Citrus Sinensis ID: 021096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHccccccEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrnfplsrgtvsgILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFiractpasgedssehghfVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMlsplaipvkmtlfpATKKrirsagssdslaqeggdstqtdplltpsssaaylgsfyetedfsdVEILLAIGegavkekrrprrgedfklgEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNfagrlgsgvlseHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Flexible Loop (DISEMBL)
mrnfplsrgTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAgssdslaqeggdstqtdplltPSSSAAYLGSFYETEDFSDVEILLAigegavkekrrprrgedfklgEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Low Complexity Region (SEG)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTlllflalgipliclVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Disordered region (IsUnstruct)
*********TVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA*******HGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA**********************************AYLGSFYETEDFSDVEILLAIGEGAV**********DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAY**
Disordered Region (DISOPRED)
*RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACT************FVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFP*******************************************************************RRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Disordered Region (DISEMBL)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTP********HGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKK*********************DPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Disordered Region (DISPRO)
*RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA********************************************************EGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVLFEKFQTTVEVFVSAYMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
24461856	564	nodulin-like protein [Citrus trifoliata]	0.876	0.492	0.989	1e-155
224134428	564	predicted protein [Populus trichocarpa]	0.876	0.492	0.701	1e-110
225443039	564	PREDICTED: uncharacterized membrane prot	0.876	0.492	0.688	1e-103
224054332	564	predicted protein [Populus trichocarpa]	0.870	0.489	0.697	1e-103
449468956	565	PREDICTED: uncharacterized protein LOC10	0.886	0.497	0.641	1e-103
449516077	565	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.886	0.497	0.641	1e-102
147775997	504	hypothetical protein VITISV_014065 [Viti	0.851	0.535	0.693	1e-100
359484689	573	PREDICTED: uncharacterized protein LOC10	0.876	0.485	0.613	5e-98
297839885	563	hypothetical protein ARALYDRAFT_895939 [	0.977	0.550	0.585	3e-97
296084552	512	unnamed protein product [Vitis vinifera]	0.854	0.529	0.607	2e-95

>gi|24461856|gb|AAN62343.1|AF506028_10 nodulin-like protein [Citrus trifoliata]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/278 (98%), Positives = 276/278 (99%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI
Sbjct: 134 MRNFPLSRGTVAGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML
Sbjct: 194 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLAIPVKMTLFPATKKRIRSA SSDSLAQEGGDST TDPLLTPSSSAAYLGSFYETEDF
Sbjct: 254 SPLAIPVKMTLFPATKKRIRSADSSDSLAQEGGDSTPTDPLLTPSSSAAYLGSFYETEDF 313

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ
Sbjct: 314 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 373

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS
Sbjct: 374 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 411

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134428|ref|XP_002327403.1| predicted protein [Populus trichocarpa] gi|222835957|gb|EEE74378.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/278 (70%), Positives = 232/278 (83%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTVSGILKG AGI+AA+YTV+Y++VL+ SA+ LLLFL L IP++CL   YFI
Sbjct: 134 MRNFPLSRGTVSGILKGCAGISAAVYTVVYSLVLKGSASNLLLFLTLVIPILCLAMMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDSSEH HF+FTQAA + LAIY++  +I    VSLSDA+SYILVAI+V+F++
Sbjct: 194 RPCTPASGEDSSEHVHFLFTQAAVILLAIYLLITAIIGTVVSLSDAVSYILVAIVVIFLI 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLAIPVKMT+FP+  K+   + SSD L    G++T TDPLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAIPVKMTIFPSRPKKNPPSDSSDHLMLGEGETTPTDPLLTPSSSATSLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SDVEILLA+GEGAVK+KRRP+RGEDFK+ EA +KADFWLLW VYFLGVG+GVT+LNNLAQ
Sbjct: 314 SDVEILLAMGEGAVKKKRRPKRGEDFKIHEALIKADFWLLWVVYFLGVGSGVTILNNLAQ 373

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           IG A G+ DTT LL LF  CNF GR+GSG +SEH+VRS
Sbjct: 374 IGAAFGLEDTTILLALFGFCNFVGRIGSGAVSEHFVRS 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443039|ref|XP_002270754.1| PREDICTED: uncharacterized membrane protein YMR155W [Vitis vinifera] gi|297743570|emb|CBI36437.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/279 (68%), Positives = 230/279 (82%), Gaps = 1/279 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C    YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 191

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHF+FTQAASV L IY++A ++  D  + SDALS     IMV+F+L
Sbjct: 192 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 251

Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
            PLAIP+KMTLFP+ +KK +   GSSDSL Q  G+S QT+PLLTPSSSA  LGSF+E E 
Sbjct: 252 CPLAIPLKMTLFPSNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 311

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
            SD+++LLA+GEGA+K+KR+P+RGEDFK  EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 312 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 371

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           QIGVA GV DTT LL LFS CNF GRL  GV+SE++VR+
Sbjct: 372 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGVVSEYFVRT 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054332|ref|XP_002298207.1| predicted protein [Populus trichocarpa] gi|222845465|gb|EEE83012.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/278 (69%), Positives = 224/278 (80%), Gaps = 2/278 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTVSGILKGYAGIAAA+YTV+Y +VL+ S + LLL L LGIP++CL   YFI
Sbjct: 134 MRNFPLSRGTVSGILKGYAGIAAAVYTVIYKLVLKESDSELLLILTLGIPILCLAMMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C+PASG DSSEH HF+F+Q ASV LA+Y++  +I S  VSLSD +SYILV IMV+ ++
Sbjct: 194 RPCSPASGVDSSEHVHFIFSQVASVLLALYLLITTIISGVVSLSDTVSYILVLIMVIILM 253

Query: 121 SPLAIPVKMTLFPATKKR-IRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
           SPLAIPVKMTLFPA  KR +  + SSD L  + G+ST TD LLTPSSS   LGSFYE ED
Sbjct: 254 SPLAIPVKMTLFPAEHKRHVPPSDSSDHLVPKEGESTPTDSLLTPSSSGTNLGSFYENED 313

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
             D  +LLA+GEGAVK KRRPRRGEDFK+ EA +KADFWLLW V FLGVGAGVTVLNNLA
Sbjct: 314 ALDAGMLLAVGEGAVK-KRRPRRGEDFKIREALIKADFWLLWVVSFLGVGAGVTVLNNLA 372

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
           QIGVA G+ DTT LL LFS CNF GR+GSG +SEH+VR
Sbjct: 373 QIGVAFGLEDTTLLLTLFSFCNFVGRIGSGAISEHFVR 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468956|ref|XP_004152187.1| PREDICTED: uncharacterized protein LOC101211550 [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/282 (64%), Positives = 226/282 (80%), Gaps = 1/282 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA  LLLFLA+GIP++CL   YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPAS ED SE  HF+FTQAA V L +++V+ +I     + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLGLFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMT+   TK       SS+ LA    DS+Q +PLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
           SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281
           QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+VRS ++
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMI 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516077|ref|XP_004165074.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223430 [Cucumis sativus]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/282 (64%), Positives = 225/282 (79%), Gaps = 1/282 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA  LLLFLA+GIP++CL   YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPAS ED SE  HF+FTQAA V L  ++V+ +I     + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLXSFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMT+   TK       SS+ LA    DS+Q +PLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
           SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281
           QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+VRS ++
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMI 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775997|emb|CAN69082.1| hypothetical protein VITISV_014065 [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/271 (69%), Positives = 221/271 (81%), Gaps = 1/271 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C    YFI
Sbjct: 79  MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 138

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHF+FTQAASV L IY++A ++  D  + SDALS     IMV+F+L
Sbjct: 139 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 198

Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
            PLAIP+KMTLFP  +KK +   GSSDSL Q  G+S QT+PLLTPSSSA  LGSF+E E 
Sbjct: 199 CPLAIPLKMTLFPTNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 258

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
            SD+++LLA+GEGA+K+KR+P+RGEDFK  EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 259 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 318

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGV 270
           QIGVA GV DTT LL LFS CNF GRL  GV
Sbjct: 319 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGV 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484689|ref|XP_002268798.2| PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/282 (61%), Positives = 221/282 (78%), Gaps = 4/282 (1%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +Y   L  S++ LL+FLALG+PLIC    YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 191

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDS++HGHF+FTQAASV L  Y++  +I +D  SLS  +SY  +A MV+ ++
Sbjct: 192 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 251

Query: 121 SPLAIPVKMTLFPATKKRI----RSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYE 176
           +PLAIP+KMTL P  + +     +  GSS+S+ Q   ++ +T+PLLTPSSS A LGSF++
Sbjct: 252 APLAIPIKMTLNPTNRSKSGMLNQPVGSSESMLQGEENADKTEPLLTPSSSTASLGSFHK 311

Query: 177 TEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLN 236
            +  S++++LLA GEGAVK+KRRPRRGEDFK  EA VK DFWLL+ VYF GVG+GVTVLN
Sbjct: 312 NDCVSEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLN 371

Query: 237 NLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           NLAQIG+A GV++TT LLCLFS CNF GRLG G +SEH++RS
Sbjct: 372 NLAQIGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRS 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839885|ref|XP_002887824.1| hypothetical protein ARALYDRAFT_895939 [Arabidopsis lyrata subsp. lyrata] gi|297333665|gb|EFH64083.1| hypothetical protein ARALYDRAFT_895939 [Arabidopsis lyrata subsp. lyrata]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 185/316 (58%), Positives = 230/316 (72%), Gaps = 6/316 (1%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SAT LLLFL +GIP+ICL   YFI
Sbjct: 134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSATNLLLFLTVGIPVICLTVMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C PA+GED SE  +F F  A S+  A Y+V  ++ S+   L   L Y+LVAIMV+ +L
Sbjct: 194 RPCIPATGEDPSEPMYFAFLLATSILFAAYLVVTTVVSEVFILPSILKYVLVAIMVLLLL 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMTLF +  K     GSSDSLA+E G  T  +PLLTPS+SA+ LG  +E +D 
Sbjct: 254 SPLAVPIKMTLFRSNAKS-SPLGSSDSLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SD+EILLA GEGAVK+KR+PRRGEDFKLG+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct: 311 SDMEILLAEGEGAVKKKRKPRRGEDFKLGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRKCKCFLVL 300
           IG A G+ DTT LLCLFS  NF GRL SG +SEH+VRS  L    R+I +G      +  
Sbjct: 371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLP---RTIWMGAAQLVMVFT 427

Query: 301 FEKFQTTVEVFVSAYM 316
           F  F   ++  +S Y+
Sbjct: 428 FLLFAMAIDHTMSIYV 443

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084552|emb|CBI25573.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/278 (60%), Positives = 215/278 (77%), Gaps = 7/278 (2%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +Y   L  S++ LL+FLALG+PLIC    YFI
Sbjct: 82  MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 141

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDS++HGHF+FTQAASV L  Y++  +I +D  SLS  +SY  +A MV+ ++
Sbjct: 142 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 201

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           +PLAIP+KMTL P  +       S   +  +  ++ +T+PLLTPSSS A LGSF++ +  
Sbjct: 202 APLAIPIKMTLNPTNR-------SKSGMLNQPENADKTEPLLTPSSSTASLGSFHKNDCV 254

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           S++++LLA GEGAVK+KRRPRRGEDFK  EA VK DFWLL+ VYF GVG+GVTVLNNLAQ
Sbjct: 255 SEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLNNLAQ 314

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRS 278
           IG+A GV++TT LLCLFS CNF GRLG G +SEH++RS
Sbjct: 315 IGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRS 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.876	0.495	0.576	7.6e-80
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.873	0.474	0.324	3e-34
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.845	0.462	0.309	2.4e-32
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.861	0.481	0.286	4.7e-29
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.403	0.221	0.287	5.4e-17
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.539	0.316	0.324	8.9e-14
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.539	0.316	0.324	8.9e-14
TAIR|locus:2011241	526	AT1G18940 [Arabidopsis thalian	0.277	0.167	0.333	2.4e-13
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.548	0.318	0.316	1.6e-12
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.233	0.140	0.368	1.7e-12

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 162/281 (57%), Positives = 199/281 (70%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SA                   YFI
Sbjct:   134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVICLTVMYFI 193

Query:    61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
             R C PA+GED SE  +F F    S+  A Y+V  ++ S+   L   L Y+LVAIMV+ +L
Sbjct:   194 RPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVLVAIMVLLLL 253

Query:   121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
             SPLA+P+KMTLF +  K     GSSD+LA+E G  T  +PLLTPS+SA+ LG  +E +D 
Sbjct:   254 SPLAVPIKMTLFRSNAKS-SPLGSSDNLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310

Query:   181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
             SD+EILLA  EGAVK+KR+PRRGEDFK G+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct:   311 SDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370

Query:   241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL 281
             IG A G+ DTT LLCLFS  NF GRL SG +SEH+VRS  L
Sbjct:   371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTL 411

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 3.0e-34, P = 3.0e-34
 Identities = 95/293 (32%), Positives = 147/293 (50%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG V GILKG+AG+  AI + +Y M+  +   +                 +FI
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFFI 196

Query:    61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
             R         SS+   F    A  + LA Y++A+ +  D++ LS ++      ++   +L
Sbjct:   197 RPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLFAILL 256

Query:   121 SPLAIPVKMTLFPATKK---RIRSAGSSDSLAQEGGDSTQTD--PLLTPSS-------SA 168
              P+ IP+  + F A+      +      D   Q+ G ST  D  P L  S          
Sbjct:   257 VPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIFSEVEDEKPKEV 316

Query:   169 AYLGSFYETEDFSDVE--ILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLLWFVY 224
               L +    +  + ++  ++ A  EGAV+ KRR  P RGEDF L +A VKADFWL++F  
Sbjct:   317 DLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKADFWLIFFSL 376

Query:   225 FLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
              LG G+G+TV++NL Q+  +LG ++T   + + S+ NF GR+G G  SE  VR
Sbjct:   377 LLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELIVR 429

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.4e-32, P = 2.4e-32
 Identities = 92/297 (30%), Positives = 148/297 (49%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG V GILKG+AG+  AI + +Y M+  ++  +                 +FI
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFI 196

Query:    61 RACTPASGEDS---SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVV 117
             R   P  G      ++   F F     + LA Y++++ +  D V +S  +  +   ++ V
Sbjct:   197 R---PVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFV 253

Query:   118 FMLSPLAIPVKMTLFPAT-------------KKRIRSAG--SSDSLAQEGGDSTQTDPLL 162
              ++ P+ +P+  + F  T             K+  +  G  + D +  E  D    D  L
Sbjct:   254 ILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGLQTPDLILSEVEDEKPKDVDL 313

Query:   163 TPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLL 220
              P+S        ++       +++ A  EGAV+  RR  P RGEDF L +A VKADFWL+
Sbjct:   314 LPASER------HKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKADFWLI 367

Query:   221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
             +F   LG G+G+TV++NL Q+  +LG ++T  L+ + S+ NF GR+G G  SE  VR
Sbjct:   368 FFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELVVR 424

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 4.7e-29, P = 4.7e-29
 Identities = 80/279 (28%), Positives = 136/279 (48%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             +RNF  +RG VSGILKGY G++ AI+T L N +  +   +                 +F+
Sbjct:   137 IRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFFL 196

Query:    61 RACTPAS--GEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVF 118
             R   P++   ED+ E  +F      +V +A+Y+ +  I       + A S    +I+++ 
Sbjct:   197 REIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIG---IKTGAFSIAFASILLIL 253

Query:   119 MLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETE 178
             + SP+A+P    +           G  D      G   + +  +  +++AA        +
Sbjct:   254 LASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGAAAAADNELPPSLK 313

Query:   179 DFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNL 238
               S+ E     G     EK+RP  GE+  + EA +  DFW+L+  +  GVG G+ V+NN+
Sbjct:   314 PLSNEEEENH-GTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNM 372

Query:   239 AQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVR 277
              QIG+ALG  D +  + + S+  F GR+ SG +SEH+++
Sbjct:   373 GQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
 Identities = 38/132 (28%), Positives = 61/132 (46%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG + G+LKGY G++ AI+T LY  +  + + +              V  Y I
Sbjct:   138 VKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLI 197

Query:    61 RACTPASGEDS-SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFM 119
             R        +  S    F++    S+FLA++++A++I    V  S A       I    +
Sbjct:   198 REKKVVRQRNELSVFYQFLYI---SIFLALFLMAMNIAEKQVHFSKAAYAASATICCALL 254

Query:   120 LSPLAIPVKMTL 131
               PL + VK  L
Sbjct:   255 FVPLTVSVKQEL 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 61/188 (32%), Positives = 96/188 (51%)

Query:   104 SDALSYILV-AIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162
             SD L ++ +    VV  +  L + V  ++F  T+  I ++G+   +           P+L
Sbjct:   210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFM-------VVPVL 262

Query:   163 TPSSSAAYLG----SFYETEDFSDVE-----ILLAIGEGAVKEKRRPRRGEDFKLGEAFV 213
              P SS    G    S    E  S+V+      L+   +   ++KR P  GEDF L +A  
Sbjct:   263 VPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPCIGEDFTLLQALG 322

Query:   214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSE 273
             +ADFWL++    LGVG+G+T+++NL QI  +LG ++T   + L S+ NF GR+  G  SE
Sbjct:   323 QADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYFSE 382

Query:   274 HYVRSLLL 281
               +R L L
Sbjct:   383 LIIRKLSL 390

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 61/188 (32%), Positives = 96/188 (51%)

Query:   104 SDALSYILV-AIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162
             SD L ++ +    VV  +  L + V  ++F  T+  I ++G+   +           P+L
Sbjct:   210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFM-------VVPVL 262

Query:   163 TPSSSAAYLG----SFYETEDFSDVE-----ILLAIGEGAVKEKRRPRRGEDFKLGEAFV 213
              P SS    G    S    E  S+V+      L+   +   ++KR P  GEDF L +A  
Sbjct:   263 VPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPCIGEDFTLLQALG 322

Query:   214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSE 273
             +ADFWL++    LGVG+G+T+++NL QI  +LG ++T   + L S+ NF GR+  G  SE
Sbjct:   323 QADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYFSE 382

Query:   274 HYVRSLLL 281
               +R L L
Sbjct:   383 LIIRKLSL 390

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 32/96 (33%), Positives = 54/96 (56%)

Query:   204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCN 261
             +   L +A    DFWLL+     G+G+G++ +NN+ QIG +L     +   LL L+++ N
Sbjct:   304 KSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWN 363

Query:   262 FAGRLGSGVLSE---H---YVRSLLLCSYLRSIKLG 291
             F GR G G +S+   H   + R LL+ + L ++ +G
Sbjct:   364 FIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIG 399

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 62/196 (31%), Positives = 102/196 (52%)

Query:    86 FLAIYVVAISITSDYVSLSDALSYILVAIMVVF---MLSPLAIPVKMTLFPATKKRIRSA 142
             F    +VA+ + + Y+   D +        V F   +L  LA P+ +  F +  K + + 
Sbjct:   213 FTIFNIVAV-VVAVYLQSYDIIGIKTGVFSVAFASILLFLLASPIAIP-FHSFIKSL-NY 269

Query:   143 GSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIG-EGAVKEKRRPR 201
             G  D L  EG    Q +PLL    +AA      E E    V ++ A+  E   K++++P 
Sbjct:   270 GEQDDL--EG--RIQ-EPLLRSEIAAA------EKE----VIVVAAVAAEEEEKKRKKPV 314

Query:   202 RGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCN 261
              GED  + EA +  DFW+L+  +  GVG G+ V+NN+ QIG+ALG  + +  + + S+  
Sbjct:   315 LGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSIFVSMTSIWG 374

Query:   262 FAGRLGSGVLSEHYVR 277
             F GR+ SG LSE++++
Sbjct:   375 FFGRILSGTLSEYFLK 390

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query:   205 DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNF 262
             D  + EA    +FWLL+     G+G+G+  +NN+ Q+G +L  +      L+ L+S+ NF
Sbjct:   305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364

Query:   263 AGRLGSGVLSEHYVRS 278
              GR GSG +S+ Y+ S
Sbjct:   365 LGRFGSGYISDTYLHS 380

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	9e-49
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-04

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  162 bits (413), Expect = 9e-49
 Identities = 66/127 (51%), Positives = 82/127 (64%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           +RNFP SRG V GILKGYAG++AAIYT LY  +  N A++LLL  AL   ++ LV  YFI
Sbjct: 122 IRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYFI 181

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C    GE  SE   F+     SV LA+Y+VA+SI S    LS A  Y L AIMV+ +L
Sbjct: 182 RPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLLL 241

Query: 121 SPLAIPV 127
            PLA+P+
Sbjct: 242 VPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 185 ILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA 244
            L+    G + +       +D+ + E      FW+L+  +FL   +G+ ++      G +
Sbjct: 175 FLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS 234

Query: 245 LGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVR 277
           LG++D      + + S+ N  GR   G LS+   R
Sbjct: 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGR 269

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PTZ00207	591	hypothetical protein; Provisional	100.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.17
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.0
TIGR00893	399	2A0114 d-galactonate transporter.	97.68
PLN00028	476	nitrate transmembrane transporter; Provisional	97.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.38
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.36
PRK11663	434	regulatory protein UhpC; Provisional	97.23
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.2
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.17
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.11
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.79
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.46
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.43
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.15
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.87
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.85
PRK09705	393	cynX putative cyanate transporter; Provisional	95.8
PRK09528	420	lacY galactoside permease; Reviewed	95.74
KOG2533	495	consensus Permease of the major facilitator superf	95.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.64
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.23
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	95.16
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.03
PRK10213	394	nepI ribonucleoside transporter; Reviewed	94.98
KOG0569	485	consensus Permease of the major facilitator superf	94.84
PRK03633	381	putative MFS family transporter protein; Provision	94.77
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	94.48
PRK03545	390	putative arabinose transporter; Provisional	94.33
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	94.19
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.16
PRK10504	471	putative transporter; Provisional	94.01
PRK11652	394	emrD multidrug resistance protein D; Provisional	93.85
PRK03699	394	putative transporter; Provisional	93.79
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.7
PRK10091	382	MFS transport protein AraJ; Provisional	93.69
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	93.36
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	93.32
PRK12307	426	putative sialic acid transporter; Provisional	93.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	93.2
PRK03699	394	putative transporter; Provisional	93.17
PRK12382	392	putative transporter; Provisional	93.15
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	93.12
PRK09874	408	drug efflux system protein MdtG; Provisional	93.06
TIGR00900	365	2A0121 H+ Antiporter protein.	93.04
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	92.97
PRK10091	382	MFS transport protein AraJ; Provisional	92.86
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	92.82
PRK09528	420	lacY galactoside permease; Reviewed	92.79
PRK10133	438	L-fucose transporter; Provisional	92.65
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	92.62
PRK03633	381	putative MFS family transporter protein; Provision	92.61
KOG2532	466	consensus Permease of the major facilitator superf	92.53
PRK11195	393	lysophospholipid transporter LplT; Provisional	92.49
PRK03893	496	putative sialic acid transporter; Provisional	92.43
TIGR00891	405	2A0112 putative sialic acid transporter.	92.38
PRK10054	395	putative transporter; Provisional	92.36
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.34
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	92.34
PRK03545	390	putative arabinose transporter; Provisional	92.11
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	92.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	91.92
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	91.77
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	91.7
TIGR00897	402	2A0118 polyol permease family. This family of prot	91.52
PRK11663	434	regulatory protein UhpC; Provisional	91.5
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	91.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	91.38
PRK10406	432	alpha-ketoglutarate transporter; Provisional	91.24
PRK10473	392	multidrug efflux system protein MdtL; Provisional	91.07
TIGR00895	398	2A0115 benzoate transport.	91.0
TIGR00901	356	2A0125 AmpG-related permease.	90.99
PRK10489	417	enterobactin exporter EntS; Provisional	90.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	90.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	90.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	90.7
TIGR00891	405	2A0112 putative sialic acid transporter.	90.67
TIGR00900	365	2A0121 H+ Antiporter protein.	90.51
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	90.51
PRK15075	434	citrate-proton symporter; Provisional	90.41
PLN00028	476	nitrate transmembrane transporter; Provisional	90.24
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	90.22
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	89.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	89.84
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	89.73
TIGR00898	505	2A0119 cation transport protein.	89.67
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	89.65
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	89.61
PRK11043	401	putative transporter; Provisional	89.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	89.05
PRK05122	399	major facilitator superfamily transporter; Provisi	88.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	88.62
PRK09584	500	tppB putative tripeptide transporter permease; Rev	88.55
PRK12307	426	putative sialic acid transporter; Provisional	88.53
PRK11043	401	putative transporter; Provisional	88.5
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	88.44
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	88.32
PRK10473	392	multidrug efflux system protein MdtL; Provisional	88.24
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	87.96
TIGR00892	455	2A0113 monocarboxylate transporter 1.	87.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	87.37
PRK05122	399	major facilitator superfamily transporter; Provisi	87.27
TIGR00895	398	2A0115 benzoate transport.	87.18
PRK10133	438	L-fucose transporter; Provisional	86.51
PRK10213	394	nepI ribonucleoside transporter; Reviewed	86.13
TIGR00893	399	2A0114 d-galactonate transporter.	85.6
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	85.5
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	85.28
PF13347	428	MFS_2: MFS/sugar transport protein	85.27
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	84.87
PRK09705	393	cynX putative cyanate transporter; Provisional	84.86
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	84.69
PRK10504	471	putative transporter; Provisional	84.52
PRK15462	493	dipeptide/tripeptide permease D; Provisional	84.42
TIGR00805	633	oat sodium-independent organic anion transporter.	84.19
PRK10642	490	proline/glycine betaine transporter; Provisional	83.85
PRK10207	489	dipeptide/tripeptide permease B; Provisional	83.3
PRK03893	496	putative sialic acid transporter; Provisional	83.29
PRK14995	495	methyl viologen resistance protein SmvA; Provision	83.25
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	82.81
PRK10077	479	xylE D-xylose transporter XylE; Provisional	82.66
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	82.52
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	82.19
PTZ00207	591	hypothetical protein; Provisional	81.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	81.57
PRK11902	402	ampG muropeptide transporter; Reviewed	81.55
PRK12382	392	putative transporter; Provisional	80.91
PRK15011	393	sugar efflux transporter B; Provisional	80.62
PRK09848	448	glucuronide transporter; Provisional	80.12
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	80.12

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-40  Score=335.48  Aligned_cols=270  Identities=20%  Similarity=0.271  Sum_probs=207.4

Q ss_pred             ccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeeeeecCCCCC------CCCCCCc
Q 021096            2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG------EDSSEHG   75 (317)
Q Consensus         2 ~nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~~d~~~fllfLa~~~~~v~~l~~~fir~~p~~~~------~~~~~~~   75 (317)
                      +|||++||+++|+.|++.|+|++|+++++.+++.++.+.+++++++++.++++++++++|.+|++..      .+++|+.
T Consensus       147 ~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        147 SVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             HhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999987642      1233444


Q ss_pred             -----------------chhhHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH-HHHhcc-cccceeeccccccc
Q 021096           76 -----------------HFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMV-VFMLSP-LAIPVKMTLFPATK  136 (317)
Q Consensus        76 -----------------~f~~~~~~~v~l~~yl~~~~i~~~~~~~s~~~~~~~~~~~~-~ll~~p-~~i~~~~~~~~~~~  136 (317)
                                       +|..++.+++++++||++++++++|++++++.+..++++++ ++++.| +++|++.  .++..
T Consensus       227 ~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~  304 (591)
T PTZ00207        227 QRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKR  304 (591)
T ss_pred             HHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCC
Confidence                             88899999999999999999999999999999999999888 666677 6666644  33211


Q ss_pred             cccccCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCCchhHHHHHhccCcccccCCCCCCCCCCHHhhhhhhh
Q 021096          137 KRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKAD  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~~d~~~~~~~ll~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~~~d~t~~~~l~t~~  216 (317)
                      .+    ++       +|. +..+.  . +  .+.+. .   +++.+.      .+.+.++. +|++|+  |++|++++.|
T Consensus       305 ~~----~~-------~~~-~~~~~--~-~--~~~~~-~---~~~~~~------~~~~~~~~-~P~~~~--t~~q~l~~~d  354 (591)
T PTZ00207        305 PH----DD-------SDG-KAKEH--V-E--AGEEV-S---AAEDKV------VETDVDYI-APQFQE--TFIEGLKTAR  354 (591)
T ss_pred             cC----CC-------ccc-ccccc--c-c--ccccc-c---cccccc------ccccccCC-CCCCcc--hHHHHHhchh
Confidence            10    00       000 00000  0 0  00000 0   000000      00112222 388887  9999999999


Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHh-CC-Cch--hH-HHHHHHhhhcccccccchhhhhhhhhhh----HHH-HHH
Q 021096          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GV-NDT--TE-LLCLFSLCNFAGRLGSGVLSEHYVRSLL----LCS-YLR  286 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~-~~~--~~-~vsl~si~n~~GRl~~G~~SD~~~r~~~----~~r-~~~  286 (317)
                      ||++|+.++|+.|+|++++||++||++|+ |+ .+.  +. +|+++|+||++||+++|++| .+.||++    +|| ..+
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHH
Confidence            99999999999999999999999999999 77 333  33 89999999999999999998 7777766    899 555


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 021096          287 SIKLGRKCKCFLVLFEKFQ  305 (317)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~  305 (317)
                      .+... |+++|++++-...
T Consensus       434 ~~~~~-~~~~~lll~~~~p  451 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLTLP  451 (591)
T ss_pred             HHHHH-HHHHHHHHHHHCC
Confidence            66666 9999999966554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.96  E-value=2.5e-29  Score=231.32  Aligned_cols=127  Identities=44%  Similarity=0.792  Sum_probs=120.5

Q ss_pred             CccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhheeeeeecCCCC--CCCCCCCcchh
Q 021096            1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPAS--GEDSSEHGHFV   78 (317)
Q Consensus         1 v~nFP~~RG~vvgi~k~~~GLSaaIfs~i~~~ff~~d~~~fllfLa~~~~~v~~l~~~fir~~p~~~--~~~~~~~~~f~   78 (317)
                      +||||+|||+|+|++|+|+||||+||+++|+++|++|+++|++|+|++|.++++++++++|++|+++  +++++|+++|.
T Consensus       122 ~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~  201 (250)
T PF06813_consen  122 VRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFL  201 (250)
T ss_pred             HHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999743  44567888999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHhcccccce
Q 021096           79 FTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPV  127 (317)
Q Consensus        79 ~~~~~~v~l~~yl~~~~i~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~  127 (317)
                      ..+.+++++++|++++++++++++++++.++.++++++++|++|++||+
T Consensus       202 ~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~  250 (250)
T PF06813_consen  202 FFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV  250 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence            9999999999999999999999999999999999999999999999985

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.17  E-value=1.8e-05  Score=74.10  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=59.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      +.++.++++++|.+++.+++.......+.+....+.++++.++  .....++.++.+.+||+..|+++||++||+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  274 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS  274 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3467888899999998888776666666666666777777654  346788899999999999999999999876543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.00  E-value=2.9e-05  Score=78.82  Aligned_cols=95  Identities=22%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHH
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLR  286 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r~~~  286 (317)
                      ++.++++.||.+.+...+....-.+-.--+...+++.+++  +++.+++++++.|.+||++.|++.|+-..++.   ++.
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~  368 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLF  368 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHH
Confidence            6899999999998877777666666666777788888886  46789999999999999999999998873221   444


Q ss_pred             HHHHHHHHHHHHHHHHhhccce
Q 021096          287 SIKLGRKCKCFLVLFEKFQTTV  308 (317)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~  308 (317)
                      .+++...+++.+.+  .+.++.
T Consensus       369 ~~~ll~~gl~~~~~--p~~~~~  388 (509)
T KOG2504|consen  369 LLTLLIAGLARLFL--PFATTY  388 (509)
T ss_pred             HHHHHHHHHHHHHH--HHhccH
Confidence            45555555555443  555543

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.68  E-value=0.00058  Score=63.93  Aligned_cols=73  Identities=21%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~  279 (317)
                      +.++.++++++|.+++..++.......+......+.++ ++.+.  .....++..+++.+|++..|+++||++||+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56788999999999998888777777666666666654 46543  346778888999999999999999999985

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.43  E-value=0.00028  Score=70.51  Aligned_cols=74  Identities=23%  Similarity=0.303  Sum_probs=57.8

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      .+++.++++.+|++++.+++..+....+.+....+.+ ..|.+  ++..+.++..+++.+||+++|+++||++||+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~  320 (476)
T PLN00028        244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFG  320 (476)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence            4577889999999999887777766665555555544 45765  34568889999999999999999999998754

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.38  E-value=0.00091  Score=66.41  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      +.++++.+|.+++..+|..+.-..+..-.....+ .+|.+.  +....++..+++.+|++..|+++||++||+.
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            4789999999999887766554333333443443 456653  4567788889999999999999999998754

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.36  E-value=0.0023  Score=59.85  Aligned_cols=74  Identities=16%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      ..++.++++.+|.+.+..++.......+........ +.++.+.  .....++..+.+.+|+++.|+++||..+++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  284 (379)
T TIGR00881       208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR  284 (379)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc
Confidence            456788999999988877665554433333344444 3456653  3567788899999999999999998755443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.23  E-value=0.0038  Score=61.40  Aligned_cols=67  Identities=24%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             hhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhh
Q 021096          211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVR  277 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r  277 (317)
                      .++++.+|.+.+.+++....-..+..-...+. +..|.+.  +....+++.+++.+||++.|+++||+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~  308 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN  308 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc
Confidence            56788999987765553332211222233333 3456653  4567888999999999999999999943

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.20  E-value=0.004  Score=61.53  Aligned_cols=69  Identities=12%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhh
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~  278 (317)
                      ..+|++.+|.+++.+++....-.....-.....++ .+++  ......++.++++.+|++++|+++||++++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            36788999998888776654333334445555554 4555  334566788899999999999999999643

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.17  E-value=0.0053  Score=60.62  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=56.6

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .+++.++++.+|.+++..++.......+..-+..+.+ .+|.+.  .....++..+++.+|+++.|+++|++.+|+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~  330 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTL  330 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999887766655555555555544 456653  34567788899999999999999999876543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.11  E-value=0.0036  Score=62.18  Aligned_cols=67  Identities=13%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhh
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHY  275 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~  275 (317)
                      .+.++++.||.+.+..++...+-.........+.++++++  +..+..++.++++.++|+..|+++|+.
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3688899999887766554444344444556666777776  345788889999999999999999974

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.92  E-value=0.0092  Score=58.65  Aligned_cols=71  Identities=11%  Similarity=0.055  Sum_probs=49.8

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      +.++++.+|.+.+..++..+.-.........+.++ .|.+.  +.+..++.++.+.+|++..|+++||++++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  319 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR  319 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            46788999999877666543323334455555555 35543  4566788999999999999999999975543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.79  E-value=0.01  Score=58.02  Aligned_cols=70  Identities=14%  Similarity=0.081  Sum_probs=52.6

Q ss_pred             hhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh--CCC--chhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL--GVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al--~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      .++++.+|...++++|..+.-..+......+.+++  +.+  .+..+.++..+++.+||+..|+++||+++|+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       238 EIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            35568899998888876655444566777777775  333  23456788899999999999999999987653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.46  E-value=0.057  Score=53.09  Aligned_cols=72  Identities=13%  Similarity=-0.064  Sum_probs=48.7

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      .+.+++++||...+..++................+. +|++.  .........++..+|++..|+++||++||+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  323 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL  323 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence            467788888887666554433322233344445554 46553  3456777888999999999999999998754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00896 CynX cyanate transporter

Probab=96.43  E-value=0.0088  Score=56.64  Aligned_cols=72  Identities=18%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~  279 (317)
                      .++.+|++.+|.+.+.+++..+.-..+......+.++.|.+.  .....++..++..+||+..|+++||+++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       190 PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence            456788899998777666554444444555666777777653  356888999999999999999999995443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.15  E-value=0.012  Score=55.39  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ..++.++++++|.+.+.+++..+....+.+......++ ++.++  ...+.++..+.+.+||+..|+++||++||+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~  294 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL  294 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH
Confidence            45678899999999988888777665555556666654 46553  34577888899999999999999999987653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.02  E-value=0.025  Score=52.51  Aligned_cols=73  Identities=22%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHhCCC-ch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVN-DT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~~-~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      +++..+++.+|.+++.+++....-.........+ .+.++.+ ..  ....++.++.+.++++..|.++||+++++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR  275 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            4567777788855555544432222233333333 3455665 22  345788888889999999999999987654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.87  E-value=0.023  Score=56.08  Aligned_cols=74  Identities=27%  Similarity=0.334  Sum_probs=61.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      ..+...+++|-|.+-+.|+...|+=.-+.+-.++..++. |.++  +.....+....+.+-|...|++|||++.+|.
T Consensus       210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            456677899999999999999998777888888888765 5543  3478999999999999999999999987654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.026  Score=55.86  Aligned_cols=73  Identities=16%  Similarity=0.185  Sum_probs=47.5

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHH--HHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      -.++++-.|++-++.++.--.=. -|+.=+++.  |..+++  ++...++++=++...|-++.|++|||+-+.+..+-
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            35778888888776544221111 123333443  334555  45678999999999999999999999965444343

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.80  E-value=0.02  Score=55.55  Aligned_cols=73  Identities=23%  Similarity=0.284  Sum_probs=53.3

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .+.++++++|.+.+.+++....-....+-...+.+++|.+.  .....++.++++.+||+..|+++||++||+..
T Consensus       199 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~  273 (393)
T PRK09705        199 VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLL  273 (393)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence            45667888998877666554433334445666666666653  45688999999999999999999999987553

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.74  E-value=0.018  Score=56.07  Aligned_cols=74  Identities=12%  Similarity=0.072  Sum_probs=53.8

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +..++++||.+++.+++...+--.+..-.....+ ++|.+.  ..+..++..+...++++.+|.++||++||+.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~   81 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW   81 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            4667889999988777766533233333333333 367663  4578999999999999999999999999887544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.70  E-value=0.059  Score=54.76  Aligned_cols=94  Identities=14%  Similarity=0.078  Sum_probs=66.7

Q ss_pred             CCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ..++|+++++..|.+.+..+|....--..-+-+..+-.+ .++++  +..+...+.+++.+|=++.|++|||+... .-.
T Consensus       264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~-~~~  342 (495)
T KOG2533|consen  264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI-FAR  342 (495)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh-HHH
Confidence            367999999999999999998877766555666666666 33543  34577788899999999999999998611 122


Q ss_pred             H-HHHHHHHHHHHHHHHHH
Q 021096          283 S-YLRSIKLGRKCKCFLVL  300 (317)
Q Consensus       283 r-~~~~~~~~~~~~~~~~~  300 (317)
                      | .+...+.+.+.+++..+
T Consensus       343 ~~~~~~~~~~~~~~g~~~l  361 (495)
T KOG2533|consen  343 RLLFIVFLCLYAIIGAISL  361 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            2 34444555666675555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.64  E-value=0.027  Score=54.33  Aligned_cols=70  Identities=16%  Similarity=0.122  Sum_probs=49.9

Q ss_pred             hhhHHHHHHHHHHhhcc-hhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          214 KADFWLLWFVYFLGVGA-GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~-Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +++||.+....++..++ +.....-...+.+.+|.+.  ..+.+++.++...++++.+|+++||++||+.+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~   73 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW   73 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            47899987655554443 4443322233344567763  4568999999999999999999999999987655

>TIGR00897 2A0118 polyol permease family

Probab=95.23  E-value=0.052  Score=52.61  Aligned_cols=74  Identities=12%  Similarity=0.028  Sum_probs=52.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      +++.++++.+|.+.+..++....-.....-...+.+++|.+.  .....++..+++.+|++..|+++||++||+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            346788899998887766654433333334444556667653  33566778899999999999999999987653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=95.16  E-value=0.039  Score=51.92  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .||..++.+++......++..-..+ +.++++.++  ..+..++..+...++.+.+|.++||++||+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            5888888888776666665555554 777888864  3567889999999999999999999999876544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.03  E-value=0.95  Score=45.38  Aligned_cols=72  Identities=11%  Similarity=-0.069  Sum_probs=44.6

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      .+.+|++.|+...+..++...+-...........|. .|++  ++.......+++..+|.+..|.+.||+++|+.
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~  327 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV  327 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            456677777766665544333211112222333333 4655  34456677888999999999999999998653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=94.98  E-value=0.032  Score=54.24  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHhhcch---hheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAG---VTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~G---l~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ++|.++...++....+   .+....+.++.+++|.+.  ....+++..+...++++..|.++||++||+.+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~   90 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVIL   90 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence            4444555554433333   334446777888888764  4568889999999999999999999999976544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.84  E-value=0.5  Score=47.92  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             CCCCHHhhhhhh----hHHHHHHHHHHhhcchhheec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhh
Q 021096          204 EDFKLGEAFVKA----DFWLLWFVYFLGVGAGVTVLN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV  276 (317)
Q Consensus       204 ~d~t~~~~l~t~----~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~  276 (317)
                      ++.+++|.++++    ..++.....++..-+|...++ ....|-++.|.+.  +.......++.|....+.+.++-||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            356888888863    456666677777888877554 4555667777763  345666788899999999999999999


Q ss_pred             hhhh
Q 021096          277 RSLL  280 (317)
Q Consensus       277 r~~~  280 (317)
                      ||.-
T Consensus       334 RRpL  337 (485)
T KOG0569|consen  334 RRPL  337 (485)
T ss_pred             CcHH
Confidence            8753

>PRK03633 putative MFS family transporter protein; Provisional

Probab=94.77  E-value=0.074  Score=51.05  Aligned_cols=70  Identities=10%  Similarity=-0.031  Sum_probs=52.0

Q ss_pred             hhhhHHHHHHHHHHhhcchhh-eecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          213 VKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++++|++++..++.. .+.. +..-+..+.++++.++  ..+..+...+++.++.+.+|.++||++||+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~   76 (381)
T PRK03633          4 YTRPVLLLLCGLLLLT-LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYL   76 (381)
T ss_pred             HHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3567888887665533 3333 3345666777777763  4578889999999999999999999999887555

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=94.48  E-value=0.47  Score=47.56  Aligned_cols=30  Identities=13%  Similarity=-0.015  Sum_probs=22.9

Q ss_pred             HHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          254 LCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       254 vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..+..+++..|.++.|+++||++||+.+..
T Consensus       341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~  370 (502)
T TIGR00887       341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence            344455677799999999999999876544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03545 putative arabinose transporter; Provisional

Probab=94.33  E-value=0.09  Score=50.55  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~  279 (317)
                      .++.+|++.+|..++..++.........+....+.++ .|.+.  .....+++++.+.+|++..|.++||.+||.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        198 LPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            4678899999887776655444443333334444454 45543  456778899999999999999999998764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=94.19  E-value=0.17  Score=47.50  Aligned_cols=75  Identities=21%  Similarity=0.136  Sum_probs=49.6

Q ss_pred             CHHhhhhhhh--HHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKAD--FWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~--Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      +.++.+++..  +|...+..++..............+. +.++.++  .....++..+.+.++++..|+++||++||+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  288 (394)
T TIGR00883       209 PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVL  288 (394)
T ss_pred             CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            3456666655  77666665554444333344455555 3455543  34567788899999999999999999988653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.16  E-value=0.072  Score=52.13  Aligned_cols=54  Identities=13%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             chhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          230 AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       230 ~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.-++.-.+.+|.++++.+.  ....++++.++.++|.+.+|.++||++||+.+..
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~   86 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLIT   86 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHH
Confidence            44456667778888888763  4568899999999999999999999999976443

>PRK10504 putative transporter; Provisional

Probab=94.01  E-value=0.13  Score=50.70  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      +.+|++++.+++......++......+.+++|.+..  ...++...+...++.+.+|.++|+++||+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            468999888887666555666678888888888743  45667778888999999999999999986543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=93.85  E-value=0.16  Score=48.81  Aligned_cols=67  Identities=18%  Similarity=0.236  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .|++.+...++.....++.....++.++++.+.  .....++..+...++.+.+|.++||++||+.+..
T Consensus        10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~   78 (394)
T PRK11652         10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILV   78 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            344444555555544555666778888888864  3567889999999999999999999999876544

>PRK03699 putative transporter; Provisional

Probab=93.79  E-value=0.14  Score=49.47  Aligned_cols=68  Identities=15%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHH-HhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      +.+|++.+.+++.......+.+-...+.+ .+|.+  +.....+++.+++.+||+..|+++||+++|+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT  275 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence            46788777776655443334444555664 45665  3456788899999999999999999999876543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.70  E-value=0.19  Score=47.43  Aligned_cols=69  Identities=28%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHhhcchh-heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          215 ADFWLLWFVYFLGVGAGV-TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl-~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..++.....+.+..+.+. ++......+.+++|.++  .....++..+++.++.+.+|.++||++||+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   75 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL   75 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            344444444444444443 34445667788888864  3567889999999999999999999999876444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=93.69  E-value=0.17  Score=48.64  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      .+.+++..+|.++...+++...-....+......+ ..|.++  ...+.++.++++.+||+..|+++||+++++...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAA  269 (382)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHH
Confidence            34677888898877666544322222222333333 356653  456788999999999999999999999876543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=93.36  E-value=0.18  Score=49.49  Aligned_cols=74  Identities=15%  Similarity=0.024  Sum_probs=53.9

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--c--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--D--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ..+.+|++.+|...+..++..|......+++....++.+..  +  +..+.++.-..-.+||+++|++.||+++|+.+
T Consensus       225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l  302 (410)
T TIGR00885       225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL  302 (410)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            35678888999988888888888766667777777665322  2  13345555567789999999999999887653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=93.32  E-value=0.18  Score=53.83  Aligned_cols=72  Identities=25%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             hhhhhHHHHHHHHHHhhcch---hheecc-hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          212 FVKADFWLLWFVYFLGVGAG---VTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       212 l~t~~Fw~l~~~~~~~~g~G---l~~i~n-~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      -.++..|.+++.+.++....   ...++. +..+.++++.+.  ..++.++..++..+|.+++|+++|++|||+.+..
T Consensus       160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii  237 (742)
T TIGR01299       160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI  237 (742)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34566676665544433222   122222 233445666653  3567888999999999999999999999977554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12307 putative sialic acid transporter; Provisional

Probab=93.27  E-value=0.21  Score=48.34  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=52.0

Q ss_pred             CHHhhhhhhhHHHHHHHHH---HhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYF---LGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~---~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .+++.++++.+|.....+.   +..+....+.+......++.|++.  .....++..+++.+|++.+|+++||++||+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~  299 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF  299 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            4678888888886554332   222322233445555666666653  34567788899999999999999999988654


Q ss_pred             HH
Q 021096          282 CS  283 (317)
Q Consensus       282 ~r  283 (317)
                      ..
T Consensus       300 ~~  301 (426)
T PRK12307        300 SI  301 (426)
T ss_pred             HH
Confidence            33

>TIGR01272 gluP glucose/galactose transporter

Probab=93.20  E-value=0.25  Score=46.63  Aligned_cols=73  Identities=19%  Similarity=0.137  Sum_probs=57.3

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH---hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ..++++.+|+..+.+++-.|+...+.+......++   ++.+  ......+.+..+-.+||++.+.++||+++++.+.
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~  212 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA  212 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            46778899999999999998887766666665543   3554  3467889999999999999999999999776543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03699 putative transporter; Provisional

Probab=93.17  E-value=0.2  Score=48.35  Aligned_cols=69  Identities=10%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +-+|..++.+++..+.-.+.-....++.++++.+.  .....++..++..+|.+..|.++||++||+.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~   77 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIF   77 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34666666666655554444445677888888764  3567888899999999999999999999976544

>PRK12382 putative transporter; Provisional

Probab=93.15  E-value=0.19  Score=48.21  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchH-HHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +...+..+|.+++..++..-+.-+...-+. .+.+++|.+.  ..+.+++..+...++.+.+|.++||++||+.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (392)
T PRK12382         10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ   86 (392)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence            345556777776655444332222222233 2456777763  4578899999999999999999999999887554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=93.12  E-value=0.21  Score=49.48  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhhcchhheecc----hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNN----LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n----~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+|..|...+++...-.+.-+|    ...+.++++.++  ..+..+.+.+..+++.+..|+++||+++|+.+..
T Consensus        26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   99 (467)
T PRK09556         26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF   99 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence            4666666555544433222222    445667777764  3567888999999999999999999999987655

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=93.06  E-value=0.27  Score=47.01  Aligned_cols=70  Identities=21%  Similarity=0.186  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch-------hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-------TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~-------~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +++++.+|+..++..-+.-++.--+..+.+++|.++.       ....++..+...++.+.+|.++||++||+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   89 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR   89 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence            3467777776655433333444456777778777532       345677788899999999999999999877555

>TIGR00900 2A0121 H+ Antiporter protein

Probab=93.04  E-value=0.13  Score=47.68  Aligned_cols=67  Identities=15%  Similarity=0.036  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ||.++...++.....-+.......+..+++.++  ..+..++..+...++.+.+|.++||++||+.+..
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~   69 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIG   69 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHH
Confidence            354554444433333333333444555666553  3567888889999999999999999999876444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.00  E-value=0.23  Score=46.85  Aligned_cols=75  Identities=16%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      .++.++++.+|.+.+.+.+..+...........+.+ .++.++  .....+...+...+|++..|+++||+++|+.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            456778888888776655544433333333344444 456553  345677788899999999999999999876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=92.97  E-value=0.22  Score=50.16  Aligned_cols=74  Identities=15%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ..+.+|+++-|++-+.++|..|.=.-..+-.....++ .+++.  .....+.++...++|.+.|+++||+++++...
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~  320 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTL  320 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHH
Confidence            4678999999999998888776543333344444444 22222  22345567889999999999999999886543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=92.86  E-value=0.19  Score=48.31  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.+|.+.+..++......++..-+..+.+++|.+.  ....++...+++.+|.+..|.++||++||+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            45677766655555555566666777888888763  4578999999999999999999999999876544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=92.82  E-value=0.27  Score=47.38  Aligned_cols=69  Identities=10%  Similarity=-0.002  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHhhc----chhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          215 ADFWLLWFVYFLGVG----AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g----~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++|++.+.+.+...    ..-++.-...++.++++.+.  .....+...+...++.+..|.++||++||+.+..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~   83 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLA   83 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            456666655544443    23334445667788888764  3467788999999999999999999999876444

>PRK09528 lacY galactoside permease; Reviewed

Probab=92.79  E-value=0.35  Score=47.03  Aligned_cols=74  Identities=7%  Similarity=-0.106  Sum_probs=44.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh----CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al----~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .++.+|++.+|.+.+.+.+....-.+..........+.    +.+.  .....++..+.+.+|.+.+|+++||+++|+.+
T Consensus       216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~  295 (420)
T PRK09528        216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNAL  295 (420)
T ss_pred             HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh
Confidence            34577788888766544333322212222222322222    2221  23566777888999999999999999998753

>PRK10133 L-fucose transporter; Provisional

Probab=92.65  E-value=0.23  Score=49.18  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++.+++++||...+..++..+.-....+-.... .+ .+|.++  .....+...++..+||+..|.+.||+++|+....
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~  330 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            3567889999987766655554432222222222 23 346553  4567889999999999999999999998876433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=92.62  E-value=0.33  Score=46.64  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      .|.++..+++....-..+.+....+.++.|.++  .....++.++++.+|++..|+++||++||+.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344444444443333344445666677777653  456778888999999999999999999876543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=92.61  E-value=0.38  Score=46.07  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=47.6

Q ss_pred             CHHhhhhhhhHHHHHHHHHH-hhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          207 KLGEAFVKADFWLLWFVYFL-GVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~-~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      +.++.++++.+|.....+++ +...+..+ +-+....+..|.+.  ....+++..+++.+||+..|+++||+++|+.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~  269 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSLY-GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLR  269 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHH
Confidence            34667888888865442222 11112111 22344445556653  346788888999999999999999999886543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=92.53  E-value=0.21  Score=50.38  Aligned_cols=97  Identities=21%  Similarity=0.240  Sum_probs=67.3

Q ss_pred             CCCCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhh--
Q 021096          204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRS--  278 (317)
Q Consensus       204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~--  278 (317)
                      .+..++++++++.+|.+|+..++..-+=.++....... -+-++++  +...+.++=-+...+-++++|.++|++.+|  
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            46688999999999999998877554443333333333 3346775  456777888888999999999999999885  


Q ss_pred             -hhHHH-HHHHHHHHHHHHHHHHH
Q 021096          279 -LLLCS-YLRSIKLGRKCKCFLVL  300 (317)
Q Consensus       279 -~~~~r-~~~~~~~~~~~~~~~~~  300 (317)
                       .+..| .+-+++.+..+++.+++
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l  350 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVL  350 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHee
Confidence             11233 55566666666665555

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=92.49  E-value=0.25  Score=47.94  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +++||.+++..++..-...++...+..+.++++.++  ....++...+...++-+..|.++||++||+.+-.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~   73 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFI   73 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHH
Confidence            458999988877755444344444555667777654  3456778888899999999999999999987544

>PRK03893 putative sialic acid transporter; Provisional

Probab=92.43  E-value=0.3  Score=48.34  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++.+++.+++..-...+.......+.++++.+.  ....+++..+...+|.+..|.++||++||+.+..
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            4555555554433333333334566777787764  4568888899999999999999999999876444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=92.38  E-value=1.2  Score=42.16  Aligned_cols=41  Identities=15%  Similarity=0.239  Sum_probs=31.9

Q ss_pred             HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       243 ~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.+|.+.  .....++..++..+|++..|+++||++||+.+..
T Consensus       267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~  309 (405)
T TIGR00891       267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVC  309 (405)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHH
Confidence            3456653  3457788899999999999999999999876443

>PRK10054 putative transporter; Provisional

Probab=92.36  E-value=0.28  Score=47.65  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +++|.+.+..++....--++..=+.. +.+.+|.+.  ..+.+++..+...++++..|.++||++||+.+..
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~   78 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL   78 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence            36888888666654333333333333 345577764  4567788888899999999999999999875433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.34  E-value=0.39  Score=46.15  Aligned_cols=74  Identities=15%  Similarity=-0.081  Sum_probs=52.3

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      +.++.+|+++||.+.+..++..++-..+........+++|.++.  ....++..+...++.+.+|.+.||+++|+.
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~  272 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL  272 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence            45789999999999888877666655666677776777777643  345556666677777777766677666543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=92.34  E-value=0.23  Score=46.29  Aligned_cols=47  Identities=13%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      -...+.++++.++  .....++..++..++.+.+|.++||++||+.+..
T Consensus        25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~   73 (377)
T TIGR00890        25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML   73 (377)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH
Confidence            3456667777764  4578899999999999999999999999987544

>PRK03545 putative arabinose transporter; Provisional

Probab=92.11  E-value=0.22  Score=47.83  Aligned_cols=46  Identities=17%  Similarity=0.194  Sum_probs=37.6

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..++.++++.+.  ....+++..+...++.+.+|.++||++||+.+..
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   79 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIG   79 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            578888888764  3567888888899999999999999999976444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=92.00  E-value=0.27  Score=48.08  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=33.6

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.++++.++  ..+..+++.++.++|.+..|+++||++||+.+..
T Consensus        34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332        34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            345556553  3568889999999999999999999999876443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=91.92  E-value=0.37  Score=48.34  Aligned_cols=68  Identities=13%  Similarity=0.058  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHH---hCCC--chhHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~-~~r~~~~~r  283 (317)
                      .+|.++...++-..+-..+..++....++   +|.+  ++...++.+++.+.++.+.+|+++|| ++||+.+..
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            46777766666333333344455555544   5665  34678899999999999999999999 799887544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=91.77  E-value=0.38  Score=50.03  Aligned_cols=69  Identities=19%  Similarity=0.189  Sum_probs=47.9

Q ss_pred             hhhhHHHHHHHHHHhhcch---hhee-cchHHHHHHhCCCc-hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          213 VKADFWLLWFVYFLGVGAG---VTVL-NNLAQIGVALGVND-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~G---l~~i-~n~~~i~~al~~~~-~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      +++.|+..+..+.+..-+.   +..- +-+.+|.+++|.++ .+++++..++.++.+-...|-+||.+|||+-.
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~  111 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFF  111 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Confidence            4456666665444433322   2222 22578899998864 45777888899999999999999999998653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00889 2A0110 nucleoside transporter

Probab=91.70  E-value=0.23  Score=48.74  Aligned_cols=76  Identities=9%  Similarity=-0.049  Sum_probs=50.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCC----------chhHHHHHHHhhhcccccccchhhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN----------DTTELLCLFSLCNFAGRLGSGVLSEHYVR  277 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~----------~~~~~vsl~si~n~~GRl~~G~~SD~~~r  277 (317)
                      ..+.+|++.||.+++..++..+.-..+........++.|++          ......++.++....+++..|.++||+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            45688899999888776665332211112222223344432          23567888888999999999999999999


Q ss_pred             hhhHHH
Q 021096          278 SLLLCS  283 (317)
Q Consensus       278 ~~~~~r  283 (317)
                      |+.+..
T Consensus       281 r~~l~~  286 (418)
T TIGR00889       281 KKVMLL  286 (418)
T ss_pred             HHHHHH
Confidence            876433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00897 2A0118 polyol permease family

Probab=91.52  E-value=0.41  Score=46.38  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=48.8

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +...|.+...+.+..+.+.. .+-...+.++++.++  ..+.+++..++..++.+..|.+.||++||+.+..
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~   83 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLE-QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI   83 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhH-HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            33445444555555555533 334455667887763  4568899999999999999999999999887554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11663 regulatory protein UhpC; Provisional

Probab=91.50  E-value=0.46  Score=46.60  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      -+|.+++.+++.......+-..+.++.+++|.+.  ..+..++..+...++++..|+++||++||+.+..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~   93 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGI   93 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHH
Confidence            3344444444433322233334566777777763  3567888999999999999999999999876444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=91.44  E-value=0.36  Score=44.27  Aligned_cols=66  Identities=26%  Similarity=0.318  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      |.+....++......+.......+.++++.+.  .....++..+.+.++.+.+|.++||++||+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~   69 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLL   69 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHH
Confidence            44444444333333333344555566666653  3567888889999999999999999999875433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=91.38  E-value=0.64  Score=43.67  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      +.++++++|.++...++..+....+........ +.+|.++.  ....++..+.+..+++..|.++||++||+.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~  268 (375)
T TIGR00899       194 GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLM  268 (375)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHH
Confidence            456777888877766555543333333333333 44566532  3455566667788999999999999988653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=91.24  E-value=0.67  Score=45.38  Aligned_cols=75  Identities=8%  Similarity=0.037  Sum_probs=49.6

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhh-eecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ++++.++++.+|.+.+.+.+....+.. +..-..++. +.+|.+.  .....++..+...++....|+++||++||+..
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~  312 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM  312 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            467888899999877665554333322 223344444 3456653  34566677778888999999999999988653

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=91.07  E-value=0.59  Score=44.74  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ++.++++.+|...+...+.......+.+-...+. +.+|.++  .....++.++.+.+|++..|+++||++||+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~  273 (392)
T PRK10473        197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML  273 (392)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4677888888776665554444333333222333 3456653  345677888899999999999999999876543

>TIGR00895 2A0115 benzoate transport

Probab=91.00  E-value=0.58  Score=43.95  Aligned_cols=64  Identities=23%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhh
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRS  278 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~  278 (317)
                      +.+|.+++.+++.......+.+....+.+.++.+.  .....++.++++.+|++..|+++||++||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            34555555554443333223333345555666653  35678888999999999999999999987

>TIGR00901 2A0125 AmpG-related permease

Probab=90.99  E-value=0.57  Score=44.15  Aligned_cols=76  Identities=14%  Similarity=0.095  Sum_probs=45.9

Q ss_pred             HHhhhhhhh---HHHHHHHHHHhhcchhheecchHHHHHHhCCCchh--HHHHHHH-hhhcccccccchhhhhhhhhhhH
Q 021096          208 LGEAFVKAD---FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTT--ELLCLFS-LCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~---Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~--~~vsl~s-i~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      +++.++++.   +|.+.+..++...+............+++|.+...  ...++.+ +...+|.+++|+++||++||+.+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            345555554   66666555444333223334445555667766432  3444444 56789999999999999988774


Q ss_pred             HH
Q 021096          282 CS  283 (317)
Q Consensus       282 ~r  283 (317)
                      ..
T Consensus       279 ~~  280 (356)
T TIGR00901       279 LL  280 (356)
T ss_pred             HH
Confidence            43

>PRK10489 enterobactin exporter EntS; Provisional

Probab=90.94  E-value=0.29  Score=47.46  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=48.1

Q ss_pred             hhhhhhHHHHHHHHHH-hhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          211 AFVKADFWLLWFVYFL-GVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~-~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..++++|+.+++..++ ..+.+.. .--...+.++++.+.  ..+..+...+...++.+..|.++||++||+.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         13 LKTHPAFRAVFIARFISIFGLGLL-GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            3457788877765433 3333333 223344556666553  3567888899999999999999999999876443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=90.94  E-value=0.86  Score=45.96  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ++.+|+-++.+..+...=.+.---..++.+ +++.+.  ..+++++..+..+++|+..|.+.||+|.|+....
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            346777776665544333322222333444 566653  4568889999999999999999999998876444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=90.89  E-value=0.6  Score=44.83  Aligned_cols=47  Identities=21%  Similarity=0.127  Sum_probs=35.1

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      -...+.+..|++.  ......+..+++.+|+++.|+++||++||+.+..
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  354 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI  354 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3444556667654  3457778889999999999999999998876443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=90.70  E-value=0.63  Score=42.65  Aligned_cols=65  Identities=28%  Similarity=0.289  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~  279 (317)
                      +.+|.+++..++.......+......+.++. +.++  .....++..+.+.+|++.+|.++||++||+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  242 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR  242 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6777777777777666666666666676665 5543  346778888999999999999999999987

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00891 2A0112 putative sialic acid transporter

Probab=90.67  E-value=0.62  Score=44.06  Aligned_cols=47  Identities=21%  Similarity=0.387  Sum_probs=36.9

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ...++.++++.++  .....++..++..++-+..|.++||++||+.+..
T Consensus        34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3345666777763  3567888999999999999999999999876544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=90.51  E-value=0.75  Score=42.63  Aligned_cols=74  Identities=19%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .++.++++.+|.+.+..++..........+..+. .+. ++.++  .....++.++++.+|++..|.++|+.+|++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM  280 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            4667888899988877666555554444233333 333 45553  34567778889999999999999998877543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=90.51  E-value=0.63  Score=43.99  Aligned_cols=76  Identities=9%  Similarity=-0.036  Sum_probs=50.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++.++++.+|...+..++..+.-..+........+ ..|.+.  .....++.++...+|++..|++.||++||+.+..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  265 (377)
T PRK11102        187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF  265 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            345677778887666555444333333333333443 346553  3467788889999999999999999998876443

>PRK15075 citrate-proton symporter; Provisional

Probab=90.41  E-value=0.85  Score=44.68  Aligned_cols=69  Identities=13%  Similarity=0.062  Sum_probs=42.8

Q ss_pred             hhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          212 FVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      .+++..|.+.....+....+...+.+ ...+.+. +|.+.  ......+.++++.+|++..|+++||++||+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~  306 (434)
T PRK15075        234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV  306 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            44455555433333333333333333 5555554 56653  2345667888999999999999999998764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=90.24  E-value=0.6  Score=46.65  Aligned_cols=46  Identities=15%  Similarity=0.037  Sum_probs=34.9

Q ss_pred             hHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          238 LAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ...+.+++|.+..  ....+...++..+|.+..|+++||++||+.+..
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~  106 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF  106 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3456677777643  345667778889999999999999999876555

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=90.22  E-value=0.74  Score=44.17  Aligned_cols=74  Identities=15%  Similarity=0.005  Sum_probs=48.3

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      ++++.+|++.+|.+.+..++....-..+.+......++.|.++  ...+.++..+.+..+++..|.+.||+++++.
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  272 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL  272 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            5688999999998877655544332223333344446667653  3445566667778888888888888777665

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=89.91  E-value=0.94  Score=43.83  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=46.6

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch-hHHHHHHHhhhcccccccchhhhhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~-~~~vsl~si~n~~GRl~~G~~SD~~~r~~  279 (317)
                      +++.++++++|.+++.++|..+.-..+.+=+.++.++.|++.. ....++..   ..|-+..|+++|++.|++
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~---~~g~~g~~~~~d~~~r~~  254 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAI---LAGLIGVAVIPDRVARAG  254 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHHHHHhhHHhhhhh
Confidence            5688999999999998888766655554446677776666532 22333333   344455699999998753

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=89.84  E-value=0.5  Score=43.98  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=36.1

Q ss_pred             HHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       239 ~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..+.+++|.+.  .....++..+...++.+..|+++||++||+.+..
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   65 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI   65 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence            45566777763  4568889999999999999999999999876444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=89.73  E-value=0.69  Score=44.29  Aligned_cols=88  Identities=16%  Similarity=0.056  Sum_probs=53.6

Q ss_pred             hhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHH
Q 021096          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKL  290 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r~~~~~~~  290 (317)
                      .+.||+++++++|---+=.-.|.--....+ .+|.+.  +...-|.+-.-++.---.+|.++|+.|++.+    ....+.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~----wv~~a~  338 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW----WVASAC  338 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh----hHHHHH
Confidence            368999999888765444444433222333 346653  2223333334455556678999999999865    334455


Q ss_pred             HHHHHHHHHHHHhhc
Q 021096          291 GRKCKCFLVLFEKFQ  305 (317)
Q Consensus       291 ~~~~~~~~~~~~~~~  305 (317)
                      .++..+|..||-+|-
T Consensus       339 ~~tl~~H~~l~Ft~l  353 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTFL  353 (459)
T ss_pred             HHHHHHhhhHHhhhc
Confidence            667789988855543

>TIGR00898 2A0119 cation transport protein

Probab=89.67  E-value=0.67  Score=46.05  Aligned_cols=77  Identities=13%  Similarity=0.044  Sum_probs=47.6

Q ss_pred             CCHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+.++.++++.+|...+...+.+.......+......+.++.+ ......+.++....|+++.|+++||++||+.+..
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~  390 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA  390 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4788999999998887766554443222211111111222222 2233446677788899999999999999865433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=89.65  E-value=0.49  Score=43.72  Aligned_cols=42  Identities=24%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             HHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          240 QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       240 ~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .+.++++.+.  ..+..++..+.+.++.+..|.++||++||+.+
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l   65 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVL   65 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE
Confidence            5666777653  45788889999999999999999999988753

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=89.61  E-value=0.88  Score=43.85  Aligned_cols=76  Identities=12%  Similarity=-0.129  Sum_probs=48.0

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++.++++.+|.+.+.+++..............+. +.++.++.  ........++..+|++..|.++||+++|+....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~  286 (406)
T PRK15402        208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRM  286 (406)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            35678888999887766554433222222233333 34566532  233445566788999999999999998765433

>PRK11043 putative transporter; Provisional

Probab=89.59  E-value=0.98  Score=43.36  Aligned_cols=75  Identities=11%  Similarity=0.057  Sum_probs=47.7

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ++++.++++++|...+.+.+..+.-..+.+-...+.++.|++..  ........++..+|++..+.+.||+++++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~  271 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL  271 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            45678888899877666555443333333333444555666532  3344455677788899999999999877643

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=89.05  E-value=0.81  Score=50.32  Aligned_cols=75  Identities=15%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecchH-HHHHHhCCCc----hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND----TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~al~~~~----~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+.+++.+|+.+++..++..-...++..-+. .+...++.+.    .++..+++.+...++.+.+|+++|+++||+.+..
T Consensus         3 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~   82 (1146)
T PRK08633          3 KNLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRI   82 (1146)
T ss_pred             cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHH
Confidence            3568888999998877775433322222121 2222333332    2456677888899999999999999999976554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=88.95  E-value=0.93  Score=43.44  Aligned_cols=61  Identities=11%  Similarity=0.106  Sum_probs=42.1

Q ss_pred             HHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          223 VYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       223 ~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+....+.|+....--.++.+++|.++  ..+..++..+...++.+..|.++||++||+.+..
T Consensus        24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (399)
T PRK05122         24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF   86 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence            333344444432222233556777664  3567888999999999999999999999988666

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=88.62  E-value=1.6  Score=43.11  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      +..+.+|++.-|..+++.++..+...+...-++++-++. |.+.  .+...-+++++..+|-++.|.++|| +.++.
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~  278 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA  278 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence            458899999999999999999999999888888988876 4443  3566778999999999999999999 55444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=88.55  E-value=1.1  Score=45.23  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             hhhhhh-hHHHHHHHHHHhhcchhheecchHHHH-HHhCCCch--hHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021096          210 EAFVKA-DFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~-~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~-~~r~~~~~r  283 (317)
                      +.++.+ .+|.++...++...+--.+...+.... +++|.++.  ...++..........+.+|+++|| ++||+.+..
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~   93 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML   93 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            344554 589888877765544323333333333 56777643  334444444444445688999999 599876544

>PRK12307 putative sialic acid transporter; Provisional

Probab=88.53  E-value=1.1  Score=43.17  Aligned_cols=47  Identities=21%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ....|.++++.++  .....++..++..+|.+.+|.++||++||+.+..
T Consensus        40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3445556777764  3567888899999999999999999999877555

>PRK11043 putative transporter; Provisional

Probab=88.50  E-value=0.9  Score=43.63  Aligned_cols=51  Identities=27%  Similarity=0.280  Sum_probs=40.5

Q ss_pred             heecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       233 ~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ++.-...++.++++.++  .....++..+...+|.+.+|.++||++||+.+..
T Consensus        24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   76 (401)
T PRK11043         24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLA   76 (401)
T ss_pred             HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHH
Confidence            34445667778887764  3568889999999999999999999999877544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=88.44  E-value=0.59  Score=45.87  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=38.2

Q ss_pred             cchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       236 ~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .....+.+++|.+.  .....+...+++.++.+..|.++||++||+.+..
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   72 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLI   72 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHH
Confidence            34566777887753  4578889999999999999999999999876433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=88.32  E-value=1  Score=43.12  Aligned_cols=77  Identities=16%  Similarity=-0.026  Sum_probs=50.9

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHhCCCch--hHHHHHHH-hhhcccccccchhhhhhhhhhhHHH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~~--~~~vsl~s-i~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.++.+|++.+|.+....++...+......-.....+++|++..  .....+.. +...+|.+..|.+.||+++++....
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~  279 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFIL  279 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45788888888887776665544333333334455667777643  34444444 4667889999999999998866443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=88.24  E-value=0.97  Score=43.24  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             heecchHHHHHHhCCCch--hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          233 TVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       233 ~~i~n~~~i~~al~~~~~--~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ++...+.++.++++.++.  ....++..+...++.+..|+++||++||+.+-.
T Consensus        21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~   73 (392)
T PRK10473         21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIP   73 (392)
T ss_pred             HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHH
Confidence            445567788888888643  457788888999999999999999999865433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=87.96  E-value=1.8  Score=42.67  Aligned_cols=38  Identities=16%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          246 GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       246 ~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.+.  ..+..+...++..+|.+.+|+++||++||+.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~   98 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   98 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHH
Confidence            5543  3567889999999999999999999999876544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=87.85  E-value=1.2  Score=44.12  Aligned_cols=46  Identities=11%  Similarity=0.122  Sum_probs=35.3

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..++.++++.+.  .....++..+...++...+|+++||++||+.+-.
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~   89 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIA   89 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHh
Confidence            556667777753  3566777778888999999999999999876444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=87.37  E-value=1.3  Score=43.09  Aligned_cols=43  Identities=12%  Similarity=0.096  Sum_probs=31.9

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.+.+|.+.  ..+..++..+...+.++..|.++||++||+.+..
T Consensus        37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~   81 (400)
T PRK11646         37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVT   81 (400)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHH
Confidence            345667663  3456777778888889999999999999876444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=87.27  E-value=2  Score=41.15  Aligned_cols=40  Identities=23%  Similarity=0.140  Sum_probs=30.5

Q ss_pred             HHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          242 GVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       242 ~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .++.+........+++.++..+||+..|.++||+++|+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  282 (399)
T PRK05122        243 YAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVA  282 (399)
T ss_pred             HHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3444544445667788899999999999999999887543

>TIGR00895 2A0115 benzoate transport

Probab=87.18  E-value=1.4  Score=41.29  Aligned_cols=47  Identities=19%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          237 NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ....+.+.++.+.  .....++..++..+|.+..|.++||++||+.+..
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   87 (398)
T TIGR00895        39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLW   87 (398)
T ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence            3455666677653  3457778888999999999999999998876544

>PRK10133 L-fucose transporter; Provisional

Probab=86.51  E-value=1.5  Score=43.45  Aligned_cols=68  Identities=19%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .|+.++++++...-.-.+...-..++.++++.++  ..+..+.+.++..++-+..|.++||++||+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~   96 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            5666666665433333333444556666777764  3567888999999999999999999999976544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=86.13  E-value=2.2  Score=41.30  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV  276 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~  276 (317)
                      .++.++++.+|.+.+..++..+..........+ +.+.+|.+.  .....+..++++.+|++..|.+.||..
T Consensus       209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        209 TFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            467889999999877655544433222233333 344567653  345677788889999998888888843

>TIGR00893 2A0114 d-galactonate transporter

Probab=85.60  E-value=0.69  Score=43.03  Aligned_cols=46  Identities=17%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ...+.+++|.++  .....++..+++.++.+..|.++||++||+.+..
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   64 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV   64 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHH
Confidence            344556677653  3578889999999999999999999999877544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=85.50  E-value=2  Score=42.43  Aligned_cols=80  Identities=19%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHhhcchhheecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 021096          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRK  293 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r~~~~~~~~~~  293 (317)
                      ..|.+-+.-|+...+..+..+-+.+|+++++.+.  +-..+|+.+.+-.+|-.....+.||+.||+-     +...+.+.
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-----Ll~~l~lF   88 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-----LLGLLALF   88 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-----HHHHHHHH
Confidence            4577777778888888999999999999999974  3579999999999999999999999999864     33444445


Q ss_pred             HHHHHHH
Q 021096          294 CKCFLVL  300 (317)
Q Consensus       294 ~~~~~~~  300 (317)
                      .++|++-
T Consensus        89 i~~n~l~   95 (394)
T COG2814          89 IVSNLLS   95 (394)
T ss_pred             HHHHHHH
Confidence            5666554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=85.28  E-value=1.4  Score=41.69  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=39.6

Q ss_pred             eecchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          234 VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       234 ~i~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.-....+.++++.++  .....++..++..+|++..|.++||++||+.+..
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~   61 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILG   61 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHH
Confidence            4455667788888763  3567889999999999999999999998776443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=85.27  E-value=2.3  Score=41.53  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=54.2

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHHh-CCCc-hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND-TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~~-~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+++..++++|+.++...++...+-.+.........+.. +.++ .+.+..+..+.+.++-+++++++||++||+.+.-
T Consensus       217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            467888899999988888876444443333444444543 4432 3456667788899999999999999999887544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=84.87  E-value=1.4  Score=43.24  Aligned_cols=43  Identities=16%  Similarity=0.084  Sum_probs=33.5

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..++.|.++  ..+..++..++..+|.+.+|+++||++||+.+..
T Consensus        52 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~   96 (438)
T TIGR00712        52 YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPA   96 (438)
T ss_pred             HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHH
Confidence            334456653  3567888999999999999999999999876554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=84.86  E-value=2.9  Score=40.34  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhcchhhe--ec-chHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          218 WLLWFVYFLGVGAGVTV--LN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~--i~-n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      |++...++.+.-...+.  ++ -...+.++++.++  ....+++..++..++-+..|.++||++||+.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~   79 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAI   79 (393)
T ss_pred             HHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHH
Confidence            66666665555444332  11 2445666777763  3568888888999999999999999999987554

>TIGR00899 2A0120 sugar efflux transporter

Probab=84.69  E-value=1.6  Score=40.96  Aligned_cols=41  Identities=7%  Similarity=-0.154  Sum_probs=31.6

Q ss_pred             HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       241 i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      +.+++|.++  .....++..+...++....|.++||++||+.+
T Consensus        24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~   66 (375)
T TIGR00899        24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGL   66 (375)
T ss_pred             HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Confidence            345567653  34677788888999999999999999988763

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10504 putative transporter; Provisional

Probab=84.52  E-value=2  Score=42.26  Aligned_cols=74  Identities=14%  Similarity=0.011  Sum_probs=48.8

Q ss_pred             HhhhhhhhHHHHHHHHHHhhcchhheecc-hHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+.+|+++|+...+..++...+ ...... .....+. +|.+.  ..+......+....++++.|.++||++||+.+..
T Consensus       255 ~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~  332 (471)
T PRK10504        255 LKLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVA  332 (471)
T ss_pred             HHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            4588999999887766655443 333333 3334443 46553  2345566777788889999999999998876543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=84.42  E-value=2  Score=43.76  Aligned_cols=40  Identities=15%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             HHhCCCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHH
Q 021096          243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLC  282 (317)
Q Consensus       243 ~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~-~r~~~~~  282 (317)
                      +.+|.++  +....+...+...++.+..|+++||+ |||+.+.
T Consensus        38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il   80 (493)
T PRK15462         38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM   80 (493)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence            3456663  34567788888999999999999999 9887643

>TIGR00805 oat sodium-independent organic anion transporter

Probab=84.19  E-value=2.2  Score=44.66  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=53.6

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHh-hhcccccccchhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSL-CNFAGRLGSGVLSEHYVRS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si-~n~~GRl~~G~~SD~~~r~  278 (317)
                      ..++.++++.||...+..++..+.-..+..-+....+. ++.+.  +.++.++..+ ...+|.++.|+++||++.+
T Consensus       322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            45789999999999998888777666666667777765 46553  3445555565 4679999999999999854

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=83.85  E-value=3.6  Score=41.08  Aligned_cols=45  Identities=11%  Similarity=0.114  Sum_probs=31.9

Q ss_pred             hHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          238 LAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       238 ~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ...+.+ .+|.+.  ..+..+...++..+|++..|+++||++||+.+.
T Consensus       273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  320 (490)
T PRK10642        273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI  320 (490)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            444443 346653  234566677889999999999999999987543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=83.30  E-value=2.7  Score=42.44  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=30.7

Q ss_pred             HHHhCCCc--hhHHHHHHHhhhcccccccchhhhh-hhhhhhHHH
Q 021096          242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLLCS  283 (317)
Q Consensus       242 ~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~-~~r~~~~~r  283 (317)
                      .+.+|.++  +...++.+....++.-+.+|+++|| +|||+.+..
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            34577654  3456666777777777889999999 999987554

>PRK03893 putative sialic acid transporter; Provisional

Probab=83.29  E-value=2.4  Score=41.84  Aligned_cols=47  Identities=15%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             cchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          236 NNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       236 ~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      .....+.+ .+|.+.  .....+...+++.+|++..|+++|+++||+.+.
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~  345 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYV  345 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34555554 566653  456888899999999999999999999886543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=83.25  E-value=2.5  Score=42.38  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             chHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          237 NLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       237 n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      -+.+|.++++.+  +.+..++...++.+.+-+.+|.++|+++||+.+..
T Consensus        28 a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~   76 (495)
T PRK14995         28 AAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML   76 (495)
T ss_pred             HHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            357788888765  34678888999999999999999999999987544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=82.81  E-value=1.6  Score=42.12  Aligned_cols=74  Identities=16%  Similarity=0.134  Sum_probs=45.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHH-HH-hCCC-chhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VA-LGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a-l~~~-~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .+++.++++.||.+.+..++...+. ...+...... +. ++.. ....+.++..+...+|.+.+|.++||++||+.+
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~  290 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAF-NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF  290 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHH-HHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            3467788899998877665544332 2222221111 11 1211 123455667888999999999999999987654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=82.66  E-value=3.2  Score=40.70  Aligned_cols=33  Identities=15%  Similarity=-0.036  Sum_probs=29.2

Q ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ...++...++..+|-+.+|+++||++||+.+-.
T Consensus        58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            467889999999999999999999999987544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=82.52  E-value=3.5  Score=39.50  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             HHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       239 ~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..+.++++.++  .....+...++..+|.+..|.++||++||+.+..
T Consensus        39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            35667777763  4568888999999999999999999999976544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=82.19  E-value=2.7  Score=40.31  Aligned_cols=73  Identities=11%  Similarity=0.033  Sum_probs=44.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheec-chHHHHHHh----CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQIGVAL----GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSL  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~al----~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~  279 (317)
                      +.++.+|++++|.+.+..++.. ....... -.....++.    +.+.  .....++..+.+.++.+..|.+.||+++|+
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~  285 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN  285 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4578899999987665443322 2222121 122222332    1111  234566777888999999999999999886


Q ss_pred             h
Q 021096          280 L  280 (317)
Q Consensus       280 ~  280 (317)
                      .
T Consensus       286 ~  286 (396)
T TIGR00882       286 A  286 (396)
T ss_pred             h
Confidence            5

>PTZ00207 hypothetical protein; Provisional

Probab=81.93  E-value=2.8  Score=43.63  Aligned_cols=64  Identities=11%  Similarity=0.053  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhhcchhheecch--HHHHHHhCCCchh--HHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          217 FWLLWFVYFLGVGAGVTVLNNL--AQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~--~~i~~al~~~~~~--~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ||.+...+.+...+|.++..++  .++.+++|++...  ...++ ...-+.+-+.+|+++|++++|+.+
T Consensus        27 w~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vl   94 (591)
T PTZ00207         27 FALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRPIF   94 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHH
Confidence            3455555555555666665554  5677778876432  22232 222233455789999999998653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=81.57  E-value=3  Score=39.95  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=28.8

Q ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          251 TELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .+..++..++..++.+.+|+++||++||+.+..
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            467889999999999999999999999876544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=81.55  E-value=3.7  Score=39.62  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhh-eecchHHHHHHhCCCch--hHHHHHHH-hhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~al~~~~~--~~~vsl~s-i~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      .+.+.+|++++|.+.+..++....... ...+...+.+.+|.+..  ....+..+ +...+|.++.|.+.||+++|+..
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l  279 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL  279 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            356788999999877765554332221 11222234455676543  23333444 35788999999999999987654

>PRK12382 putative transporter; Provisional

Probab=80.91  E-value=4.9  Score=38.37  Aligned_cols=42  Identities=12%  Similarity=-0.050  Sum_probs=31.1

Q ss_pred             HHHHhCCCchhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       241 i~~al~~~~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ..++.+.++.....+..++.+.+|++..|.++||+++|+.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  283 (392)
T PRK12382        242 YFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI  283 (392)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence            334445544445666788889999999999999999876643

>PRK15011 sugar efflux transporter B; Provisional

Probab=80.62  E-value=3.6  Score=39.61  Aligned_cols=46  Identities=11%  Similarity=0.109  Sum_probs=31.5

Q ss_pred             chHHHH-HHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHH
Q 021096          237 NLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLC  282 (317)
Q Consensus       237 n~~~i~-~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~  282 (317)
                      ...... +.++.++  .....++..+...+|++..|.++||++||+.+.
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~  286 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR  286 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            344444 3456653  234566666777889999999999999986543

>PRK09848 glucuronide transporter; Provisional

Probab=80.12  E-value=2.2  Score=41.89  Aligned_cols=52  Identities=12%  Similarity=-0.004  Sum_probs=36.6

Q ss_pred             hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH-HHHHHHHHHHHHH
Q 021096          245 LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS-YLRSIKLGRKCKC  296 (317)
Q Consensus       245 l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r-~~~~~~~~~~~~~  296 (317)
                      +|.+.  .....++..++.++.-+.+|+++||.++|++..| |+...++..+..+
T Consensus        39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~   93 (448)
T PRK09848         39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS   93 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence            35542  3457778889999999999999999977766566 6555544443333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=80.12  E-value=15  Score=40.71  Aligned_cols=77  Identities=25%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .++...+++.+|.+.+.+++....+.++......+.+. +|.+.  ..++.+..+++..+|.+..|.++++..+++.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~  296 (1140)
T PRK06814        217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI  296 (1140)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence            35667788899999887777666555555556666654 46553  3567889999999999999999987766554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.62
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.26
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.8
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	93.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	93.74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	92.66
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	92.2
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	92.09
2cfq_A	417	Lactose permease; transport, transport mechanism,	91.79
2xut_A	524	Proton/peptide symporter family protein; transport	89.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	87.86
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	84.62

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.62  E-value=0.00024  Score=66.86  Aligned_cols=75  Identities=19%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHH-HHHh-CCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~al-~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ++++.++++.+|...+..++..+....+......+ .++. |.+.  .....++..+++.+||++.|+++||++||+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~  328 (438)
T 3o7q_A          250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL  328 (438)
T ss_dssp             HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            45678889999999999888888777777777777 6665 6653  45678888999999999999999999988653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.26  E-value=0.00042  Score=65.29  Aligned_cols=73  Identities=10%  Similarity=0.029  Sum_probs=57.1

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhh--hhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHY--VRSLL  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~--~r~~~  280 (317)
                      .++.++++.+|.+.+..++.......+......+.++ +|.+.  .....++.++++.+|+++.|+++||+  +||+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            4678899999999998887766655566666666666 56653  35678889999999999999999999  77654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.80  E-value=0.005  Score=58.26  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=53.2

Q ss_pred             hhhhhhhHHHHHHHHHHhhcchhheecchHHHHH-HhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..+|+++||.+...+++....-.++..-+....+ .+|.+.  .....++..+...+|++.+|+++||+|||+.+-.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3678999998888665544333333334444333 466653  4578899999999999999999999999987554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=93.88  E-value=0.052  Score=51.71  Aligned_cols=67  Identities=6%  Similarity=0.004  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHH------hCCCc--hhHHHHHHHhhhcccccccchhhhh-hhhhhhH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVRSLLL  281 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a------l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~-~~r~~~~  281 (317)
                      +.+|.+++..++....-..+........++      ++.+.  .....++..+++.+|.+.+|+++|| ++||+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~   88 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV   88 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            357777776655544433344444444433      66653  4578899999999999999999999 8998753

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=93.74  E-value=0.052  Score=50.70  Aligned_cols=66  Identities=14%  Similarity=0.007  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHHHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLL  281 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~  281 (317)
                      ..++.+++..++....-.++..-...+.+++ .+  +..+..++..++..++.+.+|+++||++||+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l   95 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL   95 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH
Confidence            3444444444333222222223344555555 54  346788999999999999999999999998653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=92.66  E-value=0.22  Score=47.33  Aligned_cols=81  Identities=11%  Similarity=-0.098  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhcchhheecchHHHHHHh-CCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHHHHHHHHHHHH
Q 021096          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCSYLRSIKLGRK  293 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~al-~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r~~~~~~~~~~  293 (317)
                      +|.+++..++....-...........+.. +.+  ......++.++...++....|+++||++||+....+.+.+...++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~  364 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA  364 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence            44444443333333333344444455443 333  345566777888888899999999999998654433333333333


Q ss_pred             HHHH
Q 021096          294 CKCF  297 (317)
Q Consensus       294 ~~~~  297 (317)
                      +++.
T Consensus       365 ~~~~  368 (491)
T 4aps_A          365 GLSF  368 (491)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=92.20  E-value=0.13  Score=47.01  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             cchHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       236 ~n~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      .....+.+++|.++  .....++..+.+.++.+..|+++||++||+.+..
T Consensus        21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   70 (375)
T 2gfp_A           21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV   70 (375)
T ss_dssp             HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH
T ss_pred             hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            34555667777764  3568889999999999999999999999877544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=92.09  E-value=0.24  Score=46.02  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=37.1

Q ss_pred             hHHHHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       238 ~~~i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ...+.++++.++  ..+..++..++..++.+.+|.++||++||+.+..
T Consensus        49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            445667777764  3568899999999999999999999999876444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=91.79  E-value=0.33  Score=45.53  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=44.7

Q ss_pred             HHhhhhhhhHHHHHHHHHHhhcchhhee-cchHHHHHHh-CCC---c--hhHHHHHHHhhhcccccccchhhhhhhhhhh
Q 021096          208 LGEAFVKADFWLLWFVYFLGVGAGVTVL-NNLAQIGVAL-GVN---D--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLL  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i-~n~~~i~~al-~~~---~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~  280 (317)
                      .++.++++++|.+++..++.. .+.... .......++. +..   .  .....++..+++.+|++..|+++||++||+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence            457788999998776544332 222211 2223333332 211   1  1345667778899999999999999998865


Q ss_pred             H
Q 021096          281 L  281 (317)
Q Consensus       281 ~  281 (317)
                      +
T Consensus       292 l  292 (417)
T 2cfq_A          292 L  292 (417)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=89.96  E-value=0.16  Score=48.77  Aligned_cols=69  Identities=10%  Similarity=-0.026  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHhhcchhheecchHH-HHHHhC------CCc--hhHHHHHHHhhhcccccccchhhhhh-hhhhhHHH
Q 021096          215 ADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALG------VND--TTELLCLFSLCNFAGRLGSGVLSEHY-VRSLLLCS  283 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~al~------~~~--~~~~vsl~si~n~~GRl~~G~~SD~~-~r~~~~~r  283 (317)
                      +.+|.+++..++...+-.++...+.. +.+.++      .+.  .....++..++..+|.+.+|+++||+ +||+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~   90 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW   90 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            35676666655544443333344444 344567      553  45788899999999999999999999 99876433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=87.86  E-value=0.12  Score=47.34  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCCc--hhHHHHHHHhhhcccccccchhhhhhhh
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVR  277 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r  277 (317)
                      ++++.+|++.+|.+++..++.......+......+.++ +|.++  .....++.+++..+|++..|.++||.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          191 SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999888777655544444444444443 44432  3456777888899999999999998877

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=84.62  E-value=1.3  Score=41.84  Aligned_cols=32  Identities=16%  Similarity=-0.026  Sum_probs=27.5

Q ss_pred             HHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          252 ELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       252 ~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      +.++...++..+|-+++|+++||+|||+.+..
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~   90 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            46777888999999999999999999987544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.48
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.97
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	95.86

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00013  Score=66.02  Aligned_cols=77  Identities=10%  Similarity=0.061  Sum_probs=55.5

Q ss_pred             CHHhhhhhhhHHHHHHHHHHhhcchhheecchHHHHHH-hCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-l~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..++.++++.+|.+.+..++.......+........++ .+.+  ......++..+.+.+|+++.|+++||++|++....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            45677889999999888877666655544444444333 3444  23567888999999999999999999998765444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00048  Score=60.19  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=52.7

Q ss_pred             hhhhhhhHHHHHHHHHHh-hcchhheecchHH-HHHHhCCCc--hhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          210 EAFVKADFWLLWFVYFLG-VGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~-~g~Gl~~i~n~~~-i~~al~~~~--~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      ..+|+++||.+.+.+++. .+.|.. ..-... +.+.+|.++  ..+..++..+...++.+.+|.++||++||+.+..
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~~-~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~   78 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred             CcccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            458999999998866554 333332 223333 345567764  3568899999999999999999999999986544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.006  Score=54.44  Aligned_cols=66  Identities=23%  Similarity=0.252  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhhcchhheecchH---HHHHHhCCC--chhHHHHHHHhhhcccccccchhhhhhhhhhhHHH
Q 021096          218 WLLWFVYFLGVGAGVTVLNNLA---QIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVRSLLLCS  283 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~i~n~~---~i~~al~~~--~~~~~vsl~si~n~~GRl~~G~~SD~~~r~~~~~r  283 (317)
                      |.+++..+++.....+.-.+.+   ...+++|.+  +..+..++..++..+|.+.+|.++||++||+.+..
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   94 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   94 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            5555544444333332222333   333445665  34678999999999999999999999999986544