Citrus Sinensis ID: 021060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG
Secondary Structure (PSIPRED)
cccEEEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccHHHHccEEEEEEccccccccccccccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHccccccccccccccccccHHHHHHHccccccccccccccHHHccccccccccHHccccEEEEccccccEEEccccccccHccccccccccccccHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHcEccccccccccEccccccEEEcccccccEEccccccEEEEEEccccccEHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEccccccccccEccc
Coil and Loop (DISEMBL)
MSINIVVAMAGLevhhsshqqfepmstsckadeifstpsyshladreflvteestnhngsteLLRKGFMEYGCQHYrrrcrirapccneifdcrhchneamnninvdqklrhdiprhevNQVICSLCGTEQKVQQVCVNCgvcmgeyfcescklfdddtskkqyhcdgcgicriggcdnffhcnkcrccysmllknshpcvegamhhdcpvccEYLFetrqdvivlpcghtIHKNCLKEMRehhqyacpicsksvcdMSKVWEKYDREiaatpmpeaylNKKVWILcndcgktsnVQFHVLAqkcpncksyntrltrg
Flexible Loop (DISEMBL)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTeestnhngstellrkgFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVlaqkcpncksyntrltrg
Low Complexity Region (SEG)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHcdgcgicriggcdNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG
Disordered region (IsUnstruct)
****IVVAMAGL*****************************HLADREFLV**********TELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY*******
Disordered Region (DISOPRED)
****I*VAMAG**********************************************************EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT**
Disordered Region (DISEMBL)
MSINIVVAMAGLEVHH***********SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKS********
Disordered Region (DISPRO)
*SINIVVAMAGLEVHHSS*********************************************LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQ*LRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSINIVVAMAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q96PM5	261	RING finger and CHY zinc	yes	no	0.745	0.908	0.453	5e-57
Q9CR50	261	RING finger and CHY zinc	yes	no	0.738	0.900	0.449	3e-56
O14099	425	Uncharacterized RING fing	yes	no	0.792	0.592	0.382	5e-48
Q8BGI1	148	RING finger protein 24 OS	no	no	0.232	0.5	0.328	0.0006
Q9Y225	148	RING finger protein 24 OS	no	no	0.232	0.5	0.328	0.0006

>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1

 Score =  221 bits (563), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/249 (45%), Positives = 147/249 (59%), Gaps = 12/249 (4%)

Query: 70  EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGT 129
           + GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C  
Sbjct: 17  QRGCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEK 67

Query: 130 EQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCC 189
            Q  QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICRIG  ++FFHC KC  C
Sbjct: 68  IQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLC 125

Query: 190 YSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACP 249
            +M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP
Sbjct: 126 LAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCP 184

Query: 250 ICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCK 309
           +C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+
Sbjct: 185 LCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICE 244

Query: 310 SYNTRLTRG 318
           SYNT    G
Sbjct: 245 SYNTAQAGG 253

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression. Increases AR transcription factor activity.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1

 Score =  218 bits (556), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 144/247 (58%), Gaps = 12/247 (4%)

Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYS 191
             QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +
Sbjct: 70  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127

Query: 192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
             L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C
Sbjct: 128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLC 186

Query: 252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
             S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SY
Sbjct: 187 MHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSY 246

Query: 312 NTRLTRG 318
           NT    G
Sbjct: 247 NTAQAGG 253

Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Increases AR transcription factor activity (By similarity). Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 149/269 (55%), Gaps = 17/269 (6%)

Query: 52  EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
           +ES  +  S+  L K + +      GC HY R C+++   C+E + CRHCHN+A +    
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---- 171

Query: 107 DQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHC 166
                H + R  V  ++C +C   Q   Q C  C  CMG Y+C  CKL+DDD +K  YHC
Sbjct: 172 -----HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHC 226

Query: 167 DGCGICRIGG--CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVI 224
           D CGICRIG    D++FHC  C  C  + + N+H C+E +   +CP+C EY+F +R+ VI
Sbjct: 227 DDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVI 286

Query: 225 VLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 284
            L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      
Sbjct: 287 FLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWIST 345

Query: 285 ILCNDCGKTSNVQFHVLAQKCPNCKSYNT 313
           I CNDC    + ++H L  KC +C SYNT
Sbjct: 346 IRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 261
           E  +H  C VC E  F+ R ++ + PC H  H+ CL +  E  +  CP+C+  V  ++++
Sbjct: 71  ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLVKWLEVRK-VCPLCNMPVLQLAQL 128

Query: 262 WEKYDREIAATPMPEA 277
             K DR     P+P A
Sbjct: 129 HSKQDRGPPQEPLPGA 144

May play a role in TRPCs intracellular trafficking.

Mus musculus (taxid: 10090)

>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 261
           E  +H  C VC E  F+ R ++ + PC H  H+ CL +  E  +  CP+C+  V  ++++
Sbjct: 71  ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 128

Query: 262 WEKYDREIAATPMPEA 277
             K DR     P+P A
Sbjct: 129 HSKQDRGPPQGPLPGA 144

May play a role in TRPCs intracellular trafficking.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
224092372	300	predicted protein [Populus trichocarpa]	0.858	0.91	0.813	1e-130
356563813	308	PREDICTED: RING finger and CHY zinc fing	0.968	1.0	0.724	1e-128
225430120	315	PREDICTED: RING finger and CHY zinc fing	0.974	0.984	0.723	1e-128
356552549	308	PREDICTED: RING finger and CHY zinc fing	0.968	1.0	0.733	1e-128
296081945	294	unnamed protein product [Vitis vinifera]	0.864	0.935	0.794	1e-127
356515508	309	PREDICTED: RING finger and CHY zinc fing	0.959	0.987	0.707	1e-125
356552551	323	PREDICTED: RING finger and CHY zinc fing	0.968	0.953	0.699	1e-125
255635979	309	unknown [Glycine max]	0.959	0.987	0.703	1e-124
449437104	307	PREDICTED: RING finger and CHY zinc fing	0.933	0.967	0.711	1e-123
297808579	308	zinc finger family protein [Arabidopsis	0.861	0.889	0.759	1e-121

>gi|224092372|ref|XP_002309580.1| predicted protein [Populus trichocarpa] gi|118485648|gb|ABK94674.1| unknown [Populus trichocarpa] gi|222855556|gb|EEE93103.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/274 (81%), Positives = 247/274 (90%), Gaps = 1/274 (0%)

Query: 45  DREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI 104
           + +F+ +EES N   + ++L KG MEYGC HYRRRCRIRAPCCNE+FDCRHCHNEA NNI
Sbjct: 28  NEDFIFSEESMNVE-TPQILDKGLMEYGCLHYRRRCRIRAPCCNEVFDCRHCHNEAKNNI 86

Query: 105 NVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQY 164
           NVDQK RHD+PRHEV QVICSLCGTEQ+VQQVC+NCGVCMG+YFCE+CKLFDDDTSKKQY
Sbjct: 87  NVDQKHRHDMPRHEVKQVICSLCGTEQEVQQVCINCGVCMGKYFCETCKLFDDDTSKKQY 146

Query: 165 HCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVI 224
           HCDGCGICRIGG +NFFHC KC CCYS LLKNSHPCVEGAMHHDCPVC E+LFE+R DV 
Sbjct: 147 HCDGCGICRIGGPENFFHCYKCGCCYSNLLKNSHPCVEGAMHHDCPVCFEFLFESRYDVT 206

Query: 225 VLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 284
           VLPCGHTIH++CLKEMR+H+QYACP+CSKSVCDMSKVWEK+D EIAATPMPE YLNK VW
Sbjct: 207 VLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYLNKMVW 266

Query: 285 ILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 318
           ILCNDCGK+S VQFHV+AQKC NCKSYNTR TR 
Sbjct: 267 ILCNDCGKSSEVQFHVVAQKCMNCKSYNTRQTRS 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563813|ref|XP_003550153.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/308 (72%), Positives = 249/308 (80%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    S    E    P  S++       + +ST+H    +L  +G+
Sbjct: 1   MGEVAVMHSEPLQFECNDISVNMTEKEVYPPESNVERLPGEESSQSTDHKNINDLQERGY 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+DQK RHDIPRH+V QVICSLCG
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCG 120

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 188
           TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC KC C
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGC 180

Query: 189 CYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYAC 248
           CYS LLKNSHPCVEGAMHHDCPVC EYLFE+R DV V+PCGHTIHK+CL EMREH QY+C
Sbjct: 181 CYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYSC 240

Query: 249 PICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNC 308
           P+C KSVCDMSKVWEK+D EIAATPMPE Y NK VWILCNDCGKTS+VQFH +AQKCPNC
Sbjct: 241 PLCLKSVCDMSKVWEKFDIEIAATPMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNC 300

Query: 309 KSYNTRLT 316
           KSYNTR T
Sbjct: 301 KSYNTRQT 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430120|ref|XP_002284652.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera] gi|147785653|emb|CAN68688.1| hypothetical protein VITISV_029477 [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/315 (72%), Positives = 256/315 (81%), Gaps = 5/315 (1%)

Query: 9   MAGLEVHHSSHQQFEPMSTS---CKADEIFSTPSYSHLADREFLVTEESTNHNGSTE--L 63
           M  +  +HS  Q FE  +        +E     S +  ++ E +  +E T+H   TE  L
Sbjct: 1   MTEMMANHSDSQHFELKNLKEMIFNVNERDVVKSCAQHSNGECMEIKEPTDHVEITEKEL 60

Query: 64  LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVI 123
           L KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA N+I VD+  RHDIPRH+V QVI
Sbjct: 61  LEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIKVDKAQRHDIPRHQVQQVI 120

Query: 124 CSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHC 183
           CSLC TEQ+V+QVC+NCGVCMG+YFCE+CKLFDDDTSKKQYHC+GCGICRIGG +NFFHC
Sbjct: 121 CSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCNGCGICRIGGRENFFHC 180

Query: 184 NKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH 243
            KCRCCYS+LLKNSHPCVEGAMHHDCPVC EYLFE+  DV V+PCGHTIH+NCLKEMREH
Sbjct: 181 YKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESTDDVTVMPCGHTIHQNCLKEMREH 240

Query: 244 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQ 303
            QYACP+CSKSVCDMSKVWEK+D EIAA PMPE Y NK VWILCNDCGKTS V FHVLAQ
Sbjct: 241 LQYACPLCSKSVCDMSKVWEKFDMEIAAIPMPEPYQNKMVWILCNDCGKTSKVHFHVLAQ 300

Query: 304 KCPNCKSYNTRLTRG 318
           KC NCKSYNTR TRG
Sbjct: 301 KCLNCKSYNTRQTRG 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552549|ref|XP_003544629.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 1 [Glycine max]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/308 (73%), Positives = 248/308 (80%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV QVICSLCG
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVICSLCG 120

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 188
           TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GG +NFFHC KC C
Sbjct: 121 TEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICRTGGSENFFHCYKCGC 180

Query: 189 CYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYAC 248
           CYS LLKNSHPCVEGAMHHDCPVC EYLFE+R DV V+PCGHTIHK+CL EMREH QYAC
Sbjct: 181 CYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFQYAC 240

Query: 249 PICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNC 308
           P+CSKSVCDMSKVWEK+D EIAAT MPE Y NK VWILCNDCGKTS+VQFH +AQKCPNC
Sbjct: 241 PLCSKSVCDMSKVWEKFDLEIAATRMPEQYQNKMVWILCNDCGKTSHVQFHFVAQKCPNC 300

Query: 309 KSYNTRLT 316
           KSYNTR T
Sbjct: 301 KSYNTRQT 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081945|emb|CBI20950.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/277 (79%), Positives = 243/277 (87%), Gaps = 2/277 (0%)

Query: 44  ADREFLVTEESTNHNGSTE--LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAM 101
           ++ E +  +E T+H   TE  LL KG+M+YGC HYRRRCRIRAPCCNEIFDCRHCHNEA 
Sbjct: 18  SNGECMEIKEPTDHVEITEKELLEKGYMQYGCPHYRRRCRIRAPCCNEIFDCRHCHNEAK 77

Query: 102 NNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSK 161
           N+I VD+  RHDIPRH+V QVICSLC TEQ+V+QVC+NCGVCMG+YFCE+CKLFDDDTSK
Sbjct: 78  NSIKVDKAQRHDIPRHQVQQVICSLCNTEQEVRQVCINCGVCMGKYFCETCKLFDDDTSK 137

Query: 162 KQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQ 221
           KQYHC+GCGICRIGG +NFFHC KCRCCYS+LLKNSHPCVEGAMHHDCPVC EYLFE+  
Sbjct: 138 KQYHCNGCGICRIGGRENFFHCYKCRCCYSVLLKNSHPCVEGAMHHDCPVCFEYLFESTD 197

Query: 222 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNK 281
           DV V+PCGHTIH+NCLKEMREH QYACP+CSKSVCDMSKVWEK+D EIAA PMPE Y NK
Sbjct: 198 DVTVMPCGHTIHQNCLKEMREHLQYACPLCSKSVCDMSKVWEKFDMEIAAIPMPEPYQNK 257

Query: 282 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 318
            VWILCNDCGKTS V FHVLAQKC NCKSYNTR TRG
Sbjct: 258 MVWILCNDCGKTSKVHFHVLAQKCLNCKSYNTRQTRG 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515508|ref|XP_003526442.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/314 (70%), Positives = 253/314 (80%), Gaps = 9/314 (2%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 184
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GGC+NFFHC+
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCH 175

Query: 185 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH 244
           KC CCYS  LKNSHPCVEGAMHHDCP+C EYLFE+  DV VL CGHTIHK+CLKEMREH 
Sbjct: 176 KCGCCYSTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHF 235

Query: 245 QYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQK 304
           QYACP+C KSVCDMSKVWEK+D EIAATPMPE Y NK VWILCNDCGK+S+VQFH++AQK
Sbjct: 236 QYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQK 295

Query: 305 CPNCKSYNTRLTRG 318
           C NCKSYNTR TRG
Sbjct: 296 CLNCKSYNTRETRG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552551|ref|XP_003544630.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform 2 [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/323 (69%), Positives = 248/323 (76%), Gaps = 15/323 (4%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGF 68
           M  + V HS   QFE    +    E    P  S++       + +ST+H     L  KGF
Sbjct: 1   MGEVAVMHSEPLQFECNDITVNMTEKEVYPPESNVDHLPGEESSQSTDHKNINYLQEKGF 60

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEV--------- 119
           MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEA N+IN+D KLRHDIPRHEV         
Sbjct: 61  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDLKLRHDIPRHEVKQVCLFILT 120

Query: 120 ------NQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICR 173
                  QVICSLCGTEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR
Sbjct: 121 FPIGISTQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCCGCGICR 180

Query: 174 IGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIH 233
            GG +NFFHC KC CCYS LLKNSHPCVEGAMHHDCPVC EYLFE+R DV V+PCGHTIH
Sbjct: 181 TGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTIH 240

Query: 234 KNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKT 293
           K+CL EMREH QYACP+CSKSVCDMSKVWEK+D EIAAT MPE Y NK VWILCNDCGKT
Sbjct: 241 KSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATRMPEQYQNKMVWILCNDCGKT 300

Query: 294 SNVQFHVLAQKCPNCKSYNTRLT 316
           S+VQFH +AQKCPNCKSYNTR T
Sbjct: 301 SHVQFHFVAQKCPNCKSYNTRQT 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635979|gb|ACU18335.1| unknown [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/314 (70%), Positives = 252/314 (80%), Gaps = 9/314 (2%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCK-ADEIFSTPSYSHLADREFLVTEEST---NHNGSTELL 64
           M  + V HS     EP+   C     I     Y+ L++ E ++ EES+   N     +L 
Sbjct: 1   MGEVAVMHS-----EPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLR 55

Query: 65  RKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVIC 124
            +G+M+YGCQHYRRRCRIRAPCC+EIFDCRHCHNEA NNIN+DQK RHDIPRH+V QVIC
Sbjct: 56  ERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVIC 115

Query: 125 SLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCN 184
           SLC TEQ+VQQ C+NCGVCMG+YFC +CKLFDDD SK+QYHC GCGICR GGC+NFFHC+
Sbjct: 116 SLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCH 175

Query: 185 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH 244
           KC CCYS  LKNSHPCVE AMHHDCP+C EYLFE+  DV VL CGHTIHK+CLKEMREH 
Sbjct: 176 KCGCCYSTQLKNSHPCVERAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHF 235

Query: 245 QYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQK 304
           QYACP+C KSVCDMSKVWEK+D EIAATPMPE Y NK VWILCNDCGK+S+VQFH++AQK
Sbjct: 236 QYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQK 295

Query: 305 CPNCKSYNTRLTRG 318
           C NCKSYNTR TRG
Sbjct: 296 CLNCKSYNTRETRG 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437104|ref|XP_004136332.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis sativus] gi|449505475|ref|XP_004162482.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/308 (71%), Positives = 255/308 (82%), Gaps = 11/308 (3%)

Query: 17  SSHQQFEPMST------SCKADEIFSTPSYSHLADREFLVTEESTNHNGSTELLRKGFME 70
           +++ + +P+ T      +C+  EI +   Y+   D   L  E+S   N   ++L + +M+
Sbjct: 5   ATYSKPQPIGTEENQHMTCRGKEIRTV--YTEQFDSPALPFEKS---NDPQKVLEREYMQ 59

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
           +GC HYRRRCRIRAPCCNEIFDCRHCHNE  N+I VDQK RH+IPRHEVNQVICSLCGTE
Sbjct: 60  HGCAHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTE 119

Query: 131 QKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCY 190
           Q+V+Q C+NCGVC G+YFCESCKLFDDDTSKKQYHC+GCGICRIGG +NFFHC+KC CCY
Sbjct: 120 QEVRQDCINCGVCFGKYFCESCKLFDDDTSKKQYHCNGCGICRIGGRENFFHCHKCGCCY 179

Query: 191 SMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPI 250
           S+LLKNSHPCVEGAMHHDCPVC EYLF++  DV V+PCGHTIH+NCLKEMR+H QYACP+
Sbjct: 180 SILLKNSHPCVEGAMHHDCPVCFEYLFDSTNDVTVMPCGHTIHQNCLKEMRDHFQYACPL 239

Query: 251 CSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKS 310
           CSKSVCDMSKVWEK D EIAATP+PE Y NK VWILCNDCGKTS VQ+HV+AQKC NCKS
Sbjct: 240 CSKSVCDMSKVWEKIDMEIAATPIPEPYQNKMVWILCNDCGKTSKVQYHVVAQKCLNCKS 299

Query: 311 YNTRLTRG 318
           YNTR TRG
Sbjct: 300 YNTRQTRG 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808579|ref|XP_002872173.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318010|gb|EFH48432.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/274 (75%), Positives = 235/274 (85%)

Query: 45  DREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI 104
           D E    E  T  +   ++L +G ME+GC HYRRRC IRAPCCNEIF C HCHNEA NNI
Sbjct: 35  DSESSTLERVTAESLINKVLGRGLMEHGCPHYRRRCCIRAPCCNEIFGCHHCHNEAKNNI 94

Query: 105 NVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQY 164
           NVDQK RHDIPRH+V QVIC LCGTEQ+V Q+C++CGVCMG+YFC+ CKLFDDDTSKKQY
Sbjct: 95  NVDQKQRHDIPRHQVEQVICLLCGTEQEVGQICIHCGVCMGKYFCKVCKLFDDDTSKKQY 154

Query: 165 HCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVI 224
           HCDGCGICRIGG +NFFHC KC CCYS+LLKNSHPCVEGAMHHDCP+C E+LFE+R DV 
Sbjct: 155 HCDGCGICRIGGRENFFHCYKCGCCYSILLKNSHPCVEGAMHHDCPICFEFLFESRNDVT 214

Query: 225 VLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 284
           VLPCGHTIH+ CL+EMR+H+QYACP+CSKSVCDMSKVWEK+D EIAATPMPE Y N+ V 
Sbjct: 215 VLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQ 274

Query: 285 ILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 318
           ILCNDCGK S V++HV+AQKCPNCKSYNTR TRG
Sbjct: 275 ILCNDCGKKSEVKYHVVAQKCPNCKSYNTRQTRG 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2172656	291	AT5G22920 [Arabidopsis thalian	0.836	0.914	0.602	1.9e-99
TAIR|locus:2179474	328	AT5G25560 [Arabidopsis thalian	0.842	0.817	0.635	1e-98
TAIR|locus:2180074	267	MIEL1 "MYB30-Interacting E3 Li	0.783	0.932	0.555	9.1e-84
TAIR|locus:2099212	287	AT3G62970 [Arabidopsis thalian	0.773	0.857	0.524	1e-75
UNIPROTKB|Q96PM5	261	RCHY1 "RING finger and CHY zin	0.738	0.900	0.429	1.2e-56
UNIPROTKB|J9NZR5	259	RCHY1 "Uncharacterized protein	0.723	0.888	0.433	1.6e-56
UNIPROTKB|A4IFE2	261	RCHY1 "RCHY1 protein" [Bos tau	0.723	0.881	0.433	2e-56
RGD|1359180	261	Rchy1 "ring finger and CHY zin	0.738	0.900	0.425	3.3e-56
MGI|MGI:1915348	261	Rchy1 "ring finger and CHY zin	0.738	0.900	0.421	1.1e-55
ZFIN|ZDB-GENE-040801-73	264	rchy1 "ring finger and CHY zin	0.726	0.875	0.425	1.4e-55

TAIR|locus:2172656 AT5G22920 [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 161/267 (60%), Positives = 202/267 (75%)

Query:    53 ESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRH 112
             E+  +     L+  G   YGC HYRRRC+IRAPCC+EIFDCRHCHNEA ++++++Q  RH
Sbjct:     7 ENEQNQEFANLMEIGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEAKDSLHIEQHHRH 66

Query:   113 DIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXX 172
             ++PRHEV++VICSLC TEQ VQQ C NCGVCMG+YFC  CK FDDD SKKQYH       
Sbjct:    67 ELPRHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGIC 126

Query:   173 XXXXXXNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTI 232
                   NFFHC +CRCCYS ++++ H CVEGAMHH+CPVC EYLF++ +D+ VL CGHT+
Sbjct:   127 RTGGEENFFHCKRCRCCYSKIMEDKHQCVEGAMHHNCPVCFEYLFDSTRDITVLRCGHTM 186

Query:   233 HKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGK 292
             H  C K+M  H++Y CP+CSKS+CDMS +W+K D E+AA PMP+ Y NK VWILCNDCG 
Sbjct:   187 HLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGS 246

Query:   293 TSNVQFHVLAQKCPNCKSYNTRLT-RG 318
              +NV+FH++A KC +C SYNTR T RG
Sbjct:   247 NTNVRFHLIAHKCSSCGSYNTRQTQRG 273

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2179474 AT5G25560 [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 178/280 (63%), Positives = 208/280 (74%)

Query:     9 MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTE-----L 63
             M  +  +H + QQ + MS   K +   S  S+ H  + E   +E ST    + E     +
Sbjct:     1 MGDVYFNHFA-QQLQ-MSDQEKGE--MSRHSHPHSINEE---SESSTLERVAAESLTNKV 53

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVI 123
             L +G MEYGC HYRRRC IRAPCCNEIF C HCH EA NNINVDQK RHDIPRH+V QVI
Sbjct:    54 LDRGLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVI 113

Query:   124 CSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHC 183
             C LCGTEQ+V Q+C++CGVCMG+YFC+ CKL+DDDTSKKQYH             NFFHC
Sbjct:   114 CLLCGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHC 173

Query:   184 NKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH 243
              KC CCYS+LLKN HPCVEGAMHHDCP+C E+LFE+R DV VLPCGHTIH+ CL+EMR+H
Sbjct:   174 YKCGCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDH 233

Query:   244 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKV 283
             +QYACP+CSKSVCDMSKVWEK+D EIAATPMPE Y N+ V
Sbjct:   234 YQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMV 273

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2180074 MIEL1 "MYB30-Interacting E3 Ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 140/252 (55%), Positives = 178/252 (70%)

Query:    64 LRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNI-NVDQKLRHDIPRHEVNQV 122
             L  G M +GC+HY+RRC+IRAPCCNE+FDCRHCHNE+ + + N+    RHD+ R +V QV
Sbjct:     9 LHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLRNIYD--RHDLVRQDVKQV 66

Query:   123 ICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFH 182
             ICS+C TEQ   QVC NCGV MGEYFC  C  +DDDT K+Q+H             NFFH
Sbjct:    67 ICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCGICRVGGRENFFH 126

Query:   183 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE 242
             C KC  CY++ L+N+H CVE +M H CP+C EYLF++ +D  V+ CGHT+H  C  EM +
Sbjct:   127 CKKCGSCYAVGLRNNHRCVENSMRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIK 186

Query:   243 HHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLA 302
               ++ CPICS+SV DMSK W++ D EI AT MP  Y +KKVWILCNDC  T+ V FH++ 
Sbjct:   187 RDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIG 246

Query:   303 QKCPNCKSYNTR 314
             QKC +C+SYNTR
Sbjct:   247 QKCGHCRSYNTR 258

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 130/248 (52%), Positives = 167/248 (67%)

Query:    67 GFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSL 126
             G  ++GC+HY+RRC+IRAPCCN IF CRHCHN++ N++  D K RHD+ R  V QV+CS+
Sbjct:    29 GKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSLP-DPKERHDLVRQNVKQVVCSI 87

Query:   127 CGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKC 186
             C TEQ+V +VC NCGV MGEYFC+ CK FDDD SK+Q+H              FFHC  C
Sbjct:    88 CQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHCDDCGICRVGGRDKFFHCQNC 147

Query:   187 RCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQY 246
               CY M L++ H C+E +  + CPVC EYLF++ +   V+ CGHT+H +C ++M   +QY
Sbjct:   148 GACYGMGLRDKHSCIENSTKNSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQY 207

Query:   247 ACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCP 306
              CPIC+KS+ DMS  W   D EI+AT MP  Y   +V ILCNDC K S   FH+L  KC 
Sbjct:   208 RCPICAKSMVDMSPSWHLLDFEISATEMPVEY-KFEVSILCNDCNKGSKAMFHILGHKCS 266

Query:   307 NCKSYNTR 314
             +C SYNTR
Sbjct:   267 DCGSYNTR 274

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 106/247 (42%), Positives = 138/247 (55%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
             M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C
Sbjct:   128 MNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLC 186

Query:   252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
               S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SY
Sbjct:   187 MHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESY 246

Query:   312 NTRLTRG 318
             NT    G
Sbjct:   247 NTAQAGG 253

GO:0005102 "receptor binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0002039 "p53 binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 105/242 (43%), Positives = 137/242 (56%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C  C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQSCEECSTLFGEYYCSICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
             M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C
Sbjct:   128 MNLQGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLC 186

Query:   252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
               S  DM++ W + D E+A TPMP  Y N  V ILCNDC + S VQFH+L  KC  C+SY
Sbjct:   187 MHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNRRSTVQFHILGMKCNICESY 246

Query:   312 NT 313
             NT
Sbjct:   247 NT 248

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 105/242 (43%), Positives = 137/242 (56%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRGCLLKAPCCDKLYTCRLCHDN-----NED----HQLDRFKVKEVQCINCEKIQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C  C    GEY+C  C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEECSTLFGEYYCSVCHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
             M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C ++M +   Y CP+C
Sbjct:   128 MNLQGKHKCIENVSRQNCPICLEDIHTSRIAAQVLPCGHLLHRTCYEDMLKEG-YRCPLC 186

Query:   252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
              +S  DMS+ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SY
Sbjct:   187 MRSALDMSRSWRQRDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESY 246

Query:   312 NT 313
             NT
Sbjct:   247 NT 248

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 105/247 (42%), Positives = 135/247 (54%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRACLLKAPCCDKLYTCRLCH---------DTHEDHQLDRFKVKEVQCINCEKLQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C +C    GEY+C  C LFD D  KKQYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEDCSTLFGEYYCSICHLFDKD--KKQYHCESCGICRIGPKEDFFHCLKCNLCLA 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
             M L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C
Sbjct:   128 MTLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLC 186

Query:   252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
               S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SY
Sbjct:   187 MHSALDMTRYWRQLDIEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSY 246

Query:   312 NTRLTRG 318
             NT    G
Sbjct:   247 NTAQAGG 253

GO:0000151 "ubiquitin ligase complex" evidence=IEA;ISO

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0051865 "protein autoubiquitination" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 104/247 (42%), Positives = 136/247 (55%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC++++ CR CH+      N D    H + R +V +V C  C   Q
Sbjct:    19 GCEHYDRACLLKAPCCDKLYTCRLCHDT-----NED----HQLDRFKVKEVQCINCEKLQ 69

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
               QQ C +C    GEY+C  C LFD D  K+QYH             +FFHC KC  C +
Sbjct:    70 HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
               L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C
Sbjct:   128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLC 186

Query:   252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
               S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SY
Sbjct:   187 MHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSY 246

Query:   312 NTRLTRG 318
             NT    G
Sbjct:   247 NTAQAGG 253

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0002039 "p53 binding" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=ISO

ZFIN|ZDB-GENE-040801-73 rchy1 "ring finger and CHY zinc finger domain containing 1" [Danio rerio (taxid:7955)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 103/242 (42%), Positives = 134/242 (55%)

Query:    72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
             GC+HY R C ++APCC + + CR CH         D +  H + R +V +V C++C T Q
Sbjct:     7 GCEHYVRSCLLKAPCCGKFYVCRLCH---------DAEETHQMDRFKVQEVKCAVCNTIQ 57

Query:   132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
             + QQ+C  C V  GEY+C+ C LFD D  KKQYH              +FHC KC  C  
Sbjct:    58 EAQQICKECEVKFGEYYCDICHLFDKD--KKQYHCQPCGICRIGPREKYFHCTKCNLCLG 115

Query:   192 MLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
               LK+ H CVE     +CPVC E +   R    VLPCGH +H  C  +M +   Y CP+C
Sbjct:   116 TELKDKHKCVENVSRQNCPVCMEDIHTFRVGAHVLPCGHLLHGTCFDDMLKTGAYRCPLC 175

Query:   252 SKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSY 311
               S  +M + W++ D EI+ TPMP  Y +  V I+CNDC   S V FHVL  KC +C SY
Sbjct:   176 MHSAFNMKEYWKQMDEEISQTPMPTEYQDSTVKIICNDCQARSTVSFHVLGMKCSSCGSY 235

Query:   312 NT 313
             NT
Sbjct:   236 NT 237

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
pfam05495	74	pfam05495, zf-CHY, CHY zinc finger	3e-18
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	9e-05
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	9e-05
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-04
smart00184	40	smart00184, RING, Ring finger	5e-04
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	0.002

>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger

 Score = 77.0 bits (190), Expect = 3e-18
 Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 12/85 (14%)

Query: 73  CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           C+HY R  C IRAPCCN+ + CR CH+E  +         H + R  V  V+C +C TEQ
Sbjct: 1   CKHYHRNLCAIRAPCCNKYYPCRLCHDELED---------HPLDRWNVKAVLCGVCRTEQ 51

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFD 156
            VQ+   NCGV   +Y+C  CKLF 
Sbjct: 52  TVQE--YNCGVEFADYYCPICKLFF 74

This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes. Length = 74

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
           +CP+C E     R+ V++LPCGH   ++C+ +  +  +  CP+C   +
Sbjct: 1   ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 254
            +CP+C +  FE  ++V+VLPCGH  HK CL +        CP+C   
Sbjct: 1   DECPICLDE-FEPGEEVVVLPCGHVFHKECLDKWLRSS-NTCPLCRAP 46

Length = 46

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 200 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC-DM 258
           C++   H D       L  T +    LPCGH +H +CLK   E  Q  CPIC + V  D 
Sbjct: 293 CMDEMFHPDHEPLPRGLDMTPKR---LPCGHILHLHCLKNWLERQQ-TCPICRRPVIFDQ 348

Query: 259 SK 260
           S 
Sbjct: 349 SS 350

Length = 491

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
           +C +C    F     + VLPC H  H  C+ +    +   CP+C  ++
Sbjct: 325 ECAICMSN-FIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
           CP+C E   +   D ++LPCGHT  ++C+++  E     CPIC
Sbjct: 1   CPICLEEYLK---DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEM-REHHQYACPI 250
           CP+  E + +     ++LPCGH   +  L+++ +   ++ CP 
Sbjct: 13  CPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG1940	276	consensus Zn-finger protein [General function pred	100.0
PF14599	61	zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.	99.93
PF05495	71	zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc	99.88
COG4357	105	Zinc finger domain containing protein (CHY type) [	99.35
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.26
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.11
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.93
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.91
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.87
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.78
PHA02929	238	N1R/p28-like protein; Provisional	98.7
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.69
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.67
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.65
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.63
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.58
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.57
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.55
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.51
PF14634	44	zf-RING_5: zinc-RING finger domain	98.51
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.45
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.41
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.37
PHA02926	242	zinc finger-like protein; Provisional	98.24
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.12
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.03
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.9
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.77
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.77
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.72
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.7
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.56
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.49
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.49
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.44
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.23
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.94
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.92
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.77
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.55
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.36
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.36
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.36
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.27
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	96.21
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.1
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.98
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.9
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.8
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.22
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.87
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	94.81
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.73
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.71
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.65
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.3
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.26
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	94.23
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.93
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.07
KOG4739	233	consensus Uncharacterized protein involved in syna	92.73
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	92.69
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.58
KOG0297	391	consensus TNF receptor-associated factor [Signal t	92.57
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.57
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.2
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	91.8
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	91.78
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.53
KOG3002	299	consensus Zn finger protein [General function pred	91.45
PF04641	260	Rtf2: Rtf2 RING-finger	91.36
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	90.99
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.79
PF12773	50	DZR: Double zinc ribbon	90.78
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	90.72
TIGR00100	115	hypA hydrogenase nickel insertion protein HypA. In	90.7
KOG4445	368	consensus Uncharacterized conserved protein, conta	90.66
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	90.59
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	90.19
PRK00564	117	hypA hydrogenase nickel incorporation protein; Pro	89.67
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	89.27
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	88.81
COG5152	259	Uncharacterized conserved protein, contains RING a	88.62
PHA02862	156	5L protein; Provisional	88.52
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	88.38
PRK12380	113	hydrogenase nickel incorporation protein HybF; Pro	88.36
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.99
PRK03681	114	hypA hydrogenase nickel incorporation protein; Val	87.97
KOG3039	303	consensus Uncharacterized conserved protein [Funct	87.91
PHA02825	162	LAP/PHD finger-like protein; Provisional	87.48
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	86.91
KOG1002	791	consensus Nucleotide excision repair protein RAD16	85.99
PF13248	26	zf-ribbon_3: zinc-ribbon domain	85.98
PF01155	113	HypA: Hydrogenase expression/synthesis hypA family	85.85
KOG2660	331	consensus Locus-specific chromosome binding protei	85.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.37
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	85.35
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.77
PRK04023	1121	DNA polymerase II large subunit; Validated	84.69
PRK00762	124	hypA hydrogenase nickel incorporation protein; Pro	83.06
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.36
COG0375	115	HybF Zn finger protein HypA/HybF (possibly regulat	81.04
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	80.07

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=100.00  E-value=5.2e-67  Score=492.39  Aligned_cols=249  Identities=51%  Similarity=1.047  Sum_probs=241.0

Q ss_pred             cCCCchhhccCCCccCCccccccceeEcCCCCCeecCcchHhhhhcCCCcCccCCCCCCCccCceeecCCCCcccccccc
Q 021060           57 HNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQV  136 (318)
Q Consensus        57 ~~~~~~~~~~~~~~~gC~HY~R~c~i~~pCC~~~y~Cr~CHde~~~~~~~~~~~~H~ldR~~v~~v~C~~C~~eQ~v~~~  136 (318)
                      +..+.+++|++.+++||+||+|++++++|+|++||+||+||+++.         +|+++|+.|.+|+|+.|.++|+++++
T Consensus        19 ~~~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~---------~h~~~r~~v~~~~C~~C~~~q~~~~~   89 (276)
T KOG1940|consen   19 SSIHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESE---------DHDLDRKTVYELLCMKCRKIQPVGQI   89 (276)
T ss_pred             hhcccccccccccccCCchhhhccccccccccceeeeEEecChhh---------hcccchhhhhhhhhhhHHhhhhhhhc
Confidence            333457889999999999999999999999999999999999975         89999999999999999999999999


Q ss_pred             CcCCCCccceEecCccccccCCCCCCeeecCCCCceeecCCcceeeccCccceeeccccccccccCCCCCCCCccccccc
Q 021060          137 CVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYL  216 (318)
Q Consensus       137 C~~Cg~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~Cie~~~~~~CpIClE~l  216 (318)
                      |.+|+..||+|||.+|+||||+++ +||||++|||||+|++++||||++|+.|++..+.+.|+|+|++++.+||||.|+|
T Consensus        90 c~~c~~~~g~~~c~~C~l~dd~~~-~~~hC~~C~icr~g~~~~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l  168 (276)
T KOG1940|consen   90 CSNCHVELGEYYCLICKLFDDDPS-KQYHCDLCGICREGLGLDFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYL  168 (276)
T ss_pred             cccchhhhhhhcCccccccccccc-ceeccccccccccccccchhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHh
Confidence            999999999999999999999998 9999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCccc
Q 021060          217 FETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNV  296 (318)
Q Consensus       217 f~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~IlCnDC~~~s~v  296 (318)
                      |++...+..|+|||++|..|++++...+ |+||+|.+ +.||..+|+++|.+|+++|||++|.+++++|+||||+..+++
T Consensus       169 ~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~-~~d~~~~~~~~d~~l~~~~~p~~y~~~~~~i~cndC~~~~~~  246 (276)
T KOG1940|consen  169 FLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK-PGDMSHYFRKLDKELAGSPMPEEYKNKTQDILCNDCGSGTNV  246 (276)
T ss_pred             ccccccCCccCcccchHHHHHHHHhccC-CCCCcccc-hHHHHHHHHHHHHHHhcCCCCchhhchhheeeccCCCCCCcc
Confidence            9999999999999999999999998866 99999999 999999999999999999999999999999999999999999


Q ss_pred             cceeeeccCCCCCCccccccC
Q 021060          297 QFHVLAQKCPNCKSYNTRLTR  317 (318)
Q Consensus       297 ~~H~lg~KC~~C~SyNT~~~~  317 (318)
                      +||||++||+.|+|||||+++
T Consensus       247 k~~~l~~kc~~c~~~~~r~~~  267 (276)
T KOG1940|consen  247 KYHILYHKCGKCGSYNTRMIS  267 (276)
T ss_pred             ceehhhhhCCCcccceeeecc
Confidence            999999999999999999985

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A

Probab=99.93  E-value=1.1e-27  Score=180.11  Aligned_cols=61  Identities=66%  Similarity=1.160  Sum_probs=22.6

Q ss_pred             cCchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCccccceeeeccCCCCCCccccc
Q 021060          255 VCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRL  315 (318)
Q Consensus       255 ~~d~~~~~~~lD~~i~~~pmPeey~~~~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~  315 (318)
                      +.||+.+|+.||++|+++|||++|++++++|+||||+++|+|+||||||||++|+||||||
T Consensus         1 v~dM~~~w~~LD~~i~~~pmP~~Y~~~~v~IlCNDC~~~s~v~fH~lg~KC~~C~SYNT~q   61 (61)
T PF14599_consen    1 VVDMSAYWRMLDAEIAATPMPEEYRNKKVWILCNDCNAKSEVPFHFLGHKCSHCGSYNTRQ   61 (61)
T ss_dssp             ---------------------------EEEEEESSS--EEEEE--TT----TTTS---EEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHhCCEEEEECCCCCCccceeeeHhhhcCCCCCCcccCC
Confidence            4689999999999999999999999999999999999999999999999999999999997

>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.88  E-value=1e-23  Score=162.72  Aligned_cols=70  Identities=46%  Similarity=1.129  Sum_probs=53.6

Q ss_pred             Ccccccc-ceeEcCCCCCeecCcchHhhhhcCCCcCccCCCCCCCccCceeecCCCCccccccccCcCCCCccceEecCc
Q 021060           73 CQHYRRR-CRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCES  151 (318)
Q Consensus        73 C~HY~R~-c~i~~pCC~~~y~Cr~CHde~~~~~~~~~~~~H~ldR~~v~~v~C~~C~~eQ~v~~~C~~Cg~~f~~YfC~~  151 (318)
                      |+||+|+ |+|+||||++|||||+||||++         +|+++|+++++|+||.|+++|+++++  +|+   |+|+|++
T Consensus         1 C~HY~~~~~~~~~~cC~~~y~C~~CHde~~---------~H~~~~~~~~~v~Cg~C~~~~~~~~~--~c~---~~~~C~~   66 (71)
T PF05495_consen    1 CKHYHRSLCAIRFPCCGKYYPCRFCHDELE---------DHPFDRWPVKRVICGKCRTEQPIDEY--SCG---ADYFCPI   66 (71)
T ss_dssp             -SS---S-EEEEETTTTEEESSHHHHHHCS---------SS---TTT--EEEETTT--EEES-SB--TT-----SEEETT
T ss_pred             CCCCCCCcEEEECCcccCeecHHHHHHHhc---------cCccccccccCeECCCCCCccChhhh--hcC---CCccCcC
Confidence            8999999 9999999999999999999975         79999999999999999999999988  888   9999999


Q ss_pred             ccccc
Q 021060          152 CKLFD  156 (318)
Q Consensus       152 Ckl~d  156 (318)
                      |++||
T Consensus        67 C~~~~   71 (71)
T PF05495_consen   67 CGLYF   71 (71)
T ss_dssp             TTEEE
T ss_pred             cCCCC
Confidence            99986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.

>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]

Probab=99.35  E-value=2e-13  Score=110.95  Aligned_cols=67  Identities=24%  Similarity=0.647  Sum_probs=57.3

Q ss_pred             cCCccccc---cceeEcCCCCCeecCcchHhhhhcCCCcCccCCCCCCCc-----cCceeecCCCCcccccc-----ccC
Q 021060           71 YGCQHYRR---RCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRH-----EVNQVICSLCGTEQKVQ-----QVC  137 (318)
Q Consensus        71 ~gC~HY~R---~c~i~~pCC~~~y~Cr~CHde~~~~~~~~~~~~H~ldR~-----~v~~v~C~~C~~eQ~v~-----~~C  137 (318)
                      .+|.||++   .++|||.+|++||+|++||||++         +||+.++     ..+.|+||+|.++..++     ..|
T Consensus        13 tRC~Hyht~~Diialkc~~C~kyYaCy~CHdel~---------~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~C   83 (105)
T COG4357          13 TRCLHYHTPLDIIALKCKCCQKYYACYHCHDELE---------DHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSC   83 (105)
T ss_pred             ceeeEecCccceEeeeechhhhhhhHHHHHhHHh---------cCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCC
Confidence            58999999   68999999999999999999987         5776544     45669999999998775     459


Q ss_pred             cCCCCccce
Q 021060          138 VNCGVCMGE  146 (318)
Q Consensus       138 ~~Cg~~f~~  146 (318)
                      ++|..+|+.
T Consensus        84 p~C~spFNp   92 (105)
T COG4357          84 PYCQSPFNP   92 (105)
T ss_pred             CCcCCCCCc
Confidence            999999973

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.26  E-value=1.4e-12  Score=90.91  Aligned_cols=44  Identities=39%  Similarity=1.061  Sum_probs=36.9

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCC
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICS  252 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCr  252 (318)
                      ++||||++.+. ..+.++.|+|||.||.+|+.+|++. +.+||+||
T Consensus         1 d~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFE-DGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHH-TTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCCcCCChhhc-CCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            47999999754 4677889999999999999999986 58999997

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.11  E-value=5.7e-11  Score=95.06  Aligned_cols=51  Identities=20%  Similarity=0.457  Sum_probs=41.1

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~  256 (318)
                      +++..||.|..  ....-+++...|+|.||.+||.+||+.  .+.+||+||.++.
T Consensus        30 ~fdg~Cp~Ck~--Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   30 PFDGCCPDCKF--PGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             ccccCCCCccC--CCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            55678999984  344457778899999999999999985  3468999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.93  E-value=7.6e-10  Score=85.75  Aligned_cols=46  Identities=28%  Similarity=0.808  Sum_probs=35.7

Q ss_pred             CCCCcccccccccC---------CceeEEcCCCCccchHHHHHHHhcCCCCCCCCC
Q 021060          206 HHDCPVCCEYLFET---------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICS  252 (318)
Q Consensus       206 ~~~CpIClE~lf~s---------~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCr  252 (318)
                      +++|+||++.|.+.         ..+++.++|||.||..||.+||+. +.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            56799999987332         245577799999999999999985 46999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=5.7e-10  Score=109.19  Aligned_cols=50  Identities=28%  Similarity=0.824  Sum_probs=45.2

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..|+||||+ |..++.++.|||+|.||..|+++||...+..||+|+.++..
T Consensus       230 ~~CaIClEd-Y~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLED-YEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecc-cccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            699999996 88899999999999999999999998665669999998874

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.87  E-value=2e-09  Score=72.33  Aligned_cols=45  Identities=33%  Similarity=1.041  Sum_probs=37.1

Q ss_pred             CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCccc
Q 021060          208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV  255 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~  255 (318)
                      .|+||++.+   ..++.+++|||.||..|+..|++..+.+||+|++.+
T Consensus         1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh---hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999974   345667779999999999999986568899999764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.78  E-value=3.9e-09  Score=71.97  Aligned_cols=39  Identities=41%  Similarity=1.110  Sum_probs=32.6

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC  251 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiC  251 (318)
                      ||||++.+.+   ++++++|||+|+.+|+.+|++. +.+||+|
T Consensus         1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            7999986433   6689999999999999999986 6899998

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.70  E-value=1.3e-08  Score=95.47  Aligned_cols=54  Identities=19%  Similarity=0.609  Sum_probs=41.9

Q ss_pred             CCCCCCCcccccccccCCc----eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          203 GAMHHDCPVCCEYLFETRQ----DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~~----~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+.+..||||+|.+.+...    -.++++|||.||..|+.+|++. +.+||+||..+..
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~  228 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence            3456899999997654321    1245689999999999999984 6799999998863

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.69  E-value=1.3e-08  Score=71.06  Aligned_cols=39  Identities=38%  Similarity=1.199  Sum_probs=28.7

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHhcC---CCCCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH---QYACPIC  251 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~---~~~CPiC  251 (318)
                      ||||++. |+   +++.|+|||+|+..||.+|++..   .+.||+|
T Consensus         1 CpiC~~~-~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDL-FK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB--S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchh-hC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999995 55   47889999999999999998652   2579998

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=8e-09  Score=101.57  Aligned_cols=56  Identities=38%  Similarity=0.820  Sum_probs=47.4

Q ss_pred             CCCCCCCcccccccccCC---------ceeEEcCCCCccchHHHHHHHhcCCCCCCCCCccc-Cchh
Q 021060          203 GAMHHDCPVCCEYLFETR---------QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV-CDMS  259 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~---------~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~-~d~~  259 (318)
                      .+.+..|.||+|.|+.++         ..+..|||||.+|.+|++.|+++ +.+|||||.++ .|+.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ifd~~  349 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVIFDQS  349 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccccccC
Confidence            567889999999988876         33578999999999999999985 58999999995 4554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.65  E-value=1.7e-08  Score=72.10  Aligned_cols=47  Identities=34%  Similarity=0.982  Sum_probs=38.0

Q ss_pred             CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..|+||++.    ...++++||||. |+..|+.+|++ ...+||+||+++..
T Consensus         2 ~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFEN----PRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSS----BSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred             cCCCccCCcc----CCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence            3579999985    335789999999 99999999998 56899999998753

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.63  E-value=2.3e-08  Score=68.20  Aligned_cols=40  Identities=48%  Similarity=1.205  Sum_probs=33.4

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHh-cCCCCCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE-HHQYACPIC  251 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~-~~~~~CPiC  251 (318)
                      ||||++. +.  .++.+++|||.|+..|+.+|++ .....||+|
T Consensus         1 C~iC~~~-~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEP-FE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSB-CS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCcc-cc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            7999996 33  2446999999999999999998 566889998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.58  E-value=4.3e-08  Score=63.48  Aligned_cols=39  Identities=44%  Similarity=1.130  Sum_probs=33.2

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC  251 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiC  251 (318)
                      |+||++.    ...++.++|||.||..|+..|++....+||+|
T Consensus         1 C~iC~~~----~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE----LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC----CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899985    34678899999999999999997556789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=3.3e-08  Score=95.12  Aligned_cols=55  Identities=27%  Similarity=0.671  Sum_probs=46.3

Q ss_pred             cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       201 ie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +|.....+|+|||++ |...+.+++|||.|.||..|+++|+...+.+||+||..+.
T Consensus       318 ~ea~~GveCaICms~-fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         318 VEADKGVECAICMSN-FIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             HhcCCCceEEEEhhh-hcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            344556799999998 5667789999999999999999999755678999998765

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.4e-08  Score=79.95  Aligned_cols=51  Identities=24%  Similarity=0.490  Sum_probs=40.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~  256 (318)
                      ++++.||-|.  +....-++++..|.|.||..|+.+|+..  .+-.||+||.++.
T Consensus        29 ~Fdg~Cp~Ck--~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCK--LPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCc--CCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            5678899998  4555556666689999999999999864  3456999998774

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.51  E-value=5.6e-08  Score=68.60  Aligned_cols=40  Identities=38%  Similarity=1.053  Sum_probs=24.3

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHhcC---CCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH---QYACP  249 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~---~~~CP  249 (318)
                      ||||+| +-+...++++|+|||+|.++|++++++.+   .++||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 55556678899999999999999998743   46687

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.51  E-value=9.7e-08  Score=66.84  Aligned_cols=44  Identities=32%  Similarity=0.839  Sum_probs=36.9

Q ss_pred             CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCc
Q 021060          208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK  253 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrk  253 (318)
                      .|+||++.+ .......+++|||+|+..|+..+. .....||+||+
T Consensus         1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999964 555678899999999999999998 34578999986

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.45  E-value=7.5e-08  Score=96.50  Aligned_cols=81  Identities=27%  Similarity=0.673  Sum_probs=66.3

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcceEE
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWIL  286 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~Il  286 (318)
                      -.||||||.|..+...++...|.|+||..|+..|.   ..+||+||....                  |+.    -..-+
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~------------------p~~----ve~~~  230 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS------------------PSV----VESSL  230 (493)
T ss_pred             CCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC------------------cch----hhhhh
Confidence            47999999999999999999999999999999995   367999996443                  111    12456


Q ss_pred             cCCCCCCccccceeeeccCC--CCCCccccc
Q 021060          287 CNDCGKTSNVQFHVLAQKCP--NCKSYNTRL  315 (318)
Q Consensus       287 CnDC~~~s~v~~H~lg~KC~--~C~SyNT~~  315 (318)
                      |..|+...+.   |+-+.|+  +||.|+-..
T Consensus       231 c~~c~~~~~L---wicliCg~vgcgrY~egh  258 (493)
T KOG0804|consen  231 CLACGCTEDL---WICLICGNVGCGRYKEGH  258 (493)
T ss_pred             hhhhcccccE---EEEEEccceecccccchh
Confidence            9999988887   9999998  599998653

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.41  E-value=2.5e-07  Score=84.28  Aligned_cols=56  Identities=25%  Similarity=0.623  Sum_probs=42.8

Q ss_pred             ccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---------------CCCCCCCCCcccCc
Q 021060          198 HPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---------------HQYACPICSKSVCD  257 (318)
Q Consensus       198 H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---------------~~~~CPiCrks~~d  257 (318)
                      -+-++...+..||||++. +.   ++++++|||.|+..||.+|+..               ...+||+||..+..
T Consensus        10 ~~~~~~~~~~~CpICld~-~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         10 TTLVDSGGDFDCNICLDQ-VR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             ceeccCCCccCCccCCCc-CC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            344444567899999995 33   4567899999999999999842               23579999999964

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.37  E-value=2.3e-07  Score=73.68  Aligned_cols=51  Identities=20%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             CCCCcccccccccCC-ceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETR-QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~-~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+.||-|.-.+-... -+++...|.|.||.+||..||.. +..||++|+++..
T Consensus        31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~   82 (88)
T COG5194          31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL   82 (88)
T ss_pred             cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence            456777765332222 34566789999999999999985 6899999998863

>PHA02926 zinc finger-like protein; Provisional

Probab=98.24  E-value=7.2e-07  Score=82.94  Aligned_cols=56  Identities=20%  Similarity=0.536  Sum_probs=42.2

Q ss_pred             CCCCCCCCcccccccccCC-----ceeEEcCCCCccchHHHHHHHhcC-----CCCCCCCCcccCc
Q 021060          202 EGAMHHDCPVCCEYLFETR-----QDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD  257 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~-----~~v~~LpCGH~fH~~Cl~~wl~~~-----~~~CPiCrks~~d  257 (318)
                      +.+.+..|+||||.+++.+     ...++.+|+|.||..|+.+|.+..     ..+||+||..+..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            4566889999999765421     223556999999999999998742     2459999998763

>smart00504 Ubox Modified RING finger domain

Probab=98.12  E-value=2.9e-06  Score=62.25  Aligned_cols=45  Identities=20%  Similarity=0.473  Sum_probs=37.9

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ..||||++. ++   .+++++|||+|.+.|+.+|++. +.+||+|++.+.
T Consensus         2 ~~Cpi~~~~-~~---~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEV-MK---DPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCc-CC---CCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence            469999995 44   2467899999999999999985 678999999884

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.6e-06  Score=89.42  Aligned_cols=54  Identities=31%  Similarity=0.660  Sum_probs=43.9

Q ss_pred             CCCCCCCCcccccccccCCc-eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          202 EGAMHHDCPVCCEYLFETRQ-DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~~-~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ....+..|+||+|.|..+.. .+..|||||.||..|+.+|++. ..+||+||..+.
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~  341 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY  341 (543)
T ss_pred             hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence            34568899999998876421 2568999999999999999986 689999999443

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=7e-06  Score=74.04  Aligned_cols=48  Identities=25%  Similarity=0.742  Sum_probs=38.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      -..|||||+. +. .+.++...|||.|+++||...++. ...||+|+|.+.
T Consensus       131 ~~~CPiCl~~-~s-ek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt  178 (187)
T KOG0320|consen  131 TYKCPICLDS-VS-EKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKIT  178 (187)
T ss_pred             ccCCCceecc-hh-hccccccccchhHHHHHHHHHHHh-CCCCCCcccccc
Confidence            3789999996 33 222355799999999999999985 588999999664

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.2e-05  Score=77.07  Aligned_cols=47  Identities=28%  Similarity=0.718  Sum_probs=39.0

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ...|.+|||.    +..+...||||.|+-.||.+|... ..-||+||..+..
T Consensus       239 ~~kC~LCLe~----~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p  285 (293)
T KOG0317|consen  239 TRKCSLCLEN----RSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQP  285 (293)
T ss_pred             CCceEEEecC----CCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence            3579999994    345678999999999999999975 4669999988764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.77  E-value=2.1e-05  Score=56.77  Aligned_cols=43  Identities=28%  Similarity=0.724  Sum_probs=33.4

Q ss_pred             CCcccccccccCCceeEEcCCC-----CccchHHHHHHHhcC-CCCCCCCC
Q 021060          208 DCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICS  252 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCr  252 (318)
                      .|-||++  +.+.....+.||.     |.+|..|+.+|+... +.+||+|+
T Consensus         1 ~CrIC~~--~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD--EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC--CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3889997  3344566788994     999999999999653 45799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=2e-05  Score=73.54  Aligned_cols=50  Identities=28%  Similarity=0.662  Sum_probs=38.4

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC--CCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~d  257 (318)
                      ....+|-||||-   . +++++-.|||.|+--||-+||...  ...||+|+..+..
T Consensus        45 ~~~FdCNICLd~---a-kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   45 GGFFDCNICLDL---A-KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CCceeeeeeccc---c-CCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            446799999983   2 344555599999999999999753  3348999998874

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.72  E-value=2.2e-05  Score=78.63  Aligned_cols=48  Identities=23%  Similarity=0.684  Sum_probs=39.4

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ....|+||++. +.   .+++++|||.|+..|+..|+.. ...||+|+..+..
T Consensus        25 ~~l~C~IC~d~-~~---~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~   72 (397)
T TIGR00599        25 TSLRCHICKDF-FD---VPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE   72 (397)
T ss_pred             cccCCCcCchh-hh---CccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc
Confidence            35799999995 44   2457899999999999999975 4689999998863

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.6e-05  Score=70.52  Aligned_cols=44  Identities=39%  Similarity=1.050  Sum_probs=37.4

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK  253 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrk  253 (318)
                      ....||||+++ |..+   ++|||||+|+..|+..++. ....||.||.
T Consensus        12 ~~~~C~iC~~~-~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEY-FREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHH-hhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence            46789999996 4432   8999999999999999987 5688999994

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.70  E-value=3.3e-05  Score=75.04  Aligned_cols=52  Identities=23%  Similarity=0.590  Sum_probs=39.8

Q ss_pred             CCCCcccccccccCCce-eEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQD-VIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~-v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||+...+.+..- ..+-+|||.|+..|++.++..+...||+|++++..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            45799999865555432 22337999999999999776666789999998763

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=1.7e-05  Score=65.95  Aligned_cols=34  Identities=24%  Similarity=0.494  Sum_probs=29.5

Q ss_pred             eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          222 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       222 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .+...-|.|+||..|+..||+. +..||++.+.+.
T Consensus        75 ~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~eW~  108 (114)
T KOG2930|consen   75 TVAWGVCNHAFHFHCISRWLKT-RNVCPLDNKEWV  108 (114)
T ss_pred             EEEeeecchHHHHHHHHHHHhh-cCcCCCcCccee
Confidence            3556689999999999999985 689999999875

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.49  E-value=0.00019  Score=55.28  Aligned_cols=48  Identities=23%  Similarity=0.524  Sum_probs=36.5

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..|||+++- +.   +++++|+||+|-+.++.+|+.....+||+++..+..
T Consensus         4 ~f~CpIt~~l-M~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    4 EFLCPITGEL-MR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGB-TTTSSB--S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             ccCCcCcCcH-hh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            4579999984 44   467899999999999999998757899999988874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.49  E-value=2.3e-05  Score=60.41  Aligned_cols=51  Identities=27%  Similarity=0.656  Sum_probs=23.2

Q ss_pred             CCCCcccccccccCC-ceeEEc---CCCCccchHHHHHHHhc---CC-------CCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETR-QDVIVL---PCGHTIHKNCLKEMREH---HQ-------YACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~-~~v~~L---pCGH~fH~~Cl~~wl~~---~~-------~~CPiCrks~~  256 (318)
                      +.+|+||.+++.+.. .+..+-   .|+..||..||.+||..   .+       -+||.|++.+.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            467999998765232 233332   69999999999999863   11       14999998874

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.44  E-value=9.1e-05  Score=72.79  Aligned_cols=46  Identities=30%  Similarity=0.823  Sum_probs=39.4

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..|-||.|| |.   -+++.||||+|+.-||..+|. .+..||.|+.++..
T Consensus        24 LRC~IC~ey-f~---ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   24 LRCGICFEY-FN---IPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHhHHHHH-hc---CceeccccchHHHHHHHHHhc-cCCCCCceecccch
Confidence            479999996 54   367889999999999999998 46899999999874

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=6.7e-05  Score=76.59  Aligned_cols=51  Identities=25%  Similarity=0.706  Sum_probs=38.7

Q ss_pred             CCCCcccccccccC-------------CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFET-------------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s-------------~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ..+|+|||.++..-             ++..++.||.|.||++|+.+|+......||+||..+.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            46899999765211             1235566999999999999999754467999998775

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0001  Score=75.36  Aligned_cols=50  Identities=26%  Similarity=0.629  Sum_probs=37.6

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC----CCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH----QYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~----~~~CPiCrks~~d  257 (318)
                      +++..|||||++ +.  -++++ .|||.|+..||.+|+...    --.||||+..+..
T Consensus       184 ~t~~~CPICL~~-~~--~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  184 STDMQCPICLEP-PS--VPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CcCCcCCcccCC-CC--ccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            447899999986 22  23444 499999999999987643    2359999998864

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00014  Score=72.45  Aligned_cols=49  Identities=27%  Similarity=0.637  Sum_probs=38.6

Q ss_pred             CCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcC--CCCCCCCCccc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH--QYACPICSKSV  255 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~--~~~CPiCrks~  255 (318)
                      ...|.|| ++++....++..+. |||+||..|+.+|+...  +..||+|+-.+
T Consensus         4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            3579999 55787777777665 99999999999999863  24799999333

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00043  Score=65.91  Aligned_cols=48  Identities=27%  Similarity=0.565  Sum_probs=37.6

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHH-HHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~-wl~~~~~~CPiCrks~~d  257 (318)
                      +..|+||+|.    .......+|||.|+..||.. |.+...-.||+||.-...
T Consensus       215 d~kC~lC~e~----~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         215 DYKCFLCLEE----PEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccceeeeecc----cCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            5679999985    33467889999999999999 876443349999976643

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.92  E-value=0.0004  Score=53.27  Aligned_cols=55  Identities=24%  Similarity=0.619  Sum_probs=27.1

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC--chhHHHHHhHHH
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC--DMSKVWEKYDRE  268 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~--d~~~~~~~lD~~  268 (318)
                      ..|++|.+.|..   ++.+..|.|.|+..|+.+.+.   ..||+|+.+.-  |+. ..+.||..
T Consensus         8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~-~NrqLd~~   64 (65)
T PF14835_consen    8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQ-INRQLDSM   64 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS-----HHHHHH
T ss_pred             cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHH-hhhhhhcc
Confidence            479999986433   677789999999999999775   45999999884  432 23456654

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.00034  Score=52.32  Aligned_cols=52  Identities=25%  Similarity=0.665  Sum_probs=39.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCchh
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDMS  259 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d~~  259 (318)
                      +...+|.||+|.    ..+.++.-|||. ++-+|-...++...-.||+||.++.+.-
T Consensus         5 ~~~dECTICye~----pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvI   57 (62)
T KOG4172|consen    5 QWSDECTICYEH----PVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVI   57 (62)
T ss_pred             ccccceeeeccC----cchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHH
Confidence            345889999985    233456689998 8899988866656688999999887643

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0015  Score=64.36  Aligned_cols=49  Identities=31%  Similarity=0.811  Sum_probs=39.7

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ....+|.|||..    .++.++|||-|. ++..|.+...- ....|||||..+..
T Consensus       288 ~~gkeCVIClse----~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSE----SRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecC----CcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence            345789999974    457899999998 99999999752 35789999998763

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.00069  Score=64.94  Aligned_cols=52  Identities=23%  Similarity=0.562  Sum_probs=41.2

Q ss_pred             CCCCCcccccccccCC------ceeEEcCCCCccchHHHHHHH-hcCCCCCCCCCcccC
Q 021060          205 MHHDCPVCCEYLFETR------QDVIVLPCGHTIHKNCLKEMR-EHHQYACPICSKSVC  256 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~------~~v~~LpCGH~fH~~Cl~~wl-~~~~~~CPiCrks~~  256 (318)
                      .++.|+||...++.+.      +..-.|.|+|+||.-|++-|- -.+..+||-|++.+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            3578999988766654      245679999999999999994 345678999998775

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.36  E-value=0.0026  Score=46.19  Aligned_cols=47  Identities=34%  Similarity=0.699  Sum_probs=25.3

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCccc
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV  255 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~  255 (318)
                      ||+|.|.|..++.....=+||+-+++.|+...+...+.+||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            79999988555444444467999999999999875578999999864

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0011  Score=65.42  Aligned_cols=79  Identities=22%  Similarity=0.495  Sum_probs=52.3

Q ss_pred             CCCCCCcccccccccCC---ceeEE-cCCCCccchHHHHHHHhcCC------CCCCCCCcccCch--hHHHHHhHHHHHc
Q 021060          204 AMHHDCPVCCEYLFETR---QDVIV-LPCGHTIHKNCLKEMREHHQ------YACPICSKSVCDM--SKVWEKYDREIAA  271 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~---~~v~~-LpCGH~fH~~Cl~~wl~~~~------~~CPiCrks~~d~--~~~~~~lD~~i~~  271 (318)
                      +.+..|-||+|.+.+..   ....+ ++|.|+|+..|+..|.+..+      ..||+||......  +..|-.-.+  +.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~--~k  236 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKE--EK  236 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecc--cc
Confidence            55789999999765533   11223 46999999999999985433      5799999887642  223532222  56


Q ss_pred             CCCChhhhcCcce
Q 021060          272 TPMPEAYLNKKVW  284 (318)
Q Consensus       272 ~pmPeey~~~~v~  284 (318)
                      ++++++|...+..
T Consensus       237 ~~li~e~~~~~s~  249 (344)
T KOG1039|consen  237 QKLIEEYEAEMSA  249 (344)
T ss_pred             cccHHHHHHHhhc
Confidence            6677777665443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0011  Score=70.68  Aligned_cols=47  Identities=28%  Similarity=0.721  Sum_probs=40.9

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..||+|-.    ..+++++..|||.|+..|++..+...+.+||.|+.+|+.
T Consensus       644 LkCs~Cn~----R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  644 LKCSVCNT----RWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             eeCCCccC----chhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            57999985    345678889999999999999988778899999999984

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.27  E-value=0.00077  Score=67.45  Aligned_cols=59  Identities=34%  Similarity=0.702  Sum_probs=48.9

Q ss_pred             cccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          197 SHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       197 ~H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      .|.|++ +++..|-.|.|.+-...+....|||.|.||..|+.++|.. ...+||-||+-..
T Consensus       357 a~~~~~-e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  357 AHECVE-ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             HHHHHH-HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            478886 6789999999988777777889999999999999999854 4467999995433

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=96.21  E-value=0.0027  Score=61.58  Aligned_cols=46  Identities=26%  Similarity=0.618  Sum_probs=38.0

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      -..|-||-+++ .   .....+|||+|+.-||..+|. .+..||+||.+..
T Consensus        25 ~lrC~IC~~~i-~---ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~   70 (391)
T COG5432          25 MLRCRICDCRI-S---IPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPC   70 (391)
T ss_pred             HHHhhhhhhee-e---cceecccccchhHHHHHHHhc-CCCCCccccccHH
Confidence            35799999863 2   245679999999999999997 5799999998775

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.0014  Score=64.82  Aligned_cols=48  Identities=23%  Similarity=0.568  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +..|||||+-|..   ...+.-|+|.|+.+||..-+..++..||.||+.+.
T Consensus        43 ~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   43 QVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            4689999995433   34567899999999999988888889999999987

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.98  E-value=0.0021  Score=64.56  Aligned_cols=54  Identities=30%  Similarity=0.765  Sum_probs=45.1

Q ss_pred             cccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          199 PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       199 ~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      .|.-+++-..|-||.|    +.+++.+=||||.++..|+..|-.. +...||.||-.+.
T Consensus       362 YceMgsTFeLCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  362 YCEMGSTFELCKICAE----NDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHccchHHHHHHhhc----cCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            4666788889999998    4567889999999999999999743 3578999998774

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.90  E-value=0.0064  Score=45.29  Aligned_cols=44  Identities=27%  Similarity=0.619  Sum_probs=29.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI  250 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPi  250 (318)
                      .....|||-+.. +.  ++++...|||+|-++.|.+|++. ....||+
T Consensus         9 ~~~~~CPiT~~~-~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQP-FE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB--S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCCh-hh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            345789999985 44  47888899999999999999943 4567998

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.80  E-value=0.0044  Score=67.75  Aligned_cols=53  Identities=21%  Similarity=0.570  Sum_probs=37.7

Q ss_pred             CCCCCCcccccccc--cCCcee-EEcCCCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLF--ETRQDV-IVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf--~s~~~v-~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      +...+||||..-|.  +..-|. +-.-|.|-||..|+-+|+++ ++.+||+||.++.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            55789999986443  111122 22348899999999999865 5678999997764

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.015  Score=55.92  Aligned_cols=53  Identities=26%  Similarity=0.668  Sum_probs=42.0

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCCCCcccCchh
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVCDMS  259 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~d~~  259 (318)
                      .....||+|.++   +.-|.+..+|||.|+--|+..-+.. ..++||.|+.+...+.
T Consensus       237 t~~~~C~~Cg~~---PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  237 TSDTECPVCGEP---PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cCCceeeccCCC---CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence            456799999985   4557778899999999999985432 3589999999887653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.015  Score=56.55  Aligned_cols=49  Identities=18%  Similarity=0.442  Sum_probs=39.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .+..+|+||+...   . -++.|+|+|.|+-.|++--.+.+..+||+||.++.
T Consensus         5 ~~~~eC~IC~nt~---n-~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    5 TKKKECLICYNTG---N-CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             ccCCcceeeeccC---C-cCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            4578999999742   2 24789999999999999855555577999999986

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=94.81  E-value=0.022  Score=43.06  Aligned_cols=46  Identities=33%  Similarity=0.853  Sum_probs=33.3

Q ss_pred             CceeecCCCCccccc-----cccCcCCCCc-cceEecCccccccCCCCCCeeecCCCCc
Q 021060          119 VNQVICSLCGTEQKV-----QQVCVNCGVC-MGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (318)
Q Consensus       119 v~~v~C~~C~~eQ~v-----~~~C~~Cg~~-f~~YfC~~Ckl~ddd~~k~~yHC~~Cgi  171 (318)
                      .....|..|+.+...     .-.|||||.. ..|  |.+|+-+.     ..|.|++||+
T Consensus         5 ~~~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~R--C~~CRk~~-----~~Y~CP~CGF   56 (59)
T PRK14890          5 MEPPKCTSCGIEIAPREKAVKFLCPNCGEVIIYR--CEKCRKQS-----NPYTCPKCGF   56 (59)
T ss_pred             ccCccccCCCCcccCCCccCEeeCCCCCCeeEee--chhHHhcC-----CceECCCCCC
Confidence            445678889876543     3469999986 544  88997764     4799999985

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.73  E-value=0.032  Score=56.32  Aligned_cols=50  Identities=24%  Similarity=0.739  Sum_probs=38.3

Q ss_pred             CCCcccccccccCCc-eeEEcCCCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          207 HDCPVCCEYLFETRQ-DVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       207 ~~CpIClE~lf~s~~-~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      ..||||++..-.+++ ..+.|.|||.|=.+|++.||-. ....||.|.....
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            579999987655443 4567899999999999999942 1235999987654

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.71  E-value=0.019  Score=41.00  Aligned_cols=41  Identities=29%  Similarity=0.759  Sum_probs=26.3

Q ss_pred             CcccccccccCCceeEEcCCC-----CccchHHHHHHHhc-CCCCCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREH-HQYACPIC  251 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~-~~~~CPiC  251 (318)
                      |-||++...+  ++..+.||+     -..|.+||.+|+.. ++.+|++|
T Consensus         1 CrIC~~~~~~--~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEE--DEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SS--SS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCC--CCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            5688875333  235667884     47899999999864 45679987

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.65  E-value=0.012  Score=63.50  Aligned_cols=50  Identities=14%  Similarity=0.376  Sum_probs=39.7

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||+|+.. +.........+|+|.||.+||..|-.. ..+||+||+.|..
T Consensus       123 ~~~CP~Ci~s-~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKS-CNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHH-HHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            5679999974 443444456789999999999999764 4789999999873

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.30  E-value=0.034  Score=53.90  Aligned_cols=49  Identities=20%  Similarity=0.532  Sum_probs=40.1

Q ss_pred             CCcccccccccCCceeE-EcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          208 DCPVCCEYLFETRQDVI-VLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~-~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .||+|..+.+.+..-.. +=+|||.++.+|+...+..+.+.||.|.+.+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            59999877776654332 23999999999999999888899999998875

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.26  E-value=0.023  Score=45.37  Aligned_cols=33  Identities=36%  Similarity=0.850  Sum_probs=27.6

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHH
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLK  238 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~  238 (318)
                      .....|+||...|..  ....+.||||.+|..|++
T Consensus        76 ~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence            446789999998766  467888999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=94.23  E-value=0.039  Score=62.95  Aligned_cols=74  Identities=27%  Similarity=0.577  Sum_probs=54.4

Q ss_pred             cCCcceeeccCccceeeccccccccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---------CC
Q 021060          175 GGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---------HQ  245 (318)
Q Consensus       175 G~~~~ffHC~~C~~C~s~~l~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---------~~  245 (318)
                      ||.+|--||.-|--|-.-..       .+..++.|.||+.+ ..+-.+...|.|||.||.+|....|..         +-
T Consensus      3462 GGvkNEE~CLPCl~Cdks~t-------kQD~DDmCmICFTE-~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~F 3533 (3738)
T KOG1428|consen 3462 GGVKNEEHCLPCLHCDKSAT-------KQDADDMCMICFTE-ALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGF 3533 (3738)
T ss_pred             cCccchhhcccccccChhhh-------hcccCceEEEEehh-hhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEee
Confidence            55677788888877643322       23447889999864 455678899999999999999886653         12


Q ss_pred             CCCCCCCcccC
Q 021060          246 YACPICSKSVC  256 (318)
Q Consensus       246 ~~CPiCrks~~  256 (318)
                      ..||+|...+.
T Consensus      3534 isCPiC~n~In 3544 (3738)
T KOG1428|consen 3534 ISCPICKNKIN 3544 (3738)
T ss_pred             eecccccchhh
Confidence            36999998875

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.93  E-value=0.023  Score=42.44  Aligned_cols=33  Identities=39%  Similarity=0.785  Sum_probs=26.5

Q ss_pred             eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          222 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       222 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .-.++||||.+...|+.-+--   .-||+|.+.+..
T Consensus        19 ~~~~~pCgH~I~~~~f~~~rY---ngCPfC~~~~~~   51 (55)
T PF14447_consen   19 KGTVLPCGHLICDNCFPGERY---NGCPFCGTPFEF   51 (55)
T ss_pred             ccccccccceeeccccChhhc---cCCCCCCCcccC
Confidence            456899999999999887632   349999998864

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=0.092  Score=49.83  Aligned_cols=49  Identities=31%  Similarity=0.756  Sum_probs=38.5

Q ss_pred             CCCcccccccccCC---ceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          207 HDCPVCCEYLFETR---QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       207 ~~CpIClE~lf~s~---~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ..|-||-++ |.+.   .-++.|.|||++...|+...+......||.||.+..
T Consensus         4 ~~c~~c~~~-~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~   55 (296)
T KOG4185|consen    4 PECEICNED-YSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE   55 (296)
T ss_pred             CceeecCcc-ccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence            457788776 4443   335788999999999999999876677999999963

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.73  E-value=0.051  Score=51.28  Aligned_cols=37  Identities=30%  Similarity=0.737  Sum_probs=28.3

Q ss_pred             ccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          217 FETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       217 f~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +.+..+..+..|+|+|+..|...-..   ..||+|++++-
T Consensus        12 ~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir   48 (233)
T KOG4739|consen   12 FPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR   48 (233)
T ss_pred             cCCCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence            44445566779999999999887532   37999999974

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.69  E-value=0.069  Score=53.04  Aligned_cols=47  Identities=26%  Similarity=0.639  Sum_probs=35.1

Q ss_pred             CCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      |.+...+|.||++.    ....+.+||||+-+  |..-...  ..+||+||.++.
T Consensus       301 ~~~~p~lcVVcl~e----~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDE----PKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCC----ccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            45678999999984    33578999999966  5555432  356999998764

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.58  E-value=0.073  Score=48.75  Aligned_cols=32  Identities=28%  Similarity=0.760  Sum_probs=25.6

Q ss_pred             EcCCCCccchHHHHHHHhc-----CC-----CCCCCCCcccC
Q 021060          225 VLPCGHTIHKNCLKEMREH-----HQ-----YACPICSKSVC  256 (318)
Q Consensus       225 ~LpCGH~fH~~Cl~~wl~~-----~~-----~~CPiCrks~~  256 (318)
                      -..||..||.-|+.+||..     .+     -.||.|++++.
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            4579999999999999863     11     14999999885

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=92.57  E-value=0.073  Score=53.39  Aligned_cols=49  Identities=29%  Similarity=0.690  Sum_probs=39.5

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+..||+|..-+-   +++....|||.|+..|+.+|+.. +..||.|+..+..
T Consensus        20 ~~l~C~~C~~vl~---~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   20 ENLLCPICMSVLR---DPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQ   68 (391)
T ss_pred             ccccCcccccccc---CCCCCCCCCCcccccccchhhcc-CcCCcccccccch
Confidence            3578999997532   24444789999999999999986 6899999988764

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.57  E-value=0.045  Score=54.33  Aligned_cols=57  Identities=26%  Similarity=0.604  Sum_probs=45.6

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHH
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVW  262 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~  262 (318)
                      ++.||.|+|+|.-+.+....-|||--+++-|+....+.-+-+||-||+...+-...|
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~   70 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY   70 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence            456999999988777666667899999999998876655678999999988755444

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.20  E-value=0.071  Score=46.41  Aligned_cols=35  Identities=20%  Similarity=0.514  Sum_probs=30.2

Q ss_pred             CCCCcccccccccCCceeEEcCCC------CccchHHHHHHH
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCG------HTIHKNCLKEMR  241 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCG------H~fH~~Cl~~wl  241 (318)
                      ..+|.||++.+.. .+.++.+++|      |.||.+|+..|-
T Consensus        26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            4689999998776 6689999997      779999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.80  E-value=0.16  Score=51.30  Aligned_cols=49  Identities=29%  Similarity=0.824  Sum_probs=38.9

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..|-||+.-++.    ++++||||+|+..|+..-+. ...-||+||-.+..
T Consensus        82 ~sef~c~vc~~~l~~----pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP----PVVTPCGHSFCLECLDRSLD-QETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCC----CccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence            457789999874433    55669999999999999766 34679999999874

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=91.78  E-value=0.098  Score=40.87  Aligned_cols=36  Identities=28%  Similarity=0.813  Sum_probs=24.3

Q ss_pred             ceeecCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021060          120 NQVICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF  155 (318)
Q Consensus       120 ~~v~C~~C~~eQ~v~~~C~~Cg~~f--------~~YfC~~Ckl~  155 (318)
                      ....|..|+..-.....||.||.++        +.|||..|+=.
T Consensus        16 ~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~gL   59 (70)
T PF07191_consen   16 GHYHCEACQKDYKKEAFCPDCGQPLEVLKACGAVDYFCNHCHGL   59 (70)
T ss_dssp             TEEEETTT--EEEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-E
T ss_pred             CEEECccccccceecccCCCcccHHHHHHHhcccceeeccCCce
Confidence            5788999998877788899998887        68999999744

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.53  E-value=0.031  Score=54.45  Aligned_cols=54  Identities=28%  Similarity=0.680  Sum_probs=37.5

Q ss_pred             cccccccCCCC---CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          195 KNSHPCVEGAM---HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       195 ~~~H~Cie~~~---~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ++.|-+-....   +..|.||++    .+.+-++|+|||. -+.+|-..+-     .|||||+-+..
T Consensus       286 k~~~g~~~~~s~~~~~LC~ICmD----aP~DCvfLeCGHmVtCt~CGkrm~-----eCPICRqyi~r  343 (350)
T KOG4275|consen  286 KGNDGEQHSRSLATRRLCAICMD----APRDCVFLECGHMVTCTKCGKRMN-----ECPICRQYIVR  343 (350)
T ss_pred             hcccccccccchhHHHHHHHHhc----CCcceEEeecCcEEeehhhccccc-----cCchHHHHHHH
Confidence            34444443333   789999998    4667899999997 4556655542     59999986643

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=91.45  E-value=0.22  Score=48.59  Aligned_cols=62  Identities=24%  Similarity=0.576  Sum_probs=45.8

Q ss_pred             CCCCcccccccccCCceeEEcCC--CCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhh
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPC--GHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAY  278 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpC--GH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey  278 (318)
                      -.+||||.++|..   +  ++.|  ||..+..|-.+.    ...||.||.++++...  +.++..+++...|=.|
T Consensus        48 lleCPvC~~~l~~---P--i~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~~R~--~amEkV~e~~~vpC~~  111 (299)
T KOG3002|consen   48 LLDCPVCFNPLSP---P--IFQCDNGHLACSSCRTKV----SNKCPTCRLPIGNIRC--RAMEKVAEAVLVPCKN  111 (299)
T ss_pred             hccCchhhccCcc---c--ceecCCCcEehhhhhhhh----cccCCccccccccHHH--HHHHHHHHhceecccc
Confidence            4689999997543   2  5566  899999999865    3679999999996533  4567777777665443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=91.36  E-value=0.19  Score=47.51  Aligned_cols=51  Identities=25%  Similarity=0.658  Sum_probs=39.6

Q ss_pred             CCCCCCCcccccccccCCceeE-EcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          203 GAMHHDCPVCCEYLFETRQDVI-VLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~~~v~-~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ......|||....| .+....+ +.||||+|-..++.+.-  ....||+|.+++.
T Consensus       110 ~~~~~~CPvt~~~~-~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEF-NGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCccc-CCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccc
Confidence            35567899999865 4444444 45999999999999984  3467999999986

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=0.14  Score=51.89  Aligned_cols=53  Identities=26%  Similarity=0.429  Sum_probs=38.9

Q ss_pred             ccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-------CCCCCCCCC
Q 021060          198 HPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPICS  252 (318)
Q Consensus       198 H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCr  252 (318)
                      +.+.-+ +-.+|-||++. +........|||+|+|++.|+..|+..       ...+||-+.
T Consensus       177 ~~~F~~-slf~C~ICf~e-~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  177 LEKFVN-SLFDCCICFEE-QMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             HHHHHh-hcccceeeehh-hcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            444433 35789999984 665567889999999999999998642       245687554

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.79  E-value=0.17  Score=38.50  Aligned_cols=45  Identities=33%  Similarity=0.878  Sum_probs=33.3

Q ss_pred             eeecCCCCcccccc-----ccCcCCCCccceEecCccccccCCCCCCeeecCCCCc
Q 021060          121 QVICSLCGTEQKVQ-----QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (318)
Q Consensus       121 ~v~C~~C~~eQ~v~-----~~C~~Cg~~f~~YfC~~Ckl~ddd~~k~~yHC~~Cgi  171 (318)
                      ...|..|+.+..+.     -.|||||..+ =|-|.+|+.+.+     +|.|++||+
T Consensus         9 ~~~CtSCg~~i~p~e~~v~F~CPnCGe~~-I~Rc~~CRk~g~-----~Y~Cp~CGF   58 (61)
T COG2888           9 PPVCTSCGREIAPGETAVKFPCPNCGEVE-IYRCAKCRKLGN-----PYRCPKCGF   58 (61)
T ss_pred             CceeccCCCEeccCCceeEeeCCCCCcee-eehhhhHHHcCC-----ceECCCcCc
Confidence            56899999887443     3599999443 366888887744     799999985

>PF12773 DZR: Double zinc ribbon

Probab=90.78  E-value=0.22  Score=35.14  Aligned_cols=22  Identities=32%  Similarity=0.845  Sum_probs=15.2

Q ss_pred             cCCCCccccc-cccCcCCCCccc
Q 021060          124 CSLCGTEQKV-QQVCVNCGVCMG  145 (318)
Q Consensus       124 C~~C~~eQ~v-~~~C~~Cg~~f~  145 (318)
                      |..|+++.+. +..|++||..+.
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~   23 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLP   23 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChh
Confidence            5567776554 567888888776

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.72  E-value=0.35  Score=45.88  Aligned_cols=52  Identities=31%  Similarity=0.654  Sum_probs=40.7

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-------CCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCrks~~d  257 (318)
                      -...+|..|.-.|-. + +.+.|.|=|.||-.|+++|...       ..|+||-|+..+..
T Consensus        48 DY~pNC~LC~t~La~-g-dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLAS-G-DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCCCceeCCcccc-C-cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            346789999876443 3 4567889999999999999652       35899999999863

>TIGR00100 hypA hydrogenase nickel insertion protein HypA

Probab=90.70  E-value=0.18  Score=42.42  Aligned_cols=36  Identities=22%  Similarity=0.595  Sum_probs=28.5

Q ss_pred             CcceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021060          281 KKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       281 ~~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      ..+...|++|+.......+  ...||.|||++++.++|
T Consensus        67 ~p~~~~C~~Cg~~~~~~~~--~~~CP~Cgs~~~~i~~G  102 (115)
T TIGR00100        67 EPVECECEDCSEEVSPEID--LYRCPKCHGIMLQVRAG  102 (115)
T ss_pred             eCcEEEcccCCCEEecCCc--CccCcCCcCCCcEEecC
Confidence            3567899999987766432  35799999999998876

In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=90.66  E-value=0.078  Score=51.91  Aligned_cols=37  Identities=24%  Similarity=0.517  Sum_probs=31.1

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHh
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE  242 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~  242 (318)
                      -.+.|.|||= =|.+.....+.+|-|+||..||..||.
T Consensus       114 p~gqCvICLy-gfa~~~~ft~T~C~Hy~H~~ClaRyl~  150 (368)
T KOG4445|consen  114 PNGQCVICLY-GFASSPAFTVTACDHYMHFACLARYLT  150 (368)
T ss_pred             CCCceEEEEE-eecCCCceeeehhHHHHHHHHHHHHHH
Confidence            3679999995 466666788889999999999998875

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=90.59  E-value=0.26  Score=44.12  Aligned_cols=33  Identities=33%  Similarity=0.893  Sum_probs=23.8

Q ss_pred             CCCCcccccccccCCceeEEcCCC-C------------ccchHHHHHHHh
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCG-H------------TIHKNCLKEMRE  242 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCG-H------------~fH~~Cl~~wl~  242 (318)
                      +..||||||.    +-..++|-|. |            .-|..||+++-+
T Consensus         2 d~~CpICme~----PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEH----PHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccC----CCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            4679999995    3346677773 3            268999999865

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.19  E-value=0.22  Score=50.11  Aligned_cols=48  Identities=29%  Similarity=0.647  Sum_probs=40.2

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCC--CCCCCCCccc
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQ--YACPICSKSV  255 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~--~~CPiCrks~  255 (318)
                      ..|||=.|. -+...|++.|.|||++-++-++.+.+.+.  ++||-|-...
T Consensus       335 F~CPVlKeq-tsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  335 FICPVLKEQ-TSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             eecccchhh-ccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            579998884 55567899999999999999999988766  8899997543

>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional

Probab=89.67  E-value=0.24  Score=41.80  Aligned_cols=37  Identities=30%  Similarity=0.627  Sum_probs=28.9

Q ss_pred             cCcceEEcCCCCCCcccc-ceeeeccCCCCCCccccccCC
Q 021060          280 NKKVWILCNDCGKTSNVQ-FHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       280 ~~~v~IlCnDC~~~s~v~-~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      ...+...|++|+...... +++  .+||.|||++...++|
T Consensus        67 ~vp~~~~C~~Cg~~~~~~~~~~--~~CP~Cgs~~~~i~~G  104 (117)
T PRK00564         67 DEKVELECKDCSHVFKPNALDY--GVCEKCHSKNVIITQG  104 (117)
T ss_pred             ecCCEEEhhhCCCccccCCccC--CcCcCCCCCceEEecC
Confidence            335778999999877664 333  4799999999998876

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=89.27  E-value=0.28  Score=42.35  Aligned_cols=37  Identities=27%  Similarity=0.734  Sum_probs=27.5

Q ss_pred             cceEEcCCCCCCcccc-------------cee------eeccCCCCCCccccccCC
Q 021060          282 KVWILCNDCGKTSNVQ-------------FHV------LAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       282 ~v~IlCnDC~~~s~v~-------------~H~------lg~KC~~C~SyNT~~~~~  318 (318)
                      .....|.+|+......             +|+      ...+||.|||++.+.++|
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G  123 (135)
T PRK03824         68 EAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFEIVKG  123 (135)
T ss_pred             ceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCcEEecC
Confidence            4678899999766443             222      336899999999998876

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=88.81  E-value=0.087  Score=41.16  Aligned_cols=65  Identities=26%  Similarity=0.548  Sum_probs=39.1

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcceEE
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWIL  286 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~Il  286 (318)
                      ..||.|...|-...        ||+.+..|-..+..  ...||-|..++..+.                   +-..++.+
T Consensus         2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~~~~--~a~CPdC~~~Le~Lk-------------------ACGAvdYF   52 (70)
T PF07191_consen    2 NTCPKCQQELEWQG--------GHYHCEACQKDYKK--EAFCPDCGQPLEVLK-------------------ACGAVDYF   52 (70)
T ss_dssp             -B-SSS-SBEEEET--------TEEEETTT--EEEE--EEE-TTT-SB-EEEE-------------------ETTEEEEE
T ss_pred             CcCCCCCCccEEeC--------CEEECcccccccee--cccCCCcccHHHHHH-------------------Hhccccee
Confidence            57999998643321        88999999998865  367999999886543                   23357899


Q ss_pred             cCCCCC---Ccccccee
Q 021060          287 CNDCGK---TSNVQFHV  300 (318)
Q Consensus       287 CnDC~~---~s~v~~H~  300 (318)
                      ||.|++   ++.|.|.+
T Consensus        53 C~~c~gLiSKkrV~f~~   69 (70)
T PF07191_consen   53 CNHCHGLISKKRVRFEF   69 (70)
T ss_dssp             -TTTT-EE-TTTSEEEE
T ss_pred             eccCCceeecceEEEEe
Confidence            999995   66666654

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=88.62  E-value=0.26  Score=45.93  Aligned_cols=59  Identities=20%  Similarity=0.459  Sum_probs=41.9

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHH
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREI  269 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i  269 (318)
                      ...|.||.++ +.|   +++..|||.|+..|+-.-.+ ....|-+|.+..--....-..++..+
T Consensus       196 PF~C~iCKkd-y~s---pvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G~f~V~~d~~kmL  254 (259)
T COG5152         196 PFLCGICKKD-YES---PVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATYGRFWVVSDLQKML  254 (259)
T ss_pred             ceeehhchhh-ccc---hhhhhcchhHHHHHHHHHhc-cCCcceecchhhccceeHHhhHHHHH
Confidence            4589999986 553   45778999999999887655 34789999998754333334455543

>PHA02862 5L protein; Provisional

Probab=88.52  E-value=0.33  Score=43.04  Aligned_cols=46  Identities=17%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             CCCCcccccccccCCceeEEcCCC-----CccchHHHHHHHhcC-CCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCrks~~  256 (318)
                      ...|=||.+. .  .++  .-||.     -..|++|+++|++.. ...||+|+..+.
T Consensus         2 ~diCWIC~~~-~--~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDV-C--DER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCc-C--CCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            4678899874 1  122  35764     569999999999753 456999999886

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.38  E-value=0.29  Score=47.71  Aligned_cols=65  Identities=20%  Similarity=0.414  Sum_probs=45.1

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATP  273 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~p  273 (318)
                      .....|-||.++ |.   ..++-.|||+|+..|...-++. ...|+||.+.+--....-..|...+...+
T Consensus       239 ~~Pf~c~icr~~-f~---~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g~~~~akeL~~~L~~kk  303 (313)
T KOG1813|consen  239 LLPFKCFICRKY-FY---RPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHGSFNVAKELLVSLKLKK  303 (313)
T ss_pred             cCCccccccccc-cc---cchhhcCCceeehhhhcccccc-CCcceecccccccccchHHHHHHHHHhhh
Confidence            345679999997 43   3567789999999999987763 47899999988643222233444444433

>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional

Probab=88.36  E-value=0.32  Score=40.74  Aligned_cols=35  Identities=26%  Similarity=0.685  Sum_probs=27.3

Q ss_pred             cceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021060          282 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       282 ~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      .....|++|+........  ...||.|||++...++|
T Consensus        68 p~~~~C~~Cg~~~~~~~~--~~~CP~Cgs~~~~i~~G  102 (113)
T PRK12380         68 PAQAWCWDCSQVVEIHQH--DAQCPHCHGERLRVDTG  102 (113)
T ss_pred             CcEEEcccCCCEEecCCc--CccCcCCCCCCcEEccC
Confidence            467889999987766422  23599999999998876

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.99  E-value=0.5  Score=47.33  Aligned_cols=66  Identities=23%  Similarity=0.450  Sum_probs=45.5

Q ss_pred             cceeeccccccccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          187 RCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       187 ~~C~s~~l~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      +.|....|-++-+=........|.||.+.    ..-+.++||||-++-.|......- ..-.||+||..+.
T Consensus        42 nlsaEPnlttsSaddtDEen~~C~ICA~~----~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          42 NLSAEPNLTTSSADDTDEENMNCQICAGS----TTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccCCccccccccccccccceeEEecCC----ceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            45555555444333334556799999984    345778999999999998775321 2356999998875

>PRK03681 hypA hydrogenase nickel incorporation protein; Validated

Probab=87.97  E-value=0.36  Score=40.50  Aligned_cols=36  Identities=17%  Similarity=0.480  Sum_probs=27.6

Q ss_pred             cceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021060          282 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       282 ~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      .+...|++|+.......+. ...||.|||++++.++|
T Consensus        68 p~~~~C~~Cg~~~~~~~~~-~~~CP~Cgs~~~~i~~G  103 (114)
T PRK03681         68 EAECWCETCQQYVTLLTQR-VRRCPQCHGDMLRIVAD  103 (114)
T ss_pred             CcEEEcccCCCeeecCCcc-CCcCcCcCCCCcEEccC
Confidence            5678899999876554222 14699999999999876

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.91  E-value=0.54  Score=45.10  Aligned_cols=54  Identities=26%  Similarity=0.507  Sum_probs=43.5

Q ss_pred             CCCCCCCcccccccccCCceeEEc-CCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          203 GAMHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      .+....||||.+.|-. ..+..+| ||||++..+|..+++.. ...+|++.+++.+.
T Consensus       218 ~s~ryiCpvtrd~LtN-t~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  218 ASKRYICPVTRDTLTN-TTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDR  272 (303)
T ss_pred             hccceecccchhhhcC-ccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCccc
Confidence            3456789999996544 5556665 99999999999999974 58899999999864

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=87.48  E-value=0.54  Score=42.17  Aligned_cols=47  Identities=26%  Similarity=0.582  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccCCceeEEcCCC--C---ccchHHHHHHHhcC-CCCCCCCCcccC
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREHH-QYACPICSKSVC  256 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCG--H---~fH~~Cl~~wl~~~-~~~CPiCrks~~  256 (318)
                      ++..|-||.+.-   +.  ..-||.  .   ..|++|++.|+..+ ..+||+|+..+.
T Consensus         7 ~~~~CRIC~~~~---~~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEY---DV--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCC---CC--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            467899998751   11  234764  3   56999999999753 456999998875

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=86.91  E-value=0.44  Score=33.51  Aligned_cols=42  Identities=29%  Similarity=0.698  Sum_probs=20.2

Q ss_pred             CcccccccccCCceeEEcCCCCccchHHHHHHHhcCC-CCCCCC
Q 021060          209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQ-YACPIC  251 (318)
Q Consensus       209 CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~-~~CPiC  251 (318)
                      |.+|.+ +.+.+..-....|+=.+|..|+..|++..+ .+||.|
T Consensus         1 C~~C~~-iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKE-IVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-S-B-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             Ccccch-hHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            556776 333222212224777899999999987643 369987

; PDB: 3NW0_A 2CT0_A.

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=85.99  E-value=0.33  Score=50.91  Aligned_cols=53  Identities=26%  Similarity=0.597  Sum_probs=42.6

Q ss_pred             ccCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc----CCCCCCCCCcccC
Q 021060          200 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH----HQYACPICSKSVC  256 (318)
Q Consensus       200 Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~----~~~~CPiCrks~~  256 (318)
                      =+|+..+..|-+|-+.    .+++..-.|.|.|++.|+.+|+..    .+.+||+|...+.
T Consensus       530 ~~enk~~~~C~lc~d~----aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  530 PDENKGEVECGLCHDP----AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             CccccCceeecccCCh----hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            3467778899999984    345677889999999999998753    4578999998875

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=85.98  E-value=0.36  Score=30.32  Aligned_cols=24  Identities=33%  Similarity=0.908  Sum_probs=18.1

Q ss_pred             eeecCCCCccccc-cccCcCCCCcc
Q 021060          121 QVICSLCGTEQKV-QQVCVNCGVCM  144 (318)
Q Consensus       121 ~v~C~~C~~eQ~v-~~~C~~Cg~~f  144 (318)
                      ++.|..|+++-+. +..|++||+.+
T Consensus         2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L   26 (26)
T PF13248_consen    2 EMFCPNCGAEIDPDAKFCPNCGAKL   26 (26)
T ss_pred             cCCCcccCCcCCcccccChhhCCCC
Confidence            4678899987444 57899999864

>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation

Probab=85.85  E-value=0.27  Score=41.07  Aligned_cols=36  Identities=25%  Similarity=0.521  Sum_probs=25.2

Q ss_pred             CcceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021060          281 KKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       281 ~~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      ..+...|++|+....+..+.  ..||.|+|++.+.++|
T Consensus        67 ~p~~~~C~~Cg~~~~~~~~~--~~CP~Cgs~~~~i~~G  102 (113)
T PF01155_consen   67 VPARARCRDCGHEFEPDEFD--FSCPRCGSPDVEIISG  102 (113)
T ss_dssp             E--EEEETTTS-EEECHHCC--HH-SSSSSS-EEEEES
T ss_pred             cCCcEECCCCCCEEecCCCC--CCCcCCcCCCcEEccC
Confidence            35678899999988776554  5799999999888776

The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=85.76  E-value=0.22  Score=49.13  Aligned_cols=49  Identities=29%  Similarity=0.673  Sum_probs=40.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ..+..|++|..||-+.   ..+.-|=|+|++.||.++|.. ...||.|.-.+.
T Consensus        13 n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih   61 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIH   61 (331)
T ss_pred             ccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHH-hccCCccceecc
Confidence            4467899999987663   335569999999999999985 688999998876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.37  E-value=0.61  Score=51.09  Aligned_cols=42  Identities=29%  Similarity=0.728  Sum_probs=31.3

Q ss_pred             CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .|..|--.|-   -|.+-..|||.||+.|+.    .+...||-|+-.+.
T Consensus       842 kCs~C~~~Ld---lP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  842 KCSACEGTLD---LPFVHFLCGHSYHQHCLE----DKEDKCPKCLPELR  883 (933)
T ss_pred             eecccCCccc---cceeeeecccHHHHHhhc----cCcccCCccchhhh
Confidence            6777764332   267777899999999999    23477999998543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.35  E-value=0.4  Score=35.03  Aligned_cols=32  Identities=34%  Similarity=0.760  Sum_probs=22.8

Q ss_pred             EcCCC-CccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          225 VLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       225 ~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+.|. |.++..|++.+++. +..||||.+++..
T Consensus        15 Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt   47 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT   47 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred             eeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence            66785 99999999999985 5889999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.77  E-value=0.38  Score=51.38  Aligned_cols=44  Identities=27%  Similarity=0.704  Sum_probs=36.2

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcc
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS  254 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks  254 (318)
                      ..|+||+..++.++...+.|-|||++++.|++...   +.+|| |..+
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly---n~scp-~~~D   55 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY---NASCP-TKRD   55 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh---hccCC-CCcc
Confidence            47999987778888888999999999999999874   36788 5543

>PRK04023 DNA polymerase II large subunit; Validated

Probab=84.69  E-value=0.78  Score=51.24  Aligned_cols=44  Identities=30%  Similarity=0.569  Sum_probs=21.6

Q ss_pred             cCcCCCCccceEecCccccccCCCCCCeeecCCCCceeecCCcceeeccCccc
Q 021060          136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC  188 (318)
Q Consensus       136 ~C~~Cg~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~  188 (318)
                      .|+.||......+|+.|.-.    ...+|.|+.||.--.     -..|.+||.
T Consensus       628 fCpsCG~~t~~frCP~CG~~----Te~i~fCP~CG~~~~-----~y~CPKCG~  671 (1121)
T PRK04023        628 KCPSCGKETFYRRCPFCGTH----TEPVYRCPRCGIEVE-----EDECEKCGR  671 (1121)
T ss_pred             cCCCCCCcCCcccCCCCCCC----CCcceeCccccCcCC-----CCcCCCCCC
Confidence            45555555555555555322    345556666643322     133555554

>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional

Probab=83.06  E-value=0.83  Score=38.90  Aligned_cols=37  Identities=30%  Similarity=0.573  Sum_probs=26.4

Q ss_pred             CcceEEcCCCCCCcccc-c---ee-eeccCCCCCCccccccCC
Q 021060          281 KKVWILCNDCGKTSNVQ-F---HV-LAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       281 ~~v~IlCnDC~~~s~v~-~---H~-lg~KC~~C~SyNT~~~~~  318 (318)
                      ..+...| +|+...... +   |+ ....||.|||++...++|
T Consensus        67 vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G  108 (124)
T PRK00762         67 IPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHILGG  108 (124)
T ss_pred             cCeeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEEecC
Confidence            3567889 999875432 1   11 235799999999998876

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.36  E-value=0.98  Score=37.92  Aligned_cols=26  Identities=35%  Similarity=0.953  Sum_probs=20.1

Q ss_pred             cccCcCCCCccceEecCccccccCCCCCCeeecCCCCc
Q 021060          134 QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGI  171 (318)
Q Consensus       134 ~~~C~~Cg~~f~~YfC~~Ckl~ddd~~k~~yHC~~Cgi  171 (318)
                      ...|++||+          |||  |.+|.+-.|++||.
T Consensus         9 KR~Cp~CG~----------kFY--DLnk~PivCP~CG~   34 (108)
T PF09538_consen    9 KRTCPSCGA----------KFY--DLNKDPIVCPKCGT   34 (108)
T ss_pred             cccCCCCcc----------hhc--cCCCCCccCCCCCC
Confidence            467999998          557  45688999999974

The function of members of this family is unknown.

>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]

Probab=81.04  E-value=1.3  Score=37.83  Aligned_cols=36  Identities=31%  Similarity=0.632  Sum_probs=29.1

Q ss_pred             CcceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021060          281 KKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       281 ~~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      .++.+.|-+|+......-|.+.  ||.|+|-|.++++|
T Consensus        67 ~p~~~~C~~C~~~~~~e~~~~~--CP~C~s~~~~i~~G  102 (115)
T COG0375          67 EPAECWCLDCGQEVELEELDYR--CPKCGSINLRIIGG  102 (115)
T ss_pred             eccEEEeccCCCeecchhheeE--CCCCCCCceEEecC
Confidence            3578899999887766655554  99999999999876

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=80.07  E-value=0.61  Score=44.61  Aligned_cols=51  Identities=25%  Similarity=0.621  Sum_probs=41.0

Q ss_pred             CCCCcccccccccCCceeEEc-C-CCCccchHHHHHHHhcCCCCCC--CCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVL-P-CGHTIHKNCLKEMREHHQYACP--ICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~L-p-CGH~fH~~Cl~~wl~~~~~~CP--iCrks~~  256 (318)
                      +..||||..+.+.+++-..++ | |=|.++.+|.+..++.+.-.||  -|.+-+.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            458999998888876533333 6 9999999999999988878899  8887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
2k2c_A	137	Solution Nmr Structure Of N-Terminal Domain Of Huma		1e-18
2dkt_A	143	Solution Structure Of The Chy Zinc Finger Domain Of		2e-18
2k2d_A	79	Solution Nmr Structure Of C-Terminal Domain Of Huma		3e-14
2ecm_A	55	Solution Structure Of The Ring Domain Of The Ring F		1e-04
2jrj_A	52	Solution Structure Of The Human Pirh2 Ring-H2 Domai		2e-04

>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 11/130 (8%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH+   NN +      H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRGCLLKAPCCDKLYTCRLCHD---NNED------HQLDRFKVKEVQCINCEKIQ 69
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
             QQ C  C    GEY+C+ C LFD D  KKQYH             +FFHC KC  C +
Sbjct: 70  HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 192 MLLKNSHPCV 201
           M L+  H C+
Sbjct: 128 MNLQGRHKCI 137

>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 18  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 68
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYS 191
             QQ C +C    GEY+C  C LFD D  K+QYH             +FFHC KC  C +
Sbjct: 69  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126
Query: 192 MLLKNSHPCVEGA 204
             L+  H C+E  
Sbjct: 127 TNLRGKHKCIESG 139

>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 40/65 (61%)
Query: 254 SVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 313
           S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT
Sbjct: 7   SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
Query: 314 RLTRG 318
               G
Sbjct: 67  AQAGG 71

>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICS 252
            CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+CS
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCS 50

>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 254
           E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S
Sbjct: 1   ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHS 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	2e-41
2k2d_A	79	Ring finger and CHY zinc finger domain- containing	4e-29
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-14
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	8e-04

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143

 Score =  140 bits (353), Expect = 2e-41
 Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 11/138 (7%)

Query: 69  MEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCG 128
              GC+HY R C ++APCC++++ CR CH+   +         H + R +V +V C  C 
Sbjct: 15  GPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNED---------HQLDRFKVKEVQCINCE 65

Query: 129 TEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRC 188
             Q  QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  
Sbjct: 66  KLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNL 123

Query: 189 CYSMLLKNSHPCVEGAMH 206
           C +  L+  H C+E    
Sbjct: 124 CLTTNLRGKHKCIESGPS 141

>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79

 Score =  105 bits (264), Expect = 4e-29
 Identities = 34/69 (49%), Positives = 40/69 (57%)

Query: 250 ICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCK 309
               S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+
Sbjct: 3   HMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICE 62

Query: 310 SYNTRLTRG 318
           SYNT    G
Sbjct: 63  SYNTAQAGG 71

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 203 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
            +    CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+CS   
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 195 KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 254
           +    C  G+    C +C     E  +DV + PCGH +  +CL   +E     CP C   
Sbjct: 321 QYELYCEMGSTFQLCKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCE 376

Query: 255 VCDMSKV 261
           +     +
Sbjct: 377 IKGTEPI 383

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYA--CPICSKSV 255
           CP+C E   E +    +L CGHTI + CL+++         CP CSK  
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
            C +C E L E     + LPC HT+ K C +   E     CP C
Sbjct: 17  QCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFC 56

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDR 267
           +CP+C E L     +     CG+ I + C   +R      CP C K   +   V++   +
Sbjct: 13  ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQ 72

Query: 268 E 268
           E
Sbjct: 73  E 73

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
            C  C E +F      I   C H + K+CL        ++CP C   +
Sbjct: 54  QCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 251
           C  C E +++     +   C H + K+CL+   +   ++CP C
Sbjct: 81  CVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPAC 119

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSVCDMS 259
           E  +H  C VC E  F+ R ++ + PC H  H+ CL + +       CP+C+  V  ++
Sbjct: 11  ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKV--CPLCNMPVLQLA 66

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 45/311 (14%), Positives = 79/311 (25%), Gaps = 108/311 (34%)

Query: 15  HHSSHQQFE--PMSTSCK------ADEIFSTPSYSHLAD--REFLVTEE-------STNH 57
           HH  H  FE        K       D          + D  +  L  EE           
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 58  NGS----TELLRKG------FME------YG--CQHYRRRCRIRAPCCNEIFDCRHCHNE 99
           +G+      LL K       F+E      Y       +   R  +       + R   + 
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DR 118

Query: 100 AMNNINVDQKLRHDIPRHE----VNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLF 155
             N+  V  K  +++ R +    + Q +  L    +  + V +  G  +           
Sbjct: 119 LYNDNQVFAK--YNVSRLQPYLKLRQALLEL----RPAKNVLI-DG--VL---------- 159

Query: 156 DDDTSKKQYHCDGCG-------ICRIGGCDNFF----------HCNKCRCCYSMLLKNSH 198
                       G G       +C                   +CN       ML K  +
Sbjct: 160 ------------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 199 ---PCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
              P       H   +  +    + Q  +        ++NCL  +              V
Sbjct: 208 QIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCLLVLLN------------V 253

Query: 256 CDMSKVWEKYD 266
            + +K W  ++
Sbjct: 254 QN-AKAWNAFN 263

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKE-MREHHQYACPICSKSV 255
            CP+CC   +        LPC H  HK C+   +++     CP+C    
Sbjct: 42  CCPICCS-EYVKGDVATELPCHHYFHKPCVSIWLQKSG--TCPVCRCMF 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2dkt_A	143	Ring finger and CHY zinc finger domain- containing	100.0
2k2d_A	79	Ring finger and CHY zinc finger domain- containing	99.93
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.33
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.24
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.24
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.22
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.21
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.21
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.18
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.17
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.15
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.13
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.1
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.06
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.06
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.03
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.02
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.02
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.0
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.99
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.98
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.98
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.96
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.96
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.92
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.92
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.9
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.9
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.88
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.87
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.84
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.83
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.82
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.82
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.82
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.81
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.8
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.8
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.8
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.79
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.77
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.77
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.76
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.71
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.69
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.69
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.54
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.5
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.5
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.47
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.47
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.46
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.46
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.46
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.43
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.43
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.41
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.32
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.31
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.31
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.25
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.23
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.2
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.11
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.08
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.87
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.82
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.69
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.47
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.41
3nw0_A	238	Non-structural maintenance of chromosomes element	96.11
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	90.9
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.92
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	88.27
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	87.99
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	87.89
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	87.73
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	87.03
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	82.95
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	80.27

>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A

Probab=100.00  E-value=1.9e-54  Score=372.10  Aligned_cols=135  Identities=41%  Similarity=1.022  Sum_probs=128.5

Q ss_pred             hhhccCCCccCCccccccceeEcCCCCCeecCcchHhhhhcCCCcCccCCCCCCCccCceeecCCCCccccccccCcCCC
Q 021060           62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCG  141 (318)
Q Consensus        62 ~~~~~~~~~~gC~HY~R~c~i~~pCC~~~y~Cr~CHde~~~~~~~~~~~~H~ldR~~v~~v~C~~C~~eQ~v~~~C~~Cg  141 (318)
                      ..+|++.+++||+||+|+|+|+||||++|||||+||||++         +|+++|+++++|+||+|+++|++++.|++||
T Consensus         8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg   78 (143)
T 2dkt_A            8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCS   78 (143)
T ss_dssp             CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred             cccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc---------ccccchhccceeeecccCccccccCcCCCCC
Confidence            4457788899999999999999999999999999999975         7999999999999999999999999999999


Q ss_pred             CccceEecCccccccCCCCCCeeecCCCCceeecCCcceeeccCccceeeccccccccccCCCCCC
Q 021060          142 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH  207 (318)
Q Consensus       142 ~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~Cie~~~~~  207 (318)
                      +.||+|||+||||||  ++|+||||++|||||+|+++|||||++||+|||++|+++|+|+|++++.
T Consensus        79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s  142 (143)
T 2dkt_A           79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS  142 (143)
T ss_dssp             CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred             ccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence            999999999999997  4699999999999999999999999999999999999999999998864

>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=99.93  E-value=1.1e-27  Score=187.62  Aligned_cols=71  Identities=48%  Similarity=0.832  Sum_probs=38.1

Q ss_pred             CCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021060          248 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       248 CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~  318 (318)
                      ||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus         1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G   71 (79)
T 2k2d_A            1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG   71 (79)
T ss_dssp             --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred             CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999976

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.33  E-value=9.1e-13  Score=92.88  Aligned_cols=52  Identities=38%  Similarity=0.911  Sum_probs=44.9

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +.+..||||++.+.++...+++++|||.||..|+.+|++.. .+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            45688999999876666778899999999999999999864 89999998764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.24  E-value=4.9e-12  Score=89.27  Aligned_cols=49  Identities=31%  Similarity=0.777  Sum_probs=41.0

Q ss_pred             CCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ...|+||++. +...+.++.++ |||.||..|+.+|++. +.+||+||+.+.
T Consensus         5 ~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            5789999997 44455677787 9999999999999975 689999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=5.1e-12  Score=97.32  Aligned_cols=52  Identities=19%  Similarity=0.436  Sum_probs=39.7

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ++..||||++++..+...+++++|||.||.+||.+||+. +.+||+||+++..
T Consensus        25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            356788888865443333444569999999999999985 5799999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6.7e-12  Score=93.79  Aligned_cols=56  Identities=34%  Similarity=0.776  Sum_probs=46.5

Q ss_pred             cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       201 ie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      .+...+..|+||++. +.....+++|||||.||..|+.+|++. +.+||+||+.+..+
T Consensus        10 ~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           10 KELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred             ccCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence            344567899999996 555667788899999999999999985 46999999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.21  E-value=8.7e-12  Score=91.98  Aligned_cols=53  Identities=28%  Similarity=0.659  Sum_probs=44.4

Q ss_pred             CCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          203 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ......|+||++. +.....++.+||||.||..|+.+|++. +.+||+||..+..
T Consensus        11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3456789999996 555567889999999999999999985 4789999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=4.6e-12  Score=95.28  Aligned_cols=52  Identities=35%  Similarity=0.715  Sum_probs=44.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .....|+||++. +.....++.|||||.||..|+.+|++. +.+||+||+.+..
T Consensus        21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            446789999996 555667889999999999999999985 5799999998865

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.18  E-value=1.3e-11  Score=99.39  Aligned_cols=55  Identities=27%  Similarity=0.469  Sum_probs=42.4

Q ss_pred             CCCCCCcccccccccCC--------------ceeEEcCCCCccchHHHHHHHh----cCCCCCCCCCcccCch
Q 021060          204 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKSVCDM  258 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~--------------~~v~~LpCGH~fH~~Cl~~wl~----~~~~~CPiCrks~~d~  258 (318)
                      ..+..||||++.|....              ..+++++|||.||..||.+|+.    ..+.+||+||+.+...
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            34578999999764321              2345889999999999999994    2357899999988754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=96.39  Aligned_cols=52  Identities=27%  Similarity=0.662  Sum_probs=43.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..|+||++. +.....++.|||||.||..|+.+|++. +.+||+||+.+..
T Consensus        38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            346789999996 555567888999999999999999984 5799999998753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.15  E-value=2.3e-11  Score=91.73  Aligned_cols=52  Identities=35%  Similarity=0.802  Sum_probs=43.9

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .....|+||++. +.....++.|+|||.||..||.+|++. +.+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (78)
T 2ect_A           13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred             CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence            346799999996 555567788999999999999999974 5899999999875

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.13  E-value=4.7e-11  Score=87.33  Aligned_cols=52  Identities=23%  Similarity=0.560  Sum_probs=42.2

Q ss_pred             CCCCccccc-ccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE-~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++ .+......+++++|||+||..|+.+|+.....+||+||+.+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            568999999 6555444446789999999999999976566789999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.12  E-value=2.7e-11  Score=89.33  Aligned_cols=53  Identities=25%  Similarity=0.664  Sum_probs=43.1

Q ss_pred             CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++.+.+.   ...++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence            4467899999975442   244588999999999999999985 4799999998864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=3e-11  Score=88.21  Aligned_cols=52  Identities=25%  Similarity=0.674  Sum_probs=42.3

Q ss_pred             CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .....||||++.+.+.   ...+++++|||.||..|+.+|++. +.+||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence            3467899999975442   234588999999999999999985 579999999875

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.10  E-value=4.5e-11  Score=86.05  Aligned_cols=51  Identities=25%  Similarity=0.699  Sum_probs=42.0

Q ss_pred             CCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++.+.+.   .+.++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   56 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence            56899999975442   244578999999999999999985 5899999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=89.30  Aligned_cols=53  Identities=34%  Similarity=0.706  Sum_probs=43.1

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC--CCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~d  257 (318)
                      ....||||++.+..+...+++++|||+||..|+.+|++..  ..+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            3578999999755544447889999999999999999753  4789999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.06  E-value=7.9e-11  Score=86.41  Aligned_cols=50  Identities=26%  Similarity=0.653  Sum_probs=41.6

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      ....||||++.+ .  .+++.+||||.||..|+.+|++. +.+||+||+.+...
T Consensus         4 ~~~~C~IC~~~~-~--~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDP-S--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCC-C--SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCccc-c--CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence            457899999963 3  24688999999999999999985 48999999998743

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.03  E-value=1.8e-10  Score=93.95  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=30.2

Q ss_pred             eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          222 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       222 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .++.++|||.||..||.+||+. +.+||+||+++.
T Consensus        67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            4678899999999999999985 689999999864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.02  E-value=3.8e-10  Score=85.02  Aligned_cols=50  Identities=16%  Similarity=0.472  Sum_probs=41.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++. +.   ++++++|||+|+..|+.+|++.++.+||+||+.+..
T Consensus         6 ~~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            346789999995 44   356779999999999999998657899999999863

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.02  E-value=3.8e-11  Score=92.75  Aligned_cols=59  Identities=29%  Similarity=0.632  Sum_probs=44.8

Q ss_pred             CCCCCcccccccccCCceeEEcC--CCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHh
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLP--CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY  265 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~Lp--CGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~l  265 (318)
                      .+..||||+|.+..  .++.++|  |||.|+..|+..++....+.||+||+.+......|+.+
T Consensus        10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~   70 (78)
T 1e4u_A           10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL   70 (78)
T ss_dssp             CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSC
T ss_pred             cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccC
Confidence            45789999996422  2344555  99999999999998656789999999998765545433

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.9e-10  Score=85.61  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=40.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .....||||++.+ .   ..+.+||||.||..|+.+|+.. ..+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            3457899999963 3   3567899999999999999975 5899999998864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=2.5e-10  Score=86.91  Aligned_cols=48  Identities=21%  Similarity=0.509  Sum_probs=40.0

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .....||||++.+ .   .+++++|||+||..|+.+|++. ..+||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAF-Q---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBC-C---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchh-c---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence            3456899999964 3   2457999999999999999975 589999999986

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3.8e-10  Score=83.64  Aligned_cols=50  Identities=26%  Similarity=0.775  Sum_probs=40.4

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~d  257 (318)
                      .....||||++. +.   .+++++|||.||..|+.+|++.  ...+||+||+.+..
T Consensus        18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            446789999995 43   3567799999999999999962  45789999998853

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3.3e-11  Score=89.07  Aligned_cols=50  Identities=22%  Similarity=0.725  Sum_probs=41.4

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchh
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS  259 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~  259 (318)
                      .....||||++. +..    +++||||.||..|+.+|+. .+.+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            346789999995 432    7899999999999999998 4689999999887543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=2.6e-10  Score=85.07  Aligned_cols=49  Identities=27%  Similarity=0.535  Sum_probs=39.7

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+..||||++.+.+   ++.+++|||+||..|+.+|++. +.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   62 (72)
T 2djb_A           14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ   62 (72)
T ss_dssp             GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred             CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence            35689999996433   4444599999999999999975 5899999998864

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.2e-10  Score=83.10  Aligned_cols=49  Identities=18%  Similarity=0.477  Sum_probs=39.8

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+..||||++. +.   ..+.++|||+||..|+.+|++..+.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           14 DKYKCEKCHLV-LC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCEECTTTCCE-ES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCCCCCCChH-hc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            35689999986 43   234589999999999999996556789999998864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.92  E-value=5.7e-10  Score=90.53  Aligned_cols=52  Identities=25%  Similarity=0.669  Sum_probs=42.6

Q ss_pred             CCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+..||||++.+.+.   .+.++.++|||+||..|+.+|++. +.+||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence            457899999975432   344588999999999999999985 5799999999874

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.92  E-value=3.7e-10  Score=84.98  Aligned_cols=51  Identities=22%  Similarity=0.636  Sum_probs=40.2

Q ss_pred             CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcC-CCCCCCCCcccCchh
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDMS  259 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d~~  259 (318)
                      .+..||||++. +.   .+++++ |||+||..||.+|++.. ..+||+||+.+...+
T Consensus        14 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           14 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             GGGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            35689999995 44   356688 99999999999999743 368999999876443

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.90  E-value=6.4e-10  Score=88.47  Aligned_cols=49  Identities=16%  Similarity=0.448  Sum_probs=40.0

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++. +.  +++..++|||.||..||.+|+.....+||+||.++..
T Consensus        22 ~~~C~IC~~~-~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEK-LR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSB-CS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCcc-cc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            4679999996 43  2444499999999999999998655799999999863

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.90  E-value=6.6e-10  Score=93.08  Aligned_cols=47  Identities=30%  Similarity=0.824  Sum_probs=39.6

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      ..||||++.+ .   .++++||||+||..|+..|+.. +.+||+||+++...
T Consensus        54 ~~C~iC~~~~-~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           54 LQCIICSEYF-I---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK  100 (138)
T ss_dssp             SBCTTTCSBC-S---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE
T ss_pred             CCCcccCccc-C---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC
Confidence            4699999964 3   3568899999999999999974 58899999999743

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.88  E-value=1.1e-09  Score=89.64  Aligned_cols=48  Identities=25%  Similarity=0.598  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++. +.   .++++||||+||..|+..|+.....+||+||+.+..
T Consensus        52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4579999995 44   356789999999999999998666799999999964

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.3e-09  Score=78.92  Aligned_cols=44  Identities=25%  Similarity=0.850  Sum_probs=35.6

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC  251 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC  251 (318)
                      ..+..||||++. +.   ++++++|||+||..|+.+|++.  ...+||+|
T Consensus        18 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            346789999995 43   3567799999999999999974  45789998

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.8e-09  Score=83.84  Aligned_cols=53  Identities=19%  Similarity=0.518  Sum_probs=41.5

Q ss_pred             CCCCCCCcccccccccCCceeEEcCCC-----CccchHHHHHHHhcC-CCCCCCCCcccCc
Q 021060          203 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVCD  257 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCrks~~d  257 (318)
                      .+....|+||++. ++...+ +++||+     |.||..||++||... ..+||+||..+..
T Consensus        12 ~~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           12 PSSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CTTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3456789999986 443444 479996     999999999999763 3689999998863

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.83  E-value=2.5e-09  Score=80.65  Aligned_cols=49  Identities=22%  Similarity=0.619  Sum_probs=39.9

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC-----CCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-----~~~CPiCrks~~d  257 (318)
                      ....||||++. +.   ..++++|||+||..|+..|+...     ...||+||..+..
T Consensus        18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            35789999996 43   24578999999999999998752     5789999998863

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.82  E-value=6.1e-10  Score=83.56  Aligned_cols=49  Identities=27%  Similarity=0.756  Sum_probs=39.9

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC------CCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~------~~~CPiCrks~~d  257 (318)
                      .+..||||++. +.   .++++||||+||..|+.+|+...      ..+||+||..+..
T Consensus        11 ~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           11 EEVTCPICLEL-LT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCEETTTTEE-CS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cCCCCcCCCcc-cC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            35789999996 44   24568999999999999999752      5789999998864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2e-09  Score=76.13  Aligned_cols=43  Identities=35%  Similarity=1.061  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCC
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC  251 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC  251 (318)
                      ....||||++.+ .   ..++++|||+||..|+.+|+..  ...+||+|
T Consensus        14 ~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYL-K---EPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBC-S---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCccc-C---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            457899999964 3   2356899999999999999653  56789998

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.82  E-value=5.1e-10  Score=93.07  Aligned_cols=50  Identities=18%  Similarity=0.493  Sum_probs=0.5

Q ss_pred             CCCCcccccccccC--------------CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFET--------------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s--------------~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +..|+||++.+.+.              ...++.++|||.||..||.+||+. +.+||+||+++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            46889998875321              123455799999999999999985 689999999864

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.81  E-value=2.5e-09  Score=84.25  Aligned_cols=48  Identities=27%  Similarity=0.751  Sum_probs=39.0

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ...||||++. +..  ++.+++|||+||..|+..|+.. +.+||+||..+..
T Consensus        22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred             CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence            4689999995 432  4444599999999999999984 5899999999873

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.80  E-value=2.4e-09  Score=82.98  Aligned_cols=48  Identities=23%  Similarity=0.690  Sum_probs=39.2

Q ss_pred             CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      .+..||||++. +.   +++++| |||+|+..||.+|+.. ....||+||+.+.
T Consensus        12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            45789999985 44   356789 9999999999999864 3478999999973

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.80  E-value=3e-09  Score=85.19  Aligned_cols=48  Identities=31%  Similarity=0.714  Sum_probs=39.6

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++. +.  +++.+++|||+||..|+..|+.. +.+||+||..+..
T Consensus        15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK   62 (108)
T ss_dssp             GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred             cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence            5689999995 43  24555599999999999999985 5899999999874

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=2.8e-09  Score=80.34  Aligned_cols=50  Identities=28%  Similarity=0.727  Sum_probs=40.4

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-----CCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-----~~~~CPiCrks~~d  257 (318)
                      .....||||++. +.   ..+.++|||+||..|+..|+..     ....||+||..+..
T Consensus        17 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLEL-LT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSC-CS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcc-cC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            346789999995 43   2456899999999999999875     25789999998863

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.79  E-value=3.3e-09  Score=90.90  Aligned_cols=49  Identities=20%  Similarity=0.605  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++. +.  +++.+++|||+||..|+..|+......||+||..+..
T Consensus        54 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDM-LK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCcccChH-hh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3489999996 44  2555569999999999999998657889999999853

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.77  E-value=1.5e-09  Score=87.77  Aligned_cols=48  Identities=33%  Similarity=0.854  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++.+ .   .++.|+|||+||..|+..|+.....+||+||+.+..
T Consensus        15 ~~~C~iC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEIL-V---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBC-S---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCccc-C---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            45799999864 3   356789999999999999997657899999999863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.77  E-value=2.8e-09  Score=86.24  Aligned_cols=48  Identities=19%  Similarity=0.475  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++. +.   +++.++|||+||..|+.+|+.....+||+||..+..
T Consensus        23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            4679999985 43   345689999999999999998656789999999874

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.76  E-value=2.3e-09  Score=91.69  Aligned_cols=48  Identities=23%  Similarity=0.607  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ...||||++. +.   .++++||||+||..|+..|+.....+||+||..+..
T Consensus        78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence            4679999995 43   356689999999999999998666789999999874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.71  E-value=6e-09  Score=84.42  Aligned_cols=53  Identities=25%  Similarity=0.664  Sum_probs=42.7

Q ss_pred             CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .....||||++.+...   ...++.++|||.||..|+.+|++. +.+||+||.++..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence            4467899999965431   234578899999999999999985 5799999999874

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.69  E-value=7.2e-09  Score=84.40  Aligned_cols=48  Identities=23%  Similarity=0.674  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++. +.   ..+.++|||+||..|+.+|++....+||+||+.+..
T Consensus        18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            5689999985 43   246789999999999999998655699999999875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.69  E-value=7.3e-09  Score=82.53  Aligned_cols=47  Identities=23%  Similarity=0.754  Sum_probs=38.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC--CCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~  256 (318)
                      ...||||++. +.   .++.++|||+||..|+..|+...  ..+||+||..+.
T Consensus        21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            4579999995 43   24568999999999999999743  258999999886

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.55  E-value=3.1e-08  Score=73.11  Aligned_cols=50  Identities=18%  Similarity=0.485  Sum_probs=39.6

Q ss_pred             CCCCCCCcccccccccCCceeEEc--CCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          203 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ...+..|+||++..    .+++++  ||||. |+..|+..|++. +..||+||..+..
T Consensus         5 ~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   57 (64)
T 2vje_A            5 LNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM   57 (64)
T ss_dssp             CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred             CCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence            34567899999852    234555  99999 899999999874 5789999998864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.54  E-value=7.3e-08  Score=87.02  Aligned_cols=52  Identities=12%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             CCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +......||||++. +.   +++++||||+|++.||..|+.....+||+||.++..
T Consensus       204 ~~~~~~~c~i~~~~-~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          204 DIPDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCCSTTBCTTTCSB-CS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCcccCCcCcCCH-hc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            34557789999994 54   467899999999999999998655669999999863

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.50  E-value=6.3e-08  Score=75.21  Aligned_cols=49  Identities=12%  Similarity=0.202  Sum_probs=41.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++. +.   ++++++|||+|.+.||.+|+.. +.+||+|+..+..
T Consensus        12 p~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~   60 (85)
T 2kr4_A           12 PDEFRDPLMDTL-MT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE   60 (85)
T ss_dssp             CTTTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred             chheECcccCch-hc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence            346789999994 54   4678899999999999999984 6899999998863

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.50  E-value=2.1e-08  Score=71.85  Aligned_cols=45  Identities=29%  Similarity=0.566  Sum_probs=36.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      .....|+||++. +.   .+++|||||+|+..|+.+|    ..+||+||+.+.
T Consensus         4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence            346789999985 44   3468999999999999884    468999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.47  E-value=2.7e-08  Score=84.31  Aligned_cols=47  Identities=19%  Similarity=0.448  Sum_probs=38.8

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCccc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV  255 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~  255 (318)
                      .+..||||++. +.   +.+.++|||+|+..||.+|++....+||+||+.+
T Consensus        30 ~~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           30 AKYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            35689999995 43   2466899999999999999986656899999975

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.47  E-value=5.2e-08  Score=71.64  Aligned_cols=49  Identities=22%  Similarity=0.570  Sum_probs=38.6

Q ss_pred             CCCCCCcccccccccCCceeEEc--CCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .....|+||++..    .+.+++  ||||. |+..|+..|.+. +.+||+||+.+..
T Consensus         5 ~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   56 (63)
T 2vje_B            5 NLLKPCSLCEKRP----RDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL   56 (63)
T ss_dssp             GGGSBCTTTSSSB----SCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred             CcCCCCcccCCcC----CCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence            3467899999852    223444  99998 999999999874 4789999998864

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.46  E-value=1.1e-07  Score=76.33  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=41.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++. +.   +++++||||+|.+.||..|+. .+.+||+|+.++..
T Consensus        27 p~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTL-MT---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSB-CS---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCc-cc---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh
Confidence            346789999994 54   467889999999999999998 46899999999863

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.46  E-value=3.2e-08  Score=80.46  Aligned_cols=44  Identities=23%  Similarity=0.663  Sum_probs=37.1

Q ss_pred             CCCCcccccccccCCceeEEc-CCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +..||||++. +.   .++++ +|||+||..|+..|+.   ..||+||..+.
T Consensus        22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred             CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence            5789999985 44   24556 9999999999999986   78999999985

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.46  E-value=5.8e-08  Score=73.25  Aligned_cols=43  Identities=26%  Similarity=0.739  Sum_probs=36.3

Q ss_pred             CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..|+||++.+ .   .++++||||. |+..|+..|     .+||+||+.+..
T Consensus        24 ~~~C~iC~~~~-~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRN-I---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSB-C---CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCC-C---CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            46799999853 2   4678899999 999999998     579999998864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.2e-07  Score=72.99  Aligned_cols=49  Identities=18%  Similarity=0.453  Sum_probs=38.3

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC-CCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d  257 (318)
                      ..+|+||.+. +...  ..-..|+|.||..||.+||+.. +.+||+||..+..
T Consensus        15 i~~C~IC~~~-i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSL-LIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCB-CSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhH-cccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            4789999985 4433  3334899999999999999753 2789999998864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.43  E-value=1.5e-07  Score=75.30  Aligned_cols=49  Identities=14%  Similarity=0.178  Sum_probs=41.3

Q ss_pred             CCCCCCcccccccccCCceeEEcCCC-CccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++. +.   ++++++|| |+|.+.||.+|+.. +.+||+||..+..
T Consensus        20 p~~~~CpI~~~~-m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~   69 (98)
T 1wgm_A           20 CDEFLDPIMSTL-MC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM   69 (98)
T ss_dssp             CTTTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred             cHhcCCcCcccc-cc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence            346789999994 54   46789999 99999999999985 6899999999863

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=81.75  Aligned_cols=48  Identities=23%  Similarity=0.674  Sum_probs=40.0

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ...||||++. +.   +++.++|||+|+..|+.+|+.....+||+||..+..
T Consensus        18 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            5689999995 43   245689999999999999997655699999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.32  E-value=3.2e-07  Score=90.07  Aligned_cols=49  Identities=31%  Similarity=0.736  Sum_probs=41.0

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ....|+||++.+    ..++.+||||.||..|+..|+.....+||+||..+..
T Consensus       331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            346899999853    3467899999999999999997456889999998864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=4.9e-07  Score=71.20  Aligned_cols=46  Identities=28%  Similarity=0.608  Sum_probs=36.8

Q ss_pred             CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcC-----CCCCCC--CCcc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS  254 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-----~~~CPi--Crks  254 (318)
                      .+..||||++. |.   ++++++ |||+|.+.||.+|+...     ..+||+  |++.
T Consensus         6 ~~~~CPI~~~~-~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEE-MK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSB-CS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCch-hc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            45789999984 55   356675 99999999999999742     468999  9866

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.31  E-value=6.3e-07  Score=70.07  Aligned_cols=49  Identities=24%  Similarity=0.524  Sum_probs=37.2

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-------CCCCCCC--CCcc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPI--CSKS  254 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPi--Crks  254 (318)
                      ....|+||++. +.....+.+.+|||.|+..|+.+|+..       ...+||.  |+..
T Consensus         4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35689999996 443333344589999999999999863       1357999  9998

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=4.2e-07  Score=68.46  Aligned_cols=43  Identities=26%  Similarity=0.738  Sum_probs=34.8

Q ss_pred             CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ...|+||++. +.   .++++||||. |+..|+..+     ..||+||+.+..
T Consensus        25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            3579999985 33   4678999999 999999643     579999998865

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=7.5e-07  Score=66.58  Aligned_cols=46  Identities=33%  Similarity=0.762  Sum_probs=37.6

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      .....|+||++.    ...+++|||||. |+..|+...     ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhce
Confidence            446789999984    235789999999 999999842     5799999998754

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.20  E-value=1.4e-06  Score=77.13  Aligned_cols=50  Identities=12%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++. +.   +++++||||+|.+.||..|+.....+||+|+.++..
T Consensus       104 p~~f~CPI~~el-m~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCcccc-CC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            346789999994 54   467789999999999999997543479999998863

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.11  E-value=8.4e-07  Score=68.07  Aligned_cols=44  Identities=34%  Similarity=0.836  Sum_probs=36.4

Q ss_pred             CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      +..|+||++. +   ..++++||||. |+..|+..|.     .||+||..+...
T Consensus        18 ~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEE-E---INSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSS-B---CCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred             CCEeEEeCcc-c---CcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence            3579999985 2   35788999999 9999999872     799999998753

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.08  E-value=1.6e-06  Score=63.69  Aligned_cols=51  Identities=25%  Similarity=0.513  Sum_probs=38.8

Q ss_pred             CCCCCCCCcccccccccCCceeEEcCCC--C---ccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          202 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~~~v~~LpCG--H---~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      |......|.||++. .  ..+ .++||.  +   .||..||.+|+.. ++.+||+|+..+.
T Consensus         2 e~~~~~~CrIC~~~-~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            2 EDEDVPVCWICNEE-L--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEE-C--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCEeEEeecC-C--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            44567789999985 2  223 368965  4   8999999999974 4678999998764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.87  E-value=5.5e-06  Score=77.67  Aligned_cols=50  Identities=24%  Similarity=0.664  Sum_probs=40.4

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCC--CCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPi--Crks~~  256 (318)
                      ..+..||||++. |.  +||....|||+|.+.||.+|+.. +..+||+  |++.+.
T Consensus       179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            346789999996 43  36666799999999999999874 3467999  999876

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.82  E-value=3.9e-06  Score=81.64  Aligned_cols=53  Identities=21%  Similarity=0.439  Sum_probs=39.1

Q ss_pred             CCCCCCcccccccccCCcee----EEcCCCCccchHHHHHHHhcCC----------CCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDV----IVLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v----~~LpCGH~fH~~Cl~~wl~~~~----------~~CPiCrks~~  256 (318)
                      ....+|+||++.+.+++.-+    .-++|||.||..|+.+|+.+..          ..||.||.++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            45679999999755423211    1358999999999999996411          36999999875

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.69  E-value=9e-06  Score=78.47  Aligned_cols=43  Identities=30%  Similarity=0.834  Sum_probs=36.4

Q ss_pred             CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..|+||++. +.   .++.|||||. |+..|+..|     ..||+||..+..
T Consensus       295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            4689999995 33   4778899999 999999988     569999998864

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.47  E-value=8.1e-05  Score=60.46  Aligned_cols=49  Identities=22%  Similarity=0.419  Sum_probs=39.5

Q ss_pred             CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchh
Q 021060          208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS  259 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~  259 (318)
                      -|++|.-++.   ...+.+||+|+|+.+|+..|.+.+..+||+|+.++.+.+
T Consensus         3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe   51 (101)
T 3vk6_A            3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE   51 (101)
T ss_dssp             BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred             ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence            4778875432   356789999999999999998767789999999998643

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.41  E-value=8.6e-05  Score=54.41  Aligned_cols=48  Identities=13%  Similarity=0.153  Sum_probs=37.5

Q ss_pred             CCCCCcccccccccCCceeEEc-CCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +...|||+++. +.   +.+++ ++||+|-+.+|.+|++. +.+||+.+..+..
T Consensus         2 ~~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~   50 (61)
T 2bay_A            2 SHMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI   50 (61)
T ss_dssp             --CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred             CeEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence            35689999995 44   24555 99999999999999975 4679999998863

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.11  E-value=0.0027  Score=58.17  Aligned_cols=49  Identities=20%  Similarity=0.510  Sum_probs=36.2

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC-CCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d  257 (318)
                      -..|.||.+-+..   ...=..|+|.||..|+..|++.. +.+||.|+..|..
T Consensus       180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            4578999885432   22223499999999999998753 4689999998763

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=90.90  E-value=0.084  Score=41.19  Aligned_cols=33  Identities=24%  Similarity=0.724  Sum_probs=17.8

Q ss_pred             ecCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021060          123 ICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF  155 (318)
Q Consensus       123 ~C~~C~~eQ~v~~~C~~Cg~~f--------~~YfC~~Ckl~  155 (318)
                      .|..|+..-+....||.||.++        ..|||..|+=.
T Consensus        20 ~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~L   60 (81)
T 2jrp_A           20 HCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGL   60 (81)
T ss_dssp             ECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred             ECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence            3555554433333455544444        37888888644

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.92  E-value=0.12  Score=39.99  Aligned_cols=33  Identities=21%  Similarity=0.423  Sum_probs=24.7

Q ss_pred             CCCCcccccccccCCceeEE-cCCCCccchHHHHHH
Q 021060          206 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEM  240 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~w  240 (318)
                      +..|+||++..+.  .++.. +.|+|+|+..|+..+
T Consensus         3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence            4679999974333  23333 999999999999984

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=87.99  E-value=0.22  Score=40.23  Aligned_cols=33  Identities=24%  Similarity=0.692  Sum_probs=17.8

Q ss_pred             ecCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021060          123 ICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF  155 (318)
Q Consensus       123 ~C~~C~~eQ~v~~~C~~Cg~~f--------~~YfC~~Ckl~  155 (318)
                      .|..|+..-.....||.|+.++        +.|||..|+=.
T Consensus        50 hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL   90 (101)
T 2jne_A           50 RCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL   90 (101)
T ss_dssp             EETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred             ECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence            3555544444444455555544        57777777633

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=87.89  E-value=0.71  Score=39.30  Aligned_cols=50  Identities=22%  Similarity=0.446  Sum_probs=34.6

Q ss_pred             cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHh----------cCCCCCCCCCcc
Q 021060          201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----------HHQYACPICSKS  254 (318)
Q Consensus       201 ie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~----------~~~~~CPiCrks  254 (318)
                      .+...+..|.||.+-    ++-+.-=.|.-+||..|+..-+.          .+.-.||+|+..
T Consensus        58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~  117 (142)
T 2lbm_A           58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE  117 (142)
T ss_dssp             CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred             cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence            356678899999972    32111126889999999996542          245679999954

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=87.73  E-value=0.19  Score=42.28  Aligned_cols=37  Identities=22%  Similarity=0.621  Sum_probs=29.6

Q ss_pred             cceEEcCCCCCCccc-------------cceee------eccCCCCCCccccccCC
Q 021060          282 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG  318 (318)
Q Consensus       282 ~v~IlCnDC~~~s~v-------------~~H~l------g~KC~~C~SyNT~~~~~  318 (318)
                      .+...|.+|+.....             .+|++      ..+||.|||++..+++|
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G  123 (139)
T 3a43_A           68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG  123 (139)
T ss_dssp             CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred             CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence            467899999986532             56776      68999999999987765

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=87.03  E-value=0.24  Score=39.51  Aligned_cols=83  Identities=22%  Similarity=0.540  Sum_probs=43.1

Q ss_pred             CCCceeecCC-cceeeccCccceee-----cccc----ccccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHH
Q 021060          168 GCGICRIGGC-DNFFHCNKCRCCYS-----MLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL  237 (318)
Q Consensus       168 ~CgiCR~G~~-~~ffHC~~C~~C~s-----~~l~----~~H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl  237 (318)
                      .|.||..+|. ++...|+.|+.-|-     ..+.    ..=.|.+=   ..|.||.+. .+...-+.--.|.-.||..|+
T Consensus         9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl   84 (111)
T 2ysm_A            9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL   84 (111)
T ss_dssp             CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred             CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence            4555655552 45666777665442     2221    11112210   146777753 111111112268899999999


Q ss_pred             HHHHhc---CCCCCCCCCcc
Q 021060          238 KEMREH---HQYACPICSKS  254 (318)
Q Consensus       238 ~~wl~~---~~~~CPiCrks  254 (318)
                      .+-+..   +...||.|+.-
T Consensus        85 ~ppl~~~P~g~W~C~~C~~c  104 (111)
T 2ysm_A           85 QPVMKSVPTNGWKCKNCRIC  104 (111)
T ss_dssp             SSCCSSCCSSCCCCHHHHCC
T ss_pred             CCccccCCCCCcCCcCCcCc
Confidence            875442   34668888653

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=82.95  E-value=0.53  Score=38.19  Aligned_cols=36  Identities=33%  Similarity=0.618  Sum_probs=28.4

Q ss_pred             CcceEEcCCCCCCccccceeeec-cCCCCCCccccccCC
Q 021060          281 KKVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG  318 (318)
Q Consensus       281 ~~v~IlCnDC~~~s~v~~H~lg~-KC~~C~SyNT~~~~~  318 (318)
                      ..+...|.+|+......-  ... +||.|+|.++++++|
T Consensus        70 ~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G  106 (119)
T 2kdx_A           70 EKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQG  106 (119)
T ss_dssp             ECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEES
T ss_pred             ccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecC
Confidence            346789999998876542  246 899999999998876

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=80.27  E-value=0.33  Score=39.01  Aligned_cols=74  Identities=18%  Similarity=0.459  Sum_probs=41.4

Q ss_pred             CCcceeeccCccceeecc-c-----------cccccccCCCCCCCCcccccccccCCceeEE-cCCCCccchHHHHHHHh
Q 021060          176 GCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE  242 (318)
Q Consensus       176 ~~~~ffHC~~C~~C~s~~-l-----------~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~  242 (318)
                      .+++...|..|+.-|-.+ |           ...=.|.+=   ..|.||.+. ......++. -.|...||..|+.+-|.
T Consensus        22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~-~~~~~~ll~Cd~C~~~yH~~Cl~p~l~   97 (112)
T 3v43_A           22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQ-GKNADNMLFCDSCDRGFHMECCDPPLT   97 (112)
T ss_dssp             CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCC-CCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred             CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCc-CCCccceEEcCCCCCeeecccCCCCCC
Confidence            356777777777655322 1           122233321   157788752 111111111 25889999999987554


Q ss_pred             c---CCCCCCCCCc
Q 021060          243 H---HQYACPICSK  253 (318)
Q Consensus       243 ~---~~~~CPiCrk  253 (318)
                      .   +...||.|+.
T Consensus        98 ~~P~~~W~C~~C~~  111 (112)
T 3v43_A           98 RMPKGMWICQICRP  111 (112)
T ss_dssp             SCCSSCCCCTTTSC
T ss_pred             CCCCCCeECCCCCC
Confidence            2   3467999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d2dkta2	56	g.93.1.1 (A:82-137) RING finger and CHY zinc finge	2e-20
d2dkta1	74	g.89.1.1 (A:8-81) RING finger and CHY zinc finger	4e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	9e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	7e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.001
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	0.004
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.004

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (200), Expect = 2e-20
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 145 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE 202
           GEY+C  C LFD D  K+QYHC+ CGICRIG  ++FFHC KC  C +  L+  H C+E
Sbjct: 1   GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE 56

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (141), Expect = 4e-12
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 71  YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
            GC+HY R C ++APCC++++ CR CH+             H + R +V +V C  C   
Sbjct: 10  RGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKL 60

Query: 131 QKVQQVCVNCGV 142
           Q  QQ C +C  
Sbjct: 61  QHAQQTCEDCST 72

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
           C +C     E  +DV + PCGH +  +CL   +E     CP C   +
Sbjct: 26  CKIC----AENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 7e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
           +CP+C E L     +     CG+ I + C   +R      CP C K  
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
           CP+C E         + LPC H     C+      +   CP+C   V
Sbjct: 8   CPICLEDP---SNYSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPV 50

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.004
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 8/47 (17%)

Query: 209 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255
           C  C        +   +LPC HT+   CL    E     CPIC    
Sbjct: 9   CQQCQAEA----KCPKLLPCLHTLCSGCL----EASGMQCPICQAPW 47

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQ--YACPICSKSV 255
           +CP+C E +    ++ +   C H   K C+ ++    +    CP+C   +
Sbjct: 23  ECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d2dkta2	56	RING finger and CHY zinc finger domain-containing	99.95
d2dkta1	74	RING finger and CHY zinc finger domain-containing	99.72
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.36
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.28
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.26
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.23
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.17
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.15
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.12
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.93
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.86
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.84
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.74
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.74
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.69
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.66
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.63
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.23
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.05
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	89.05
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	88.97
d2dkta2	56	RING finger and CHY zinc finger domain-containing	81.56
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	80.71
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	80.36

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-29  Score=183.67  Aligned_cols=56  Identities=57%  Similarity=1.394  Sum_probs=54.1

Q ss_pred             ceEecCccccccCCCCCCeeecCCCCceeecCCcceeeccCccceeeccccccccccC
Q 021060          145 GEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE  202 (318)
Q Consensus       145 ~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~Cie  202 (318)
                      |+|||+||||||||  |+||||++|||||+|++++||||++||+||+++|+++|+|+|
T Consensus         1 G~YfC~iC~l~ddd--k~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECS--SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CceECCcCCcccCC--CCcccCCCCCceeecCCccccccCccccccCcccCCCccccC
Confidence            68999999999885  999999999999999999999999999999999999999997

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.8e-18  Score=131.44  Aligned_cols=73  Identities=34%  Similarity=0.854  Sum_probs=68.7

Q ss_pred             hhccCCCccCCccccccceeEcCCCCCeecCcchHhhhhcCCCcCccCCCCCCCccCceeecCCCCccccccccCcCCCC
Q 021060           63 LLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGV  142 (318)
Q Consensus        63 ~~~~~~~~~gC~HY~R~c~i~~pCC~~~y~Cr~CHde~~~~~~~~~~~~H~ldR~~v~~v~C~~C~~eQ~v~~~C~~Cg~  142 (318)
                      ++|...+.+||+||+|+|+|+|++||++|+|+.||+++.         .|.++|++++.++|..|+++|++.+.|++||.
T Consensus         2 ~~~~~~~~~gC~HY~r~~~l~C~~Cg~~~~C~~C~~~lt---------~H~~~~k~~~~l~CH~Cg~~~~~~~~C~~Cgs   72 (74)
T d2dkta1           2 VRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCST   72 (74)
T ss_dssp             CCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSCC
T ss_pred             ccCCCCCCCCCcccCcceEEEcCcCcCeeeCCCCCCccc---------ccccccccCCEEEeccCCCcccCCCcCCCCCC
Confidence            357788889999999999999999999999999999976         69999999999999999999999999999999


Q ss_pred             cc
Q 021060          143 CM  144 (318)
Q Consensus       143 ~f  144 (318)
                      .|
T Consensus        73 ~F   74 (74)
T d2dkta1          73 LF   74 (74)
T ss_dssp             BS
T ss_pred             CC
Confidence            87

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.7e-14  Score=98.42  Aligned_cols=50  Identities=28%  Similarity=0.634  Sum_probs=41.2

Q ss_pred             CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +||||++++......+.+++|||.||..|+.+|++..+.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999998655444456679999999999999998766789999998853

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.28  E-value=9.8e-13  Score=93.88  Aligned_cols=49  Identities=29%  Similarity=0.719  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCCceeEEc-CCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ...||||+++ +..++.+..+ +|||.||..|+.+|++. +.+||+||+++.
T Consensus         5 ~~~C~ICl~~-~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCeEECcc-ccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEeE
Confidence            3569999997 4445567666 59999999999999985 689999999874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=95.35  Aligned_cols=52  Identities=23%  Similarity=0.607  Sum_probs=42.4

Q ss_pred             CCCCcccccccccCCc-eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          206 HHDCPVCCEYLFETRQ-DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~-~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      +..||||++.++.+.+ .+++++|||.||..|+.+|++..+.+||+||+.+..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            5789999997655443 345679999999999999997666789999998853

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.23  E-value=1.9e-12  Score=95.42  Aligned_cols=51  Identities=25%  Similarity=0.624  Sum_probs=42.1

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM  258 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~  258 (318)
                      +....||||++.+.   ++++.+||||.||..|+.+|++. +.+||+||..+.++
T Consensus         3 ~~~d~C~IC~~~~~---~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~~   53 (68)
T d1chca_           3 TVAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred             CCCCCCccCCcCcc---CCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHhh
Confidence            34578999999743   25678999999999999999985 57899999988643

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=6.5e-12  Score=100.19  Aligned_cols=56  Identities=27%  Similarity=0.437  Sum_probs=43.4

Q ss_pred             CCCCCCCcccccccccC--------------CceeEEcCCCCccchHHHHHHHhcC----CCCCCCCCcccCch
Q 021060          203 GAMHHDCPVCCEYLFET--------------RQDVIVLPCGHTIHKNCLKEMREHH----QYACPICSKSVCDM  258 (318)
Q Consensus       203 ~~~~~~CpIClE~lf~s--------------~~~v~~LpCGH~fH~~Cl~~wl~~~----~~~CPiCrks~~d~  258 (318)
                      ...+..|+||++.|...              ...+.+++|||.||..||.+||+..    +.+||+||..+...
T Consensus        22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            34467899999987432              2345678999999999999999753    35899999988653

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.2e-11  Score=93.77  Aligned_cols=49  Identities=31%  Similarity=0.731  Sum_probs=40.9

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ....||||++. +.   .++++||||.||..|+..|+..+..+||+||+.+..
T Consensus        22 ~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          22 TFQLCKICAEN-DK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             CTTBCTTTSSS-BC---CEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCCccCCCc-CC---CeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            34569999985 33   467899999999999999997556789999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.2e-11  Score=93.78  Aligned_cols=52  Identities=17%  Similarity=0.463  Sum_probs=39.7

Q ss_pred             CCCCCccccccccc--------------CCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          205 MHHDCPVCCEYLFE--------------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       205 ~~~~CpIClE~lf~--------------s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .+.+|+||++.+..              ....++.++|||.||..||.+||+. +.+||+||+.+..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   85 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF   85 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCcccc
Confidence            35668888765432              1224678899999999999999985 6889999998863

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.7e-10  Score=88.16  Aligned_cols=47  Identities=19%  Similarity=0.487  Sum_probs=39.8

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..||||+|. +.   ++++++|||+|+..|+.+|++..+.+||+||.++..
T Consensus        24 l~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          24 ISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             TBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCccCCcc-hh---cceecCCCChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            479999995 43   367889999999999999997666789999998864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-10  Score=88.32  Aligned_cols=46  Identities=24%  Similarity=0.786  Sum_probs=37.8

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC--CCCCCCCCcccC
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC  256 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~  256 (318)
                      ..||||++. +.   +++.++|||+||..||.+|+...  ...||+||+++.
T Consensus        22 l~CpIC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          22 LECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             TSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCCCccCch-hC---CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            579999985 44   24568999999999999999653  257999999885

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.6e-09  Score=81.38  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++ ++.   ++++++|||+|++.||.+|+...+.+||+||.++..
T Consensus         5 P~~l~CpIc~~-l~~---dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCS-BCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCc-hhh---hhcccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            45678999998 454   356889999999999999997666789999998863

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.8e-09  Score=76.48  Aligned_cols=46  Identities=13%  Similarity=0.158  Sum_probs=37.6

Q ss_pred             CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      .||||++. +.  +++....|||+|+++||.+|++. +.+||+||+++..
T Consensus         2 ~C~Ic~~~-~~--~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKV-PR--RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSC-CS--SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred             CCccCCch-HH--hcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCH
Confidence            59999995 44  35555579999999999999985 5789999998763

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=3.8e-09  Score=78.84  Aligned_cols=50  Identities=16%  Similarity=0.472  Sum_probs=41.5

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD  257 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d  257 (318)
                      ..+..||||++. +.   ++++++|||+|++.||.+|+......||+|+.++..
T Consensus         6 P~~l~CpIc~~~-m~---dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCch-hh---CceEccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            456789999995 44   345789999999999999998666789999999863

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.1e-09  Score=78.06  Aligned_cols=42  Identities=31%  Similarity=0.634  Sum_probs=35.0

Q ss_pred             CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ..||||++. +.   +++++||||+||..|+++|    +.+||+||..+.
T Consensus         7 l~C~IC~~~-~~---~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~   48 (56)
T d1bora_           7 LRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP   48 (56)
T ss_dssp             SSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred             CCCcccCcc-cC---CCEEecCCCHHhHHHHHcC----CCcCcCCCCccc
Confidence            589999985 43   3568899999999999765    467999999886

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.9e-09  Score=81.33  Aligned_cols=45  Identities=22%  Similarity=0.594  Sum_probs=36.3

Q ss_pred             CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      ...||||++. |.  +++...+|||+||..|+.+|+.   .+||+||..+.
T Consensus        22 ~l~C~IC~~~-~~--~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~   66 (97)
T d1jm7b_          22 LLRCSRCTNI-LR--EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW   66 (97)
T ss_dssp             TTSCSSSCSC-CS--SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred             cCCCccCCch-hh--cCceeCCCCCchhHHHHHHHHh---ccccccCCcCc
Confidence            4589999995 44  2455568999999999999985   46999998775

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.63  E-value=5.5e-09  Score=74.58  Aligned_cols=51  Identities=25%  Similarity=0.436  Sum_probs=37.9

Q ss_pred             CCCCCCCCcccccccccCCceeEEcCC-----CCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021060          202 EGAMHHDCPVCCEYLFETRQDVIVLPC-----GHTIHKNCLKEMREH-HQYACPICSKSVC  256 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~~~v~~LpC-----GH~fH~~Cl~~wl~~-~~~~CPiCrks~~  256 (318)
                      |......|+||++.+ +.   ..+.||     +|.||..||.+|++. .+.+||+||..+.
T Consensus         2 eded~~~C~IC~~~~-~~---~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           2 EDEDVPVCWICNEEL-GN---ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEEC-SC---CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCccCCccC-CC---ceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            445567899999863 32   223444     599999999999864 4578999999874

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4e-07  Score=69.44  Aligned_cols=48  Identities=21%  Similarity=0.413  Sum_probs=36.0

Q ss_pred             CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-------CCCCCCCCC
Q 021060          204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPICS  252 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCr  252 (318)
                      +....||||++++ ...+.+..++|||.||..|+.+|++.       ...+||.|+
T Consensus         3 ~~~~~C~IC~~~~-~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           3 SGSSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CSBCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCCcCccCCCcc-cCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            3457899999964 43445566799999999999999853       124699865

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.6e-06  Score=67.39  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=40.8

Q ss_pred             CCCCCCCCcccccccccCCceeEEcCCC-CccchHHHHHHHhcCCCCCCCCCcccC
Q 021060          202 EGAMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC  256 (318)
Q Consensus       202 e~~~~~~CpIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~  256 (318)
                      +-..+..||||++ ++.   +++++||| |+|.+.||.+||.. +.+||+|+.++.
T Consensus        18 ~~P~~f~CPI~~~-lm~---dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~   68 (98)
T d1wgma_          18 DACDEFLDPIMST-LMC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT   68 (98)
T ss_dssp             SCCTTTBCTTTCS-BCS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred             CCcHHhCCcCchh-HHH---HHHhcccccchhhHHHHHHHHHh-cCCccccccccc
Confidence            3455789999999 454   46788876 58999999999985 578999999986

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.022  Score=41.56  Aligned_cols=67  Identities=22%  Similarity=0.452  Sum_probs=48.1

Q ss_pred             CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcce
Q 021060          205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW  284 (318)
Q Consensus       205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~  284 (318)
                      |+..||.|...|-...        ||+.+..|-..+..  .-.||-|+.++..+.                   +-..++
T Consensus         1 m~~~CP~C~~eL~~~~--------~~~~C~~C~~~~~~--~a~CPdC~~~Le~Lk-------------------ACGAvd   51 (71)
T d2jnea1           1 MELHCPQCQHVLDQDN--------GHARCRSCGEFIEM--KALCPDCHQPLQVLK-------------------ACGAVD   51 (71)
T ss_dssp             CCCBCSSSCSBEEEET--------TEEEETTTCCEEEE--EEECTTTCSBCEEEE-------------------ETTEEE
T ss_pred             CCCcCCCccCcccccC--------CCEehhhhhhhhee--EEeCCccccHHHHHH-------------------hccchh
Confidence            4678999987543211        67777788777754  257999999887543                   234589


Q ss_pred             EEcCCCCC---Ccccccee
Q 021060          285 ILCNDCGK---TSNVQFHV  300 (318)
Q Consensus       285 IlCnDC~~---~s~v~~H~  300 (318)
                      ..|+.|++   ++.|.|++
T Consensus        52 YFC~~cn~LiSKkrv~f~~   70 (71)
T d2jnea1          52 YFCQHGHGLISKKRVEFVL   70 (71)
T ss_dssp             EEETTTTEEECTTTSEEEE
T ss_pred             hhhccCCceeEeeeEEEEe
Confidence            99999994   77888874

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=88.97  E-value=0.084  Score=38.39  Aligned_cols=35  Identities=23%  Similarity=0.665  Sum_probs=25.8

Q ss_pred             eeecCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021060          121 QVICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF  155 (318)
Q Consensus       121 ~v~C~~C~~eQ~v~~~C~~Cg~~f--------~~YfC~~Ckl~  155 (318)
                      ..-|..|...-.....||.|+.++        +.|||..|+=.
T Consensus        18 ~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~cn~L   60 (71)
T d2jnea1          18 HARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL   60 (71)
T ss_dssp             EEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred             CEehhhhhhhheeEEeCCccccHHHHHHhccchhhhhccCCce
Confidence            666777776666666777777766        78999999754

>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.56  E-value=0.26  Score=34.23  Aligned_cols=30  Identities=30%  Similarity=0.810  Sum_probs=20.5

Q ss_pred             EecCccccccCCCCCCeeecCCCCceeecC
Q 021060          147 YFCESCKLFDDDTSKKQYHCDGCGICRIGG  176 (318)
Q Consensus       147 YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~  176 (318)
                      |-|+.|.+=--...++-|||+.||+|---.
T Consensus        18 yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~   47 (56)
T d2dkta2          18 YHCESCGICRIGPKEDFFHCLKCNLCLTTN   47 (56)
T ss_dssp             EEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred             ccCCCCCceeecCCccccccCccccccCcc
Confidence            555555544333467999999999997543

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.71  E-value=0.16  Score=35.07  Aligned_cols=52  Identities=27%  Similarity=0.511  Sum_probs=33.5

Q ss_pred             CCCCCCcccccccccCCceeE-EcCCCCccchHHHHHHHh----cCCCCCCCCCcccC
Q 021060          204 AMHHDCPVCCEYLFETRQDVI-VLPCGHTIHKNCLKEMRE----HHQYACPICSKSVC  256 (318)
Q Consensus       204 ~~~~~CpIClE~lf~s~~~v~-~LpCGH~fH~~Cl~~wl~----~~~~~CPiCrks~~  256 (318)
                      .....|+||.+. .+.....+ =-.|+..||..|+..-..    ...|.||.|+....
T Consensus         4 ~~~~~C~~C~~~-~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~   60 (64)
T d1we9a_           4 GSSGQCGACGES-YAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             SSCCCCSSSCCC-CCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCCcCcCcCCC-CCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCC
Confidence            456789999874 33222212 236899999999964211    24688999986543

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.36  E-value=0.4  Score=31.41  Aligned_cols=44  Identities=25%  Similarity=0.696  Sum_probs=28.6

Q ss_pred             CCcccccccccCCceeEEc--CCCCccchHHHHHHHhc---CCCCCCCCCcc
Q 021060          208 DCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKS  254 (318)
Q Consensus       208 ~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---~~~~CPiCrks  254 (318)
                      .|.||...  .+.. .+++  .|...||..|++.-+..   +...||.|+..
T Consensus         2 ~C~vC~~~--~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKK--GEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCS--SCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCcCcCCC--CCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcCc
Confidence            47778652  2122 2222  68899999999986542   35679999853