Citrus Sinensis ID: 021107
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| 224072162 | 462 | predicted protein [Populus trichocarpa] | 1.0 | 0.686 | 0.776 | 1e-150 | |
| 224058361 | 429 | predicted protein [Populus trichocarpa] | 1.0 | 0.738 | 0.776 | 1e-149 | |
| 255537733 | 462 | conserved hypothetical protein [Ricinus | 1.0 | 0.686 | 0.760 | 1e-147 | |
| 359489711 | 450 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.704 | 0.726 | 1e-143 | |
| 297745405 | 420 | unnamed protein product [Vitis vinifera] | 1.0 | 0.754 | 0.726 | 1e-143 | |
| 356513299 | 454 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.698 | 0.712 | 1e-140 | |
| 224127878 | 442 | predicted protein [Populus trichocarpa] | 1.0 | 0.717 | 0.709 | 1e-139 | |
| 356527674 | 452 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.701 | 0.706 | 1e-139 | |
| 224064192 | 441 | predicted protein [Populus trichocarpa] | 1.0 | 0.718 | 0.700 | 1e-139 | |
| 388503372 | 422 | unknown [Medicago truncatula] | 1.0 | 0.751 | 0.720 | 1e-138 |
| >gi|224072162|ref|XP_002303634.1| predicted protein [Populus trichocarpa] gi|222841066|gb|EEE78613.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 246/317 (77%), Positives = 274/317 (86%)
Query: 1 MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLST 60
M NGR DSGYL+WRW P +C+LPPFNA+ FL +MRNK WALIGDSISRNHVQSLLC+LST
Sbjct: 146 MRNGRTDSGYLFWRWNPRDCQLPPFNAQRFLEVMRNKRWALIGDSISRNHVQSLLCILST 205
Query: 61 VEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLD 120
VEQAVEVYHDEEY+SKRWHFPSYNF++S IWSPFL KAAIFED +GVSTSEVQL LDKLD
Sbjct: 206 VEQAVEVYHDEEYKSKRWHFPSYNFTISNIWSPFLVKAAIFEDNDGVSTSEVQLQLDKLD 265
Query: 121 KKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSV 180
WT Y LDYMIISTGKWFLK++IY+ENDTVVGCH CP +N TE GF FAY K L
Sbjct: 266 TNWTNLYQGLDYMIISTGKWFLKAAIYHENDTVVGCHICPGKNFTEKGFVFAYEKALRYA 325
Query: 181 MDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELE 240
M+FIA SKHKGL+FFRTSTPDHFENGEWHNGG+C K P KEG+IELKDLN+ILR +EL
Sbjct: 326 MNFIATSKHKGLIFFRTSTPDHFENGEWHNGGNCTKTTPAKEGEIELKDLNKILRTVELA 385
Query: 241 EFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLP 300
EFEKA +A++NGV LKLLDFTNLLL RPDGHPG YR+F PFA+DK+AKVQNDCLHWCLP
Sbjct: 386 EFEKASAKAAENGVNLKLLDFTNLLLSRPDGHPGPYRQFHPFAQDKNAKVQNDCLHWCLP 445
Query: 301 GPIDTWNDLIMETVVNG 317
GPID WND+IME +NG
Sbjct: 446 GPIDYWNDVIMEMAING 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058361|ref|XP_002299487.1| predicted protein [Populus trichocarpa] gi|222846745|gb|EEE84292.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255537733|ref|XP_002509933.1| conserved hypothetical protein [Ricinus communis] gi|223549832|gb|EEF51320.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359489711|ref|XP_002276755.2| PREDICTED: uncharacterized protein LOC100263682 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297745405|emb|CBI40485.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356513299|ref|XP_003525351.1| PREDICTED: uncharacterized protein LOC100816814 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224127878|ref|XP_002320186.1| predicted protein [Populus trichocarpa] gi|222860959|gb|EEE98501.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356527674|ref|XP_003532433.1| PREDICTED: uncharacterized protein LOC100778581 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224064192|ref|XP_002301401.1| predicted protein [Populus trichocarpa] gi|222843127|gb|EEE80674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|388503372|gb|AFK39752.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| TAIR|locus:2136113 | 432 | TBL23 "AT4G11090" [Arabidopsis | 0.993 | 0.729 | 0.642 | 1.8e-117 | |
| TAIR|locus:2128489 | 430 | TBL24 "AT4G23790" [Arabidopsis | 0.993 | 0.732 | 0.619 | 7.3e-114 | |
| TAIR|locus:2035342 | 456 | TBL25 "AT1G01430" [Arabidopsis | 0.984 | 0.684 | 0.578 | 7.7e-103 | |
| TAIR|locus:2125048 | 442 | TBL26 "AT4G01080" [Arabidopsis | 0.968 | 0.694 | 0.553 | 9.1e-100 | |
| TAIR|locus:2020628 | 416 | TBL27 "TRICHOME BIREFRINGENCE- | 0.936 | 0.713 | 0.421 | 1.9e-67 | |
| TAIR|locus:2146062 | 526 | TBL21 "AT5G15890" [Arabidopsis | 0.949 | 0.572 | 0.417 | 1.9e-67 | |
| TAIR|locus:2146077 | 426 | TBL19 "AT5G15900" [Arabidopsis | 0.952 | 0.708 | 0.384 | 2.6e-63 | |
| TAIR|locus:2091388 | 414 | TBL22 "AT3G28150" [Arabidopsis | 0.958 | 0.734 | 0.369 | 2.7e-59 | |
| TAIR|locus:2153077 | 501 | YLS7 "AT5G51640" [Arabidopsis | 0.971 | 0.614 | 0.361 | 8.9e-54 | |
| TAIR|locus:2138043 | 533 | TBL18 "AT4G25360" [Arabidopsis | 0.974 | 0.579 | 0.344 | 3.1e-51 |
| TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 203/316 (64%), Positives = 250/316 (79%)
Query: 3 NGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVE 62
NGRPDSG+L W+W+P +C LP F++ FL LMRNK+WA+IGDSI+RNHV+SLLCMLSTVE
Sbjct: 113 NGRPDSGFLNWKWKPNDCSLPRFDSLRFLQLMRNKSWAIIGDSIARNHVESLLCMLSTVE 172
Query: 63 QAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKK 122
+ VEVYHDE YRSKRWHFPSYNF+VS IWSPFL +A IFED NGVS++ VQLHLDKLD
Sbjct: 173 KPVEVYHDENYRSKRWHFPSYNFTVSNIWSPFLVQADIFEDSNGVSSAAVQLHLDKLDNT 232
Query: 123 WTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKR-NLTELGFDFAYRKTLSSVM 181
WT+ + +LDY IIS+G+WFLK+++Y+EN VGCH CP+ N+T+LGFD+AY +L VM
Sbjct: 233 WTDLFPSLDYAIISSGEWFLKTAVYHENANPVGCHGCPESSNMTDLGFDYAYNTSLRHVM 292
Query: 182 DFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEE 241
DFIA SK KG++FFRTS PDHFE+GEWHNGG+C+K PV E +E+K LN+ILR++E+ +
Sbjct: 293 DFIAKSKTKGMIFFRTSIPDHFEDGEWHNGGTCKKTEPVGEEAVEMKVLNKILRDVEINQ 352
Query: 242 FEKAVPRASQNGVKXXXXXXXXXXXXRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPG 301
FE+ V Q RPDGHPG YREF+PF KDK+A VQNDCLHWCLPG
Sbjct: 353 FERVVTEMGQESENLKLLDFAGMLLTRPDGHPGPYREFRPFDKDKNATVQNDCLHWCLPG 412
Query: 302 PIDTWNDLIMETVVNG 317
PID ND+I+E +VNG
Sbjct: 413 PIDHLNDVILEIIVNG 428
|
|
| TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2138043 TBL18 "AT4G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 2e-96 | |
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 2e-31 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 8e-07 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 2e-96
Identities = 108/294 (36%), Positives = 153/294 (52%), Gaps = 27/294 (9%)
Query: 22 LPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFP 81
LP F+A+ FL +R K +GDS+SRN +SL+C+LS VE + + R R+ F
Sbjct: 1 LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60
Query: 82 SYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWF 141
YN ++ WSPFL ++ + + L LD +D+KW++ + D ++ ++G W+
Sbjct: 61 DYNVTIEFYWSPFLVES------DNAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWW 114
Query: 142 LKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAA--SKHKGLVFFRTST 199
L +Y G YC K N E+GF AYRK L + ++ K VFFRT +
Sbjct: 115 LHRKVYI------GWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFS 168
Query: 200 PDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLL 259
P HFE GEW+ GGSC + P+ E K L + +I E +A +KLL
Sbjct: 169 PVHFEGGEWNTGGSCYETEPLLG--SEYKGLTPEMIDIVNEVLSRA-----AMKTPVKLL 221
Query: 260 DFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMET 313
D T L R DGHP YR+ P K+ DCLHWCLPG DTWN+L++
Sbjct: 222 DITLLSQYRKDGHPSVYRKPGPPKKE------QDCLHWCLPGVPDTWNELLLAL 269
|
The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 98.71 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 98.17 | |
| COG2845 | 354 | Uncharacterized protein conserved in bacteria [Fun | 86.62 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-98 Score=718.09 Aligned_cols=292 Identities=29% Similarity=0.549 Sum_probs=249.6
Q ss_pred CCCCCCCCCCccceeecCCCCCCCCCHHHHHHHHcCCeeEEEechhhHHHHHHHHHhhcccccceeeeecccCceeeEEe
Q 021107 1 MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHF 80 (317)
Q Consensus 1 ~~nGRpD~~~~~w~W~p~~C~l~~~~~~~~~~~l~~k~i~fvGDS~~r~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~f 80 (317)
++|||||++|++|||||++|+||+|||.+||+.||||+|+||||||+|||||||+|||++++++..+......+.++|+|
T Consensus 85 ~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F 164 (387)
T PLN02629 85 QMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKF 164 (387)
T ss_pred hhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999977655444455567889999
Q ss_pred ccCcEEEEEEeCcccccccccccCCCCccceeEEeccccchhHHhhcCCccEEEEecccccccccccccCCeEeccccC-
Q 021107 81 PSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYC- 159 (317)
Q Consensus 81 ~~~n~tv~f~wsPfLv~~~~~~~~~~~~~~~~~l~lD~~~~~~~~~~~~~DvlV~ntG~Ww~~~~~~~~~~~~~g~~~~- 159 (317)
++||+||+||||||||+.+..+ +...|+||+++. +++.|+++|||||||||||.+++ .+.||.++
T Consensus 165 ~~yN~TV~~ywspfLV~~~~~~-------~~~~l~LD~id~-~a~~w~~~DvlVfntghWw~~~~------~~~~~~~~~ 230 (387)
T PLN02629 165 LDYGVSISFYKAPYLVDIDAVQ-------GKRVLKLEEISG-NANAWRDADVLIFNTGHWWSHQG------SLQGWDYIE 230 (387)
T ss_pred ccCCEEEEEEecceEEeeecCC-------CceeEEecCcch-hhhhhccCCEEEEeCccccCCCC------eeEEeeeec
Confidence 9999999999999999876321 234699999875 68899999999999999999854 34566554
Q ss_pred -CCCcccccchHHHHHHHHHHHHHHHH--hcCCCcEEEEEecCCCCCCCCCCCCCC-----CC-CccccCCCCccccchh
Q 021107 160 -PKRNLTELGFDFAYRKTLSSVMDFIA--ASKHKGLVFFRTSTPDHFENGEWHNGG-----SC-QKMMPVKEGDIELKDL 230 (317)
Q Consensus 160 -~~~~~~~~~~~~ay~~al~t~~~wl~--~~~~~~~vffRt~SP~Hf~~g~W~~gg-----~C-~~t~P~~~~~~~~~~~ 230 (317)
....+++|++.+||++||+||++||+ +++.+++|||||+||+||+||+||+|| +| ++|+|+.+.++ .++.
T Consensus 231 ~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~ 309 (387)
T PLN02629 231 SGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAY 309 (387)
T ss_pred cCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcc
Confidence 23357899999999999999999998 788899999999999999999999875 68 79999986543 3444
Q ss_pred hHHHhhhhHHHHHhhhhccccCCceeEEeecccccccCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCChhhHHHHHH
Q 021107 231 NRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLI 310 (317)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls~~R~DgHps~y~~~~~~~~~~~~~~~~DC~HWCLPGv~D~WNelL 310 (317)
..+|+ +++++.+.++.+|++||||+||++|||||||+|++..+.++++++..++||+|||||||||||||||
T Consensus 310 ~~~~~--------~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL 381 (387)
T PLN02629 310 PDQMR--------VVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLF 381 (387)
T ss_pred hHHHH--------HHHHHHHhcCCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCCCcccccCCCCCccHHHHH
Confidence 44443 2333344567899999999999999999999998765666777778889999999999999999999
Q ss_pred HHHHh
Q 021107 311 METVV 315 (317)
Q Consensus 311 ~~~L~ 315 (317)
|++|+
T Consensus 382 ~a~L~ 386 (387)
T PLN02629 382 YTALF 386 (387)
T ss_pred HHHHh
Confidence 99996
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
| >COG2845 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 59/375 (15%), Positives = 107/375 (28%), Gaps = 123/375 (32%)
Query: 5 RPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTW----ALIGDSISR--------NHVQ 52
R + +L + E P ++ R++ + ++SR +
Sbjct: 88 RINYKFLMSPIKTE-QRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 53 SL-------LC-ML----STVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAI 100
L + +L + V A++V + + K + W
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCK--------MDFKIFWLNL------ 189
Query: 101 FEDYNGVSTSEVQLHLDKL----DKKWT---EQYLNLDYMIISTGKW---FLKSSIYYEN 150
N S V L KL D WT + N+ I S LKS Y
Sbjct: 190 ---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 151 ----DTVVGCHYCPKRNLTEL-GFDFAYRKTL-----SSVMDFIAAS--KHKGLVFFRTS 198
V +N F+ + K L V DF++A+ H L +
Sbjct: 247 LLVLLNV--------QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 199 -TPDHFEN--GEWHNGGSCQ-------KMMPVKEGDI--ELKD-LNRI--LRNIELEEFE 243
TPD ++ ++ + Q P + I ++D L +++ ++
Sbjct: 298 LTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 244 KAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPI 303
+ L +L+ P + + F A + P
Sbjct: 357 TII------ESSLNVLE--------PAEYRKMFDRLSVF--PPSAHI-----------PT 389
Query: 304 DT----WNDLIMETV 314
W D+I V
Sbjct: 390 ILLSLIWFDVIKSDV 404
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| 4h08_A | 200 | Putative hydrolase; GDSL-like lipase/acylhydrolase | 93.81 | |
| 4hf7_A | 209 | Putative acylhydrolase; PF13472 family, structural | 82.09 |
| >4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.4 Score=40.12 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=36.9
Q ss_pred CCccEEEEecccccccccccccCCeEeccccCCCCcccccchHHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 021107 128 LNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHF 203 (317)
Q Consensus 128 ~~~DvlV~ntG~Ww~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ay~~al~t~~~wl~~~~~~~~vffRt~SP~Hf 203 (317)
..+|+||++.|.. .. . ...+.|+..|++.++.+.....+++++|-+..|...
T Consensus 73 ~~pd~Vvi~~G~N----------D~----------~----~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~ 124 (200)
T 4h08_A 73 TKFDVIHFNNGLH----------GF----------D----YTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRT 124 (200)
T ss_dssp SCCSEEEECCCSS----------CT----------T----SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEE
T ss_pred CCCCeEEEEeeeC----------CC----------C----CCHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCcc
Confidence 5689999999853 10 0 023678888888888887445567889988888654
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| >4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
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Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 86.37 | |
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 82.61 |
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein BT2961 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=86.37 E-value=0.12 Score=40.87 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=12.7
Q ss_pred cCCeeEEEechhhH
Q 021107 35 RNKTWALIGDSISR 48 (317)
Q Consensus 35 ~~k~i~fvGDS~~r 48 (317)
.||+|+|+|||++-
T Consensus 7 ~~kkI~~~GDS~T~ 20 (248)
T d3bzwa1 7 QGKKVGYIGDSITD 20 (248)
T ss_dssp TTCEEEEEESTTTC
T ss_pred CCCEEEEEehHHcc
Confidence 68999999999984
|
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
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