Citrus Sinensis ID: 021100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLGSSRTSWGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHccccHHHHHcccccccccccccccEEEccccHHHHccccccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEcccccEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHEEcccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHcccccccccccEEcccccccEEEccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mdpkaskqpsqQEVANFlnipqqqqqqqpQQLQqvnmgenkpaeiKDFQIVIADKEEqtkkqlapkrssnkdrhtkvegrgrrirMPALCAARIFQLTRelghksdgETIQWLLQQAepsiiaatgtgtipasalaaaggsvsqqgasLTAGLHQKiddlgssrtswgglvggnlvgrshqmpaaglwpqpvsgfgfqsssssgpstgnlgtensnylqkmgfpgfdlpgtgtattnmgpmsftsilgsasnqqlpglelglsqdghigvlnpQTLTQIYQQMGharvhqqqqqqqhpqqqqqaapvnkddsqgsgq
Flexible Loop (DISEMBL)
mdpkaskqpsQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEeqtkkqlapkrssnkdrhtkvegrgrrirmpaLCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLGSSRTSWGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVHQQQQQQQHPQqqqqaapvnkddsqgsgq
Low Complexity Region (SEG)
MDPKASKQPSQQEVANFLNIpqqqqqqqpqqlqqVNMGENKPAEIKDFQIVIADKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPasalaaaggsvsqqgaslTAGLHQKIDDLGSSRTSWGGLVGGNLVGRSHQMPAAGLWPqpvsgfgfqsssssgpsTGNLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVhqqqqqqqhpqqqqqaapVNKDDSQGSGQ
Disordered region (IsUnstruct)
***********************************************************************************IRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALA***************************RTSWGGLVGGNLVGRSHQMPAAGLW***********************************************************************LGLSQDGHIGVLNPQTLTQIY*************************************
Disordered Region (DISOPRED)
**********************************************************************************RIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTG*************************************************************************************************FDLPGT**************************************VLNPQT******************************************
Disordered Region (DISEMBL)
************EVANFLNI****************MGENKPAEIKDFQIVIADKEEQ*********************RGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASA**************LTAGLHQKIDDLGSSRTSWGGLVGGNLVGRSHQMPAAGLWPQPVSGF*************NLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQ***********************************
Disordered Region (DISPRO)
**************************************************************************TKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAG**************************************RSHQMPAAGLWPQPVSGFGFQ*SSSSGPSTGNLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVH****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLGSSRTSWGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q9LSD5	314	Transcription factor TCP2	yes	no	0.917	0.926	0.538	1e-68
Q9C9L2	325	Transcription factor TCP1	no	no	0.230	0.224	0.849	9e-33
O64647	356	Transcription factor TCP9	no	no	0.233	0.207	0.824	8e-32
Q93Z00	489	Transcription factor TCP1	no	no	0.214	0.139	0.897	9e-32
Q9FLM6	243	Transcription factor TCP6	no	no	0.681	0.888	0.365	3e-31
Q9LT89	293	Transcription factor TCP1	no	no	0.255	0.276	0.753	4e-31
Q9C518	401	Transcription factor TCP8	no	no	0.264	0.209	0.729	8e-31
Q53PH2	448	Transcription factor PCF3	no	no	0.249	0.176	0.765	9e-30
Q9C7G4	375	Transcription factor TCP2	no	no	0.227	0.192	0.769	2e-29
Q6ZBH6	373	Transcription factor PCF2	no	no	0.220	0.187	0.842	2e-29

>sp|Q9LSD5|TCP20_ARATH Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 183/340 (53%), Positives = 215/340 (63%), Gaps = 49/340 (14%)

Query: 1   MDPKASKQPSQQEVANFLNIPQQQQQQ---QPQQLQQVNMGENKP--AEIKDFQIVIA-- 53
           MDPK     ++ +V NFLN P   + Q          V   EN+    EIKDFQIV++  
Sbjct: 1   MDPK---NLNRHQVPNFLNPPPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSAS 57

Query: 54  ----DKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET 109
               +K+ Q + QL PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET
Sbjct: 58  DKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET 117

Query: 110 IQWLLQQAEPSIIAATGTGTIPASALAAAGGSVS-QQGASLTAGLHQKIDDLGSSRTS-- 166
           IQWLLQQAEPSIIAATG+GTIPASALA++  + +  QG SLTAGL    D  G S +S  
Sbjct: 118 IQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGR 177

Query: 167 ---WGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGF 223
              W G+ GG  V RS  +P  GLWP  V+GFG     S  P+TG L +E + Y  ++GF
Sbjct: 178 PLNW-GIGGGEGVSRS-SLP-TGLWPN-VAGFG-----SGVPTTG-LMSEGAGY--RIGF 225

Query: 224 PGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIY--- 280
           PGFD PG       +G MSF SILG   N Q+PGLELGLSQ+G++GVLNPQ+ TQIY   
Sbjct: 226 PGFDFPG-------VGHMSFASILGGNHN-QMPGLELGLSQEGNVGVLNPQSFTQIYQQM 277

Query: 281 ---QQMGHARVHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ 317
              Q     RV           QQ+      KDDSQGSG+
Sbjct: 278 GQAQAQAQGRVLHHMHHNHEEHQQESG---EKDDSQGSGR 314

Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9L2|TCP15_ARATH Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1

 Score =  140 bits (354), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 70/73 (95%)

Query: 61  KQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS 120
           K+  PKR+S KDRHTKVEGRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQAEP+
Sbjct: 43  KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPA 102

Query: 121 IIAATGTGTIPAS 133
           +IAATGTGTIPA+
Sbjct: 103 VIAATGTGTIPAN 115

Arabidopsis thaliana (taxid: 3702)

>sp|O64647|TCP9_ARATH Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1

 Score =  137 bits (346), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 68/74 (91%)

Query: 66  KRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAAT 125
           KR+S KDRHTKVEGRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLL+ AEP+IIAAT
Sbjct: 71  KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAAT 130

Query: 126 GTGTIPASALAAAG 139
           GTGT+PA A++  G
Sbjct: 131 GTGTVPAIAMSVNG 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1

 Score =  137 bits (346), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 61/68 (89%), Positives = 67/68 (98%)

Query: 66  KRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAAT 125
           KR+S KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQAEPS+IAAT
Sbjct: 113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAAT 172

Query: 126 GTGTIPAS 133
           GTGTIPA+
Sbjct: 173 GTGTIPAN 180

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLM6|TCP6_ARATH Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 149/312 (47%), Gaps = 96/312 (30%)

Query: 1   MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEEQTK 60
           M+PK +     Q + +FLN         P +  Q N  + K  E+K F IV+ +K ++ +
Sbjct: 3   MEPKKN-----QNLPSFLN---------PSRQNQDNDKKRKQTEVKGFDIVVGEKRKKKE 48

Query: 61  KQLA----------PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETI 110
            +             K+  NKDRH KVEGRGRR+R+P LCAARI+QLT+ELGHKSDGET+
Sbjct: 49  NEEEDQEIQILYEKEKKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETL 108

Query: 111 QWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLGSSRTSWGGL 170
           +WLLQ AEPSI++AT  G  P  ++      VSQ    LTA L        +SRT     
Sbjct: 109 EWLLQHAEPSILSATVNGIKPTESV------VSQ--PPLTADLMICHSVEEASRT----- 155

Query: 171 VGGNLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGFPGFDL-P 229
                     QM A GLW            + +G + G                GFDL  
Sbjct: 156 ----------QMEANGLW-----------RNETGQTIG----------------GFDLNY 178

Query: 230 GTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMG----- 284
           G G     +  + F        + Q PGLEL LSQ   +GVLNP    Q++QQMG     
Sbjct: 179 GIGFDFNGVPEIGF-------GDNQTPGLELRLSQ---VGVLNP----QVFQQMGKEQFR 224

Query: 285 --HARVHQQQQQ 294
             H   H+ QQQ
Sbjct: 225 VLHHHSHEDQQQ 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT89|TCP19_ARATH Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 72/81 (88%)

Query: 59  TKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 118
            K + APKR ++KDRHTKVEGRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLL++AE
Sbjct: 46  VKTKPAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105

Query: 119 PSIIAATGTGTIPASALAAAG 139
           P+II ATGTGT+PA A++  G
Sbjct: 106 PAIIEATGTGTVPAIAVSVNG 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C518|TCP8_ARATH Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 74/85 (87%), Gaps = 1/85 (1%)

Query: 67  RSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATG 126
           + S KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQAEP+I+AATG
Sbjct: 57  KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116

Query: 127 TGTIPASALAAAGGSVSQQGASLTA 151
           TGTIPA+  +    S+   G++L+A
Sbjct: 117 TGTIPAN-FSTLSVSLRSSGSTLSA 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q53PH2|PCF3_ORYSJ Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 71/81 (87%), Gaps = 2/81 (2%)

Query: 70  NKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGT 129
            KDRHTKVEGRGRRIRMPALCAAR+FQLTRELGHK+DGETI+WLLQQAEP+I+AATGTGT
Sbjct: 152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 211

Query: 130 IPA--SALAAAGGSVSQQGAS 148
           IPA  S+LA +  S +   +S
Sbjct: 212 IPANFSSLAVSLRSAASHSSS 232

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C7G4|TCP22_ARATH Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 69/78 (88%), Gaps = 6/78 (7%)

Query: 71  KDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTI 130
           KDRHTKV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQAEP+IIA+TGTGTI
Sbjct: 64  KDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTI 123

Query: 131 PA------SALAAAGGSV 142
           PA      ++L + GGS 
Sbjct: 124 PANFSTLNASLRSGGGST 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZBH6|PCF2_ORYSJ Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 64/70 (91%)

Query: 70  NKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGT 129
           N+DRHTKVEGRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQ+EP+IIAATGTGT
Sbjct: 75  NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGT 134

Query: 130 IPASALAAAG 139
           +PA A    G
Sbjct: 135 VPAIATTVDG 144

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
255543685	320	transcription factor, putative [Ricinus	0.949	0.940	0.720	1e-112
225451501	296	PREDICTED: transcription factor TCP20-li	0.911	0.976	0.771	1e-110
224055761	320	predicted protein [Populus trichocarpa]	0.940	0.931	0.710	1e-107
255641555	329	unknown [Glycine max]	0.974	0.939	0.694	1e-104
356571569	330	PREDICTED: transcription factor TCP20-li	0.974	0.936	0.692	1e-104
224129072	321	predicted protein [Populus trichocarpa]	0.829	0.819	0.759	1e-101
449460578	296	PREDICTED: transcription factor TCP20-li	0.895	0.959	0.655	3e-97
356561675	345	PREDICTED: transcription factor TCP20-li	0.971	0.892	0.660	2e-93
302399075	315	TCP domain class transcription factor [M	0.952	0.958	0.718	8e-93
357503701	284	Transcription factor PCF2 [Medicago trun	0.880	0.982	0.580	7e-83

>gi|255543685|ref|XP_002512905.1| transcription factor, putative [Ricinus communis] gi|223547916|gb|EEF49408.1| transcription factor, putative [Ricinus communis]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/336 (72%), Positives = 257/336 (76%), Gaps = 35/336 (10%)

Query: 1   MDPKASKQPSQQEVANFLN----------IPQQQQQQQPQQLQQVNMGENKPAEIKDFQI 50
           MDPK+S   +  E+ NFL              QQ+QQ   Q QQ NMGENKPAEIKDFQI
Sbjct: 1   MDPKSSNSKNPHELPNFLTHPPQPALQQQQQPQQEQQHQNQKQQTNMGENKPAEIKDFQI 60

Query: 51  VIADKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETI 110
           VIADKEEQ KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETI
Sbjct: 61  VIADKEEQ-KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETI 119

Query: 111 QWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLG--------S 162
           QWLLQQAEPSIIAATGTGTIPASAL AAGGSVSQQG SL+AGLHQKIDDLG        +
Sbjct: 120 QWLLQQAEPSIIAATGTGTIPASALVAAGGSVSQQGTSLSAGLHQKIDDLGGSSSITSSN 179

Query: 163 SRTSWGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSS-SSGPSTGNLGTENSNYLQKM 221
           SRTSW  +VGGNL GR H +   GLWP PV GFGFQSSS ++GP T NLG E+S+YLQK+
Sbjct: 180 SRTSW-AMVGGNL-GRPHHVATTGLWP-PVGGFGFQSSSTTTGPVTSNLGNESSSYLQKI 236

Query: 222 GFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQ 281
           GFPGFDLPG      NMGPMSFTSILG  SNQQ+PGLELGLSQDGHIGVLN Q  +QIYQ
Sbjct: 237 GFPGFDLPG-----NNMGPMSFTSILGGTSNQQIPGLELGLSQDGHIGVLNSQAFSQIYQ 291

Query: 282 QMGHARVHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ 317
           QMG ARV  Q Q Q             KDDSQGSGQ
Sbjct: 292 QMGQARVQHQHQHQHQQNPA-------KDDSQGSGQ 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451501|ref|XP_002271949.1| PREDICTED: transcription factor TCP20-like [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 250/324 (77%), Positives = 261/324 (80%), Gaps = 35/324 (10%)

Query: 1   MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEEQTK 60
           MDPK SKQP  QEV NFL++PQ             NMGENKPAE+KDFQIVIADKEE  K
Sbjct: 1   MDPKGSKQP--QEVPNFLSLPQP------------NMGENKPAEVKDFQIVIADKEE-GK 45

Query: 61  KQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS 120
           KQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS
Sbjct: 46  KQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS 105

Query: 121 IIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDL-------GSSRTSWGGLVGG 173
           IIAATGTGTIPASALAAAGGSVSQQG S++AGLHQKID+L       GSSRTSW  +VG 
Sbjct: 106 IIAATGTGTIPASALAAAGGSVSQQGTSISAGLHQKIDELGGSSIGSGSSRTSW-AMVGA 164

Query: 174 NLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGFPGFDLPGTGT 233
           NL GR H   A GLWP PVSGFGFQ  SSSGPST NLG E+SNYLQK+ FPGFDLP    
Sbjct: 165 NL-GRPHV--ATGLWP-PVSGFGFQ--SSSGPSTTNLGNESSNYLQKIAFPGFDLP---- 214

Query: 234 ATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVHQQQQ 293
             TN+GPMSFTSILG  SNQQLPGLELGLSQDGHIGVLN Q L+QIYQQMG ARVHQQQQ
Sbjct: 215 -ATNLGPMSFTSILG-GSNQQLPGLELGLSQDGHIGVLNSQALSQIYQQMGQARVHQQQQ 272

Query: 294 QQQHPQQQQQAAPVNKDDSQGSGQ 317
            Q   Q Q Q  P  KDDSQGSGQ
Sbjct: 273 HQHQHQHQHQQQPPAKDDSQGSGQ 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055761|ref|XP_002298640.1| predicted protein [Populus trichocarpa] gi|222845898|gb|EEE83445.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/339 (71%), Positives = 260/339 (76%), Gaps = 41/339 (12%)

Query: 1   MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQV-------------NMGENKPAEIKD 47
           MDPK S   +  E+  FL          P Q                 NMG+NKPAEIKD
Sbjct: 1   MDPKGSNSKNPHELPTFLTHTHPSPPHPPPQPHLQQPQQLHSQNQQQPNMGDNKPAEIKD 60

Query: 48  FQIVIADKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDG 107
           FQIV+ADKEEQ KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDG
Sbjct: 61  FQIVVADKEEQ-KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDG 119

Query: 108 ETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLG---SSR 164
           ETIQWLLQQAEPSIIAATGTGTIPASALAAAGG++SQQGASL+AGLHQKIDDLG   SSR
Sbjct: 120 ETIQWLLQQAEPSIIAATGTGTIPASALAAAGGAISQQGASLSAGLHQKIDDLGGSSSSR 179

Query: 165 TSWGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSS-SSGPSTGNLGTE-----NSNYL 218
            SW  ++GGNL GR H +  AGLWP PV G+GFQSSS S+GPST N+GTE      S+YL
Sbjct: 180 ASW-AMLGGNL-GRPHHVTTAGLWP-PVGGYGFQSSSNSTGPSTTNIGTEAAAAGGSSYL 236

Query: 219 QKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQ 278
           QK+GFPGFDLPG      NMGPMSFTSILG  + QQLPGLELGLSQDGHIGVL+PQ L Q
Sbjct: 237 QKLGFPGFDLPG-----NNMGPMSFTSILGGGT-QQLPGLELGLSQDGHIGVLSPQALNQ 290

Query: 279 IYQQMGHARVHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ 317
           IYQQMGHARVHQQQ QQQ+P         +KDDSQGSGQ
Sbjct: 291 IYQQMGHARVHQQQHQQQNP---------SKDDSQGSGQ 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641555|gb|ACU21051.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/334 (69%), Positives = 259/334 (77%), Gaps = 25/334 (7%)

Query: 1   MDPKASKQPSQQEVA-NFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEEQT 59
           MDPK SKQ   QEV   FL++PQ   QQQ       NMGENKP+E+KDFQIV+A +++++
Sbjct: 1   MDPKGSKQQQPQEVVPKFLSLPQHHYQQQ-GNSNNNNMGENKPSEVKDFQIVVAAEKDES 59

Query: 60  KKQ--LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 117
           KKQ  LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA
Sbjct: 60  KKQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 119

Query: 118 EPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGL---HQKIDDL-----GSSRTSWGG 169
           EPSIIAATGTGTIPASALAAAG S+S QG+SL++ L   HQKID+L     GSSR SW  
Sbjct: 120 EPSIIAATGTGTIPASALAAAGNSLSPQGSSLSSALHHQHQKIDELGCGSGGSSRASW-Q 178

Query: 170 LVGGNLVGRSHQ-MPAAGLWPQPVSGFGFQ-----SSSSSGPSTGNLGTENSNYLQKMGF 223
           +VGGNL GR H  +   GLWP  VSGFGFQ     +++SSGPS   L TE+SNYLQK+ F
Sbjct: 179 MVGGNL-GRPHLGVATTGLWPPHVSGFGFQTATTTTTTSSGPSNATLATESSNYLQKIAF 237

Query: 224 PGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQM 283
           PGFDLP   T+ TNMG MSFTSILG A +QQ+PGLELGLSQDGHIGVLNPQ L QIYQQM
Sbjct: 238 PGFDLP---TSATNMGHMSFTSILGGAGSQQMPGLELGLSQDGHIGVLNPQALNQIYQQM 294

Query: 284 GH-ARVHQQQQQQQHPQQQQQAAPVNKDDSQGSG 316
            H A+  +  QQ QH QQQ Q  P  KDDSQGSG
Sbjct: 295 NHQAQAGRVHQQHQHQQQQHQQTPA-KDDSQGSG 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571569|ref|XP_003553949.1| PREDICTED: transcription factor TCP20-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/335 (69%), Positives = 259/335 (77%), Gaps = 26/335 (7%)

Query: 1   MDPKASKQPSQQEVA-NFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEEQT 59
           MDPK SKQ   QEV   FL++PQ   QQQ       NMGENKP+E+KDFQIV+A +++++
Sbjct: 1   MDPKGSKQQQPQEVVPKFLSLPQHHYQQQ-GNSNNNNMGENKPSEVKDFQIVVAAEKDES 59

Query: 60  KKQ--LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 117
           KKQ  LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA
Sbjct: 60  KKQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 119

Query: 118 EPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGL---HQKIDDL-----GSSRTSWGG 169
           EPSIIAATGTGTIPASALAAAG S+S QG+SL++ L   HQKID+L     GSSR SW  
Sbjct: 120 EPSIIAATGTGTIPASALAAAGNSLSPQGSSLSSALHHQHQKIDELGCGSGGSSRASW-Q 178

Query: 170 LVGGNLVGRSHQ-MPAAGLWPQPVSGFGFQ------SSSSSGPSTGNLGTENSNYLQKMG 222
           +VGGNL GR H  +   GLWP  VSGFGFQ      +++SSGPS   L TE+SNYLQK+ 
Sbjct: 179 MVGGNL-GRPHLGVATTGLWPPHVSGFGFQTATTTTTTTSSGPSNATLATESSNYLQKIA 237

Query: 223 FPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQ 282
           FPGFDLP   T+ TNMG MSFTSILG A +QQ+PGLELGLSQDGHIGVLNPQ L QIYQQ
Sbjct: 238 FPGFDLP---TSATNMGHMSFTSILGGAGSQQMPGLELGLSQDGHIGVLNPQALNQIYQQ 294

Query: 283 MGH-ARVHQQQQQQQHPQQQQQAAPVNKDDSQGSG 316
           M H A+  +  QQ QH QQQ Q  P  KDDSQGSG
Sbjct: 295 MNHQAQAGRVHQQHQHQQQQHQQTPA-KDDSQGSG 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129072|ref|XP_002328883.1| predicted protein [Populus trichocarpa] gi|222839313|gb|EEE77650.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/291 (75%), Positives = 241/291 (82%), Gaps = 28/291 (9%)

Query: 34  QVNMGENKPAEIKDFQIVIADKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAAR 93
           Q NMGENK AEIKDFQIV+ADKEEQ KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAAR
Sbjct: 52  QPNMGENKAAEIKDFQIVVADKEEQ-KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAAR 110

Query: 94  IFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGL 153
           IFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGG++SQQGASL+AGL
Sbjct: 111 IFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGAISQQGASLSAGL 170

Query: 154 HQKIDDLGSS---RTSWGGLVGGNLVGRSHQMPAAGLWPQPVSGFGFQSSS-SSGPSTGN 209
           HQKIDD+G S   RTSW  ++GGNL GR HQ+ +AGLWP PV G+GFQSSS ++GPST N
Sbjct: 171 HQKIDDIGESSSRRTSW-AMLGGNL-GRPHQVTSAGLWP-PVGGYGFQSSSNTTGPSTTN 227

Query: 210 LGTE---NSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDG 266
           + +E    S+YLQK GF GFD+PG      N+GPMS TSILG  S QQLPGLELGLSQDG
Sbjct: 228 IVSEGGGGSSYLQKNGFSGFDMPG-----NNIGPMSLTSILGVGS-QQLPGLELGLSQDG 281

Query: 267 HIGVLNPQTLTQIYQQMGHARVHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ 317
           HIGVL+PQ L+QIYQQMG ARV Q QQQ             +KDDSQGSGQ
Sbjct: 282 HIGVLSPQALSQIYQQMGQARVQQHQQQNP-----------SKDDSQGSGQ 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460578|ref|XP_004148022.1| PREDICTED: transcription factor TCP20-like [Cucumis sativus]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 215/328 (65%), Positives = 235/328 (71%), Gaps = 44/328 (13%)

Query: 1   MDPKAS---KQPSQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEE 57
           MDPK S   KQP ++ V NF  + Q++  ++        MGENKPAEIKDFQI IA+KEE
Sbjct: 1   MDPKTSSTTKQPQEEVVPNFFKLSQEEAAEE-----VAIMGENKPAEIKDFQIAIAEKEE 55

Query: 58  QTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 117
             KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTREL HKSDGETIQWLLQQA
Sbjct: 56  -GKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELDHKSDGETIQWLLQQA 114

Query: 118 EPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDL---GSSRTSWGGLVGGN 174
           EPSIIAATGTGTIPASALAAA GSVSQQGASL+AGLHQK+++L   GSSR +W       
Sbjct: 115 EPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANW------- 167

Query: 175 LVGRSH--QMPAAGLWPQPVSGFGF----QSSSSSGPSTGNLGTENSNYLQKMGFPGFDL 228
             GR H    P A LWP  V+GFGF     +++ +  S  NL  E SNY  K+GFP FDL
Sbjct: 168 --GRPHLAATPTA-LWPSSVTGFGFQSSTAAAAVAAQSATNLPNETSNYFHKLGFPPFDL 224

Query: 229 PGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARV 288
                  TNMGPMSFTSILG A+ QQLPGLELGLSQDGHIGVLNPQ L QIYQQMG  RV
Sbjct: 225 -----TPTNMGPMSFTSILG-ANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRV 278

Query: 289 HQQQQQQQHPQQQQQAAPVNKDDSQGSG 316
           HQ   QQ          P  KDDSQ S 
Sbjct: 279 HQHHHQQ----------PPAKDDSQDSA 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561675|ref|XP_003549105.1| PREDICTED: transcription factor TCP20-like [Glycine max]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 232/351 (66%), Positives = 252/351 (71%), Gaps = 43/351 (12%)

Query: 1   MDPKASKQP---SQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADKEE 57
           MDPK SKQ    SQ+ V NFL++PQQQQ          NMGENKPAE+KDFQIV+A+ +E
Sbjct: 1   MDPKGSKQQPQQSQEVVPNFLSLPQQQQGNT----NNNNMGENKPAEVKDFQIVVAENKE 56

Query: 58  QTKKQ---LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLL 114
           ++KKQ   LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLL
Sbjct: 57  ESKKQQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLL 116

Query: 115 QQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLH---QKIDDL-----GSSRTS 166
           QQAEPSIIAATGTGTIPASALAAAG S+S Q ASL++ LH   QKID+L      SSR S
Sbjct: 117 QQAEPSIIAATGTGTIPASALAAAGNSLSPQAASLSSSLHQHQQKIDELGGSGGSSSRAS 176

Query: 167 WGGLVGGNLVGRSH----QMPAAGLWPQPVSGFGFQ----------SSSSSGPSTGNLGT 212
           W  +VGGNL GR H       AAGLWP  VSGFGFQ          ++SSSGPS   L T
Sbjct: 177 W-QMVGGNL-GRPHLGVGVATAAGLWPPHVSGFGFQTPPTTTTPTTTTSSSGPSNATLAT 234

Query: 213 ENSNYLQKMGFPGFDLPGTGTATTNMGPMSFTSILGSASN---QQLPGLELGLSQDGHIG 269
           E+SNYLQK+ FPGFDLP   +AT  MG MSFTSILG       Q +PGLELGLSQDGHIG
Sbjct: 235 ESSNYLQKIAFPGFDLP--TSATNMMGHMSFTSILGGGGGGGAQHMPGLELGLSQDGHIG 292

Query: 270 VLNPQTLTQIYQQMGHA-RVHQQQQQQQHPQQQQQAAPVN---KDDSQGSG 316
           VLN Q L QIYQQM  A RVH  Q Q  H   QQQ        KDDSQGSG
Sbjct: 293 VLNQQALNQIYQQMNQAGRVHHHQHQHHHQHHQQQQHHQQTPAKDDSQGSG 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399075|gb|ADL36832.1| TCP domain class transcription factor [Malus x domestica]

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 237/330 (71%), Positives = 255/330 (77%), Gaps = 28/330 (8%)

Query: 1   MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQV-------NMGENKPAEIKDFQIVIA 53
           MDPK SKQ   Q++ +FL++P Q Q Q  QQ Q         NM +NKPAEIKDFQIVIA
Sbjct: 1   MDPKGSKQ--TQDIPSFLSLPPQSQPQPEQQQQPQQQPQPNNNMSDNKPAEIKDFQIVIA 58

Query: 54  DKEEQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWL 113
           DK+E  KKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWL
Sbjct: 59  DKDESGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWL 118

Query: 114 LQQAEPSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLGSS---RTSWGGL 170
           LQQAEPSI+A TGTGTIPASALAAAGGSVSQQG SL+AGLHQKID+LG S   RTSW  +
Sbjct: 119 LQQAEPSIVATTGTGTIPASALAAAGGSVSQQGTSLSAGLHQKIDELGGSSGGRTSW-AM 177

Query: 171 VGGNLVGRSHQMPAAGLWPQPVSGFGFQSSSSSGPSTGNLGTENSNYLQKMGFPGFDLPG 230
           VGGNL GR H     GLWP PVS FGFQSSS    +T NLGTE+SNYLQK+GFPGFDLP 
Sbjct: 178 VGGNL-GRPHVAGVGGLWP-PVSSFGFQSSSGPPSATTNLGTESSNYLQKIGFPGFDLP- 234

Query: 231 TGTATTNMGPMSFTSI---LGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHAR 287
                +N+GPMSFTSI         QQLPGLELGLSQDGHIGVLN Q L+QIYQQMGHAR
Sbjct: 235 ----VSNLGPMSFTSILGGGNQQQQQQLPGLELGLSQDGHIGVLNSQALSQIYQQMGHAR 290

Query: 288 VHQQQQQQQHPQQQQQAAPVNKDDSQGSGQ 317
           VHQQ       Q   Q  P +KDDSQGSGQ
Sbjct: 291 VHQQPP-----QHHHQQQPPSKDDSQGSGQ 315

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503701|ref|XP_003622139.1| Transcription factor PCF2 [Medicago truncatula] gi|355497154|gb|AES78357.1| Transcription factor PCF2 [Medicago truncatula]

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 187/322 (58%), Positives = 220/322 (68%), Gaps = 43/322 (13%)

Query: 1   MDPKASKQPSQQEVANFLNIPQQQQQQQPQQLQQVNMGENKPAEIKDFQIVIADK--EEQ 58
           MDPK SKQ SQ                        NMGENK +E K+ QIV+++   +++
Sbjct: 1   MDPKNSKQQSQLS----------------------NMGENKESETKNLQIVLSETTTKDE 38

Query: 59  TKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 118
           TKKQLAPKR+SNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+E
Sbjct: 39  TKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSE 98

Query: 119 PSIIAATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDDLGSSRTSWGGLVGGNLVGR 178
           PSIIAATGTGTIPASALA++G +++ QG+SL++GL  +++D    R +W      +   +
Sbjct: 99  PSIIAATGTGTIPASALASSGNTLTPQGSSLSSGL--QLND----RNTWAQTHQAHQAHQ 152

Query: 179 SHQMPAAGLWP-QPVSGFGF-QSSSSSGPSTGNLGTENS-NYLQKMGFPGFDLPGTGTAT 235
            H + +  LWP   V GFGF QSSSS G     +G  NS NY QK+GF GFD+P TGT  
Sbjct: 153 GHHVSSTSLWPHHHVGGFGFHQSSSSGGLVATTVGENNSGNYFQKIGFSGFDMP-TGT-N 210

Query: 236 TNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQMGHARVHQQQQQQ 295
             +G MSFTSILG A NQQ+PGLELGLSQDGHIGVLN Q LTQIYQQ+G       Q Q 
Sbjct: 211 LGVGGMSFTSILGGA-NQQMPGLELGLSQDGHIGVLNQQALTQIYQQIG-------QNQT 262

Query: 296 QHPQQQQQAAPVNKDDSQGSGQ 317
           +   Q QQ     KDDS  S Q
Sbjct: 263 RVQHQNQQNNNTTKDDSHSSEQ 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2092020	314	TCP20 "AT3G27010" [Arabidopsis	0.927	0.936	0.507	6.9e-63
TAIR|locus:2163081	243	AT5G41030 "AT5G41030" [Arabido	0.302	0.395	0.556	1.1e-31
TAIR|locus:2166518	293	AT5G51910 "AT5G51910" [Arabido	0.236	0.255	0.773	3.3e-30
TAIR|locus:2205065	325	TCP15 "AT1G69690" [Arabidopsis	0.258	0.252	0.759	6.2e-30
TAIR|locus:2079202	489	TCP14 "AT3G47620" [Arabidopsis	0.208	0.134	0.909	6.7e-29
TAIR|locus:2196220	401	TCP8 "AT1G58100" [Arabidopsis	0.205	0.162	0.893	8.2e-28
TAIR|locus:2043659	356	TCP9 "TCP domain protein 9" [A	0.208	0.185	0.878	1e-27
TAIR|locus:2030321	375	AT1G72010 "AT1G72010" [Arabido	0.205	0.173	0.846	7.3e-27
TAIR|locus:2150803	239	TCP11 "AT5G08330" [Arabidopsis	0.375	0.497	0.535	1.9e-26
TAIR|locus:2014661	341	AT1G35560 "AT1G35560" [Arabido	0.211	0.196	0.820	2.5e-26

TAIR|locus:2092020 TCP20 "AT3G27010" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 171/337 (50%), Positives = 194/337 (57%)

Query:     1 MDPKASKQPSQQEVANFLNIX---XXXXXXXXXXXXXVNMGEN-KPA-EIKDFQIVIA-- 53
             MDPK     ++ +V NFLN                  V   EN KP  EIKDFQIV++  
Sbjct:     1 MDPK---NLNRHQVPNFLNPPPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSAS 57

Query:    54 DKE----EQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET 109
             DKE     Q + QL PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET
Sbjct:    58 DKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGET 117

Query:   110 IQWLLQQAEPSIIAATGTGTIPXXXXXXXXXXXXXXXXXX-TAGLHQKID-DLGSSRT-- 165
             IQWLLQQAEPSIIAATG+GTIP                   TAGL    D D GSS +  
Sbjct:   118 IQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGR 177

Query:   166 --SWGGLVGGNLVGRSHQMPAAGLWPXXXXXXXXXXXXXXXXXTGNLGTENSNYLQKMGF 223
               +WG + GG  V RS  +P  GLWP                 TG L +E + Y  ++GF
Sbjct:   178 PLNWG-IGGGEGVSRS-SLPT-GLWPNVAGFGSGVPT------TG-LMSEGAGY--RIGF 225

Query:   224 PGFDLPGTGTATTNMGPMSFTSILGSASNQQLPGLELGLSQDGHIGVLNPQTLTQIYQQM 283
             PGFD PG       +G MSF SILG   NQ +PGLELGLSQ+G++GVLNPQ+ TQIYQQM
Sbjct:   226 PGFDFPG-------VGHMSFASILGGNHNQ-MPGLELGLSQEGNVGVLNPQSFTQIYQQM 277

Query:   284 GHARVXXXXXXXXXXXXXXXXXXVN---KDDSQGSGQ 317
             G A+                        KDDSQGSG+
Sbjct:   278 GQAQAQAQGRVLHHMHHNHEEHQQESGEKDDSQGSGR 314

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

TAIR|locus:2163081 AT5G41030 "AT5G41030" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 59/106 (55%), Positives = 74/106 (69%)

Query:    36 NMGENKPAEIKDFQIVIADK-------EEQTKKQLA---PKRSSNKDRHTKVEGRGRRIR 85
             N  + K  E+K F IV+ +K       EE  + Q+     K+  NKDRH KVEGRGRR+R
Sbjct:    24 NDKKRKQTEVKGFDIVVGEKRKKKENEEEDQEIQILYEKEKKKPNKDRHLKVEGRGRRVR 83

Query:    86 MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIP 131
             +P LCAARI+QLT+ELGHKSDGET++WLLQ AEPSI++AT  G  P
Sbjct:    84 LPPLCAARIYQLTKELGHKSDGETLEWLLQHAEPSILSATVNGIKP 129

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2166518 AT5G51910 "AT5G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 58/75 (77%), Positives = 68/75 (90%)

Query:    57 EQTKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ 116
             +  K + APKR ++KDRHTKVEGRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLL++
Sbjct:    44 QPVKTKPAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLER 103

Query:   117 AEPSIIAATGTGTIP 131
             AEP+II ATGTGT+P
Sbjct:   104 AEPAIIEATGTGTVP 118

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2205065 TCP15 "AT1G69690" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query:    50 IVIADKEEQTK-KQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGE 108
             I+    E  ++ K+  PKR+S KDRHTKVEGRGRRIRMPA+CAAR+FQLTRELGHKSDGE
Sbjct:    31 IISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGE 90

Query:   109 TIQWLLQQAEPSIIAATGTGTIP 131
             TI+WLLQQAEP++IAATGTGTIP
Sbjct:    91 TIEWLLQQAEPAVIAATGTGTIP 113

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0008283 "cell proliferation" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2079202 TCP14 "AT3G47620" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 6.7e-29, P = 6.7e-29
 Identities = 60/66 (90%), Positives = 65/66 (98%)

Query:    66 KRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAAT 125
             KR+S KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQAEPS+IAAT
Sbjct:   113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAAT 172

Query:   126 GTGTIP 131
             GTGTIP
Sbjct:   173 GTGTIP 178

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IEP

GO:0008283 "cell proliferation" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009735 "response to cytokinin stimulus" evidence=IMP

TAIR|locus:2196220 TCP8 "AT1G58100" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 59/66 (89%), Positives = 65/66 (98%)

Query:    66 KRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAAT 125
             KRS+ KDRHTKV+GRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQAEP+I+AAT
Sbjct:    57 KRST-KDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAAT 115

Query:   126 GTGTIP 131
             GTGTIP
Sbjct:   116 GTGTIP 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0001047 "core promoter binding" evidence=IDA

TAIR|locus:2043659 TCP9 "TCP domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 58/66 (87%), Positives = 63/66 (95%)

Query:    66 KRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAAT 125
             KR+S KDRHTKVEGRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLL+ AEP+IIAAT
Sbjct:    71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAAT 130

Query:   126 GTGTIP 131
             GTGT+P
Sbjct:   131 GTGTVP 136

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0008361 "regulation of cell size" evidence=IGI

GO:0048364 "root development" evidence=IMP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

TAIR|locus:2030321 AT1G72010 "AT1G72010" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/65 (84%), Positives = 62/65 (95%)

Query:    67 RSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATG 126
             +   KDRHTKV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQAEP+IIA+TG
Sbjct:    60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTG 119

Query:   127 TGTIP 131
             TGTIP
Sbjct:   120 TGTIP 124

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2150803 TCP11 "AT5G08330" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 68/127 (53%), Positives = 82/127 (64%)

Query:    57 EQT--KKQL-APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWL 113
             EQT  K  L A K+  +KDRH+KV+GRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WL
Sbjct:    15 EQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWL 74

Query:   114 LQQAEPSIIAATGTGTIPXXXXXXXXXXXXXXXXXXTAGLHQ-KIDDLGSSRTSWGGLVG 172
             L+QAEPSIIAATGTGT P                  T G    + ++  S     GGL  
Sbjct:    75 LRQAEPSIIAATGTGTTPASFSTASLSTSSPF----TLGKRVVRAEEGESGGGGGGGLTV 130

Query:   173 GNLVGRS 179
             G+ +G S
Sbjct:   131 GHTMGTS 137

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2014661 AT1G35560 "AT1G35560" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 55/67 (82%), Positives = 62/67 (92%)

Query:    65 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAA 124
             P +  +KDRH KV+GRGRRIRMPA+CAAR+FQLTREL HKSDGETI+WLLQQAEP+IIAA
Sbjct:    50 PAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAA 109

Query:   125 TGTGTIP 131
             TGTGTIP
Sbjct:   110 TGTGTIP 116

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSD5	TCP20_ARATH	No assigned EC number	0.5382	0.9179	0.9267	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam03634	122	pfam03634, TCP, TCP family transcription factor	3e-39

>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor

 Score =  134 bits (339), Expect = 3e-39
 Identities = 44/97 (45%), Positives = 56/97 (57%)

Query: 63  LAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSII 122
            A K+  +  RHTKV GR RR+R+ A CAAR F L  ELG  S  +TI+WLLQQA+P+II
Sbjct: 1   AAGKKDRHSKRHTKVGGRDRRVRLSAECAARFFDLQDELGFDSPSKTIEWLLQQAKPAII 60

Query: 123 AATGTGTIPASALAAAGGSVSQQGASLTAGLHQKIDD 159
           A TGT T PA   +A   + S +     A       +
Sbjct: 61  ALTGTSTPPAKCSSAKSAAKSSKDPQQAASALNLAKE 97

This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PF03634	138	TCP: TCP family transcription factor; InterPro: IP	100.0
PLN03106	447	TCP2 Protein TCP2; Provisional	99.94
PLN03105	324	TCP24 transcription factor TCP24 (TEOSINTE BRANCHE	99.93

>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]

Probab=100.00  E-value=6.5e-35  Score=239.88  Aligned_cols=68  Identities=31%  Similarity=0.564  Sum_probs=62.9

Q ss_pred             CCCCCcccccc----CCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHHHhcCCCCCCccc
Q 021100           68 SSNKDRHTKVE----GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAL  135 (317)
Q Consensus        68 s~~KDRHSKV~----~RDRRvRLs~~~A~rfF~Lqd~LGfdk~skTIeWLL~qak~AI~~lt~tgtiP~~~~  135 (317)
                      +++||||||||    +||||||||++||++||+||||||||||||||||||++||+||++|+.....|.+.|
T Consensus         2 ~~~kdrhski~Ta~g~RdRRvRLs~~~Ar~FFdLQDmLGfDKaSKTveWLL~kSk~AIkeL~~~~~~~~s~~   73 (138)
T PF03634_consen    2 AGKKDRHSKIHTAQGPRDRRVRLSLEIARKFFDLQDMLGFDKASKTVEWLLTKSKKAIKELTQSSSSSSSEC   73 (138)
T ss_pred             CCCCCCCCccccccCCCCCceecCHHHHHHHHHHHHHhcCCCCCchHHHHHHhCHHHHHHHHHhhccccccc
Confidence            57899999999    999999999999999999999999999999999999999999999998866666444

The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].

>PLN03106 TCP2 Protein TCP2; Provisional

Probab=99.94  E-value=2.8e-27  Score=227.71  Aligned_cols=63  Identities=33%  Similarity=0.568  Sum_probs=60.0

Q ss_pred             CCCCCCCcccccc----CCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHHHhcCC
Q 021100           66 KRSSNKDRHTKVE----GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTG  128 (317)
Q Consensus        66 krs~~KDRHSKV~----~RDRRvRLs~~~A~rfF~Lqd~LGfdk~skTIeWLL~qak~AI~~lt~tg  128 (317)
                      +++++|||||||+    +||||||||++||++||+||||||||||||||||||++||+||+||+...
T Consensus        70 Rasg~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~~l~  136 (447)
T PLN03106         70 RASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLN  136 (447)
T ss_pred             cccCCCCcccceecccCCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhhccc
Confidence            4667999999999    99999999999999999999999999999999999999999999998754

>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

Probab=99.93  E-value=5.6e-27  Score=217.78  Aligned_cols=64  Identities=34%  Similarity=0.551  Sum_probs=60.2

Q ss_pred             CCCCCCCcccccc----CCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHHHhcCCC
Q 021100           66 KRSSNKDRHTKVE----GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGT  129 (317)
Q Consensus        66 krs~~KDRHSKV~----~RDRRvRLs~~~A~rfF~Lqd~LGfdk~skTIeWLL~qak~AI~~lt~tgt  129 (317)
                      +..++|||||||+    +||||||||++||++||+||||||||||||||||||++||+||++|+...+
T Consensus        46 Ra~g~KDRHSKI~TAqGpRDRRvRLSv~iArkFFdLQDmLGFDKaSKTVEWLL~kSk~AI~ELp~l~~  113 (324)
T PLN03105         46 RASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLLNT  113 (324)
T ss_pred             ccCCCCCcccceecccCCcccceecCHHHHHHHhhHHHHhCCCCcchHHHHHHHHhHHHHHhcccCcc
Confidence            4567999999999    999999999999999999999999999999999999999999999987653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00