Citrus Sinensis ID: 021142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MSNESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSPQEFDPSQMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLLIPNSSISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccc
Coil and Loop (DISEMBL)
MSNESRDIYYRALfqpnvnieaaarpgvsvaasssspdyvspqefdpsqmnftdcfhglmdynslekaftgmspsssevfssvegnqkqvkdllipnssissssaeaggeedshsgkstqkddqalqspkdhghggesskKMSREKKnnkkgekkqkeprvafmtksevdhledgyrwrkygqkavknspfprsyyrcttqkcgvkkrversyedpsivittyegqhshplpttlrgnaagifqsssmltptpmnvssfppdqwlgysnmmpamthnqtaapgpnafvthplddhqlpdnfgllqdiapsvffkrep
Flexible Loop (DISEMBL)
MSNESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSPQEFDPSQMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLLIPNSSISSSSAEAGGEEDshsgkstqkddqalqspkdhghggesskkmsrekknnkkgekkqkeprvafmtksevdhledgyrwrkygqkavknspfprsyyrcttqkcgvkkrversyEDPSIVIttyegqhshplPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP
Low Complexity Region (SEG)
MSNESRDIYYRALFQPNVNIEaaarpgvsvaasssspdyvspQEFDPSQMNFTDCFHGLMDYNSLEKAFTGMspsssevfssveGNQKQVKDLLIPNssissssaeaggeedshsgKSTQKDDQALQSPKDHGHggesskkmsrekknnkkgekkqkePRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP
Disordered region (IsUnstruct)
*******IYYRALFQPNVNIE*****************************NFTDCFHGLMDYNSL********************************************************************************************************DHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEG**************************************WLG********************FVTH*L**HQLPDNFGLLQDIAPSVF*****
Disordered Region (DISOPRED)
******D**YRALF****************************************************************************************************************************************************FMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHP****************************************************************************I**********
Disordered Region (DISEMBL)
MSNESRDIYYRALFQPNVNIEAAAR****************PQEFDPSQMNFTDCFHGLMDYNSLEKAFT***************NQKQVKDLLIPNSSI***********************************************************RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP
Disordered Region (DISPRO)
*****RDIYYRALFQPNVNIEAAARPGVS*******************************************************************************************************************************KEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQH***************************************************************************LLQDIAPSVF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSPQEFDPSQMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLLIPNSSISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q8VWJ2	318	Probable WRKY transcripti	yes	no	0.943	0.940	0.434	3e-54
Q93WV4	282	Probable WRKY transcripti	no	no	0.779	0.875	0.458	2e-46
Q9FL26	326	Probable WRKY transcripti	no	no	0.728	0.708	0.415	1e-41
O22900	337	Probable WRKY transcripti	no	no	0.542	0.510	0.472	8e-40
Q9C983	287	Probable WRKY transcripti	no	no	0.261	0.289	0.783	6e-35
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.271	0.215	0.732	7e-35
Q93WV6	277	Probable WRKY transcripti	no	no	0.495	0.566	0.436	2e-31
Q9SVB7	304	Probable WRKY transcripti	no	no	0.302	0.315	0.604	4e-27
Q9C5T3	309	Probable WRKY transcripti	no	no	0.388	0.398	0.450	1e-26
Q93WY4	218	Probable WRKY transcripti	no	no	0.309	0.449	0.591	1e-26

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 146/336 (43%), Positives = 198/336 (58%), Gaps = 37/336 (11%)

Query: 1   MSNESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSPQEFDPSQMNFTDCFHGL- 59
           MSNE+RD+Y    +Q   +        +  +  SS  +  S   F+PS  +FTDC     
Sbjct: 1   MSNETRDLYN---YQYPSSFSLHEMMNLPTSNPSSYGNLPSQNGFNPSTYSFTDCLQSSP 57

Query: 60  MDYNSLEKAFTGMSPSSSEVFSSV---EGNQKQVKDLL-----------IPNSSISSSSA 105
             Y SL +   G+SPSSSEVF+S    E N+    D++           +  S+ SSS A
Sbjct: 58  AAYESLLQKTFGLSPSSSEVFNSSIDQEPNRDVTNDVINGGACNETETRVSPSNSSSSEA 117

Query: 106 EAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMT 165
           +  GE+   SGKS +K +         G   + SKK+ + KK   K   KQ+EPRV+FMT
Sbjct: 118 DHPGED---SGKSRRKRELV-------GEEDQISKKVGKTKKTEVK---KQREPRVSFMT 164

Query: 166 KSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEG 225
           KSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DP++VITTYEG
Sbjct: 165 KSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEG 224

Query: 226 QHSHPLPTTLRGNAAGIFQSSS-MLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGP 284
           QH+HP+PT LRG++A     S+ ++TP       F    +    ++  A+ +    + G 
Sbjct: 225 QHNHPIPTNLRGSSAAAAMFSADLMTPRSFAHDMFRTAAYTNGGSVAAALDYGYGQS-GY 283

Query: 285 NAFVTHPLDDHQLPDNFG---LLQDIAPSVFFKREP 317
            +  ++P   HQ+    G   LL++I PS+FFK+EP
Sbjct: 284 GSVNSNP-SSHQVYHQGGEYELLREIFPSIFFKQEP 318

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/279 (45%), Positives = 169/279 (60%), Gaps = 32/279 (11%)

Query: 52  FTDCFHG--LMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLLIPNSSISSSSAEAGG 109
            +DC     +MDYNSLEK F   SP SS  F SV  +       L  NS + SSS+  G 
Sbjct: 21  LSDCLQSSLVMDYNSLEKVFK-FSPYSSP-FQSVSPSVNNPYLNLTSNSPVVSSSSNEGE 78

Query: 110 EEDSHSGKSTQKDDQALQSPKDHGHG-GESSKKMSREKKNNKKGEKKQKEPRVAFMTKSE 168
            +++ + KS Q +D      +   HG GESSK+++++ K   +  KK++E RVAFMTKSE
Sbjct: 79  PKENTNDKSDQMEDN-----EGDLHGVGESSKQLTKQGKKKGE--KKEREVRVAFMTKSE 131

Query: 169 VDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHS 228
           +DHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DPSIVITTYEG+H+
Sbjct: 132 IDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHN 191

Query: 229 HPLPTTLRGNAAGIFQ------SSSMLTPTPMNVSSF-----PPDQWLGYSNMMPAMTHN 277
           HP+P+TLRG  A            S+L   P +   F      P  +    ++     H 
Sbjct: 192 HPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKHSPANYQSVGSLSYEHGHG 251

Query: 278 QTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKRE 316
            ++         +  +++Q   ++GLLQDI PS+F K E
Sbjct: 252 TSS---------YNFNNNQPVVDYGLLQDIVPSMFSKNE 281

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL26|WRKY8_ARATH Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/272 (41%), Positives = 147/272 (54%), Gaps = 41/272 (15%)

Query: 72  MSPSSSEVFSSVEGNQKQVKDLLIPNSSISSSSAEAGGEEDSHSGKSTQKDDQALQSPKD 131
           +SPSSS+ F+     +  + +    NSS    S E  G+  +      +       S  D
Sbjct: 70  LSPSSSDFFNPSLDQENGLYNAYNYNSS--QKSHEVVGDGCATIKSEVRVSASPSSSEAD 127

Query: 132 HGHGGESSKKMSREKKNNKKGEKKQKE---------------PRVAFMTKSEVDHLEDGY 176
           H H GE S K+ ++++    GE  Q+                PRV+FMTK+EVDHLEDGY
Sbjct: 128 H-HPGEDSGKIRKKREVRDGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTKTEVDHLEDGY 186

Query: 177 RWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLR 236
           RWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERSY+DP++VITTYE QH+HP+PT  R
Sbjct: 187 RWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNHPIPTNRR 246

Query: 237 -----GNAAGIFQSSS------MLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAAPGPN 285
                G  A  +  SS      ++  TP    SF  D        +P  + N        
Sbjct: 247 TAMFSGTTASDYNPSSSPIFSDLIINTPR---SFSNDDLF----RVPYASVNVNP----- 294

Query: 286 AFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
           ++       HQ    F LL+++ PSVFFK+EP
Sbjct: 295 SYHQQQHGFHQQESEFELLKEMFPSVFFKQEP 326

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 115/201 (57%), Gaps = 29/201 (14%)

Query: 139 SKKMSREKKNNKKGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRC 198
           +KK  + KKNN   +K+Q+E RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRC
Sbjct: 143 TKKQLKAKKNN---QKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRC 199

Query: 199 TTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLR-GNAAGIFQSSSMLTPTPMNVS 257
           TT  C VKKRVERS+ DPS V+TTYEGQH+H  P T R  +  G F SS   +       
Sbjct: 200 TTASCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCF 259

Query: 258 SFPPDQWLGYSNMMPAMTHN------------QTAAPGPNAFVTHPLDDH---------- 295
            FP D   G + + P                  +   G N ++    +++          
Sbjct: 260 GFPID---GSTLISPQFQQLVQYHHQQQQQELMSCFGGVNEYLNSHANEYGDDNRVKKSR 316

Query: 296 QLPDNFGLLQDIAPSVFFKRE 316
            L  + GLLQD+ PS   K E
Sbjct: 317 VLVKDNGLLQDVVPSHMLKEE 337

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 73/83 (87%)

Query: 147 KNNKKGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVK 206
           K  KK +K+ ++PR AFMTKS+VD+LEDGYRWRKYGQKAVKNSPFPRSYYRCT  +C VK
Sbjct: 121 KEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVK 180

Query: 207 KRVERSYEDPSIVITTYEGQHSH 229
           KRVERS +DPSIVITTYEGQH H
Sbjct: 181 KRVERSSDDPSIVITTYEGQHCH 203

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 75/86 (87%)

Query: 157 KEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDP 216
           +E R AF+TKS++D+L+DGYRWRKYGQKAVKNSP+PRSYYRCTT  CGVKKRVERS +DP
Sbjct: 205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query: 217 SIVITTYEGQHSHPLPTTLRGNAAGI 242
           SIV+TTYEGQH+HP P T RG+   +
Sbjct: 265 SIVMTTYEGQHTHPFPMTPRGHIGML 290

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV6|WRK68_ARATH Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 105/190 (55%), Gaps = 33/190 (17%)

Query: 151 KGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVE 210
           + + K+K P+V+F+T+SEV HL+DGY+WRKYGQK VK+SPFPR+YYRCTT  C VKKRVE
Sbjct: 96  RKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVE 155

Query: 211 RSYEDPSIVITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNM 270
           RS+ DPS VITTYEGQH+HP P  +     G   S+   +   + + + PP Q L Y+N 
Sbjct: 156 RSFSDPSSVITTYEGQHTHPRPLLIMPK-EGSSPSNGSASRAHIGLPTLPP-QLLDYNN- 212

Query: 271 MPAMTHNQTAAP-------------GPNAFVTHP-----------LDDHQLPDNFGLLQD 306
                  Q  AP             G N                 LD   L  + GLLQD
Sbjct: 213 ------QQQQAPSSFGTEYINRQEKGINHDDDDDHVVKKSRTRDLLDGAGLVKDHGLLQD 266

Query: 307 IAPSVFFKRE 316
           + PS   K E
Sbjct: 267 VVPSHIIKEE 276

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 66/96 (68%)

Query: 134 HGGESSKKMSREKKNNKKGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPR 193
           H   S   +S  K    K  +K +EPR  F T SEVD L+DGYRWRKYGQK VKN+  PR
Sbjct: 184 HNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPR 243

Query: 194 SYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSH 229
           SYYRCT  KC VKKRVER  +DP +VITTYEG+H H
Sbjct: 244 SYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 82/142 (57%), Gaps = 19/142 (13%)

Query: 96  PNSSISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKK 155
           P S+  SSS      ++S +G             KD G     +K+  RE+         
Sbjct: 176 PQSTKRSSSTAIAAHQNSSNGDG-----------KDIGEDETEAKRWKREEN-------- 216

Query: 156 QKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYED 215
            KEPRV   T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+++D
Sbjct: 217 VKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQD 276

Query: 216 PSIVITTYEGQHSHPLPTTLRG 237
           P  VITTYEG+H H +PT  RG
Sbjct: 277 PKSVITTYEGKHKHQIPTPRRG 298

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 68/98 (69%)

Query: 132 HGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPF 191
           H +    S   S + KN  K  +K +EPR  F TKS+VD L+DGY+WRKYGQK VKNS  
Sbjct: 104 HSNSWWRSNSGSGDMKNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLH 163

Query: 192 PRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSH 229
           PRSYYRCT   C VKKRVER  ED  +VITTYEG+H+H
Sbjct: 164 PRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
147791794	339	hypothetical protein VITISV_042733 [Viti	0.930	0.870	0.519	2e-69
225463412	319	PREDICTED: probable WRKY transcription f	0.930	0.924	0.519	3e-69
224106888	306	predicted protein [Populus trichocarpa]	0.911	0.944	0.547	3e-68
255557405	310	WRKY transcription factor, putative [Ric	0.917	0.938	0.546	3e-65
259121423	313	WRKY transcription factor 29 [(Populus t	0.936	0.948	0.540	4e-65
388324557	311	WRKY71 [Vitis amurensis]	0.791	0.807	0.548	3e-62
225446835	311	PREDICTED: probable WRKY transcription f	0.791	0.807	0.544	8e-62
356510776	358	PREDICTED: probable WRKY transcription f	0.955	0.846	0.506	3e-58
206574960	312	WRKY28-1 transcription factor [Brassica	0.965	0.980	0.429	6e-58
356528110	371	PREDICTED: probable WRKY transcription f	0.946	0.808	0.481	2e-54

>gi|147791794|emb|CAN72742.1| hypothetical protein VITISV_042733 [Vitis vinifera]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 177/341 (51%), Positives = 207/341 (60%), Gaps = 46/341 (13%)

Query: 1   MSNESRDIYYRALFQP-------NVNIEAAA----RPGVSVAASSSSPDYVSPQEFDPSQ 49
           MS+E RD+YY   F         N     +A    +   S+ A+ S P+    Q FDP  
Sbjct: 21  MSDEPRDLYYHDPFHDDRHGIIGNTGFSFSAINDSKADSSMRAAPSPPNL---QGFDPPY 77

Query: 50  MNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLL----------IPNSS 99
           M+FTDC +G +DYNSL  AF G+SPSSSE FS VEGN K V +L            PNSS
Sbjct: 78  MSFTDCLNGSLDYNSLTTAF-GLSPSSSEAFSPVEGNHKPVANLGDLGASGEIAGTPNSS 136

Query: 100 ISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEP 159
           ISSSS EAG EEDS   K   KD QA  S  D G G +   K        KK EK+Q+EP
Sbjct: 137 ISSSSTEAGAEEDSSKSK---KDRQAKVSELDGGDGSKKVNKPK------KKAEKRQREP 187

Query: 160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
           R AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKC VKKRVERS++DPS V
Sbjct: 188 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSTV 247

Query: 220 ITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQT 279
           ITTYEGQH+H +P TLRGNA G+    S+LTP  M    FP + +   ++ M     N  
Sbjct: 248 ITTYEGQHNHQIPVTLRGNAGGML-PPSVLTPGQMGGPGFPQELFFQMASPM-----NNL 301

Query: 280 AAPG---PNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
           +A G   P      P    Q  D +GLLQD+ PS+  K+EP
Sbjct: 302 SAAGSFYPQGLT--PFQQLQFHD-YGLLQDVVPSMIHKQEP 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463412|ref|XP_002272089.1| PREDICTED: probable WRKY transcription factor 28 [Vitis vinifera] gi|297740645|emb|CBI30827.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 177/341 (51%), Positives = 207/341 (60%), Gaps = 46/341 (13%)

Query: 1   MSNESRDIYYRALFQP-------NVNIEAAA----RPGVSVAASSSSPDYVSPQEFDPSQ 49
           MS+E RD+YY   F         N     +A    +   S+ A+ S P+    Q FDP  
Sbjct: 1   MSDEPRDLYYHDPFHDDRHGIIGNTGFSFSAINDSKADSSMRAAPSPPNL---QGFDPPY 57

Query: 50  MNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLL----------IPNSS 99
           M+FTDC +G +DYNSL  AF G+SPSSSE FS VEGN K V +L            PNSS
Sbjct: 58  MSFTDCLNGSLDYNSLTTAF-GLSPSSSEAFSPVEGNHKPVANLGDLGASGEIAGTPNSS 116

Query: 100 ISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEP 159
           ISSSS EAG EEDS   K   KD QA  S  D G G +   K        KK EK+Q+EP
Sbjct: 117 ISSSSTEAGAEEDSSKSK---KDRQAKVSELDGGDGSKKVNKPK------KKAEKRQREP 167

Query: 160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
           R AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKC VKKRVERS++DPS V
Sbjct: 168 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCTVKKRVERSFQDPSTV 227

Query: 220 ITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQT 279
           ITTYEGQH+H +P TLRGNA G+    S+LTP  M    FP + +   ++ M     N  
Sbjct: 228 ITTYEGQHNHQIPVTLRGNAGGML-PPSVLTPGQMGGPGFPQELFFQMASPM-----NNL 281

Query: 280 AAPG---PNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
           +A G   P      P    Q  D +GLLQD+ PS+  K+EP
Sbjct: 282 SAAGSFYPQGLT--PFQQLQFHD-YGLLQDVVPSMIHKQEP 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106888|ref|XP_002333616.1| predicted protein [Populus trichocarpa] gi|222837568|gb|EEE75933.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 183/334 (54%), Positives = 232/334 (69%), Gaps = 45/334 (13%)

Query: 1   MSNESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSP-QEFDPS-QMNFTDCFHG 58
           MSNE RD+Y    FQ +       +P +S+  SS+   Y SP Q FDPS  M+F++C HG
Sbjct: 1   MSNEHRDLYCHTPFQED---HLGVKP-LSILDSST---YNSPGQGFDPSPYMSFSECLHG 53

Query: 59  LMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKDLLI------------PNSSISSSSAE 106
            +D+NSL KAF G+SPSSSEVFSS+EGN K ++  ++            PNSS+S SS+E
Sbjct: 54  SLDFNSLAKAF-GLSPSSSEVFSSIEGNSKPMEAGVLGCGNSTDQIPATPNSSLSFSSSE 112

Query: 107 AGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTK 166
           AGG+EDS  GK T+K+ Q    P+D   GGE S K  + KK     E+++KEPR AFMTK
Sbjct: 113 AGGDEDS--GK-TKKETQP-SRPED---GGECSDKKDKAKKKA---EQRKKEPRFAFMTK 162

Query: 167 SEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQ 226
           SEVDHLEDGYRWRKYGQKAV+NSP+PRSYYRCTTQKC VKKRVERS++DPSIVITTYEGQ
Sbjct: 163 SEVDHLEDGYRWRKYGQKAVRNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQ 222

Query: 227 HSHPLPTTLRGNAAGIFQSSSMLTPTPMNVS--SFPPDQWLGYSNM-MPAMTHNQTAAPG 283
           H+HP+PTT+RG+A+ +F S SMLTP P+      F P    GY+ + MPA T N+     
Sbjct: 223 HNHPIPTTIRGSASAMF-SHSMLTPAPLATGPRRF-PAHLQGYNLVQMPAATSNKNLG-- 278

Query: 284 PNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
                 +P + +Q+PD +GLLQDI PS+FF++EP
Sbjct: 279 -----EYPQNVNQVPD-YGLLQDIVPSMFFRQEP 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557405|ref|XP_002519733.1| WRKY transcription factor, putative [Ricinus communis] gi|223541150|gb|EEF42706.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 181/331 (54%), Positives = 216/331 (65%), Gaps = 40/331 (12%)

Query: 3   NESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSPQEFDPSQ-MNFTDCFHGLMD 61
           + SRD+YY A F  +                 SS +Y S Q  DPS  ++FT+C HG MD
Sbjct: 4   DHSRDLYYHAPFHEDHQFILG-----------SSTNYGSSQGLDPSSFLSFTECLHGSMD 52

Query: 62  YNSLEKAFTGMSPSSSEVFSSVEGNQK--QVKDL----------LIPNSSISSSSAEAGG 109
           YNSL KAF GMSPSSSEV SS+EGN K  ++ DL          + PNSS S SS+EAGG
Sbjct: 53  YNSLSKAF-GMSPSSSEVISSMEGNPKPLEIGDLGSGGGNSENPVTPNSSASFSSSEAGG 111

Query: 110 EEDSHSGKS-TQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTKSE 168
           EEDS  GK+ T+K +Q    PK    G E  +   ++ K  KKGEK+Q+EPR AFMTKSE
Sbjct: 112 EEDS--GKTATKKGNQ----PK----GSEDGECSKKDGKTKKKGEKRQREPRFAFMTKSE 161

Query: 169 VDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHS 228
           VDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DPSIVITTYEGQH+
Sbjct: 162 VDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHN 221

Query: 229 HPLPTTLRGNAAGIFQSSSMLTPT-PMNVS-SFPPDQWLGYSNMMPAMTHNQTAAPGPNA 286
           HP+P TLRGNAA +F S SMLTP  PM    +FP +  +   ++              N 
Sbjct: 222 HPIPATLRGNAAAMF-SHSMLTPANPMVTRPTFPQEILVQLPHLSNQAGTGSIYQQSVNH 280

Query: 287 FVTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
                   HQ+PD +GLLQDI PS+FFK+EP
Sbjct: 281 QHHLHQYHHQVPD-YGLLQDIVPSMFFKQEP 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121423|gb|ACV92031.1| WRKY transcription factor 29 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 180/333 (54%), Positives = 224/333 (67%), Gaps = 36/333 (10%)

Query: 1   MSNESRDIYYRALFQPN-VNIEAAARPGVSVAASSSSPDYVSPQEFDPSQ-MNFTDCFHG 58
           MSNE RD YY   FQ + ++++  +  G S    S        Q  DPS  M+ T+C HG
Sbjct: 1   MSNEHRDFYYHTPFQEDHLDVKPPSILGSSTYNRSPG------QGLDPSSYMSLTECLHG 54

Query: 59  LMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQV--KDL----------LIPNSSISSSSAE 106
            +DYNSL KAF G+SPSSSEVFSS+E + + V  +DL            PNSS+S SS+E
Sbjct: 55  SVDYNSLAKAF-GLSPSSSEVFSSIEESSRPVEARDLDGGNSTDQVPATPNSSVSFSSSE 113

Query: 107 AGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTK 166
           AGG+EDS  GK T+K+ Q  + P+D   GGE+S K  + KK  +K   +QKEPR AFMTK
Sbjct: 114 AGGDEDS--GK-TKKETQP-EKPED---GGENSDKKDKAKKKAEK---RQKEPRFAFMTK 163

Query: 167 SEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQ 226
           SEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DPS VITTYEGQ
Sbjct: 164 SEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQ 223

Query: 227 HSHPLPTTLRGNAAGIFQSSSMLTPTPMNVS--SFPPDQWLGYSNMMPAMTHNQTAAPGP 284
           H+HP+PTTLRG+A+ +F S SML P PM  S   FP  Q   +   +PA  ++Q     P
Sbjct: 224 HNHPIPTTLRGSASAMF-SHSMLAPAPMAASGPGFPHHQGYNFVQ-IPAAMNSQNMGAYP 281

Query: 285 NAFVTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
            +   H    +Q+PD +GLLQDI PS+F ++EP
Sbjct: 282 QSVNQHVHQQYQVPD-YGLLQDIVPSIFLRQEP 313

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388324557|gb|AFK27602.1| WRKY71 [Vitis amurensis]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/281 (54%), Positives = 186/281 (66%), Gaps = 30/281 (10%)

Query: 46  DPSQMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQV----KDLLIPNSSIS 101
           DPS M FTD FHG +DYN+L KAF  MS SSSEV S V+ +  +     +    PNS  +
Sbjct: 52  DPSYMTFTDYFHGSLDYNTLSKAF-DMSCSSSEVISPVDNDSGKGTASHEHPSTPNSLDT 110

Query: 102 SSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRV 161
           SSS EA  E+   SGKS  K D  LQ     G   +  +   +  K+ KKGEK+ KEPR 
Sbjct: 111 SSSTEAVTED---SGKSKHKPD--LQG----GGCEDGDENSKKANKSKKKGEKRPKEPRF 161

Query: 162 AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVIT 221
           AFMTKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DPSIVIT
Sbjct: 162 AFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVIT 221

Query: 222 TYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAA 281
           TYEGQH+HP P T+RGNAA +  +S   + T   V S  P ++L  + M+P   +NQ+  
Sbjct: 222 TYEGQHNHPCPATIRGNAAAMLPTSFFSSAT---VGSSFPQEFL--TQMLPP--NNQS-- 272

Query: 282 PGPNAFVTHPLDDH-----QLPDNFGLLQDIAPSVFFKREP 317
            GPN+   H +  H     QLPD+ GLLQDI PS   K+EP
Sbjct: 273 -GPNSMYYHNITPHHQQQFQLPDH-GLLQDIVPSFIRKQEP 311

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446835|ref|XP_002283603.1| PREDICTED: probable WRKY transcription factor 28 [Vitis vinifera] gi|302143547|emb|CBI22108.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (620), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 153/281 (54%), Positives = 185/281 (65%), Gaps = 30/281 (10%)

Query: 46  DPSQMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQV----KDLLIPNSSIS 101
           DPS M FTD  HG +DYN+L KAF  MS SSSEV S V+ +  +     +    PNS  +
Sbjct: 52  DPSYMTFTDYLHGSLDYNTLSKAF-DMSCSSSEVISPVDNDSGKGTASHEHPSTPNSLDT 110

Query: 102 SSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRV 161
           SSS EA  E+   SGKS  K D  LQ     G   +  +   +  K+ KKGEK+ KEPR 
Sbjct: 111 SSSTEAITED---SGKSKHKPD--LQG----GGCEDGDENSKKANKSKKKGEKRPKEPRF 161

Query: 162 AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVIT 221
           AFMTKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DPSIVIT
Sbjct: 162 AFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVIT 221

Query: 222 TYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQTAA 281
           TYEGQH+HP P T+RGNAA +  +S   + T   V S  P ++L  + M+P   +NQ+  
Sbjct: 222 TYEGQHNHPCPATIRGNAAAMLPTSFFSSAT---VGSSFPQEFL--TQMLPP--NNQS-- 272

Query: 282 PGPNAFVTHPLDDH-----QLPDNFGLLQDIAPSVFFKREP 317
            GPN+   H +  H     QLPD +GLLQDI PS   K+EP
Sbjct: 273 -GPNSMYYHNITPHHQQQFQLPD-YGLLQDIVPSFIRKQEP 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510776|ref|XP_003524110.1| PREDICTED: probable WRKY transcription factor 28-like [Glycine max]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 184/363 (50%), Positives = 230/363 (63%), Gaps = 60/363 (16%)

Query: 1   MSNESRDIYYRAL-FQPNVN-----IEAAARPGV------SVAASSSSPDYVSPQEFDPS 48
           MS E +++YY+ L   PN+N      EA +   +      S    S S  Y S Q FDPS
Sbjct: 1   MSVEPKELYYQDLVLDPNINNQHQGTEAGSNNTMYEKHFSSTIIPSDSTAYDSSQAFDPS 60

Query: 49  QMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQKQVKD-------------LLI 95
            M+ T+C  G MDYNSL  +F G+SPSSSEVFSSV+GNQK   +             L  
Sbjct: 61  YMSLTECLQGGMDYNSLATSF-GLSPSSSEVFSSVDGNQKPAVEGGDGGGGGGGSETLAT 119

Query: 96  PNSSISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKKGEKK 155
            NSS+SSSS+EAG EEDS  GKS  K ++ +++ +    G E+SKK ++EKK   KGEKK
Sbjct: 120 LNSSVSSSSSEAGAEEDS--GKS--KKERQVKTEE----GEENSKKGNKEKK---KGEKK 168

Query: 156 QKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYED 215
           QKEPR AFMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++D
Sbjct: 169 QKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQD 228

Query: 216 PSIVITTYEGQHSHPLPTTLRGN-AAGIFQSSSML-TPTPMNV-SSFPPDQWL------- 265
           P+ VITTYEGQH+HP+PT+LRGN AAG+F  SS+L TPTP+   S+FP D +L       
Sbjct: 229 PTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSSLLATPTPLAAGSNFPQDLFLHMHHPHH 288

Query: 266 ---GYSNMM---PAMTHNQTAAPGPNAFVT-------HPLDDHQLPDNFGLLQDIAPSVF 312
               ++N+                P++F +         L +  LP  +GLLQDI PS+F
Sbjct: 289 QYHIHNNLFTTQSTTNTTTATTTTPSSFYSSYNNINNSLLHNQFLPPEYGLLQDIVPSMF 348

Query: 313 FKR 315
             +
Sbjct: 349 HNK 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206574960|gb|ACI14393.1| WRKY28-1 transcription factor [Brassica napus]

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/321 (42%), Positives = 189/321 (58%), Gaps = 15/321 (4%)

Query: 1   MSNESRDIYYRALFQPNVNIEAAARPGVSVAASSSSPDYVSPQEFDPSQMNFTDCFHGL- 59
           MSNE++D Y       N    ++      +   +S+P       FD S  +FTDC     
Sbjct: 1   MSNETKDFY-------NYQFPSSFSLYDMMNLPTSAPSSYGNNGFDLSSYSFTDCLQSSP 53

Query: 60  MDYNSLEKAFTGMSPSSSEVF-SSVEGNQKQVKDLLIPNSSISSSSAEAGGEEDSHSGKS 118
             Y+SL +   G+SPSSSEVF SS++   K+     +   + +  SA +   E  H G+ 
Sbjct: 54  GAYDSLLQKTFGLSPSSSEVFNSSIDQESKRDVSNDVTGETPTRVSAPSSSSEADHPGED 113

Query: 119 TQKDD-QALQSPKDHGHGGESSKKMSREKKNNKKGEKKQKEPRVAFMTKSEVDHLEDGYR 177
           + K   +  +  +D G   ++SKK+ + KKN    EKKQ+EPRV+FMTKSEVDHLEDGYR
Sbjct: 114 SGKSQIRKRELAEDGGEENQNSKKVGKTKKNE---EKKQREPRVSFMTKSEVDHLEDGYR 170

Query: 178 WRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPTTLRG 237
           WRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DP++VITTYEGQH+HP+PT LRG
Sbjct: 171 WRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRG 230

Query: 238 NAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMT--HNQTAAPGPNAFVTHPLDDH 295
           N+A     S  +TP       F    +    ++  A+   + Q+     NA       ++
Sbjct: 231 NSAAAAMYSDFMTPRSFTHDMFRTAAYTSGGSVEGALDYGYGQSGYGSVNANPNSSHQNY 290

Query: 296 QLPDNFGLLQDIAPSVFFKRE 316
                + LL++I PS+FFK+E
Sbjct: 291 HQGGEYELLKEILPSIFFKQE 311

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528110|ref|XP_003532648.1| PREDICTED: probable WRKY transcription factor 28-like [Glycine max]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 183/380 (48%), Positives = 223/380 (58%), Gaps = 80/380 (21%)

Query: 1   MSNESRDIYYRALF-------------QPNVNIEAAARPGVSVAASSSSPDYVSPQEFDP 47
           MS E +++YY+ L              +   N     +   S    S S  Y S Q FDP
Sbjct: 1   MSVEPKELYYQDLVLDHNIINNQHQGTEAGSNTTMYEKHFSSTLIPSVSAAYDSSQAFDP 60

Query: 48  SQMNFTDCFHGLMDYNSLEKAFTGMSPSSSEVFSSVEGNQK----------------QVK 91
           S M+FTDC  G MDYNSL  +F G+SPSSSEVFSSVEGNQK                  +
Sbjct: 61  SYMSFTDCLQGSMDYNSLATSF-GLSPSSSEVFSSVEGNQKPAEGGGDGGGGGGGSGGSE 119

Query: 92  DLLIPNSSISSSSAEAGGEEDSHSGKSTQKDDQALQSPKDHGHGGESSKKMSREKKNNKK 151
            L   NSSISSSS+EAG EEDS  GKS  K ++ +++ +    GGE+SKK ++EKK  +K
Sbjct: 120 TLATLNSSISSSSSEAGAEEDS--GKS--KKERQVKTEE----GGENSKKGNKEKKKGEK 171

Query: 152 GEKKQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVER 211
              KQKEPR AFMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVER
Sbjct: 172 ---KQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVER 228

Query: 212 SYEDPSIVITTYEGQHSHPLPTTLRGN-AAGIFQSSSML-TPT-PMNV-SSFPPDQWLGY 267
           S++DP+ VITTYEGQH+HP+PT+LRGN AAG+F  SS+L TPT P+   S+FP D +L  
Sbjct: 229 SFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSSLLATPTHPLAAGSNFPQDLFL-- 286

Query: 268 SNMMPAMTHNQTAAPGPNAFVTHPLDDHQ------------------------------- 296
            +M     H+Q      N F T  + +                                 
Sbjct: 287 -HMHYPRHHHQYHHIHNNLFATQSMTNATTATTTTTTATIAPSSFYSSYNNINNSLLNNQ 345

Query: 297 -LPDNFGLLQDIAPSVFFKR 315
            LP  +GLLQDI PS+   +
Sbjct: 346 FLPPEYGLLQDIVPSMLHNK 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.495	0.493	0.558	1.2e-47
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.482	0.542	0.539	1.6e-43
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.476	0.463	0.554	2.3e-39
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.324	0.305	0.692	9.3e-38
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.378	0.300	0.580	6.7e-33
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.479	0.529	0.512	2.3e-32
TAIR|locus:2096019	277	WRKY68 [Arabidopsis thaliana (	0.492	0.563	0.451	8.8e-31
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.233	0.143	0.662	8.2e-25
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.258	0.193	0.609	8.9e-25
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.249	0.255	0.620	9.7e-25

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 91/163 (55%), Positives = 117/163 (71%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             PRV+FMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DP++
Sbjct:   158 PRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTV 217

Query:   219 VITTYEGQHSHPLPTTLRGN-AAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHN 277
             VITTYEGQH+HP+PT LRG+ AA    S+ ++TP       F    +    ++  A+ + 
Sbjct:   218 VITTYEGQHNHPIPTNLRGSSAAAAMFSADLMTPRSFAHDMFRTAAYTNGGSVAAALDYG 277

Query:   278 QTAAPGPNAFVTHPLDDHQLPDNFG---LLQDIAPSVFFKREP 317
                + G  +  ++P   HQ+    G   LL++I PS+FFK+EP
Sbjct:   278 YGQS-GYGSVNSNP-SSHQVYHQGGEYELLREIFPSIFFKQEP 318

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 88/163 (53%), Positives = 113/163 (69%)

Query:   160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
             RVAFMTKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERS++DPSIV
Sbjct:   123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIV 182

Query:   220 ITTYEGQHSHPLPTTLRGNAAG----IFQSS--SMLTPTPMNVSSFPPDQWLGYSNMMPA 273
             ITTYEG+H+HP+P+TLRG  A     + +    S+L   P +   F   +    +N    
Sbjct:   183 ITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKH-SPANYQSV 241

Query:   274 MTHNQTAAPGPNAFVTHPLDDHQLPDNFGLLQDIAPSVFFKRE 316
              + +     G +++     +++Q   ++GLLQDI PS+F K E
Sbjct:   242 GSLSYEHGHGTSSY---NFNNNQPVVDYGLLQDIVPSMFSKNE 281

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 92/166 (55%), Positives = 108/166 (65%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             PRV+FMTK+EVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCTTQKC VKKRVERSY+DP++
Sbjct:   169 PRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTV 228

Query:   219 VITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMMPAMTHNQ 278
             VITTYE QH+HP+PT  R     +F  +   T +  N SS P    L  +   P    N 
Sbjct:   229 VITTYESQHNHPIPTNRR---TAMFSGT---TASDYNPSSSPIFSDLIINT--PRSFSND 280

Query:   279 TAAPGPNAFVT-----HPLDD--HQLPDNFGLLQDIAPSVFFKREP 317
                  P A V      H      HQ    F LL+++ PSVFFK+EP
Sbjct:   281 DLFRVPYASVNVNPSYHQQQHGFHQQESEFELLKEMFPSVFFKQEP 326

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 72/104 (69%), Positives = 77/104 (74%)

Query:   160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
             RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTT  C VKKRVERS+ DPS V
Sbjct:   161 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTV 220

Query:   220 ITTYEGQHSHPLPTTLRG-NAAGIFQSSSMLTPTPMNVSSFPPD 262
             +TTYEGQH+H  P T R  +  G F SS   +        FP D
Sbjct:   221 VTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCFGFPID 264

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 72/124 (58%), Positives = 90/124 (72%)

Query:   160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
             R AF+TKS++D+L+DGYRWRKYGQKAVKNSP+PRSYYRCTT  CGVKKRVERS +DPSIV
Sbjct:   208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIV 267

Query:   220 ITTYEGQHSHPLPTTLRGNAAGIFQSSSM-LTPTPMNVSSF--PPDQWLGYSNMMPAMTH 276
             +TTYEGQH+HP P T RG+  G+  S  +    T  + SSF  P  ++L   +  P   +
Sbjct:   268 MTTYEGQHTHPFPMTPRGHI-GMLTSPILDHGATTASSSSFSIPQPRYLLTQHHQPYNMY 326

Query:   277 NQTA 280
             N  +
Sbjct:   327 NNNS 330

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 83/162 (51%), Positives = 95/162 (58%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             PR AFMTKS+VD+LEDGYRWRKYGQKAVKNSPFPRSYYRCT  +C VKKRVERS +DPSI
Sbjct:   133 PRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSI 192

Query:   219 VITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFP-PDQWLGYSNMMPAMTHN 277
             VITTYEGQH H      RG   GI  +    + T  +    P P+ +  Y  ++  + H 
Sbjct:   193 VITTYEGQHCHQTIGFPRG---GILTAHDPHSFTSHHHLPPPLPNPYY-YQELLHQL-HR 247

Query:   278 QTAAPGPNAF--VTHPLDDHQLPDNFGLLQDIAPSVFFKREP 317
                AP P      T        P   GLL DI P     R P
Sbjct:   248 DNNAPSPRLPRPTTEDTPAVSTPSEEGLLGDIVPQTM--RNP 287

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2096019 WRKY68 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 79/175 (45%), Positives = 100/175 (57%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             P+V+F+T+SEV HL+DGY+WRKYGQK VK+SPFPR+YYRCTT  C VKKRVERS+ DPS 
Sbjct:   104 PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSS 163

Query:   219 VITTYEGQHSHPLPTTLRGNAAGIFQSSSMLTPTPMNVSSFPPDQWLGYSNMM---PAMT 275
             VITTYEGQH+HP P  +     G   S+   +   + + + PP Q L Y+N     P+  
Sbjct:   164 VITTYEGQHTHPRPLLIMPKE-GSSPSNGSASRAHIGLPTLPP-QLLDYNNQQQQAPSSF 221

Query:   276 HNQTAAPGPNAFVTHPLDDH--------QLPD------NFGLLQDIAPSVFFKRE 316
               +              DDH         L D      + GLLQD+ PS   K E
Sbjct:   222 GTEYINRQEKGINHDDDDDHVVKKSRTRDLLDGAGLVKDHGLLQDVVPSHIIKEE 276

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 49/74 (66%), Positives = 59/74 (79%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             PR+   T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CTT  CGV+K VER+  DP  
Sbjct:   395 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKA 454

Query:   219 VITTYEGQHSHPLP 232
             V+TTYEG+H+H LP
Sbjct:   455 VVTTYEGKHNHDLP 468

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 8.9e-25, P = 8.9e-25
 Identities = 50/82 (60%), Positives = 60/82 (73%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             P++   TKSEVD L+DGYRWRKYGQK VK +P PRSYY+CTT  C V+K VER+  D   
Sbjct:   292 PKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKA 351

Query:   219 VITTYEGQHSHPLPTTLRGNAA 240
             VITTYEG+H+H +P    G AA
Sbjct:   352 VITTYEGKHNHDVPAARNGTAA 373

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 49/79 (62%), Positives = 60/79 (75%)

Query:   159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSI 218
             PRV   T S++D L+DGYRWRKYGQK VK +P PRSYY+CT   C V+K VER+++DP  
Sbjct:   220 PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKS 279

Query:   219 VITTYEGQHSHPLPTTLRG 237
             VITTYEG+H H +PT  RG
Sbjct:   280 VITTYEGKHKHQIPTPRRG 298

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ2	WRK28_ARATH	No assigned EC number	0.4345	0.9432	0.9402	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.06680002 hypothetical protein (306 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-36
smart00774	59	smart00774, WRKY, DNA binding domain	5e-36

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  124 bits (313), Expect = 4e-36
 Identities = 43/60 (71%), Positives = 49/60 (81%)

Query: 172 LEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPL 231
           L+DGY WRKYGQK VK SPFPRSYYRCT+  C VKK+VERS +DP IV  TYEG+H+HP 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  123 bits (312), Expect = 5e-36
 Identities = 40/59 (67%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 172 LEDGYRWRKYGQKAVKNSPFPRSYYRCT-TQKCGVKKRVERSYEDPSIVITTYEGQHSH 229
           L+DGY+WRKYGQK +K SP+PRSYYRCT TQ C  KK+V+RS +DPS+V  TYEG+H+H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.64

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.8e-31  Score=200.76  Aligned_cols=59  Identities=69%  Similarity=1.349  Sum_probs=52.6

Q ss_pred             CCCcchhhhcCcccccCCCCCCCccccccCCCccccchhhccCCCCEEEEEEeccCCCC
Q 021142          172 LEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHP  230 (317)
Q Consensus       172 ~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~  230 (317)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            47999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=2.2e-30  Score=195.11  Aligned_cols=58  Identities=69%  Similarity=1.295  Sum_probs=56.4

Q ss_pred             CCCcchhhhcCcccccCCCCCCCcccccc-CCCccccchhhccCCCCEEEEEEeccCCC
Q 021142          172 LEDGYRWRKYGQKAVKNSPFPRSYYRCTT-QKCGVKKRVERSYEDPSIVITTYEGQHSH  229 (317)
Q Consensus       172 ~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~-~~C~akKqVqrs~~Dp~~~~~TY~G~HnH  229 (317)
                      ++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+||.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.64  E-value=0.25  Score=35.04  Aligned_cols=47  Identities=26%  Similarity=0.553  Sum_probs=22.5

Q ss_pred             CCcchhhhcCcccccCCCCCCCccccccC---CCccccchhhccCCCCEEEEEEeccCCC
Q 021142          173 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQ---KCGVKKRVERSYEDPSIVITTYEGQHSH  229 (317)
Q Consensus       173 ~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~---~C~akKqVqrs~~Dp~~~~~TY~G~HnH  229 (317)
                      -|||.-++....      ..+.|+||+..   +|+|+=.+.  . +...+ +...++|||
T Consensus        13 ~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~~~-~~~~~~HnH   62 (62)
T PF04500_consen   13 YDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDGRV-VRTNGEHNH   62 (62)
T ss_dssp             ETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TTEE-EE-S---SS
T ss_pred             ECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCCEE-EECCCccCC
Confidence            488876654433      45589999974   899987666  2 22333 344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-23
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		8e-21

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 56/68 (82%)
Query: 165 TKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYE 224
           T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CTT  CGV+K VER+  DP  V+TTYE
Sbjct: 10  TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 69
Query: 225 GQHSHPLP 232
           G+H+H LP
Sbjct: 70  GKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
           R+   T++  D + DGYRWRKYGQK+VK SP+PRSYYRC++  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 220 ITTYEGQHSHPLP 232
           ITTYEG+H H +P
Sbjct: 62  ITTYEGKHDHDMP 74
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-48
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-46

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  155 bits (393), Expect = 4e-48
 Identities = 47/76 (61%), Positives = 56/76 (73%)

Query: 157 KEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDP 216
                   T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CTT  CGV+K VER+  DP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 217 SIVITTYEGQHSHPLP 232
             V+TTYEG+H+H LP
Sbjct: 62  KAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  150 bits (381), Expect = 2e-46
 Identities = 43/74 (58%), Positives = 55/74 (74%)

Query: 160 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIV 219
           R+   T++  D + DGYRWRKYGQK+VK SP+PRSYYRC++  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 220 ITTYEGQHSHPLPT 233
           ITTYEG+H H +P 
Sbjct: 62  ITTYEGKHDHDMPP 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=5.9e-35  Score=228.46  Aligned_cols=75  Identities=57%  Similarity=1.089  Sum_probs=72.4

Q ss_pred             ceeEEEeccccCCCCCcchhhhcCcccccCCCCCCCccccccCCCccccchhhccCCCCEEEEEEeccCCCCCCC
Q 021142          159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPT  233 (317)
Q Consensus       159 ~rv~~~T~se~d~~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p~  233 (317)
                      .||++.|.+++++++|||+|||||||.|||+++||+|||||+.+|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=8.2e-35  Score=228.62  Aligned_cols=75  Identities=63%  Similarity=1.148  Sum_probs=69.3

Q ss_pred             ceeEEEeccccCCCCCcchhhhcCcccccCCCCCCCccccccCCCccccchhhccCCCCEEEEEEeccCCCCCCC
Q 021142          159 PRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPT  233 (317)
Q Consensus       159 ~rv~~~T~se~d~~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p~  233 (317)
                      .++++.|.+++++++|||+|||||||.|||+++||+|||||+++|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-35

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  120 bits (303), Expect = 2e-35
 Identities = 47/68 (69%), Positives = 56/68 (82%)

Query: 165 TKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYE 224
           T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CTT  CGV+K VER+  DP  V+TTYE
Sbjct: 3   TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 62

Query: 225 GQHSHPLP 232
           G+H+H LP
Sbjct: 63  GKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.9e-35  Score=223.39  Aligned_cols=70  Identities=67%  Similarity=1.240  Sum_probs=67.1

Q ss_pred             EeccccCCCCCcchhhhcCcccccCCCCCCCccccccCCCccccchhhccCCCCEEEEEEeccCCCCCCC
Q 021142          164 MTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHSHPLPT  233 (317)
Q Consensus       164 ~T~se~d~~~DGY~WRKYGQK~Ikgs~~PRsYYRCt~~~C~akKqVqrs~~Dp~~~~~TY~G~HnH~~p~  233 (317)
                      .|.+++++++|||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+||.+++|||+|+|||+.|+
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4678899999999999999999999999999999999999999999999999999999999999999874