Citrus Sinensis ID: 021107


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
ccccccccccccEEEEccccccccccHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccEEEEEEccEEEEEEEEcccccccccEEEEEcccccHHHHHccccccEEEEEccccEEEcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
cccccccccccEEEEcccccccccccHHHHHHHHcccEEEEEcccHcHHHHHHHHHHHHHccccccEEEEccccEEEEEEccccEEEEEEEccEEEEcccccccccccccEEEEEcccccHHHHHHcccccEEEEEccEEEEcccEEEcccEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHcccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHcc
mgngrpdsgylywrwrpencelppfnaeNFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYhdeeyrskrwhfpsynfsvsviwspflakaaifedyngvstsEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKssiyyendtvvgchycpkrnltelGFDFAYRKTLSSVMDFIAASKHKGLVFfrtstpdhfengewhnggscqkmmpvkegdieLKDLNRILRNIELeefekavprasqngvklklldftnllllrpdghpgayrefqpfakdkdakvqndclhwclpgpidtwnDLIMETVVNG
mgngrpdsgylywRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDhfengewhnggscqkmmpVKEGDIELKDLNRILRNIELeefekavprasqngvklKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLpgpidtwnDLIMETVVNG
MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKlklldftnllllRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
********GYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETV***
*GNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQ**********QNDCLHWCLPGPIDTWNDLIMETVVN*
MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
*****PDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiii
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MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPxxxxxxxxxxxxxxxxxxxxxEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMETVVNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
224072162 462 predicted protein [Populus trichocarpa] 1.0 0.686 0.776 1e-150
224058361 429 predicted protein [Populus trichocarpa] 1.0 0.738 0.776 1e-149
255537733 462 conserved hypothetical protein [Ricinus 1.0 0.686 0.760 1e-147
359489711 450 PREDICTED: uncharacterized protein LOC10 1.0 0.704 0.726 1e-143
297745405 420 unnamed protein product [Vitis vinifera] 1.0 0.754 0.726 1e-143
356513299 454 PREDICTED: uncharacterized protein LOC10 1.0 0.698 0.712 1e-140
224127878 442 predicted protein [Populus trichocarpa] 1.0 0.717 0.709 1e-139
356527674 452 PREDICTED: uncharacterized protein LOC10 1.0 0.701 0.706 1e-139
224064192 441 predicted protein [Populus trichocarpa] 1.0 0.718 0.700 1e-139
388503372 422 unknown [Medicago truncatula] 1.0 0.751 0.720 1e-138
>gi|224072162|ref|XP_002303634.1| predicted protein [Populus trichocarpa] gi|222841066|gb|EEE78613.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 246/317 (77%), Positives = 274/317 (86%)

Query: 1   MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLST 60
           M NGR DSGYL+WRW P +C+LPPFNA+ FL +MRNK WALIGDSISRNHVQSLLC+LST
Sbjct: 146 MRNGRTDSGYLFWRWNPRDCQLPPFNAQRFLEVMRNKRWALIGDSISRNHVQSLLCILST 205

Query: 61  VEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLD 120
           VEQAVEVYHDEEY+SKRWHFPSYNF++S IWSPFL KAAIFED +GVSTSEVQL LDKLD
Sbjct: 206 VEQAVEVYHDEEYKSKRWHFPSYNFTISNIWSPFLVKAAIFEDNDGVSTSEVQLQLDKLD 265

Query: 121 KKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSV 180
             WT  Y  LDYMIISTGKWFLK++IY+ENDTVVGCH CP +N TE GF FAY K L   
Sbjct: 266 TNWTNLYQGLDYMIISTGKWFLKAAIYHENDTVVGCHICPGKNFTEKGFVFAYEKALRYA 325

Query: 181 MDFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELE 240
           M+FIA SKHKGL+FFRTSTPDHFENGEWHNGG+C K  P KEG+IELKDLN+ILR +EL 
Sbjct: 326 MNFIATSKHKGLIFFRTSTPDHFENGEWHNGGNCTKTTPAKEGEIELKDLNKILRTVELA 385

Query: 241 EFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLP 300
           EFEKA  +A++NGV LKLLDFTNLLL RPDGHPG YR+F PFA+DK+AKVQNDCLHWCLP
Sbjct: 386 EFEKASAKAAENGVNLKLLDFTNLLLSRPDGHPGPYRQFHPFAQDKNAKVQNDCLHWCLP 445

Query: 301 GPIDTWNDLIMETVVNG 317
           GPID WND+IME  +NG
Sbjct: 446 GPIDYWNDVIMEMAING 462




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058361|ref|XP_002299487.1| predicted protein [Populus trichocarpa] gi|222846745|gb|EEE84292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255537733|ref|XP_002509933.1| conserved hypothetical protein [Ricinus communis] gi|223549832|gb|EEF51320.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359489711|ref|XP_002276755.2| PREDICTED: uncharacterized protein LOC100263682 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745405|emb|CBI40485.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513299|ref|XP_003525351.1| PREDICTED: uncharacterized protein LOC100816814 [Glycine max] Back     alignment and taxonomy information
>gi|224127878|ref|XP_002320186.1| predicted protein [Populus trichocarpa] gi|222860959|gb|EEE98501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527674|ref|XP_003532433.1| PREDICTED: uncharacterized protein LOC100778581 [Glycine max] Back     alignment and taxonomy information
>gi|224064192|ref|XP_002301401.1| predicted protein [Populus trichocarpa] gi|222843127|gb|EEE80674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388503372|gb|AFK39752.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
TAIR|locus:2136113432 TBL23 "AT4G11090" [Arabidopsis 0.993 0.729 0.642 1.8e-117
TAIR|locus:2128489430 TBL24 "AT4G23790" [Arabidopsis 0.993 0.732 0.619 7.3e-114
TAIR|locus:2035342456 TBL25 "AT1G01430" [Arabidopsis 0.984 0.684 0.578 7.7e-103
TAIR|locus:2125048442 TBL26 "AT4G01080" [Arabidopsis 0.968 0.694 0.553 9.1e-100
TAIR|locus:2020628416 TBL27 "TRICHOME BIREFRINGENCE- 0.936 0.713 0.421 1.9e-67
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.949 0.572 0.417 1.9e-67
TAIR|locus:2146077426 TBL19 "AT5G15900" [Arabidopsis 0.952 0.708 0.384 2.6e-63
TAIR|locus:2091388414 TBL22 "AT3G28150" [Arabidopsis 0.958 0.734 0.369 2.7e-59
TAIR|locus:2153077501 YLS7 "AT5G51640" [Arabidopsis 0.971 0.614 0.361 8.9e-54
TAIR|locus:2138043533 TBL18 "AT4G25360" [Arabidopsis 0.974 0.579 0.344 3.1e-51
TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 203/316 (64%), Positives = 250/316 (79%)

Query:     3 NGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVE 62
             NGRPDSG+L W+W+P +C LP F++  FL LMRNK+WA+IGDSI+RNHV+SLLCMLSTVE
Sbjct:   113 NGRPDSGFLNWKWKPNDCSLPRFDSLRFLQLMRNKSWAIIGDSIARNHVESLLCMLSTVE 172

Query:    63 QAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKK 122
             + VEVYHDE YRSKRWHFPSYNF+VS IWSPFL +A IFED NGVS++ VQLHLDKLD  
Sbjct:   173 KPVEVYHDENYRSKRWHFPSYNFTVSNIWSPFLVQADIFEDSNGVSSAAVQLHLDKLDNT 232

Query:   123 WTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKR-NLTELGFDFAYRKTLSSVM 181
             WT+ + +LDY IIS+G+WFLK+++Y+EN   VGCH CP+  N+T+LGFD+AY  +L  VM
Sbjct:   233 WTDLFPSLDYAIISSGEWFLKTAVYHENANPVGCHGCPESSNMTDLGFDYAYNTSLRHVM 292

Query:   182 DFIAASKHKGLVFFRTSTPDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEE 241
             DFIA SK KG++FFRTS PDHFE+GEWHNGG+C+K  PV E  +E+K LN+ILR++E+ +
Sbjct:   293 DFIAKSKTKGMIFFRTSIPDHFEDGEWHNGGTCKKTEPVGEEAVEMKVLNKILRDVEINQ 352

Query:   242 FEKAVPRASQNGVKXXXXXXXXXXXXRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPG 301
             FE+ V    Q                RPDGHPG YREF+PF KDK+A VQNDCLHWCLPG
Sbjct:   353 FERVVTEMGQESENLKLLDFAGMLLTRPDGHPGPYREFRPFDKDKNATVQNDCLHWCLPG 412

Query:   302 PIDTWNDLIMETVVNG 317
             PID  ND+I+E +VNG
Sbjct:   413 PIDHLNDVILEIIVNG 428




GO:0008150 "biological_process" evidence=ND
TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138043 TBL18 "AT4G25360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 2e-96
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 2e-31
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 8e-07
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  285 bits (731), Expect = 2e-96
 Identities = 108/294 (36%), Positives = 153/294 (52%), Gaps = 27/294 (9%)

Query: 22  LPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHFP 81
           LP F+A+ FL  +R K    +GDS+SRN  +SL+C+LS VE       + + R  R+ F 
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60

Query: 82  SYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWF 141
            YN ++   WSPFL ++      +     +  L LD +D+KW++ +   D ++ ++G W+
Sbjct: 61  DYNVTIEFYWSPFLVES------DNAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWW 114

Query: 142 LKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAA--SKHKGLVFFRTST 199
           L   +Y       G  YC K N  E+GF  AYRK L +   ++       K  VFFRT +
Sbjct: 115 LHRKVYI------GWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFS 168

Query: 200 PDHFENGEWHNGGSCQKMMPVKEGDIELKDLNRILRNIELEEFEKAVPRASQNGVKLKLL 259
           P HFE GEW+ GGSC +  P+     E K L   + +I  E   +A          +KLL
Sbjct: 169 PVHFEGGEWNTGGSCYETEPLLG--SEYKGLTPEMIDIVNEVLSRA-----AMKTPVKLL 221

Query: 260 DFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLIMET 313
           D T L   R DGHP  YR+  P  K+       DCLHWCLPG  DTWN+L++  
Sbjct: 222 DITLLSQYRKDGHPSVYRKPGPPKKE------QDCLHWCLPGVPDTWNELLLAL 269


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 98.71
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 98.17
COG2845354 Uncharacterized protein conserved in bacteria [Fun 86.62
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=4.9e-98  Score=718.09  Aligned_cols=292  Identities=29%  Similarity=0.549  Sum_probs=249.6

Q ss_pred             CCCCCCCCCCccceeecCCCCCCCCCHHHHHHHHcCCeeEEEechhhHHHHHHHHHhhcccccceeeeecccCceeeEEe
Q 021107            1 MGNGRPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTWALIGDSISRNHVQSLLCMLSTVEQAVEVYHDEEYRSKRWHF   80 (317)
Q Consensus         1 ~~nGRpD~~~~~w~W~p~~C~l~~~~~~~~~~~l~~k~i~fvGDS~~r~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~f   80 (317)
                      ++|||||++|++|||||++|+||+|||.+||+.||||+|+||||||+|||||||+|||++++++..+......+.++|+|
T Consensus        85 ~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F  164 (387)
T PLN02629         85 QMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKF  164 (387)
T ss_pred             hhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999977655444455567889999


Q ss_pred             ccCcEEEEEEeCcccccccccccCCCCccceeEEeccccchhHHhhcCCccEEEEecccccccccccccCCeEeccccC-
Q 021107           81 PSYNFSVSVIWSPFLAKAAIFEDYNGVSTSEVQLHLDKLDKKWTEQYLNLDYMIISTGKWFLKSSIYYENDTVVGCHYC-  159 (317)
Q Consensus        81 ~~~n~tv~f~wsPfLv~~~~~~~~~~~~~~~~~l~lD~~~~~~~~~~~~~DvlV~ntG~Ww~~~~~~~~~~~~~g~~~~-  159 (317)
                      ++||+||+||||||||+.+..+       +...|+||+++. +++.|+++|||||||||||.+++      .+.||.++ 
T Consensus       165 ~~yN~TV~~ywspfLV~~~~~~-------~~~~l~LD~id~-~a~~w~~~DvlVfntghWw~~~~------~~~~~~~~~  230 (387)
T PLN02629        165 LDYGVSISFYKAPYLVDIDAVQ-------GKRVLKLEEISG-NANAWRDADVLIFNTGHWWSHQG------SLQGWDYIE  230 (387)
T ss_pred             ccCCEEEEEEecceEEeeecCC-------CceeEEecCcch-hhhhhccCCEEEEeCccccCCCC------eeEEeeeec
Confidence            9999999999999999876321       234699999875 68899999999999999999854      34566554 


Q ss_pred             -CCCcccccchHHHHHHHHHHHHHHHH--hcCCCcEEEEEecCCCCCCCCCCCCCC-----CC-CccccCCCCccccchh
Q 021107          160 -PKRNLTELGFDFAYRKTLSSVMDFIA--ASKHKGLVFFRTSTPDHFENGEWHNGG-----SC-QKMMPVKEGDIELKDL  230 (317)
Q Consensus       160 -~~~~~~~~~~~~ay~~al~t~~~wl~--~~~~~~~vffRt~SP~Hf~~g~W~~gg-----~C-~~t~P~~~~~~~~~~~  230 (317)
                       ....+++|++.+||++||+||++||+  +++.+++|||||+||+||+||+||+||     +| ++|+|+.+.++ .++.
T Consensus       231 ~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~  309 (387)
T PLN02629        231 SGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAY  309 (387)
T ss_pred             cCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcc
Confidence             23357899999999999999999998  788899999999999999999999875     68 79999986543 3444


Q ss_pred             hHHHhhhhHHHHHhhhhccccCCceeEEeecccccccCCCCCCCCCCCCCCcccCCCCCCCCCcccccCCChhhHHHHHH
Q 021107          231 NRILRNIELEEFEKAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPIDTWNDLI  310 (317)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdIt~ls~~R~DgHps~y~~~~~~~~~~~~~~~~DC~HWCLPGv~D~WNelL  310 (317)
                      ..+|+        +++++.+.++.+|++||||+||++|||||||+|++..+.++++++..++||+|||||||||||||||
T Consensus       310 ~~~~~--------~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL  381 (387)
T PLN02629        310 PDQMR--------VVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLF  381 (387)
T ss_pred             hHHHH--------HHHHHHHhcCCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCCCcccccCCCCCccHHHHH
Confidence            44443        2333344567899999999999999999999998765666777778889999999999999999999


Q ss_pred             HHHHh
Q 021107          311 METVV  315 (317)
Q Consensus       311 ~~~L~  315 (317)
                      |++|+
T Consensus       382 ~a~L~  386 (387)
T PLN02629        382 YTALF  386 (387)
T ss_pred             HHHHh
Confidence            99996



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 59/375 (15%), Positives = 107/375 (28%), Gaps = 123/375 (32%)

Query: 5   RPDSGYLYWRWRPENCELPPFNAENFLYLMRNKTW----ALIGDSISR--------NHVQ 52
           R +  +L    + E    P      ++   R++ +         ++SR          + 
Sbjct: 88  RINYKFLMSPIKTE-QRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 53  SL-------LC-ML----STVEQAVEVYHDEEYRSKRWHFPSYNFSVSVIWSPFLAKAAI 100
            L       +  +L    + V  A++V    + + K            + W         
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCK--------MDFKIFWLNL------ 189

Query: 101 FEDYNGVSTSEVQLHLDKL----DKKWT---EQYLNLDYMIISTGKW---FLKSSIYYEN 150
               N  S   V   L KL    D  WT   +   N+   I S        LKS  Y   
Sbjct: 190 ---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 151 ----DTVVGCHYCPKRNLTEL-GFDFAYRKTL-----SSVMDFIAAS--KHKGLVFFRTS 198
                 V        +N      F+ +  K L       V DF++A+   H  L     +
Sbjct: 247 LLVLLNV--------QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 199 -TPDHFEN--GEWHNGGSCQ-------KMMPVKEGDI--ELKD-LNRI--LRNIELEEFE 243
            TPD  ++   ++ +    Q          P +   I   ++D L      +++  ++  
Sbjct: 298 LTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 244 KAVPRASQNGVKLKLLDFTNLLLLRPDGHPGAYREFQPFAKDKDAKVQNDCLHWCLPGPI 303
             +         L +L+        P  +   +     F     A +           P 
Sbjct: 357 TII------ESSLNVLE--------PAEYRKMFDRLSVF--PPSAHI-----------PT 389

Query: 304 DT----WNDLIMETV 314
                 W D+I   V
Sbjct: 390 ILLSLIWFDVIKSDV 404


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 93.81
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 82.09
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=93.81  E-value=0.4  Score=40.12  Aligned_cols=52  Identities=15%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             CCccEEEEecccccccccccccCCeEeccccCCCCcccccchHHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 021107          128 LNLDYMIISTGKWFLKSSIYYENDTVVGCHYCPKRNLTELGFDFAYRKTLSSVMDFIAASKHKGLVFFRTSTPDHF  203 (317)
Q Consensus       128 ~~~DvlV~ntG~Ww~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ay~~al~t~~~wl~~~~~~~~vffRt~SP~Hf  203 (317)
                      ..+|+||++.|..          ..          .    ...+.|+..|++.++.+.....+++++|-+..|...
T Consensus        73 ~~pd~Vvi~~G~N----------D~----------~----~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~  124 (200)
T 4h08_A           73 TKFDVIHFNNGLH----------GF----------D----YTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRT  124 (200)
T ss_dssp             SCCSEEEECCCSS----------CT----------T----SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEE
T ss_pred             CCCCeEEEEeeeC----------CC----------C----CCHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCcc
Confidence            5689999999853          10          0    023678888888888887445567889988888654



>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 86.37
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 82.61
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein BT2961
species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=86.37  E-value=0.12  Score=40.87  Aligned_cols=14  Identities=43%  Similarity=0.615  Sum_probs=12.7

Q ss_pred             cCCeeEEEechhhH
Q 021107           35 RNKTWALIGDSISR   48 (317)
Q Consensus        35 ~~k~i~fvGDS~~r   48 (317)
                      .||+|+|+|||++-
T Consensus         7 ~~kkI~~~GDS~T~   20 (248)
T d3bzwa1           7 QGKKVGYIGDSITD   20 (248)
T ss_dssp             TTCEEEEEESTTTC
T ss_pred             CCCEEEEEehHHcc
Confidence            68999999999984



>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure