Citrus Sinensis ID: 021093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHccEEEEccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEEEEcccccEEEEccccccccccccccEEEEEccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccHHHHHHHHHHHHcccccccccccccccccccccHHHccccccEEEccccccccccccHHHEHHccccccccccccccccccEcccccccccccccccHHHHcccccHHccccccHHccccccccccccccccEEEEHHHHHHHHccccccccHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccccEEEEEEccccccHHccccccc
Coil and Loop (DISEMBL)
mlgvlcarhkpwilnSISLLahgsfaahhqnrfvyspihvqsperrrhhstacrlgvgggglsvgggaasiwhailpsdgcsgcrrrrngrrkpgegswnaasderparwLHRADSAWLLFGVCsclapieywtdsndsnpetvtFYEEKiskidgggggddlnvkrceiinerpfkvtadGRCLFRAIAHGaclrsgeevpdeeRQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIqqpyvwggepelLMASHVLKKPIAVFMVVQSSgnlvnianygeeyqkdkespinvlfhgyghydiletfseqk
Flexible Loop (DISEMBL)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAilpsdgcsgcRRRRNgrrkpgegswnaasderparWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKIskidgggggddlNVKRCEIInerpfkvtadgRCLFRAIAHGaclrsgeevpdEERQRELADELRAQVVDELLkrrketewfiegdfdtyVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Low Complexity Region (SEG)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRlgvgggglsvgggaasIWHAILPSDgcsgcrrrrngrrkpgegSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIdgggggddLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Disordered region (IsUnstruct)
**GVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQ*******HSTACRLGVGGGGLSVGGGAASIWHAILPSDGCS*************************ARWLHRADSAWLLFGVCSCLAPIEYWTD*******************************RCEIINERPFKVTADGRCLFRAIAHGACLR*******************AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET*****
Disordered Region (DISOPRED)
*LGVL*ARHKPWILNSISLLAHGSF***************************************************************************************RADSAWLLFGV********************************************CEIINERPFKVTADGRCLFRAIAHGACLRSGEE***EERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANY****QKDKESPINVLFHGYGHYDILETFS***
Disordered Region (DISEMBL)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQ*********TACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRR********************PARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRS************LADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Disordered Region (DISPRO)
*LGVLCARHKPWILNSISLLAHGSFA*H****FVYSPIHVQSPE***HHSTACRLGVGGGGLSVGGGAASIWHAILPSD**************************RPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	yes	no	0.413	0.413	0.639	4e-48
B2RRE7	1107	OTU domain-containing pro	yes	no	0.359	0.102	0.278	2e-07
Q01804	1113	OTU domain-containing pro	yes	no	0.359	0.102	0.278	3e-07
Q6GM06	294	OTU domain-containing pro	N/A	no	0.410	0.442	0.283	4e-07
P38747	307	OTU domain-containing pro	yes	no	0.429	0.442	0.293	3e-06
Q7ZV00	293	OTU domain-containing pro	no	no	0.413	0.447	0.284	2e-05
Q5M8L0	294	OTU domain-containing pro	no	no	0.441	0.476	0.288	3e-05
Q7RTX8	443	Putative HIN1-like protei	yes	no	0.359	0.257	0.263	0.0001
Q6IE21	290	OTU domain-containing pro	no	no	0.413	0.451	0.291	0.0002
Q7L8S5	288	OTU domain-containing pro	yes	no	0.416	0.458	0.302	0.0003

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 107/133 (80%), Gaps = 2/133 (1%)

Query: 178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
           +  DGRCLFR++AHG CLRSG+  P E+ QRELADELR +V DE ++RR+ETEWF+EGDF
Sbjct: 173 IPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDF 232

Query: 238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
           DTYV++I+ P+VWGGEPEL MASHVL+ PI V+M    +G L++IA YG+EY KD   PI
Sbjct: 233 DTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKD--DPI 290

Query: 298 NVLFHGYGHYDIL 310
            VL+HG+GHYD L
Sbjct: 291 RVLYHGFGHYDAL 303

Arabidopsis thaliana (taxid: 3702)

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
           V  DG CLFRA+A          V           E+R   +  L + R++ E FIEG F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIRYLRENREKFEAFIEGSF 87

Query: 238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
           + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct: 88  EEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVSPSHVTENNFPEK--------V 139

Query: 298 NVLFHGYGHYDIL 310
            + F    HYDI+
Sbjct: 140 LLCFSNGNHYDIV 152

Mus musculus (taxid: 10090)

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
           V  DG CLFRA+A          V           E+R   +  L + R++ E FIEG F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIHYLRENREKFEAFIEGSF 87

Query: 238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
           + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct: 88  EEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEK--------V 139

Query: 298 NVLFHGYGHYDIL 310
            + F    HYDI+
Sbjct: 140 LLCFSNGNHYDIV 152

Homo sapiens (taxid: 9606)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 36/166 (21%)

Query: 166 KRCEIINERPFKVT---ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 222
           K  +I+ ER  ++    +DG C++RAI H           +E+        LR+Q  D +
Sbjct: 140 KLAQILAERELQIRQIPSDGHCMYRAIEHQL---------NEQGNSLTVANLRSQTADYM 190

Query: 223 LKRRKET----------EWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMV 272
            KR ++           + + + +F  Y  +I     WGG+ EL   SH+LK PI    V
Sbjct: 191 QKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIE---V 247

Query: 273 VQSSGNLVNIANYGEEYQKDKESPINVLF--HGYG---HYDILETF 313
           +Q+    + I   GEEY      PI +++  H YG   HY+ +E  
Sbjct: 248 IQAESLPIVI---GEEYSN---KPITLVYMRHAYGLGEHYNSVEQL 287

Xenopus laevis (taxid: 8355)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 14/150 (9%)

Query: 168 CEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEE----RQRELADELRAQVVDELL 223
           CE+   + F +  DG CLF +I     LR   +  D++    + R L+     +  D+ +
Sbjct: 162 CELKKLKQFDIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFI 221

Query: 224 KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIA 283
               + E     D D Y KE++    WGGE E+L  SHV   PI++ M    SG  + + 
Sbjct: 222 PYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM----SGRPIQVY 277

Query: 284 NYGEEYQKDKESPINVLFHGYG---HYDIL 310
           N   E  K+ E  +    H Y    HY+ L
Sbjct: 278 N---ECGKNPELKLVYYKHSYALGEHYNSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL--LKRRKETEWFIE 234
           ++++DG C++RA+ H    R G  +  +E + + A  +R+   D +  L      + +  
Sbjct: 151 EISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTA 209

Query: 235 GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKE 294
            +F+ Y  ++     WGG+ EL   S VL+ PI    V+Q+    + I   GEEY K K 
Sbjct: 210 EEFEKYCSDVADTAAWGGQLELKALSQVLQLPIE---VIQADSPCITI---GEEYDKPKI 263

Query: 295 SPINVLFHGYG---HYDILETFSE 315
           + I  + H YG   HY+ +E   +
Sbjct: 264 TLI-YMRHAYGLGEHYNSVEPLKD 286

Danio rerio (taxid: 7955)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 166 KRCEIINERPFKVT---ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 222
           K   I+ ER  ++    +DG C++RAI H    R G ++     + + AD ++    D L
Sbjct: 140 KLARILAERELQIRQIPSDGHCMYRAIEHQLRER-GNDLTVANLRSQTADYMQNHAEDFL 198

Query: 223 --LKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLV 280
             L      + + + +F  Y  +I     WGG+ EL   SH+LK  I    V+Q+  + +
Sbjct: 199 PFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIE---VIQAESSPI 255

Query: 281 NIANYGEEYQKDKESPINVLFHGYG---HYDILETF 313
            I   GEEY   K   +  + H YG   HY+ +E  
Sbjct: 256 VI---GEEY-SSKAITLVYMRHAYGLGEHYNSVELL 287

Xenopus tropicalis (taxid: 8364)

>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
           V  DG CLFRA+A          V           E+R   +  L + R++ E  I G F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIHCLRENREKFEAIIGGSF 87

Query: 238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
           + Y+K ++ P  W G+ E+   S + +K     +    S + V   N+ E+        +
Sbjct: 88  EGYLKRLENPQEWVGQMEISALSLMYRKDFITNLEPNVSPSQVTENNFPEK--------V 139

Query: 298 NVLFHGYGHYDIL 310
            + F    HYDI+
Sbjct: 140 LLCFSNGNHYDIV 152

Homo sapiens (taxid: 9606)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 30/161 (18%)

Query: 148 EEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQ 207
           EEK++ I    G  +L +K           + ADG C++RAI           V  E  +
Sbjct: 130 EEKVAAI---LGAKNLEMK----------TIPADGHCMYRAIQDQLVF----SVTIESLR 172

Query: 208 RELADELRAQVVDELLKRRKETE---WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLK 264
              A  +R  + D+ L    E E   ++   DF  Y  +I     WGG+ EL   SHVL+
Sbjct: 173 YRTAYYMRKHI-DDFLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQ 231

Query: 265 KPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYG 305
            PI    VVQ++   + I   GEEY +    P+ +++  Y 
Sbjct: 232 TPIE---VVQANSPTIVI---GEEYTR---KPVTLVYLHYA 263

Mus musculus (taxid: 10090)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 30/162 (18%)

Query: 148 EEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQ 207
           EEK++ I G  G   L +K           + ADG C++RAI          E+      
Sbjct: 129 EEKLAAILGARG---LEMK----------AIPADGHCMYRAIQDQLVFSVSVEM-----L 170

Query: 208 RELADELRAQVVDELL---KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLK 264
           R        + VDE L      + ++ F   DF  Y   I +   WGG+ EL   SHVLK
Sbjct: 171 RCRTASYMKKHVDEFLPFFSNPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLK 230

Query: 265 KPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGH 306
            PI    V+Q+    + I   GEEY K    PI +++  Y +
Sbjct: 231 TPIE---VIQADSPTLII---GEEYVK---KPIILVYLRYAY 263

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
449449405	313	PREDICTED: OTU domain-containing protein	0.943	0.955	0.622	1e-101
296090402	317	unnamed protein product [Vitis vinifera]	0.936	0.936	0.626	2e-98
224113207	318	predicted protein [Populus trichocarpa]	0.949	0.946	0.625	1e-92
359486932	380	PREDICTED: uncharacterized protein LOC10	0.801	0.668	0.661	7e-92
356535547	296	PREDICTED: uncharacterized protein LOC10	0.921	0.986	0.593	2e-86
224097684	326	predicted protein [Populus trichocarpa]	0.962	0.935	0.609	3e-86
356576317	294	PREDICTED: OTU domain-containing protein	0.908	0.979	0.592	3e-85
84468350	326	hypothetical protein [Trifolium pratense	0.949	0.923	0.536	1e-80
255580118	185	cysteine-type peptidase, putative [Ricin	0.425	0.729	0.866	4e-63
148907480	411	unknown [Picea sitchensis]	0.883	0.681	0.402	4e-61

>gi|449449405|ref|XP_004142455.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi|449520841|ref|XP_004167441.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/323 (62%), Positives = 232/323 (71%), Gaps = 24/323 (7%)

Query: 1   MLGVLCARHKPWILNSISLLAHGSFAAHHQNR----FVYSPIHVQSPERRRHHSTACRLG 56
           MLGVLCAR KPWIL S+S   HGS   HH +      V SPI  Q   R+RHHS+AC+L 
Sbjct: 1   MLGVLCARPKPWILVSLSNFIHGSAVYHHHHHQSRLLVQSPI--QFDRRQRHHSSACKLA 58

Query: 57  VGGGGLSVGGGAASIWHAILPSDGCSG---CRRRRNGRRKPGEGSWNAASDERPARWLHR 113
                   GGGAASIWHAI+PS   S    CR   +   + GEGSWN A D RPARWLHR
Sbjct: 59  --------GGGAASIWHAIMPSGAGSSSNLCRPAIHCHERKGEGSWNVAWDARPARWLHR 110

Query: 114 ADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINE 173
            DSAWLLFGVC+C+AP++ W D++    E V+  ++K         G + N       + 
Sbjct: 111 PDSAWLLFGVCACIAPLD-WVDASH---EAVSLDQKKEV---CESSGPEFNQNDESSADY 163

Query: 174 RPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFI 233
           R   V ADGRCLFRAIAHGACLRSGEE PD++RQRELADELRA+VVDELLKRRKETEW+I
Sbjct: 164 RVTGVLADGRCLFRAIAHGACLRSGEEAPDDDRQRELADELRAKVVDELLKRRKETEWYI 223

Query: 234 EGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDK 293
           EGDFD YVK IQQP+VWGGEPELLMASHVLK PI+VFM  +SS  L+NIA YG+EYQK +
Sbjct: 224 EGDFDAYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRERSSDGLINIAKYGQEYQKGE 283

Query: 294 ESPINVLFHGYGHYDILETFSEQ 316
           ESPINVLFHGYGHYDILET S++
Sbjct: 284 ESPINVLFHGYGHYDILETSSDK 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090402|emb|CBI40221.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/329 (62%), Positives = 232/329 (70%), Gaps = 32/329 (9%)

Query: 1   MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVY----SPIHVQ---SPERRRHHSTAC 53
           MLGVLCARHKPWIL ++S + HGS   HH +   +    +PI         RRRHHS AC
Sbjct: 1   MLGVLCARHKPWILATLSFV-HGSATHHHLHLNHHHLLGTPIQFNGGGDDHRRRHHSRAC 59

Query: 54  RLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRR------KPGEGSWNAASDERP 107
           R G      S GGGAASIWHAILPS G      RR+  R      + GEGSWN A D RP
Sbjct: 60  RQG------SSGGGAASIWHAILPSGG-----DRRSSLRPALLHDQKGEGSWNVAWDARP 108

Query: 108 ARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKR 167
           ARWLHR DSAWLLFGVC+CLAP+    DS D + E V   ++KI   +      D N   
Sbjct: 109 ARWLHRPDSAWLLFGVCACLAPL----DSFDVDNEVVAV-DDKIEGCNQVNEISDENNNS 163

Query: 168 CEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRK 227
               + R   V ADGRCLFRAIAH ACLRSGEE PDE RQ ELAD+LRAQVVDELLKRR+
Sbjct: 164 SA--DYRVTGVPADGRCLFRAIAHSACLRSGEEAPDENRQTELADDLRAQVVDELLKRRE 221

Query: 228 ETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGE 287
           ETEWFIEG+FD YVK IQQPYVWGGEPEL+MASHVLK PI+VFM+ +SSG+L NIANYG+
Sbjct: 222 ETEWFIEGNFDAYVKRIQQPYVWGGEPELIMASHVLKMPISVFMIGRSSGDLKNIANYGK 281

Query: 288 EYQKDKESPINVLFHGYGHYDILETFSEQ 316
           EY+ D ESPINVLFHGYGHYDILETFS+ 
Sbjct: 282 EYRIDNESPINVLFHGYGHYDILETFSDH 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113207|ref|XP_002316423.1| predicted protein [Populus trichocarpa] gi|222865463|gb|EEF02594.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 204/326 (62%), Positives = 228/326 (69%), Gaps = 25/326 (7%)

Query: 1   MLGVLCARHKP-WILNSISLLAHGSFAAHHQNRFVYSPIHVQ--SPERRRHHSTACRLGV 57
           MLGVLCAR KP WILNS+    H +   HH +    S +H+   S   RRHHS  C    
Sbjct: 1   MLGVLCARPKPNWILNSLFTHFHLNHHHHHNSNNRLS-LHLSGSSTAARRHHSNLCSADS 59

Query: 58  GGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSA 117
           G GG      AA+IWH I P+D     RRR   R   GEGSWNAA D RPARWLHR DSA
Sbjct: 60  GCGG------AAAIWHVIQPAD----WRRRTERRSVRGEGSWNAAWDGRPARWLHRPDSA 109

Query: 118 WLLFGVCSCLAP-IEYWTDSNDSNPETVTFYEEKISKIDGG---GGGDDLNVKRCEIINE 173
           WLLFGVC+CLAP IE+ +D N  N + V   E++  +IDGG      DD      +    
Sbjct: 110 WLLFGVCACLAPAIEFLSDVN--NIDDVDHQEKE--RIDGGDLNASSDDAKQDNSDATVG 165

Query: 174 RPFKVT---ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE 230
             +KVT   ADGRCLFRAIAH ACLR+GEE PDE RQRELADELRAQVVDELLKRR+ETE
Sbjct: 166 SDYKVTGVLADGRCLFRAIAHMACLRNGEEAPDENRQRELADELRAQVVDELLKRREETE 225

Query: 231 WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQ 290
           WFIEGDFD YVK IQQPYVWGGEPELLMASHVLK  I+VFM  +++GNLVNI NYGEEYQ
Sbjct: 226 WFIEGDFDAYVKRIQQPYVWGGEPELLMASHVLKTMISVFMRDRTTGNLVNIVNYGEEYQ 285

Query: 291 KDKESPINVLFHGYGHYDILETFSEQ 316
           KD+ +PINVLFHGYGHYDILET   Q
Sbjct: 286 KDEVNPINVLFHGYGHYDILETTPGQ 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486932|ref|XP_002267087.2| PREDICTED: uncharacterized protein LOC100245448 [Vitis vinifera]

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/278 (66%), Positives = 204/278 (73%), Gaps = 24/278 (8%)

Query: 45  RRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRR------KPGEGS 98
           RRRHHS ACR G      S GGGAASIWHAILPS G      RR+  R      + GEGS
Sbjct: 114 RRRHHSRACRQG------SSGGGAASIWHAILPSGG-----DRRSSLRPALLHDQKGEGS 162

Query: 99  WNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGG 158
           WN A D RPARWLHR DSAWLLFGVC+CLAP+    DS D + E V   ++KI   +   
Sbjct: 163 WNVAWDARPARWLHRPDSAWLLFGVCACLAPL----DSFDVDNEVVAV-DDKIEGCNQVN 217

Query: 159 GGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQV 218
              D N       + R   V ADGRCLFRAIAH ACLRSGEE PDE RQ ELAD+LRAQV
Sbjct: 218 EISDENNNSSA--DYRVTGVPADGRCLFRAIAHSACLRSGEEAPDENRQTELADDLRAQV 275

Query: 219 VDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGN 278
           VDELLKRR+ETEWFIEG+FD YVK IQQPYVWGGEPEL+MASHVLK PI+VFM+ +SSG+
Sbjct: 276 VDELLKRREETEWFIEGNFDAYVKRIQQPYVWGGEPELIMASHVLKMPISVFMIGRSSGD 335

Query: 279 LVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ 316
           L NIANYG+EY+ D ESPINVLFHGYGHYDILETFS+ 
Sbjct: 336 LKNIANYGKEYRIDNESPINVLFHGYGHYDILETFSDH 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535547|ref|XP_003536306.1| PREDICTED: uncharacterized protein LOC100793001 [Glycine max]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/315 (59%), Positives = 213/315 (67%), Gaps = 23/315 (7%)

Query: 1   MLGVLCA-RHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCA R KPW+L+ + +  H S                 SP  RR HSTAC+L + G
Sbjct: 1   MLGVLCATRPKPWLLSLVHV--HASLP----RLPHSPLSPSASPPPRRRHSTACKLFLSG 54

Query: 60  GGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRK-PGEGSWNAASDERPARWLHRADSAW 118
           G       AASIWHAI+P  G  G RR         GEGSWN A D RPARWLHR DSAW
Sbjct: 55  GA------AASIWHAIMPR-GDDGLRRGVVAVHDLKGEGSWNVAWDARPARWLHRPDSAW 107

Query: 119 LLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKV 178
           LLFGVC+CLAP     D+ D+N   +   +E    +D     D+++       + R   V
Sbjct: 108 LLFGVCACLAPPPGCVDA-DTNSAGIAV-DESCGLLDKEREEDEVSA------DYRVTGV 159

Query: 179 TADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFD 238
            ADGRCLFRAIAHGACLR+GE+ PDE RQRELADELRA+VVDELLKRR+ETEWFIEGDFD
Sbjct: 160 PADGRCLFRAIAHGACLRNGEKAPDENRQRELADELRAKVVDELLKRREETEWFIEGDFD 219

Query: 239 TYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPIN 298
           TY++ IQQPYVWGGEPELLMASHVLK PI+VFM    S  LVNIA YGEEY+ DK+  IN
Sbjct: 220 TYLQRIQQPYVWGGEPELLMASHVLKTPISVFMRDTGSVELVNIAKYGEEYRNDKDISIN 279

Query: 299 VLFHGYGHYDILETF 313
           VLFHGYGHYDILET 
Sbjct: 280 VLFHGYGHYDILETL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097684|ref|XP_002311041.1| predicted protein [Populus trichocarpa] gi|222850861|gb|EEE88408.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/330 (60%), Positives = 224/330 (67%), Gaps = 25/330 (7%)

Query: 1   MLGVLCARHKP-WILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCAR KP WILNS+    H     H  N  +   +       RRHHS+ C      
Sbjct: 1   MLGVLCARPKPNWILNSLFTHFHHQHHHHQSNDRLSLHLPHSFTAARRHHSSFC------ 54

Query: 60  GGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWL 119
                GGGAA+IWH + P+D     RRRR  R   GEGSWN A D RPARWLHR DSAWL
Sbjct: 55  SADCGGGGAAAIWHVVQPADW----RRRRGRRSVRGEGSWNVAWDGRPARWLHRPDSAWL 110

Query: 120 LFGVCSCLAP-IEYWTDSNDSNPETVTF---YEEKISKIDGGG------GGDDLNVKRCE 169
           LFGVC+CLAP IE + D N    E V     ++EK  +IDGG         DD+      
Sbjct: 111 LFGVCACLAPAIELFCDVNIEGGENVVVDVDHQEK-ERIDGGDLNASAVNSDDVKQDSSS 169

Query: 170 IINERPFKVT---ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRR 226
                 +KVT   ADGRCLFRAIAH ACLR+GEE PDE RQRELADELRAQVVDELLKRR
Sbjct: 170 STAGSDYKVTGVLADGRCLFRAIAHMACLRNGEEAPDENRQRELADELRAQVVDELLKRR 229

Query: 227 KETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG 286
           +ETEWFIEGDFD YVK IQQPYVWGGEPELLMASHVLK  I+VFM  +++GNLVNIANYG
Sbjct: 230 EETEWFIEGDFDAYVKRIQQPYVWGGEPELLMASHVLKTMISVFMRDRTTGNLVNIANYG 289

Query: 287 EEYQKDKESPINVLFHGYGHYDILETFSEQ 316
           EEY+KD+ +PINVLFHGYGHYDILET   Q
Sbjct: 290 EEYRKDEVNPINVLFHGYGHYDILETTPGQ 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576317|ref|XP_003556279.1| PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/319 (59%), Positives = 214/319 (67%), Gaps = 31/319 (9%)

Query: 1   MLGVLCA-RHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCA R KPW+ +    L H S           S     SP  RR HSTAC+L +  
Sbjct: 1   MLGVLCATRSKPWLFS----LVHASLPRLSHAPLSPS----ASPPPRRRHSTACKLFLSA 52

Query: 60  GGLSVGGGAASIWHAILPS-DGCSGCRRRRNG-RRKPGEGSWNAASDERPARWLHRADSA 117
           GG      AASIWHAI+P  +   G RR         GEGSWN A D RPARWLHR DSA
Sbjct: 53  GG------AASIWHAIMPRVNDDDGFRRGVVAFHDMKGEGSWNVAWDARPARWLHRPDSA 106

Query: 118 WLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFK 177
           WLLFGVC+CLAP     D+ D+N + +   +E    +D          +R E      ++
Sbjct: 107 WLLFGVCACLAPPSSCVDA-DTNTDAIAV-DESCRLLDK---------EREEYEVSADYR 155

Query: 178 VT---ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE 234
           VT   ADGRCLFRAIAHGACLR+GE+ PDE RQRELADELRA+VVDEL+KRR+ETEWFIE
Sbjct: 156 VTGVPADGRCLFRAIAHGACLRNGEKAPDENRQRELADELRAKVVDELMKRREETEWFIE 215

Query: 235 GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKE 294
           GDFDTYV+ IQQPYVWGGEPELLMASHVLK PI+VFM    S +LVNIA YGEEY+ DKE
Sbjct: 216 GDFDTYVQRIQQPYVWGGEPELLMASHVLKTPISVFMRDTGSVDLVNIAKYGEEYRNDKE 275

Query: 295 SPINVLFHGYGHYDILETF 313
             INVLFHGYGHYDILET 
Sbjct: 276 ISINVLFHGYGHYDILETL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468350|dbj|BAE71258.1| hypothetical protein [Trifolium pratense]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/330 (53%), Positives = 214/330 (64%), Gaps = 29/330 (8%)

Query: 1   MLGVLCA-RHKPWILNSI----------SLLAHGSFAAHHQNRFVYSPIHVQSPERRRHH 49
           MLGVLCA R +PWI + +          + LAH + A+        SP    +   RR+H
Sbjct: 1   MLGVLCATRSRPWIFSFLHHSSSHHHHTARLAHITVASSSS----LSPTFFSA---RRNH 53

Query: 50  STACRLGVGGGGLSVGGGAASIWHAILPSDG---CSGCRRRRNGRRKPGEGSWNAASDER 106
           S+ C+L +     S GGGAASIWHAI+P  G     G     +     GEGSWN A D R
Sbjct: 54  SSQCKLQI-----SAGGGAASIWHAIMPCGGDGFQRGAFMVHHDHELKGEGSWNVAWDAR 108

Query: 107 PARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNP-ETVTFYEEKISKIDGGGGGDDLNV 165
           PARWLHR+DSAWLLFGV + LAP     D +   P  T     ++IS+ +G    D  + 
Sbjct: 109 PARWLHRSDSAWLLFGVRAWLAPPPVIVDVDPEVPLPTSVISPDEISRSEGLEIKDAESD 168

Query: 166 KRCEIINE--RPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELL 223
           K  + ++   R   V ADGRCLFRA+AHGACL++GEE P+E RQRELADELRA+V +ELL
Sbjct: 169 KPNDELSSDYRVTGVLADGRCLFRALAHGACLKNGEEAPNENRQRELADELRAKVAEELL 228

Query: 224 KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIA 283
           KRRKETEWFIEGDFDTYV  IQQ +VWGGEPELLMASHVLK PI VFM   +S +LVNIA
Sbjct: 229 KRRKETEWFIEGDFDTYVTRIQQSFVWGGEPELLMASHVLKTPIFVFMRDPNSIDLVNIA 288

Query: 284 NYGEEYQKDKESPINVLFHGYGHYDILETF 313
            YGEEY  D+   INVLFH +GHY++LET 
Sbjct: 289 KYGEEYMNDEGISINVLFHRHGHYELLETL 318

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580118|ref|XP_002530891.1| cysteine-type peptidase, putative [Ricinus communis] gi|223529544|gb|EEF31497.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/135 (86%), Positives = 125/135 (92%)

Query: 178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
           V ADGRCLFRAIAHGACLRSGEE PDE RQR LADELRAQVVDELLKRR+ETEWFIEGDF
Sbjct: 41  VLADGRCLFRAIAHGACLRSGEEAPDENRQRVLADELRAQVVDELLKRREETEWFIEGDF 100

Query: 238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
           D YVK IQQPYVWGGEPELLMASHVLK  I+VFM+ ++SGNLVNIANYGEEY+KD+ +PI
Sbjct: 101 DAYVKRIQQPYVWGGEPELLMASHVLKTMISVFMIDRASGNLVNIANYGEEYRKDEVNPI 160

Query: 298 NVLFHGYGHYDILET 312
           NVLFHGYGHYDILET
Sbjct: 161 NVLFHGYGHYDILET 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907480|gb|ABR16871.1| unknown [Picea sitchensis]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/333 (40%), Positives = 185/333 (55%), Gaps = 53/333 (15%)

Query: 30  QNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDG--------- 80
           Q+  + +  H+ + +R +HHS++C L        +G   A+IWHA++PS           
Sbjct: 85  QHNSIETCCHLSNAKRAQHHSSSCLLAEN----HIGSVGATIWHALIPSSSQFSHTQQVP 140

Query: 81  --------------CSGCRRRRNGRRKPG----------------------EGSWNAASD 104
                         C+  R    G  +                        EGSWNA  D
Sbjct: 141 NVENGKIRAESNSLCNFSRSNSVGFERSSIGIYGKCDSMTCPKLPVVGGFSEGSWNATWD 200

Query: 105 ERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKI--DGGGGGDD 162
            RPARWLH + SAWLLFGVC+C + +       ++        E  ++    D     D 
Sbjct: 201 VRPARWLHGSHSAWLLFGVCACFSSLNPAHSEAETVEVVAGIDENDVNNALDDAIPAADQ 260

Query: 163 LNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 222
            +  +   I+     +  DGRCLFRA+AHGA LRSG+  P+E  QRELADELR +V DEL
Sbjct: 261 ASHGKKVYIDYSVTAIPGDGRCLFRAVAHGASLRSGKPAPNESLQRELADELRTRVADEL 320

Query: 223 LKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNI 282
           LKRR+ETEWFIEGDFD YV++I++P+VWGGEPELLMASHVL+ PI V+M  + +  L+ I
Sbjct: 321 LKRREETEWFIEGDFDKYVEQIKRPHVWGGEPELLMASHVLQMPITVYMRERETDGLIAI 380

Query: 283 ANYGEEYQKDKESPINVLFHGYGHYDILETFSE 315
           A YG++Y K   +PI+VL+HG+GHYD L+  ++
Sbjct: 381 AEYGQDYGKG--NPISVLYHGFGHYDALQIHND 411

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.413	0.413	0.639	4.8e-46
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.419	0.568	0.303	3.1e-13
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.413	0.447	0.284	9.3e-08
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.429	0.442	0.293	5.4e-07
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.397	0.379	0.298	5.6e-06
MGI|MGI:1098801	1107	Otud4 "OTU domain containing 4	0.359	0.102	0.293	5.7e-05
UNIPROTKB|Q01804	1113	OTUD4 "OTU domain-containing p	0.359	0.102	0.293	5.7e-05
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.305	0.103	0.300	0.00048
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.305	0.103	0.300	0.00048
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.394	0.431	0.300	0.00066

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 85/133 (63%), Positives = 107/133 (80%)

Query:   178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
             +  DGRCLFR++AHG CLRSG+  P E+ QRELADELR +V DE ++RR+ETEWF+EGDF
Sbjct:   173 IPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDF 232

Query:   238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
             DTYV++I+ P+VWGGEPEL MASHVL+ PI V+M    +G L++IA YG+EY KD   PI
Sbjct:   233 DTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKD--DPI 290

Query:   298 NVLFHGYGHYDIL 310
              VL+HG+GHYD L
Sbjct:   291 RVLYHGFGHYDAL 303

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 47/155 (30%), Positives = 76/155 (49%)

Query:   177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF---- 232
             +V  DGRCLFRA+  G     G  + + +R+R+ ADELR  V + +    KE E +    
Sbjct:    80 RVKGDGRCLFRALVKGMAFNKGITL-NPQRERDDADELRMAVKEVICNDPKEREKYKEAL 138

Query:   233 ----IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGN-------LVN 281
                 ++     + + I +   WGGE ELL+ S + K+PI V++     G         + 
Sbjct:   139 VAITVDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPIIVYIPEHEHGRGGGYGPGFIP 198

Query:   282 IANYGEEYQ------KDKESPINVLFHGYGHYDIL 310
             I  YG E++      K  ++ + +L+ G  HYD+L
Sbjct:   199 IQEYGSEFRGGWGKGKTNKNVVRLLYSGRNHYDLL 233

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 41/144 (28%), Positives = 71/144 (49%)

Query:   177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL--LKRRKETEWFIE 234
             ++++DG C++RA+ H    R G  +  +E + + A  +R+   D +  L      + +  
Sbjct:   151 EISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTA 209

Query:   235 GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKE 294
              +F+ Y  ++     WGG+ EL   S VL+ PI V   +Q+    + I   GEEY K K 
Sbjct:   210 EEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEV---IQADSPCITI---GEEYDKPKI 263

Query:   295 SPINVLFHGYG---HYDILETFSE 315
             + I  + H YG   HY+ +E   +
Sbjct:   264 TLI-YMRHAYGLGEHYNSVEPLKD 286

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 138 (53.6 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 44/150 (29%), Positives = 67/150 (44%)

Query:   168 CEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEE----RQRELADELRAQVVDELL 223
             CE+   + F +  DG CLF +I     LR   +  D++    + R L+     +  D+ +
Sbjct:   162 CELKKLKQFDIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFI 221

Query:   224 KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIA 283
                 + E     D D Y KE++    WGGE E+L  SHV   PI++ M    SG  + + 
Sbjct:   222 PYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM----SGRPIQVY 277

Query:   284 NYGEEYQKDKESPINVLFHGYG---HYDIL 310
             N   E  K+ E  +    H Y    HY+ L
Sbjct:   278 N---ECGKNPELKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 43/144 (29%), Positives = 69/144 (47%)

Query:   177 KVTADGRCLFRAIAHGACLRSGEEVP-DEERQRELADE-LRAQVVDELLKRRKETEW--- 231
             ++  DG CL+RA+ +    RSG   P   +  RE+A   +R    D L     ETE    
Sbjct:   185 EIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMREHKTDFLPFFLSETEGDSN 244

Query:   232 --FIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEY 289
                 E  F+ Y +E++    WG + EL   +H L+K I V+     SG+  ++   G+EY
Sbjct:   245 SGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVY-----SGSFPDV-EMGKEY 298

Query:   290 QKDKESPINVLFH----GYG-HYD 308
             +   +S + + +H    G G HY+
Sbjct:   299 RSGDDSSLMLSYHRHAFGLGEHYN 322

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

MGI|MGI:1098801 Otud4 "OTU domain containing 4" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 39/133 (29%), Positives = 64/133 (48%)

Query:   178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
             V  DG CLFRA+A        E+V   +  R +  E+R   +  L + R++ E FIEG F
Sbjct:    39 VAKDGSCLFRAVA--------EQVLHSQ-SRHV--EVRMACIRYLRENREKFEAFIEGSF 87

Query:   238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
             + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct:    88 EEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVSPSHVTENNFPEK--------V 139

Query:   298 NVLFHGYGHYDIL 310
              + F    HYDI+
Sbjct:   140 LLCFSNGNHYDIV 152

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q01804 OTUD4 "OTU domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 39/133 (29%), Positives = 64/133 (48%)

Query:   178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 237
             V  DG CLFRA+A        E+V   +  R +  E+R   +  L + R++ E FIEG F
Sbjct:    39 VAKDGSCLFRAVA--------EQVLHSQ-SRHV--EVRMACIHYLRENREKFEAFIEGSF 87

Query:   238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 297
             + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct:    88 EEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEK--------V 139

Query:   298 NVLFHGYGHYDIL 310
              + F    HYDI+
Sbjct:   140 LLCFSNGNHYDIV 152

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query:   178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGD- 236
             +  DG CLFRA+       S +    EE  +E+    R +VV+ LLK  +  + FIE D 
Sbjct:    55 IRTDGNCLFRAV-------SDQLYNHEENYKEI----RKKVVEHLLKNEELYKNFIEYDE 103

Query:   237 -FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEE 288
              + +Y++ I     WGG+ EL     + K  I ++   Q +G ++ I N+ ++
Sbjct:   104 SYKSYIERISLDGTWGGQLELQAVGEIYKVNILIY---QENGCILEIKNHSDD 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
 Identities = 34/113 (30%), Positives = 57/113 (50%)

Query:   178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGD- 236
             +  DG CLFRA+       S +    EE  +E+    R +VV+ LLK  +  + FIE D 
Sbjct:    55 IRTDGNCLFRAV-------SDQLYNHEENYKEI----RKKVVEHLLKNEELYKNFIEYDE 103

Query:   237 -FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEE 288
              + +Y++ I     WGG+ EL     + K  I ++   Q +G ++ I N+ ++
Sbjct:   104 SYKSYIERISLDGTWGGQLELQAVGEIYKVNILIY---QENGCILEIKNHSDD 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 111 (44.1 bits), Expect = 0.00066, P = 0.00066
 Identities = 43/143 (30%), Positives = 65/143 (45%)

Query:   178 VTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE---WFIE 234
             + ADG C++RAI           V  E  +   A  +R  + D+ L    E E   ++  
Sbjct:   147 IPADGHCMYRAIQDQLVF----SVTIESLRYRTAYYMRKHI-DDFLPFFTEPEAGNFYTR 201

Query:   235 GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKE 294
              DF  Y  +I     WGG+ EL   SHVL+ PI V   VQ++   + I   GEEY +   
Sbjct:   202 EDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEV---VQANSPTIVI---GEEYTR--- 252

Query:   295 SPINVLFHGYGHYDILETFSEQK 317
              P+ +++  Y   D  E ++  K
Sbjct:   253 KPVTLVYLHYA-CDFGEHYNSVK 274


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      317       275   0.00079  115 3  11 22  0.48    33
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  244 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  23.96u 0.19s 24.15t   Elapsed:  00:00:01
  Total cpu time:  23.96u 0.19s 24.15t   Elapsed:  00:00:02
  Start:  Sat May 11 01:07:09 2013   End:  Sat May 11 01:07:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	6e-23
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	8e-05

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 91.4 bits (227), Expect = 6e-23
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 179 TADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFD 238
             DG CLF A++                ++EL DELR  VV+ L + R++ E F+E D +
Sbjct: 1   PGDGNCLFHAVSDQLGD---------AGRQELHDELREAVVEYLRENREDFEKFLEEDEN 51

Query: 239 TYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPIN 298
            Y K I +   WGG  E+   +H+L+ PI V+  +Q     V I  YG     +K+  I 
Sbjct: 52  EYYKWISKDGAWGGNIEIFALAHILRVPIIVYK-LQGGRITVYIKIYGTYLPLNKKPVIR 110

Query: 299 VLFHGY----GHY 307
           + + G      HY
Sbjct: 111 LSYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 236 DFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKES 295
            +DTYV E+      G   E+   + +LK P         + +     N           
Sbjct: 235 LWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTN----TASPSIKCN---ICGTGFVG 287

Query: 296 PINVLFHGY--GHYDILE 311
             +   H    GHY+  E
Sbjct: 288 EKDYYAHALATGHYNFGE 305

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.97
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.91
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.71
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.63
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.5
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.39
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.08
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.76

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-30  Score=245.86  Aligned_cols=148  Identities=34%  Similarity=0.585  Sum_probs=125.0

Q ss_pred             hcCCCCCCCchhHHHhhhcCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhh
Q 021093          152 SKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEW  231 (317)
Q Consensus       152 ~~~d~r~~~~~l~~~l~~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~  231 (317)
                      ++.+.|--+++-...++...+|.+++||+||+|||+||+|||..+++..+        ....||..+++||++|.++|.+
T Consensus       138 ~~~~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~--------~v~kLR~~~a~Ymr~H~~df~p  209 (302)
T KOG2606|consen  138 NQADAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLL--------SVQKLREETADYMREHVEDFLP  209 (302)
T ss_pred             cCCchhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCC--------cHHHHHHHHHHHHHHHHHHhhh
Confidence            34444443433334445599999999999999999999999998876544        4789999999999999999999


Q ss_pred             hhc----------ccHHHHHhhhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEE
Q 021093          232 FIE----------GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLF  301 (317)
Q Consensus       232 Fle----------e~feeY~~~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlY  301 (317)
                      |+.          ++|++||++|++++.|||++||.|+|++|++||.||+.+.+      +.+||++|++  .+||+|+|
T Consensus       210 f~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p------~~~~geey~k--d~pL~lvY  281 (302)
T KOG2606|consen  210 FLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGP------ILEYGEEYGK--DKPLILVY  281 (302)
T ss_pred             HhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCC------ceeechhhCC--CCCeeeeh
Confidence            983          25999999999999999999999999999999999999854      5789999986  69999999


Q ss_pred             cCC----C-CcceeeCCCC
Q 021093          302 HGY----G-HYDILETFSE  315 (317)
Q Consensus       302 hg~----g-HYDSLr~i~d  315 (317)
                      |+.    | |||||.+...
T Consensus       282 ~rH~y~LGeHYNS~~~~~n  300 (302)
T KOG2606|consen  282 HRHAYGLGEHYNSVTPLKN  300 (302)
T ss_pred             HHhHHHHHhhhcccccccc
Confidence            985    3 9999988653

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.91  E-value=1.5e-24  Score=177.45  Aligned_cols=113  Identities=38%  Similarity=0.647  Sum_probs=89.1

Q ss_pred             CCCCchhhHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHHHHHHh-hChhhhhhhhcccHHHHHhhhcCCCcccChHHH
Q 021093          179 TADGRCLFRAIAHGACLRS-GEEVPDEERQRELADELRAQVVDELL-KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPEL  256 (317)
Q Consensus       179 pgDGNCLFRAVA~qL~~~~-G~~~~~~~~~q~~h~eLR~~VvdyI~-~n~deFe~Flee~feeY~~~Mrk~g~WGGeiEL  256 (317)
                      ||||||||||||+||+... |.        +..|.+||+++++||+ +|++.|++|++++      +|+++++|||++||
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~--------~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el   66 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGS--------EDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIEL   66 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSS--------TTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHH
Confidence            7999999999999998443 22        2579999999999999 9999999999876      99999999999999


Q ss_pred             HHHHHhcCccEEEEEeccCCCcceeEEecCC-cccCCCCCeEEEEEcC-----CCCc
Q 021093          257 LMASHVLKKPIAVFMVVQSSGNLVNIANYGE-EYQKDKESPINVLFHG-----YGHY  307 (317)
Q Consensus       257 ~ALS~llkv~I~V~~~~~~~~~~~~I~~fGe-e~~~~~~~pI~LlYhg-----~gHY  307 (317)
                      +|+|++|+++|+||+..... ....+ .+.. ..+....++|.++|++     .+||
T Consensus        67 ~a~a~~~~~~I~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   67 QALANVLNRPIIVYSSSDGD-NVVFI-KFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HHHHHHHTSEEEEECETTTB-EEEEE-EESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             HHHHHHhCCeEEEEEcCCCC-cccee-eecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            99999999999999874331 12222 3322 2112236899999998     7898

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=9.9e-18  Score=156.79  Aligned_cols=127  Identities=24%  Similarity=0.309  Sum_probs=107.3

Q ss_pred             cCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhh-hhhhcccHHHHHhhhcCCC
Q 021093          170 IINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQPY  248 (317)
Q Consensus       170 ~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deF-e~Flee~feeY~~~Mrk~g  248 (317)
                      .-.+..+.||.|++|||+||+..+....+..          -.+||+.++..+..|++.| +.+++..-++||..|+|+.
T Consensus       107 ~gvl~~~vvp~DNSCLF~ai~yv~~k~~~~~----------~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~d  176 (307)
T KOG3288|consen  107 EGVLSRRVVPDDNSCLFTAIAYVIFKQVSNR----------PYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMD  176 (307)
T ss_pred             cceeEEEeccCCcchhhhhhhhhhcCccCCC----------cHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccc
Confidence            3456788899999999999999998322221          2689999999999999999 7788889999999999999


Q ss_pred             cccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCC
Q 021093          249 VWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFS  314 (317)
Q Consensus       249 ~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~  314 (317)
                      .|||.|||..||+.|++.|.|++....     .|..||++..-  ...+.|+|.|. |||+|....
T Consensus       177 sWGGaIElsILS~~ygveI~vvDiqt~-----rid~fged~~~--~~rv~llydGI-HYD~l~m~~  234 (307)
T KOG3288|consen  177 SWGGAIELSILSDYYGVEICVVDIQTV-----RIDRFGEDKNF--DNRVLLLYDGI-HYDPLAMNE  234 (307)
T ss_pred             ccCceEEeeeehhhhceeEEEEeccee-----eehhcCCCCCC--CceEEEEeccc-ccChhhhcc
Confidence            999999999999999999999998632     47789987532  67889999886 999987644

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.63  E-value=2.3e-15  Score=138.98  Aligned_cols=101  Identities=24%  Similarity=0.330  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhc----ccHHHHHhh-hcCCCcccChHHHHHHHHhcCccEEEEEeccC-CCcceeEE
Q 021093          210 LADELRAQVVDELLKRRKETEWFIE----GDFDTYVKE-IQQPYVWGGEPELLMASHVLKKPIAVFMVVQS-SGNLVNIA  283 (317)
Q Consensus       210 ~h~eLR~~VvdyI~~n~deFe~Fle----e~feeY~~~-Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~-~~~~~~I~  283 (317)
                      ....+|..++.||+.|.++|++|++    .++++||++ +...+.-.+++.|.|||++|+++|.|+..++. .+......
T Consensus       138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~  217 (244)
T PF10275_consen  138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRH  217 (244)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEE
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccc
Confidence            3558999999999999999999997    579999965 66668899999999999999999999998865 33334444


Q ss_pred             ecCCcccCCCCCeEEEEEcCCCCcceeeC
Q 021093          284 NYGEEYQKDKESPINVLFHGYGHYDILET  312 (317)
Q Consensus       284 ~fGee~~~~~~~pI~LlYhg~gHYDSLr~  312 (317)
                      .|.++. ......|.|+|.. ||||.|++
T Consensus       218 ~~~~~~-~~~~~~i~LLyrp-gHYdIly~  244 (244)
T PF10275_consen  218 EFPPDN-ESQEPQITLLYRP-GHYDILYP  244 (244)
T ss_dssp             EES-SS-TTSS-SEEEEEET-BEEEEEEE
T ss_pred             cCCCcc-CCCCCEEEEEEcC-CccccccC
Confidence            554321 1236789999966 79999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=6.7e-14  Score=129.50  Aligned_cols=98  Identities=24%  Similarity=0.299  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHhhhcCC-CcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecC
Q 021093          210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVKEIQQP-YVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG  286 (317)
Q Consensus       210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~~Mrk~-g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fG  286 (317)
                      ....||..+..+|++|+|+|++||++  +.++||.+-..| .+-.|+++|.|||+.+++.|.|...++..++...-..|-
T Consensus       155 iV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp  234 (256)
T KOG3991|consen  155 IVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP  234 (256)
T ss_pred             HHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc
Confidence            47889999999999999999999976  799999986665 677999999999999999999999887754322222222


Q ss_pred             CcccCCCCCeEEEEEcCCCCcceeeC
Q 021093          287 EEYQKDKESPINVLFHGYGHYDILET  312 (317)
Q Consensus       287 ee~~~~~~~pI~LlYhg~gHYDSLr~  312 (317)
                       +.   ....|.|+|. .||||.|++
T Consensus       235 -e~---s~P~I~LLYr-pGHYdilY~  255 (256)
T KOG3991|consen  235 -EA---SAPEIYLLYR-PGHYDILYK  255 (256)
T ss_pred             -cc---cCceEEEEec-CCccccccC
Confidence             22   1567889985 489999986

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.3e-13  Score=133.98  Aligned_cols=95  Identities=29%  Similarity=0.378  Sum_probs=84.7

Q ss_pred             hcCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcccHHHHHhhhcCCC
Q 021093          169 EIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPY  248 (317)
Q Consensus       169 ~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee~feeY~~~Mrk~g  248 (317)
                      ..+|+..+.|.+||||+|||+++|++.   +        ++.|+.+|+++++++.++++.|+.|+.++|-+|+.++++++
T Consensus       214 ~~~g~e~~Kv~edGsC~fra~aDQvy~---d--------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~  282 (371)
T KOG2605|consen  214 KHFGFEYKKVVEDGSCLFRALADQVYG---D--------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADG  282 (371)
T ss_pred             HHhhhhhhhcccCCchhhhccHHHhhc---C--------HHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCC
Confidence            468999999999999999999999994   2        36899999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHH---hcCccEEEEEecc
Q 021093          249 VWGGEPELLMASH---VLKKPIAVFMVVQ  274 (317)
Q Consensus       249 ~WGGeiEL~ALS~---llkv~I~V~~~~~  274 (317)
                      +||.++|+||+|.   ....++.|.....
T Consensus       283 ~~gnhie~Qa~a~~~~~~~~~~~~~~~~~  311 (371)
T KOG2605|consen  283 EPGNHIEQQAAADIYEEIEKPLNITSFKD  311 (371)
T ss_pred             CCcchHHHhhhhhhhhhccccceeecccc
Confidence            9999999999995   5556666665543

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.5e-11  Score=117.10  Aligned_cols=146  Identities=17%  Similarity=0.015  Sum_probs=101.8

Q ss_pred             hhcCCCC-CCCchhHHHhhhcCCeEEEEeCCCCchhhHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHHHHHHhhChhh
Q 021093          151 ISKIDGG-GGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSG-EEVPDEERQRELADELRAQVVDELLKRRKE  228 (317)
Q Consensus       151 ~~~~d~r-~~~~~l~~~l~~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G-~~~~~~~~~q~~h~eLR~~VvdyI~~n~de  228 (317)
                      .+++|.. ..+..+..... ...+....++|||+|+|-+|++||..+-- .++       ..-+.+|-.-..|.+++...
T Consensus       149 ~snPDl~n~~i~~~~~i~y-~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv-------~~~~~dr~~~~~~~q~~~i~  220 (306)
T COG5539         149 LSNPDLYNPAILEIDVIAY-ATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDV-------DKDSEDRYNSHPYVQRISIL  220 (306)
T ss_pred             hhCccccchhhcCcchHHH-HHhhhccccCCCceEEEeEeccccceeeeeeec-------chhHHhhccCChhhhhhhhh
Confidence            3555554 22333333333 55667788999999999999999985421 111       12367787888888888888


Q ss_pred             hhhhhc-------ccHHHHHhhhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEE
Q 021093          229 TEWFIE-------GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLF  301 (317)
Q Consensus       229 Fe~Fle-------e~feeY~~~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlY  301 (317)
                      |..|.-       ..|++|++.|+-+..||+.+|+++||.+|++|+.+++..+.      +++|++=... ....+-++-
T Consensus       221 f~g~hfD~~t~~m~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~------~ik~n~c~~~-~~~e~~~~~  293 (306)
T COG5539         221 FTGIHFDEETLAMVLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASP------SIKCNICGTG-FVGEKDYYA  293 (306)
T ss_pred             hcccccchhhhhcchHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCc------eEEeeccccc-cchhhHHHH
Confidence            877762       26999999999999999999999999999999999998754      3566532210 122223333


Q ss_pred             cCC--CCcceee
Q 021093          302 HGY--GHYDILE  311 (317)
Q Consensus       302 hg~--gHYDSLr  311 (317)
                      |.+  ||||+++
T Consensus       294 Ha~a~GH~n~~~  305 (306)
T COG5539         294 HALATGHYNFGE  305 (306)
T ss_pred             HHHhhcCccccC
Confidence            433  6999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.6e-09  Score=102.09  Aligned_cols=115  Identities=26%  Similarity=0.215  Sum_probs=94.8

Q ss_pred             EEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc-cHHHHHhhhcCCCccc-C
Q 021093          175 PFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG-DFDTYVKEIQQPYVWG-G  252 (317)
Q Consensus       175 i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee-~feeY~~~Mrk~g~WG-G  252 (317)
                      ..+...|.+|+|++.+..++.             ....+||..|+..+.+|||.|.+.+.+ +--.|+.+++++..|| |
T Consensus       114 d~p~~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG  180 (306)
T COG5539         114 DMPGQDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDG  180 (306)
T ss_pred             cCCCCCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCc
Confidence            334457899999999998861             257899999999999999999888865 7889999999999999 9


Q ss_pred             hHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceee
Q 021093          253 EPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILE  311 (317)
Q Consensus       253 eiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr  311 (317)
                      .+|+.++|+.|++.|.|++.+...     +.+|++..-   ...+.++|.++ |||...
T Consensus       181 ~ieia~iS~~l~v~i~~Vdv~~~~-----~dr~~~~~~---~q~~~i~f~g~-hfD~~t  230 (306)
T COG5539         181 CIEIAIISDQLPVRIHVVDVDKDS-----EDRYNSHPY---VQRISILFTGI-HFDEET  230 (306)
T ss_pred             eEEEeEeccccceeeeeeecchhH-----HhhccCChh---hhhhhhhhccc-ccchhh
Confidence            999999999999999999987542     346665421   35677888885 999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		1e-04

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGD 236
           ++  DG CLFRA+A        ++V  ++   E+   +R   +D L+K       ++  D
Sbjct: 50  QMKEDGACLFRAVA--------DQVYGDQDMHEV---VRKHCMDYLMKNADYFSNYVTED 98
Query: 237 FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESP 296
           F TY+   ++    G   E+   + +  +P+ V+     +  +  I  +   +Q + E P
Sbjct: 99  FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDE-P 157
Query: 297 INVLFHGYGHYD 308
           I V +H   HY+
Sbjct: 158 IRVSYHRNIHYN 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-30
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-27
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	5e-25
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-22
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	1e-09
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	1e-06
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	5e-05
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  111 bits (279), Expect = 5e-30
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGD 236
           +   DG C + +IA        +        + L +    +   E           +   
Sbjct: 35  RQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQEE-----PEARLVGLS 87

Query: 237 FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESP 296
            + Y+K +     WG   E  M +  +   I ++  V +S  +     +G+    D  + 
Sbjct: 88  LEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT-VAASDEVEAGIKFGDG---DVFTA 143

Query: 297 INVLFHGYGHYDILETFSE 315
           +N+L  G  H+D L    +
Sbjct: 144 VNLLHSGQTHFDALRILPQ 162

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  105 bits (264), Expect = 1e-27
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGD 236
           +   DG C + +IA        +        + L +    +   E     +     +   
Sbjct: 35  RQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQE-----EPEARLVGLS 87

Query: 237 FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESP 296
            + Y+K +     WG   E  M +  +   I ++  V +S  +     +G+    D  + 
Sbjct: 88  LEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT-VAASDEVEAGIKFGDG---DVFTA 143

Query: 297 INVLFHGYGHYDILETFSEQK 317
           +N+L  G  H+D L    + +
Sbjct: 144 VNLLHSGQTHFDALRILPQFE 164

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 98.9 bits (246), Expect = 5e-25
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 177 KVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKE-TEWFIEG 235
            V  D  CLF AIA+   +   +             +LR  V  E+L    +  +  ++ 
Sbjct: 24  PVLDDNSCLFHAIAY--GIFKQDS----------VRDLREMVSKEVLNNPVKFNDAILDK 71

Query: 236 DFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKES 295
               Y + I +   WGG  E+ + S  L   I V  +     + V I  + E+   +   
Sbjct: 72  PNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDI-----DAVKIEKFNEDKFDN--- 123

Query: 296 PINVLFHGYGHYDIL 310
            I +LF+G  HYD L
Sbjct: 124 YILILFNG-IHYDSL 137

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 91.0 bits (225), Expect = 3e-22
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 161 DDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVD 220
                   +       ++  DG CLFRA+A                 +++ + +R   +D
Sbjct: 47  HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVY-----------GDQDMHEVVRKHCMD 95

Query: 221 ELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLV 280
            L+K       ++  DF TY+   ++    G   E+   + +  +P+ V+          
Sbjct: 96  YLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST------ 149

Query: 281 NIANYGEEYQKDKESPINVLFHGYGHYDIL 310
              N      ++++ PI V +H   HY+ +
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSV 179

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 203 DEERQRELADELRAQVVDELLKRRKETEWFIEGD--FDTY-VKEIQQPYVWGGEPELLMA 259
           D+     L   LR      L +  K  E FIEG      +  +E++          ++  
Sbjct: 127 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 186

Query: 260 SHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDIL 310
           +  L   I V  + +  G   N       + +  E  + +L+   GHYDIL
Sbjct: 187 AQALSVSIQVEYMDRGEGGTTNP----HIFPEGSEPKVYLLYRP-GHYDIL 232

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 10/132 (7%)

Query: 183 RCLFRAIAHGACLRSGEEV-PDEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDT 239
             +   +     + S  +V  D+     +   LR      +  R      FI+   D   
Sbjct: 103 YSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKD 162

Query: 240 YV-KEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPIN 298
           +   E++         ++   S  L   + V  V       +N   + E         + 
Sbjct: 163 FCTHEVEPMATECDHIQITALSQALSIALQVEYV-DEMDTALNHHVFPE----AATPSVY 217

Query: 299 VLFHGYGHYDIL 310
           +L+    HY+IL
Sbjct: 218 LLYKT-SHYNIL 228

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Length = 454

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 36/161 (22%)

Query: 175 PFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRR-------- 226
                  G CL  ++        G    D   ++ L D L           R        
Sbjct: 191 ALWNRTAGDCLLDSVLQAT---WGIYDKDSVLRKALHDSLHDC--SHWFYTRWKDWESWY 245

Query: 227 ----------KETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVF---MVV 273
                     +E +W  + D+   +    QP     +  + + +H+L++PI V+      
Sbjct: 246 SQSFGLHFSLREEQW--QEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYK 303

Query: 274 QSSGNLVNIANYGEEY-------QKDKESPINVLFHGYGHY 307
              G  +    +   Y           +SPI  L +  GH+
Sbjct: 304 SFRGETLGYTRFQGVYLPLLWEQSFCWKSPI-ALGYTRGHF 343

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 214 LRAQVVDELLKRRKETEWFIEGDFDTYV---KEIQQPYVWGGEPELLMASHVLKKPIAVF 270
            R      L +  +E   FI+          +EI+  +       +          + + 
Sbjct: 173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIE 232

Query: 271 MVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDIL 310
            + +++              +     I +L+   GHYD++
Sbjct: 233 YMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRP-GHYDVI 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 46/349 (13%), Positives = 93/349 (26%), Gaps = 101/349 (28%)

Query: 11  PWILNSISL------LAHGSFAAHHQNRF----VYSPIHVQSPE-----RR-----RHHS 50
            ++++ I        +    +       +    V++  +V   +     R+     R   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 51  TACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSW-NAASDERPAR 109
                GV G G +            +  D C      +   +   +  W N  +   P  
Sbjct: 152 NVLIDGVLGSGKTW-----------VALDVC---LSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 110 WL-------HRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISK-----IDGG 157
            L       ++ D  W      S    +      +    E     + K  +     +   
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQAELRRLLKSKPYENCLLVLL-- 251

Query: 158 GGGDDLNVKRCEIINERPFKVTADGRC--LFRAIAHGACLRSGEEVPDEERQRELADELR 215
                 NV+  +  N   F    +  C  L                    R +++ D L 
Sbjct: 252 ------NVQNAKAWN--AF----NLSCKILLTT-----------------RFKQVTDFLS 282

Query: 216 AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKK--PIAVFMVV 273
           A     +       +          VK +   Y+     +L      +    P  + ++ 
Sbjct: 283 AATTTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIA 334

Query: 274 QSSGNLVNIANYGEEYQKDK-----ESPINVLFHGY--GHYDILETFSE 315
           +S  + +   +  +    DK     ES +NVL        +D L  F  
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.98
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.89
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.86
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.82
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.81
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.32
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.21
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	96.63

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=4.6e-38  Score=280.81  Aligned_cols=159  Identities=19%  Similarity=0.315  Sum_probs=110.8

Q ss_pred             CCCcchhhHHHHhhcCCCCCCCchhHHHhhhcCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHH
Q 021093          139 SNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQV  218 (317)
Q Consensus       139 ~~~~~~~~~~e~~~~~d~r~~~~~l~~~l~~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~V  218 (317)
                      +|+...+-.+|++..+|.+..++++++.+++++||++++||+|||||||||++||+   |.        +..|.+||+.|
T Consensus        25 ~e~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~---g~--------~~~h~~LR~~v   93 (185)
T 3pfy_A           25 DEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVY---GD--------QDMHEVVRKHC   93 (185)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHH---SC--------GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHh---CC--------chHHHHHHHHH
Confidence            35555555567777788888889999999889999999999999999999999999   32        24689999999


Q ss_pred             HHHHhhChhhhhhhhcccHHHHHhhhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEE
Q 021093          219 VDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPIN  298 (317)
Q Consensus       219 vdyI~~n~deFe~Flee~feeY~~~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~  298 (317)
                      ++||++|+++|++|++++|++||++|+++++|||++||+|||++|+++|.||+.+..  + +.|. .|.+..  ..++|+
T Consensus        94 v~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~--~-i~i~-~g~~~~--~~~~I~  167 (185)
T 3pfy_A           94 MDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTE--P-INTF-HGIHQN--EDEPIR  167 (185)
T ss_dssp             HHHHHHTHHHHTTCC-----------------CCHHHHHHHHHHHTSCEEEESSCSS--C-SEEE-CTTSCC--TTSCEE
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCC--C-eEEe-cCccCC--CCCEEE
Confidence            999999999999999999999999999999999999999999999999999997643  2 2221 243332  268999


Q ss_pred             EEEcCCCCcceeeCCC
Q 021093          299 VLFHGYGHYDILETFS  314 (317)
Q Consensus       299 LlYhg~gHYDSLr~i~  314 (317)
                      |+|++.+|||||++..
T Consensus       168 L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          168 VSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             EEEETTTEEEEEECC-
T ss_pred             EEECCCCCcccccCCC
Confidence            9999989999998763

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.98  E-value=7.6e-33  Score=251.09  Aligned_cols=127  Identities=27%  Similarity=0.362  Sum_probs=109.8

Q ss_pred             hhcCCeEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhh-hhhhcccHHHHHhhhcC
Q 021093          168 CEIINERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQ  246 (317)
Q Consensus       168 ~~~~gL~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deF-e~Flee~feeY~~~Mrk  246 (317)
                      ....+|.+++||+||||||||||+|| ...           ..|.+||+.+++||++|+++| +.|++++|++||++|++
T Consensus        15 ~~~~~l~~~~i~~DGnCLFrAva~qL-~~~-----------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~   82 (212)
T 3by4_A           15 SGENVLSVHPVLDDNSCLFHAIAYGI-FKQ-----------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILK   82 (212)
T ss_dssp             TCCSEEEEECCCCSTTHHHHHHHHHH-HSS-----------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTS
T ss_pred             CCCCCeEEEEeCCCCchHHHHHHHHh-CCc-----------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcC
Confidence            34668999999999999999999999 421           358899999999999999999 46778899999999999


Q ss_pred             CCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCCC
Q 021093          247 PYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSE  315 (317)
Q Consensus       247 ~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~d  315 (317)
                      +++|||++||+|||++|+++|.||+.+..     .+..||+++.   .++|+|+|++ +|||||+.-.|
T Consensus        83 ~~~WGg~iEL~Als~~~~~~I~V~~~~~~-----~~~~~~~~~~---~~~I~L~Y~g-~HYdsl~~~~d  142 (212)
T 3by4_A           83 MESWGGAIEIGIISDALAVAIYVVDIDAV-----KIEKFNEDKF---DNYILILFNG-IHYDSLTMNEF  142 (212)
T ss_dssp             TTSCCCHHHHHHHHHHHTCEEEEEETTTT-----EEEEESTTTC---SEEEEEEECS-SCEEEEEETTT
T ss_pred             CCEEccHHHHHHHHHHHCCCEEEEECCCC-----CeEEeCCCCC---CCeEEEEEcC-CcceEEecCCC
Confidence            99999999999999999999999997532     2568887752   5799999996 69999987443

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=3.7e-31  Score=235.87  Aligned_cols=133  Identities=16%  Similarity=0.271  Sum_probs=110.4

Q ss_pred             eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcccHHHHHhhhcCCCcccC
Q 021093          173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGG  252 (317)
Q Consensus       173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee~feeY~~~Mrk~g~WGG  252 (317)
                      +.+.+||+|||||||||++||+.+  .+.+.   .+..|.+||+.+++||++|+++  .+++++|++||++|+++++|||
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg  103 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGS  103 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCB
T ss_pred             eEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCc
Confidence            778899999999999999999842  11111   1345999999999999999998  4678899999999999999999


Q ss_pred             hHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCCCC
Q 021093          253 EPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ  316 (317)
Q Consensus       253 eiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~dk  316 (317)
                      ++||+|||++|+++|.||+.+... .+..+.+||+++.   .++|+|+|++.+|||+|+++.|.
T Consensus       104 ~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~~---~~~I~L~Y~g~~HYdsl~~~~~~  163 (185)
T 3phx_A          104 TLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV---FTAVNLLHSGQTHFDALRILPQF  163 (185)
T ss_dssp             HHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCCT---TTSEEEEEETTTEEEEEEECGGG
T ss_pred             HHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCCC---CCEEEEEECCCcCchhceECCCC
Confidence            999999999999999999977543 2345678987753   58999999998899999998653

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=1.7e-30  Score=237.39  Aligned_cols=133  Identities=16%  Similarity=0.271  Sum_probs=112.2

Q ss_pred             eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcccHHHHHhhhcCCCcccC
Q 021093          173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGG  252 (317)
Q Consensus       173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee~feeY~~~Mrk~g~WGG  252 (317)
                      +.+++||||||||||||++||+.+  .+.+.   .+..|.+||+.+++||++|+++  .+++++|++||++|+++++|||
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~--~~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG  103 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGS  103 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTT--CCTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCC
T ss_pred             eEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCC
Confidence            778999999999999999999842  11111   1245999999999999999998  4678899999999999999999


Q ss_pred             hHHHHHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeCCCCC
Q 021093          253 EPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ  316 (317)
Q Consensus       253 eiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~i~dk  316 (317)
                      ++||+|+|++|+++|+||+.+.+. ....+.+||+++.   .++|+|+|++.+|||+|+++.|.
T Consensus       104 ~iEL~AlS~~~~v~I~V~~~d~~g-~~~~i~~fge~~~---~~~I~L~Y~g~~HYdSL~~~~d~  163 (219)
T 3phu_A          104 TLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV---FTAVNLLHSGQTHFDALRILPQF  163 (219)
T ss_dssp             HHHHHHHHHHTTCCEEEEEESSSS-BEEEEEEESSCCT---TTSEEEEEETTTEEEEEEECTTT
T ss_pred             HHHHHHHHHHhCCCEEEEEecCCC-CceeEEEecCCCC---CCeEEEEECCCcCchhheECCCC
Confidence            999999999999999999987542 2345678987754   68999999998899999998764

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.89  E-value=3.2e-23  Score=190.42  Aligned_cols=99  Identities=18%  Similarity=0.236  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecC
Q 021093          210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG  286 (317)
Q Consensus       210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fG  286 (317)
                      ....||..++.||++|+++|++|+++  ++++||+ .|+.+++|||++||+|||+.|+++|.|++.++.. ..+....|.
T Consensus       131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~  209 (234)
T 1tff_A          131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP  209 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred             HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence            46779999999999999999999976  8999999 7999999999999999999999999999987653 112222443


Q ss_pred             CcccCCCCCeEEEEEcCCCCcceeeCCC
Q 021093          287 EEYQKDKESPINVLFHGYGHYDILETFS  314 (317)
Q Consensus       287 ee~~~~~~~pI~LlYhg~gHYDSLr~i~  314 (317)
                      ++    ..+.|+|+|.+ ||||+|++.+
T Consensus       210 ~~----~~~~I~LlY~p-gHYdily~~~  232 (234)
T 1tff_A          210 EA----ATPSVYLLYKT-SHYNILYAAD  232 (234)
T ss_dssp             CC----SSCSEEEEEET-TEEEEEEECC
T ss_pred             CC----CCCeEEEEECC-CCceecccCC
Confidence            32    25679999986 7999999875

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.86  E-value=2.5e-21  Score=182.79  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEe-c
Q 021093          210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIAN-Y  285 (317)
Q Consensus       210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~-f  285 (317)
                      ....||..++.||+.|+++|++|+++  ++++||+ .|+.+++|||++||+|||++|+++|.|+..++..+..+.... |
T Consensus       169 iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f  248 (284)
T 4dhi_B          169 ILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI  248 (284)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE
T ss_pred             HHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC
Confidence            47789999999999999999999975  7999999 799999999999999999999999999998775433222234 6


Q ss_pred             CCcccCCCCCeEEEEEcCCCCcceeeCCCC
Q 021093          286 GEEYQKDKESPINVLFHGYGHYDILETFSE  315 (317)
Q Consensus       286 Gee~~~~~~~pI~LlYhg~gHYDSLr~i~d  315 (317)
                       ++........|.|+|.. ||||.|++..+
T Consensus       249 -p~~~~~~~p~I~LLYrp-gHYDILY~~~p  276 (284)
T 4dhi_B          249 -PSDDQQIAPEITLLYRP-GHYDVIYKKDS  276 (284)
T ss_dssp             -SCCCSCCCCSEEEEEET-TEEEEEEECC-
T ss_pred             -CCCCCCCCCEEEEeecC-CCccccccCCC
Confidence             33221224679999977 79999998765

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.82  E-value=6e-20  Score=179.63  Aligned_cols=98  Identities=26%  Similarity=0.336  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecC
Q 021093          210 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG  286 (317)
Q Consensus       210 ~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fG  286 (317)
                      ....||..++.||+.|+++|++|+++  ++++||+ .|+..++|||++||+|||+.|+++|.|+..++..+..+....|.
T Consensus       299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~  378 (399)
T 4ddg_A          299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP  378 (399)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence            56789999999999999999999986  7999999 89999999999999999999999999998776433333334564


Q ss_pred             CcccCCCCCeEEEEEcCCCCcceeeC
Q 021093          287 EEYQKDKESPINVLFHGYGHYDILET  312 (317)
Q Consensus       287 ee~~~~~~~pI~LlYhg~gHYDSLr~  312 (317)
                      ++.    ...|+|+|.. ||||.|++
T Consensus       379 ~~~----~~~I~LLYrP-gHYDiLY~  399 (399)
T 4ddg_A          379 EGS----EPKVYLLYRP-GHYDILYK  399 (399)
T ss_dssp             TTC----CCCCEEEEET-BEEEEEEC
T ss_pred             CCC----CCEEEEEEcC-CccccCCC
Confidence            322    5679999955 89999985

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.81  E-value=6.5e-20  Score=168.22  Aligned_cols=116  Identities=22%  Similarity=0.279  Sum_probs=97.9

Q ss_pred             CCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHh-hhcCCCcccChHHH
Q 021093          180 ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPEL  256 (317)
Q Consensus       180 gDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~-~Mrk~g~WGGeiEL  256 (317)
                      .||+||++++.+|...            ......||..+++||++|+++|++|+++  ++++||+ .++.+++|||++||
T Consensus       116 ~~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i  183 (234)
T 2zfy_A          116 TSVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHI  183 (234)
T ss_dssp             CCHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHH
T ss_pred             CCHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHH
Confidence            3999999999999762            2468999999999999999999999976  8999997 69999999999999


Q ss_pred             HHHHHhcCccEEEEEeccCCCcceeEEecCCcccCCCCCeEEEEEcCCCCcceeeC
Q 021093          257 LMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET  312 (317)
Q Consensus       257 ~ALS~llkv~I~V~~~~~~~~~~~~I~~fGee~~~~~~~pI~LlYhg~gHYDSLr~  312 (317)
                      +|||++|+++|.|++.++..++.+....|+++    ..+.|+|+|+. ||||+|++
T Consensus       184 ~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~----~~p~I~LlY~p-gHYdiLy~  234 (234)
T 2zfy_A          184 IALAQALSVSIQVEYMDRGEGGTTNPHIFPEG----SEPKVYLLYRP-GHYDILYK  234 (234)
T ss_dssp             HHHHHHHTCCEEEEECC-CCSSCCEEEEESTT----CCCSEEEEEET-TEEEEEEC
T ss_pred             HHHHHHhCCCEEEEEcCCCCCCcccceeCCCC----CCCeEEEEECC-CCcccCCC
Confidence            99999999999999987664333444566543    25689999986 79999985

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.32  E-value=2.4e-06  Score=83.15  Aligned_cols=139  Identities=22%  Similarity=0.315  Sum_probs=77.1

Q ss_pred             eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhh----hhhhh-----------cccH
Q 021093          173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKE----TEWFI-----------EGDF  237 (317)
Q Consensus       173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~de----Fe~Fl-----------ee~f  237 (317)
                      |......||||||.+|++..++   |..=.+-.+++..+..||......++.++..    +..|.           +.+|
T Consensus       112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW  188 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW  188 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence            4455568999999999999999   4321122223444444444322222222221    11222           1246


Q ss_pred             HHHHhhhcCCC------c-c--cChHHHHHHHHhcCccEEEEEecc--C--CCcceeEEecCCcc-------cCCCCCeE
Q 021093          238 DTYVKEIQQPY------V-W--GGEPELLMASHVLKKPIAVFMVVQ--S--SGNLVNIANYGEEY-------QKDKESPI  297 (317)
Q Consensus       238 eeY~~~Mrk~g------~-W--GGeiEL~ALS~llkv~I~V~~~~~--~--~~~~~~I~~fGee~-------~~~~~~pI  297 (317)
                      ++-++.-..+.      . +  =-++-+.+||+++++||+||.+.-  .  .+..+.-+.|+.-|       ......||
T Consensus       189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI  268 (390)
T 3dkb_A          189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI  268 (390)
T ss_dssp             HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred             HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence            55444333221      1 1  237789999999999999996431  1  11111112333222       11236899


Q ss_pred             EEEEcCCCCcceeeCCCC
Q 021093          298 NVLFHGYGHYDILETFSE  315 (317)
Q Consensus       298 ~LlYhg~gHYDSLr~i~d  315 (317)
                      .|.|.. |||.+|..+++
T Consensus       269 ~LgY~s-~HFsaLV~me~  285 (390)
T 3dkb_A          269 VLGYDS-HHFVPLVTLKD  285 (390)
T ss_dssp             EEEECS-SCEEEEEEBCS
T ss_pred             EEEecc-Cceeeeeeccc
Confidence            999988 79999999875

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.21  E-value=6.9e-06  Score=81.19  Aligned_cols=139  Identities=22%  Similarity=0.316  Sum_probs=85.4

Q ss_pred             eEEEEeCCCCchhhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhh---------hh--c----ccH
Q 021093          173 ERPFKVTADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEW---------FI--E----GDF  237 (317)
Q Consensus       173 L~i~~IpgDGNCLFRAVA~qL~~~~G~~~~~~~~~q~~h~eLR~~VvdyI~~n~deFe~---------Fl--e----e~f  237 (317)
                      |......||||||-+|++..++   |..=.+-.+++..+..|+..-. -+..++..+|.         |.  +    .+|
T Consensus       189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~~-~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW  264 (454)
T 3zrh_A          189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCSH-WFYTRWKDWESWYSQSFGLHFSLREEQWQEDW  264 (454)
T ss_dssp             EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred             eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence            4455568999999999999999   5432333344455555554222 23344433222         22  2    246


Q ss_pred             HHHHhhhcCCCcccChHHHHHHHHhcCccEEEEEeccCC---CcceeEEecCCcc-------cCCCCCeEEEEEcCCCCc
Q 021093          238 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSS---GNLVNIANYGEEY-------QKDKESPINVLFHGYGHY  307 (317)
Q Consensus       238 eeY~~~Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~---~~~~~I~~fGee~-------~~~~~~pI~LlYhg~gHY  307 (317)
                      +.-++.-..+++==-++-+.+||+++++||+||......   +..+.-+.||.-|       ......||.|.|.. +||
T Consensus       265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHF  343 (454)
T 3zrh_A          265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHF  343 (454)
T ss_dssp             HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEE
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cce
Confidence            665665666776666788999999999999999864211   1001011233211       11236899999987 699


Q ss_pred             ceeeCCCCC
Q 021093          308 DILETFSEQ  316 (317)
Q Consensus       308 DSLr~i~dk  316 (317)
                      .+|..++++
T Consensus       344 saLV~~~~~  352 (454)
T 3zrh_A          344 SALVAMEND  352 (454)
T ss_dssp             EEEEEBCCC
T ss_pred             eeeeecccc
Confidence            999998763

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=96.63  E-value=0.0033  Score=57.33  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             eEEEEeCCCCchhhHHHHHHHH
Q 021093          173 ERPFKVTADGRCLFRAIAHGAC  194 (317)
Q Consensus       173 L~i~~IpgDGNCLFRAVA~qL~  194 (317)
                      -..+.|.|||||+|||++.++.
T Consensus        43 ~~~R~vRgDGNCFyRaf~f~yl   64 (234)
T 2zfy_A           43 SYIRKTRPDGNCFYRAFGFSHL   64 (234)
T ss_dssp             CEEECBCCSSCHHHHHHHHHHH
T ss_pred             cceeeccCCccHHHHHHHHHHH
Confidence            3678999999999999998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	4e-11

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 4e-11
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 214 LRAQVVDELLKRRKETEWFIEGDF---DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVF 270
           LR      +  R      FI+ +    D    E++         ++   S  L   + V 
Sbjct: 129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE 188

Query: 271 MVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDIL 310
            V +     +N   + E         + +L+    HY+IL
Sbjct: 189 YVDEMDTA-LNHHVFPEAA----TPSVYLLYKT-SHYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.85

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-21  Score=173.75  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhhChhhhhhhhcc--cHHHHHhh-hcCCCcccChHHHHHHHHhcCccEEEEEeccCCCcceeEEecCC
Q 021093          211 ADELRAQVVDELLKRRKETEWFIEG--DFDTYVKE-IQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGE  287 (317)
Q Consensus       211 h~eLR~~VvdyI~~n~deFe~Flee--~feeY~~~-Mrk~g~WGGeiEL~ALS~llkv~I~V~~~~~~~~~~~~I~~fGe  287 (317)
                      ...||..++.||++|++.|++|+++  ++++||.+ |.++++|||++||.|||++|+++|.|+..++.... +....+++
T Consensus       126 v~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~-~~~~~~~~  204 (228)
T d1tffa_         126 VQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTA-LNHHVFPE  204 (228)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCC
T ss_pred             HHHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCc-cccccCCC
Confidence            4468999999999999999999965  69999986 88999999999999999999999999988765422 22223332


Q ss_pred             cccCCCCCeEEEEEcCCCCcceeeCCCC
Q 021093          288 EYQKDKESPINVLFHGYGHYDILETFSE  315 (317)
Q Consensus       288 e~~~~~~~pI~LlYhg~gHYDSLr~i~d  315 (317)
                      +    ...+|+|+|.+ ||||+|++.+.
T Consensus       205 ~----~~~~I~Lly~p-gHYdiLY~~~~  227 (228)
T d1tffa_         205 A----ATPSVYLLYKT-SHYNILYAADK  227 (228)
T ss_dssp             C----SSCSEEEEEET-TEEEEEEECCC
T ss_pred             C----CCCEEEEEeCC-CCcccCccCCC
Confidence            2    25689999976 79999998764