSFISSLSMDGSVANLDGSAFHLIGAPRSSDQ 197
             + +SNSGV+L FD S  SC TP++S+ +RSF+SSLSMD SV + D ++FHL G  R SDQ
Sbjct:   156 YSRSNSGVNLKFDGSGSSCYTPSVSNGSRSFVSSLSMDASVTDYDRNSFHLTGLSRGSDQ 215

Query:   198 SSQQHKRK-CSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSW 256
                QH RK CSG     S+KCGS  +                 PAISNK+ADIPPD+YSW
Sbjct:   216 ---QHTRKMCSG-----SLKCGSRSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEYSW 267

Query:   257 RKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR-LPSQS 315
             RKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC++E +MLIVTYEGEHNH R L SQS
Sbjct:   268 RKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNHSRILSSQS 327

Query:   316 ATT 318
             A T
Sbjct:   328 AHT 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

TAIR|locus:2148815 WRKY74 "WRKY DNA-binding protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
 Identities = 113/185 (61%), Positives = 136/185 (73%)

Query:   141 MFRKSNSGVSLNFDSS---SC-TPTMSS-NRSFISSLSMDGSVANLDGSAFHLIGAPRSS 195
             ++ +S SG++L FD S   SC +P++S+ +RSF+SSLSMDGSV + D ++FHLIG P+ S
Sbjct:   151 VYSRSKSGLNLKFDGSIGASCYSPSISNGSRSFVSSLSMDGSVTDYDRNSFHLIGLPQGS 210

Query:   196 DQSSQQHKR-KCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDY 254
             D  SQ  +R  CSG     S+KCGS  +                 PAISNK+ADIPPD+Y
Sbjct:   211 DHISQHSRRTSCSG-----SLKCGSKSKCHCSKKRKLRVKRSIKVPAISNKIADIPPDEY 265

Query:   255 SWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR-LPS 313
             SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVERC+EE +MLIVTYEGEHNH R L S
Sbjct:   266 SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNHSRILSS 325

Query:   314 QSATT 318
             QSA T
Sbjct:   326 QSAHT 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

UNIPROTKB|Q32SG4 Q32SG4 "Protein WRKY1" [Zea mays (taxid:4577)]

 Score = 509 (184.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 100/175 (57%), Positives = 128/175 (73%)

Query:   148 GVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSA----FHLIGAPR--SSDQSSQQ 201
             GV+L FDSS+CT   SS+RSF+SSLSM+GS+A+LDGS     F L+   +  S+ +    
Sbjct:   226 GVNLKFDSSNCTA--SSSRSFLSSLSMEGSLASLDGSRTSRPFQLLSGSQTASTPELGLV 283

Query:   202 HKRKCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQ 261
              +R+C+GR EDG+ +C +  R                 PAISNK+ADIP D++SWRKYGQ
Sbjct:   284 QRRRCAGR-EDGTGRCATGSRCHCSKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQ 342

Query:   262 KPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPSQSA 316
             KPIKGSPHPRGYYKCSS+RGCPARKHVERC+++P+MLIVTYEG+HNH R+ +Q A
Sbjct:   343 KPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNHNRVLAQPA 397

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2046653 WRKY17 "WRKY DNA-binding protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 88/187 (47%), Positives = 111/187 (59%)

Query:   144 KSNSGVSLNFDSSSCTPTMSSNRSFISS-LSMDGSVANLDGSAFHLIGAPR----SSDQ- 197
             K+ S   + F   S +  +SSN SF+SS ++ DGSV+   GS+  L  AP     SS + 
Sbjct:   128 KTKSSEVVEFAKESFS--VSSNSSFMSSAITGDGSVSK--GSSIFLAPAPAVPVTSSGKP 183

Query:   198 --SSQQHKRKC----SGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPP 251
               S   ++++C       G  G +    NG+                 PA+S K+ADIPP
Sbjct:   184 PLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKNRMKRTVRVPAVSAKIADIPP 243

Query:   252 DDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRL 311
             D+YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++ TMLIVTYEGEH H + 
Sbjct:   244 DEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQS 303

Query:   312 PSQSATT 318
               Q   T
Sbjct:   304 TMQEHVT 310

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2125239 WRKY11 "WRKY DNA-binding protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 85/175 (48%), Positives = 102/175 (58%)

Query:   138 AEKMFRKSNSGVSLN--FDSSSCTP--TMSSNRSFISSLSMDGSVANLDGSAFHLIGAPR 193
             AE  F K N  VSLN  F SS+ T   ++S+ + F++S  +     N  G    L G P 
Sbjct:   137 AELEFSKENFSVSLNSSFMSSAITGDGSVSNGKIFLASAPLQP--VNSSGKP-PLAGHPY 193

Query:   194 SSDQSSQQHKRKCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDD 253
                    +H    SG+     V   + G+                 PAIS K+ADIPPD+
Sbjct:   194 RKRCLEHEHSESFSGK-----VSGSAYGKCHCKKSRKNRMKRTVRVPAISAKIADIPPDE 248

Query:   254 YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308
             YSWRKYGQKPIKGSPHPRGYYKCS+ RGCPARKHVER L++P MLIVTYEGEH H
Sbjct:   249 YSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRH 303

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2135967 WRKY7 "WRKY DNA-binding protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 77/164 (46%), Positives = 99/164 (60%)

Query:   150 SLNFDSSSCTPTMSSNRSFISSLSMDGSVANLD-GSAF----HLIGAPRSSDQSSQQHKR 204
             ++NF  S   P +S+  SF+SS   D    ++  G  F     L G+      SS   KR
Sbjct:   187 TINFAPS---PPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGSRGKPPLSSASLKR 243

Query:   205 KCSGRGEDGSVKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDYSWRKYGQKPI 264
             +C+      S +C  + +                 PA+S+K+ADIP D++SWRKYGQKPI
Sbjct:   244 RCNS---SPSSRCHCSKKRKSRVKRVIRV------PAVSSKMADIPSDEFSWRKYGQKPI 294

Query:   265 KGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308
             KGSPHPRGYYKCSS+RGCPARKHVER L++  MLIVTYEG+HNH
Sbjct:   295 KGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNH 338

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA;IPI

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2058568 WRKY15 "WRKY DNA-binding protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 81/174 (46%), Positives = 99/174 (56%)

Query:   140 KMFRK---SNSGVSLNFDSSSCTPTMSSNRSFISSLSMDGSVANLDGSAFHLIGAPRSSD 196
             +M RK   S+S  +++F S S   T S N+  I         A        L     S  
Sbjct:   127 QMIRKGSFSSSMKTIDFSSLSSVTTESDNQKKIHHHQRPSETAPFASQTQSLSTTVSSFS 186

Query:   197 QSSQQHKRKCSGRGE-DGS-VKCGSNGRXXXXXXXXXXXXXXXXXPAISNKLADIPPDDY 254
             +S+   KRKC+      G      S+GR                 PAIS K++D+PPDDY
Sbjct:   187 KST---KRKCNSENLLTGKCASASSSGRCHCSKKRKIKQRRIIRVPAISAKMSDVPPDDY 243

Query:   255 SWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308
             SWRKYGQKPIKGSPHPRGYYKCSS+RGCPARKHVER  ++ +MLIVTYEG+HNH
Sbjct:   244 SWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNH 297

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2029919 WRKY65 "WRKY DNA-binding protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 45/68 (66%), Positives = 56/68 (82%)

Query:   250 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 309
             P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER  ++PTM+++TY  EHNHP
Sbjct:    73 PSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRDDPTMILITYTSEHNHP 132

Query:   310 RLPSQSAT 317
               P  S+T
Sbjct:   133 -WPLTSST 139

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2044777 WRKY35 "WRKY DNA-binding protein 35" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query:   240 PAISNKLAD---IPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPT 296
             PA  N  +    +P D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   +P 
Sbjct:   201 PAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPN 260

Query:   297 MLIVTYEGEHNHPRLPSQ 314
             ML++TY  EHNHP  P+Q
Sbjct:   261 MLVITYTSEHNHP-WPTQ 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04336	WRK21_ARATH	No assigned EC number	0.5693	0.9779	0.8184	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V1110 hypothetical protein (348 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
smart00774	59	smart00774, WRKY, DNA binding domain	1e-34
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-33
pfam10533	47	pfam10533, Plant_zn_clust, Plant zinc cluster doma	9e-17
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	0.004

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  119 bits (302), Expect = 1e-34
 Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 251 PDD-YSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308
            DD Y WRKYGQK IKGSP+PR YY+C+  +GCPA+K V+R  ++P+++ VTYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  116 bits (292), Expect = 3e-33
 Identities = 37/61 (60%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 250 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHP 309
             D Y+WRKYGQKP+KGSP PR YY+C+S  GCP +K VER  ++P ++ +TYEGEHNHP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTS-PGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Query: 310 R 310
           +
Sbjct: 60  K 60

Length = 60

>gnl|CDD|192617 pfam10533, Plant_zn_clust, Plant zinc cluster domain

 Score = 72.4 bits (178), Expect = 9e-17
 Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 203 KRKCSGRG-EDGSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLAD 248
           K++CS     +G     S+GRCHCSKKRK RVK++I+VPAIS+K+AD
Sbjct: 1   KKRCSEANDSEGKCAASSSGRCHCSKKRKSRVKRTIRVPAISSKIAD 47

This zinc binding domain was identified by Babu and colleagues and found associated with the WRKY domain pfam03106. Length = 47

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 38  NQSIFL--ENPHHKTEIPSKNLQFLQSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGK 94
           NQ I +  E+   KTE   K +Q+L +S   +    +G L +  +   NP LE   N K
Sbjct: 85  NQCIVISGESGAGKTENTKKLMQYL-ASVSGSTPSAVGPL-EDQILQSNPILEAFGNAK 141

Length = 679

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
PF10533	47	Plant_zn_clust: Plant zinc cluster domain; InterPr	99.26
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	91.79
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.21

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=9e-31  Score=197.22  Aligned_cols=59  Identities=59%  Similarity=1.198  Sum_probs=56.6

Q ss_pred             CCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCC
Q 021011          250 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH  308 (318)
Q Consensus       250 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H  308 (318)
                      ++|||.|||||||.|+|+++||+||||++.+||+|+|+|||+.+|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999996589999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.4e-31  Score=200.24  Aligned_cols=60  Identities=63%  Similarity=1.301  Sum_probs=52.0

Q ss_pred             CCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCC
Q 021011          250 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPR  310 (318)
Q Consensus       250 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~  310 (318)
                      ++|||+|||||||.|+|+++||+||||++ .+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~-~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTH-PGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEEC-TTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccc-cChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            37999999999999999999999999995 7999999999999999999999999999974

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO []

Probab=99.26  E-value=4e-12  Score=92.41  Aligned_cols=46  Identities=65%  Similarity=1.189  Sum_probs=38.1

Q ss_pred             ccccCCCCCC-CCCccCCCCcccccccccccccceEEeecccCCCCC
Q 021011          203 KRKCSGRGED-GSVKCGSNGRCHCSKKRKHRVKKSIKVPAISNKLAD  248 (318)
Q Consensus       203 kr~c~~~g~~-~~~k~~~~~r~~~sKrrK~r~kr~i~vpa~s~~~~d  248 (318)
                      +++|.+.+++ +..+++++++|||+||||.|+||+|+|||||++++|
T Consensus         1 krkC~~~~~~~~~~~~sssgrCHCsKkRK~RvKR~irVPAiS~K~AD   47 (47)
T PF10533_consen    1 KRKCHSHNDSSGKCKCSSSGRCHCSKKRKSRVKRTIRVPAISSKIAD   47 (47)
T ss_pred             CCcccccCcccCccccCCCCcccCCCcccccceeeEEeecccccccC
Confidence            5788876543 333467899999999999999999999999999875

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=91.79  E-value=0.14  Score=39.72  Aligned_cols=33  Identities=36%  Similarity=0.600  Sum_probs=27.2

Q ss_pred             CCCCccccceeecCCCCcEEEEEEeccCCCCCCC
Q 021011          279 MRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP  312 (318)
Q Consensus       279 ~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~~  312 (318)
                      ..||+|+=.|.+.. |....++.+..+|||+-.|
T Consensus        59 ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   59 KTGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             ccCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            35899998888776 7777778899999998754

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.21  E-value=0.088  Score=37.48  Aligned_cols=48  Identities=31%  Similarity=0.605  Sum_probs=23.9

Q ss_pred             CCCccccccCCCCCCCCCCCccccccCCC--CCCccccceeecCCCCcEEEEEEeccCCC
Q 021011          251 PDDYSWRKYGQKPIKGSPHPRGYYKCSSM--RGCPARKHVERCLEEPTMLIVTYEGEHNH  308 (318)
Q Consensus       251 ~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~--~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H  308 (318)
                      -|||.-.++...      ....|++|+..  .+|+|+=.+.  .++.. + +...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~-~-~~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR-V-VRTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE-E-EE-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE-E-EECCCccCC
Confidence            588877765544      33589999962  3799987777  34443 3 335699998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		2e-15

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 243 SNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTY 302
           +  L DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER   +  +LI TY
Sbjct: 7   TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTY 65
Query: 303 EGEHNH 308
           EG+H+H
Sbjct: 66  EGKHDH 71

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/61 (57%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 248 DIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHN 307
           D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+HN
Sbjct: 15  DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 308 H 308
           H
Sbjct: 74  H 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-36
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  124 bits (314), Expect = 2e-36
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 238 KVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTM 297
           ++   +  L DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER   +  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKL 60

Query: 298 LIVTYEGEHNHPRLP 312
           LI TYEG+H+H   P
Sbjct: 61  LITTYEGKHDHDMPP 75

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  122 bits (309), Expect = 1e-35
 Identities = 35/63 (55%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 247 ADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEH 306
            D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+H
Sbjct: 14  VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 72

Query: 307 NHP 309
           NH 
Sbjct: 73  NHD 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 23/158 (14%), Positives = 35/158 (22%), Gaps = 52/158 (32%)

Query: 40  SIFLENPHHKTEIPSKNLQFL-QSSFHDNPVQEMGSLAKSSLTLGNPSLELISNGKQHLQ 98
           S+F  +      IP+  L  +       + +  +  L K SL    P    IS       
Sbjct: 379 SVFPPS----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------- 427

Query: 99  LGQQTPSTSAHYHFLQQQQLQQRLLHQQQQQQQHHMKLQAEKMFRKSNSGVSLNFDSSSC 158
                              +   L  + + +   H  +       K        FDS   
Sbjct: 428 -----------IP-----SIYLELKVKLENEYALHRSIVDHYNIPK-------TFDSDDL 464

Query: 159 TPTMSSN--RSFISSLSMDGSVANLDGSAFHLIGAPRS 194
            P        S I                 HL      
Sbjct: 465 IPPYLDQYFYSHI---------------GHHLKNIEHP 487

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.97
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.97

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.97  E-value=4.3e-33  Score=217.98  Aligned_cols=67  Identities=60%  Similarity=1.142  Sum_probs=63.4

Q ss_pred             CCCCCCCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCCCC
Q 021011          245 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP  312 (318)
Q Consensus       245 ~~~di~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~~  312 (318)
                      ...++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            4578999999999999999999999999999995 899999999999999999999999999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.97  E-value=1e-32  Score=216.80  Aligned_cols=69  Identities=51%  Similarity=1.013  Sum_probs=64.1

Q ss_pred             cCCCCCCCCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCCCC
Q 021011          243 SNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP  312 (318)
Q Consensus       243 s~~~~di~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~~  312 (318)
                      +....++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus        10 t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           10 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            344568999999999999999999999999999995 899999999999999999999999999999863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	8e-29

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (259), Expect = 8e-29
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 247 ADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEH 306
            D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVER   +P  ++ TYEG+H
Sbjct: 7   VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKH 65

Query: 307 NHPRLPS 313
           NH   P+
Sbjct: 66  NHDL-PA 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=3.5e-33  Score=214.23  Aligned_cols=66  Identities=53%  Similarity=1.047  Sum_probs=62.2

Q ss_pred             CCCCCCCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCCC
Q 021011          245 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRL  311 (318)
Q Consensus       245 ~~~di~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~  311 (318)
                      ...++++|||.|||||||.|+|+++||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus         5 ~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           5 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             cccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            3457899999999999999999999999999995 89999999999999999999999999999875