Citrus Sinensis ID: 021193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDGSVDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHMVQSF
Secondary Structure (PSIPRED)
ccHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcHccccHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccHHHcccEEEccccccccccccccccccccHccccHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mefcmearafkPSLRRELSCCLKstqqvffddipcvsnedfsvddlldfsngdfedgsvddkdyfsspdpvdddnnsnsgsfsseqslltnefvepvddfaeLEWVSQfvddsscselsllypnyvertrsepdgkpvsnktstnpttttspcfplrvpskartkrtrrsgwawssgsplstestissssstscliftdsvqniewfsgfdepvakklkkkpavqsggglfqrrcshcqtqktpqwrtgplgpktlcnacgvryksgrlfpeyrpacsptfsvdmhsnSHRKVLEMRRKkesagpdvglsHMVQSF
Flexible Loop (DISEMBL)
mefcmearafkpslRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDGSVDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVErtrsepdgkpvsnktstnpttttspcfplrvpskartkrtrrsgwawssgsplstestisssssTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHCQTqktpqwrtgplgpKTLCNACGVRYKSGRLFPEYRPACsptfsvdmhsNSHRKVLEMRRKkesagpdvglshmvqsf
Low Complexity Region (SEG)
MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDGSVDDKDYfsspdpvdddnnsnsgsfssEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVsnktstnpttttspCFPLRVPSKARTKRTRRSGWAWssgsplstestissssstsCLIFTDSVQNIEWFSGFDEPVAkklkkkPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHMVQSF
Disordered region (IsUnstruct)
************SLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFS***************************************TNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYV******************************************************************SCLIFTDSVQNIEWFSGFDEPVAK***********GGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACS**************************************
Disordered Region (DISOPRED)
***CMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDG*********************************NEFVEPVDDFAELEWVSQFVDDS**************************************************************************************************************************SHCQTQKTPQWRTGPLGPKTLCNACGVRY****************************************************
Disordered Region (DISEMBL)
MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDGSVDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERT*********************SPCFPLRVP*********************************SCLIFTDSVQNIEWFSGFDEPVAK*************LFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEM**********VGLSHMVQSF
Disordered Region (DISPRO)
*EFCMEA***KPSLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFS**************************************LTNEFVEPVDDFAELEWVSQFVDDSS**********************************************************************************************************************RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMH********E*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDGSVDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHMVQSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9FH57	339	GATA transcription factor	yes	no	0.939	0.876	0.421	1e-46
Q9SD38	312	GATA transcription factor	no	no	0.848	0.858	0.430	3e-43
P69781	331	GATA transcription factor	no	no	0.781	0.746	0.424	6e-43
Q8L4M6	269	GATA transcription factor	no	no	0.797	0.936	0.403	2e-42
O82632	308	GATA transcription factor	no	no	0.759	0.779	0.405	3e-41
O65515	238	GATA transcription factor	no	no	0.645	0.857	0.401	2e-37
O49741	264	GATA transcription factor	no	no	0.645	0.772	0.397	9e-35
O49743	240	GATA transcription factor	no	no	0.506	0.666	0.423	2e-32
Q8LAU9	274	GATA transcription factor	no	no	0.278	0.321	0.625	4e-29
Q9SV30	322	GATA transcription factor	no	no	0.227	0.223	0.75	2e-28

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/346 (42%), Positives = 189/346 (54%), Gaps = 49/346 (14%)

Query: 5   MEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSNED-FSVDDL-----------LDFSNG 52
           ME  A K S+R+E++  LK+T  V+ + +   + ++ FSVDD              F++ 
Sbjct: 1   MEQAALKSSVRKEMA--LKTTSPVYEEFLAVTTAQNGFSVDDFSVDDLLDLSNDDVFADE 58

Query: 53  DFEDGSVDDKDYFSSPDPVDD-DNNSNSGSFSS---EQSLLTNEFVEPVDDFAELEWVSQ 108
           + +  +  +    SS +P DD D    S  FS      SL T+E   P DD A LEW+S 
Sbjct: 59  ETDLKAQHEMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLPTSELSLPADDLANLEWLSH 118

Query: 109 FVDDSSCSELSLLYPNYVERTRSEPDGKPV---SNKTSTNPTTTTSPCFPLRVPSKARTK 165
           FV+DS  +E S   PN        P  KP     ++       T   CF   VP+KAR+K
Sbjct: 119 FVEDS-FTEYS--GPNLT----GTPTEKPAWLTGDRKHPVTAVTEETCFKSPVPAKARSK 171

Query: 166 RTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFD--EPVA-------- 215
           R R     WS GS  S+  + S S+S+S      S  +  WFSG +  EPV         
Sbjct: 172 RNRNGLKVWSLGSSSSSGPSSSGSTSSS-----SSGPSSPWFSGAELLEPVVTSERPPFP 226

Query: 216 KKLKKKPAVQSGGGLFQ-----RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLF 270
           KK KK+ A     G  Q     R+CSHC  QKTPQWR GP+G KTLCNACGVRYKSGRL 
Sbjct: 227 KKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLL 286

Query: 271 PEYRPACSPTFSVDMHSNSHRKVLEMRRKKE-SAGPDVGLSHMVQS 315
           PEYRPACSPTFS ++HSN HRKV+EMRRKKE ++  + GL+ +VQS
Sbjct: 287 PEYRPACSPTFSSELHSNHHRKVIEMRRKKEPTSDNETGLNQLVQS 332

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD38|GATA6_ARATH GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/295 (43%), Positives = 160/295 (54%), Gaps = 27/295 (9%)

Query: 37  SNEDFSVDDLLDFSNGDFEDGS-VDDKDYF--SSPDPVDDDNNSNSGSFSSEQSLLTNEF 93
           + +DFSVDDLLDFS  + +D   V+D+          V D+N  +  +  S     T+  
Sbjct: 24  NGDDFSVDDLLDFSKEEEDDDVLVEDEAELKVQRKRGVSDENTLHRSNDFSTADFHTSGL 83

Query: 94  VEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPV---SNKTSTNPTTTT 150
             P+DD AELEW+S FVDDSS +  S             P  KPV    N+         
Sbjct: 84  SVPMDDIAELEWLSNFVDDSSFTPYSA------------PTNKPVWLTGNRRHLVQPVKE 131

Query: 151 SPCFPLRVPS-KARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSG 209
             CF  + P+ K R KR R     WS GS   T+S+ SS++S+S      S   +     
Sbjct: 132 ETCFKSQHPAVKTRPKRARTGVRVWSHGSQSLTDSSSSSTTSSSSSPRPSSPLWLASGQF 191

Query: 210 FDEPVAKKLKKKPAVQSGGGLFQ------RRCSHCQTQKTPQWRTGPLGPKTLCNACGVR 263
            DEP+ K  KKK   ++ G          R+C HC  QKTPQWR GPLG KTLCNACGVR
Sbjct: 192 LDEPMTKTQKKKKVWKNAGQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVR 251

Query: 264 YKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKES--AGPDVGLSHMVQSF 316
           YKSGRL PEYRPACSPTFS ++HSN H KV+EMRRKKE+     + GL+  VQ+ 
Sbjct: 252 YKSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRKKETSDGAEETGLNQPVQTV 306

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  174 bits (442), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 158/290 (54%), Gaps = 43/290 (14%)

Query: 40  DFSVDDLL-DFSNGDFEDGSV----------DDKDYFSSPD-PVDDDNNSNSGSFSSEQS 87
           DF+VDDLL DFSN D E+  V           D   FS+ D P    +  +  SFS +  
Sbjct: 13  DFAVDDLLVDFSNDDDEENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSFSGDLC 72

Query: 88  LLTNEFVEPVDDFA-ELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVSNKTSTNP 146
           +       P DD A ELEW+S  VD+S   E  +     +   +S PD  P S+  S   
Sbjct: 73  I-------PSDDLADELEWLSNIVDESLSPE-DVHKLELISGFKSRPD--PKSDTGSPEN 122

Query: 147 TTTTSPCFP--LRVPSKARTKRTRRSGWAWSS---------GSPLSTESTISS----SSS 191
             ++SP F   + VP+KAR+KR+R +   W+S          SP + E+ +SS    S  
Sbjct: 123 PNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPP 182

Query: 192 TSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPL 251
           TS  +    +   +   G       + KK  +    GG  +RRC HC T KTPQWRTGP+
Sbjct: 183 TSPPLLMAPLGKKQAVDG-----GHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPM 237

Query: 252 GPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKE 301
           GPKTLCNACGVRYKSGRL PEYRPA SPTF +  HSNSHRKV+E+RR+KE
Sbjct: 238 GPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKE 287

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 159/310 (51%), Gaps = 58/310 (18%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSN--EDFSVDDLLDFSNGDFEDGS 58
           ME   EARA K SLR E +  LK  Q +  +D+   S+  EDFSV+  LDFS G      
Sbjct: 1   MELWTEARALKASLRGESTISLKHHQVIVSEDLSRTSSLPEDFSVECFLDFSEGQ----K 56

Query: 59  VDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSEL 118
            ++++  S     + +   +   FSS+  +       P +D  ELEWVS+ VDD S  E+
Sbjct: 57  EEEEEVVSVSSSQEQEEQEHDCVFSSQPCIFDQLPSLPDEDVEELEWVSRVVDDCSSPEV 116

Query: 119 SLLYPNYVERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRTRRSGWAWSSGS 178
           SLL                         T  T P F  R+P K RTKR+R S        
Sbjct: 117 SLLLTQ----------------------THKTKPSFS-RIPVKPRTKRSRNS-------- 145

Query: 179 PLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHC 238
                    + S    L+ T+                ++L+KK   Q    +FQRRCSHC
Sbjct: 146 --------LTGSRVWPLVSTN----------HQHAATEQLRKKK--QETVLVFQRRCSHC 185

Query: 239 QTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRR 298
            T  TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTFS ++HSN HRKVLE+R+
Sbjct: 186 GTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRK 245

Query: 299 KKESAGPDVG 308
            KE  G + G
Sbjct: 246 SKE-LGEETG 254

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 150/269 (55%), Gaps = 29/269 (10%)

Query: 41  FSVDDLLDFSN--GDFEDG--SVDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEP 96
           F VDDLLDFSN  G+ +DG  ++ D    S+    D   +SNS S  ++ +  ++ ++ P
Sbjct: 18  FVVDDLLDFSNDDGEVDDGLNTLPDSSTLSTGTLTD---SSNSSSLFTDGTGFSDLYI-P 73

Query: 97  VDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVSNKTSTNPTTTTSPC--- 153
            DD AELEW+S FV++S   E       +      +  G  +++     P          
Sbjct: 74  NDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEPELDHQFIDID 133

Query: 154 -FPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDE 212
              + VP+KAR+KR+R +   W+S        +++ S  T+       V+  ++    D 
Sbjct: 134 ESNVAVPAKARSKRSRSAASTWAS-----RLLSLADSDETNPKKKQRRVKEQDFAGDMDV 188

Query: 213 PVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPE 272
                       +SGGG   RRC HC T+KTPQWRTGP+GPKTLCNACGVRYKSGRL PE
Sbjct: 189 DCG---------ESGGG---RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPE 236

Query: 273 YRPACSPTFSVDMHSNSHRKVLEMRRKKE 301
           YRPA SPTF +  HSNSHRKV+E+RR+KE
Sbjct: 237 YRPASSPTFVMARHSNSHRKVMELRRQKE 265

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/279 (40%), Positives = 136/279 (48%), Gaps = 75/279 (26%)

Query: 40  DFSVDDLLDFSNGD--FEDGSVDDKDYFSSPDPVDDDNNSNSGSFSSE-------QSLLT 90
           DFSVDDLLD SN D   E  S   K+        D+       SFS +       + LL+
Sbjct: 10  DFSVDDLLDLSNADTSLESSSSQRKE--------DEQEREKFKSFSDQSTRLSPPEDLLS 61

Query: 91  NEFVEPVDDFAELEWVSQFVDDS-SCSELSLLYPNYVERTRSEPDGKPVSNKTSTNPTTT 149
                PV D  +LEW+S FV+DS S S +S  +P                     NP  +
Sbjct: 62  FPGDAPVGDLEDLEWLSNFVEDSFSESYISSDFP--------------------VNPVAS 101

Query: 150 TS---PCFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEW 206
                 C    VP K R+KR R +G  WS  SP    ST  +                  
Sbjct: 102 VEVRRQC----VPVKPRSKRRRTNGRIWSMESPSPLLSTAVARR---------------- 141

Query: 207 FSGFDEPVAKKLKKKPAVQSGGGLFQRR-----CSHCQTQKTPQWRTGPLGPKTLCNACG 261
                    KK  ++    S GG+ Q++     CSHC  QKTPQWR GPLG KTLCNACG
Sbjct: 142 ---------KKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACG 192

Query: 262 VRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKK 300
           VR+KSGRL PEYRPACSPTF+ ++HSNSHRKVLE+R  K
Sbjct: 193 VRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  147 bits (371), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 120/234 (51%), Gaps = 30/234 (12%)

Query: 68  PDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVE 127
           P P +   + +    S++     ++   P DD A LEW+SQFVDDS           + +
Sbjct: 44  PPPQNPSFHHHHLPSSADHHSFLHDICVPSDDAAHLEWLSQFVDDS-----------FAD 92

Query: 128 RTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTIS 187
              +   G   S KT T+             P K R+KR+R       + SP+  ES   
Sbjct: 93  FPANPLGGTMTSVKTETS------------FPGKPRSKRSRAPAPFAGTWSPMPLESEHQ 140

Query: 188 SSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWR 247
              S +           E   G      +          GGG+  RRC+HC ++KTPQWR
Sbjct: 141 QLHSAAKF-----KPKKEQSGGGGGGGGRHQSSSSETTEGGGM--RRCTHCASEKTPQWR 193

Query: 248 TGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKE 301
           TGPLGPKTLCNACGVR+KSGRL PEYRPA SPTF +  HSNSHRKV+E+RR+KE
Sbjct: 194 TGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 247

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 116/217 (53%), Gaps = 57/217 (26%)

Query: 89  LTNEFVEPVDDFAELEWVSQFVDDS----SCSELSLLYPNYVERTRSEPDGKPVSNKTST 144
            T++   P DD A LEW+S+FVDDS      + L++     +  T     GKP S ++  
Sbjct: 63  FTHDLCVPSDDAAHLEWLSRFVDDSFSDFPANPLTMTVRPEISFT-----GKPRSRRSRA 117

Query: 145 NPTTTTSPCFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNI 204
                         PS A T       WA     P+S ES +  S +             
Sbjct: 118 P------------APSVAGT-------WA-----PMS-ESELCHSVA------------- 139

Query: 205 EWFSGFDEPVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRY 264
                  +P  KK+    +V + G    RRC+HC ++KTPQWRTGPLGPKTLCNACGVRY
Sbjct: 140 -------KPKPKKVYNAESVTADGA---RRCTHCASEKTPQWRTGPLGPKTLCNACGVRY 189

Query: 265 KSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKE 301
           KSGRL PEYRPA SPTF +  HSNSHRKV+E+RR+KE
Sbjct: 190 KSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 67/88 (76%)

Query: 219 KKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACS 278
           KK   V +   +  R+C HC  +KTPQWR GP GPKTLCNACGVRYKSGRL PEYRPA S
Sbjct: 180 KKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANS 239

Query: 279 PTFSVDMHSNSHRKVLEMRRKKESAGPD 306
           PTF+ ++HSNSHRK++EMR++ +S   D
Sbjct: 240 PTFTAELHSNSHRKIVEMRKQYQSGDGD 267

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 61/72 (84%)

Query: 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRK 292
           R+C HC+  KTPQWR GP+GPKTLCNACGVRYKSGRLFPEYRPA SPTF+  +HSNSH+K
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query: 293 VLEMRRKKESAG 304
           V EMR K+ S G
Sbjct: 289 VAEMRNKRCSDG 300

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
302398797	323	GATA domain class transcription factor [	0.952	0.931	0.547	6e-74
224105311	329	predicted protein [Populus trichocarpa]	0.968	0.930	0.530	3e-73
302398805	321	GATA domain class transcription factor [	0.952	0.937	0.538	3e-71
255543845	368	GATA transcription factor, putative [Ric	0.958	0.823	0.519	2e-68
297744743	352	unnamed protein product [Vitis vinifera]	0.889	0.798	0.535	2e-65
37572449	326	AG-motif binding protein-4 [Nicotiana ta	0.939	0.911	0.489	1e-64
225427744	317	PREDICTED: GATA transcription factor 5-l	0.914	0.911	0.514	1e-63
388516843	296	unknown [Medicago truncatula]	0.829	0.885	0.461	2e-61
357473525	296	GATA transcription factor [Medicago trun	0.829	0.885	0.458	4e-61
356544459	289	PREDICTED: GATA transcription factor 7-l	0.784	0.858	0.493	3e-60

>gi|302398797|gb|ADL36693.1| GATA domain class transcription factor [Malus x domestica]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 185/338 (54%), Positives = 221/338 (65%), Gaps = 37/338 (10%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPC------VSNEDFSVDDLLDFSNGDF 54
           ME+CMEARA K SLRREL+  +KSTQ V  +++ C      V +EDFSVDDLLD SN +F
Sbjct: 1   MEYCMEARALKSSLRRELA--VKSTQHVLLEELWCATGISGVPSEDFSVDDLLDLSNDEF 58

Query: 55  EDGSVDDKDYFSSPDPVDDD-NNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDS 113
            +GSV+++        VDD+ +NS++   +   S L  + V P DD AELEWVS FVDDS
Sbjct: 59  GNGSVEEEGEERDSVSVDDETSNSSNSVLADSDSGLATQLVVPDDDLAELEWVSHFVDDS 118

Query: 114 SCSELSLLY------PNYVERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRT 167
              +LSLL+      P  +   RSE + KP   + S          FP  VP K RTKR 
Sbjct: 119 -LPDLSLLHTIGVQKPEALLANRSESEPKPAQLRASL---------FPFEVPVKPRTKRC 168

Query: 168 RRSGWAWSSGSPLSTESTISSSS-----STSCLIFTDSVQNIEWFSGFDEPVAKKLKKKP 222
           R +   WS  S  S  S  SSS      ST CLIF + VQ++  F G  EP AKK KKKP
Sbjct: 169 RLASRDWSLSSSSSPSSPSSSSGSGLSFSTPCLIF-NPVQSMHVFVG--EPAAKKQKKKP 225

Query: 223 AVQSG----GGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACS 278
           AVQ+G    GG FQRRCSHCQ QKTPQWRTGPLGPKTLCNACGVR+KSGRLFPEYRPACS
Sbjct: 226 AVQTGEGSIGGQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACS 285

Query: 279 PTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHMVQSF 316
           PTFS D+HSNSHRKVLEMR++KE   P+  L+ M++SF
Sbjct: 286 PTFSGDVHSNSHRKVLEMRKRKEVGEPEPRLNRMIRSF 323

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105311|ref|XP_002313763.1| predicted protein [Populus trichocarpa] gi|222850171|gb|EEE87718.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 180/339 (53%), Positives = 215/339 (63%), Gaps = 33/339 (9%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVS-------NEDFSVDDLLDFSNGD 53
           MEF +E RA K SL REL     +++Q F +D   ++       ++DFSVD  LDFSNG+
Sbjct: 1   MEFRVEERALKSSLLRELDT-KTTSEQAFCEDFLALNTPGVVSFDQDFSVDCFLDFSNGE 59

Query: 54  FEDGSV----DDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQF 109
           F DG V    ++KD  S       D++ NS S S   S L +E   P DD AELEWVS F
Sbjct: 60  FNDGYVQEQEEEKDSISVSSQDRVDDDFNSNSSSFSDSFLASELAVPTDDIAELEWVSHF 119

Query: 110 VDDSSCSELSLLYP------NYVERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKAR 163
           VDDS  S++SLL P          + R EP+ KP   KTS          FP RVPSKAR
Sbjct: 120 VDDS-VSDVSLLVPACKGSSKRHAKNRFEPETKPTFAKTSC--------LFPSRVPSKAR 170

Query: 164 TKRTRRSGWAWSSGS--PLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKK 221
           TKR+R +G  WS+GS    +  S+ SS+SS  CL+ T++VQ  +  S   E   K  KK+
Sbjct: 171 TKRSRPTGRTWSAGSNQSETPSSSTSSTSSMPCLVATNTVQTADSLSWLSEQPMKISKKR 230

Query: 222 PAVQSGGGL----FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC 277
           PAV S G +    FQRRCSHCQ QKTPQWRTGPLG KTLCNACGVRYKSGRLFPEYRPAC
Sbjct: 231 PAVHSSGLMASTQFQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPAC 290

Query: 278 SPTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHMVQSF 316
           SPTFS ++HSNSHRKVLEMRRKKE AG +  L+ MV SF
Sbjct: 291 SPTFSSEVHSNSHRKVLEMRRKKEVAGAEPRLNQMVPSF 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398805|gb|ADL36697.1| GATA domain class transcription factor [Malus x domestica]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 181/336 (53%), Positives = 224/336 (66%), Gaps = 35/336 (10%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVSN------EDFSVDDLLDFSNGDF 54
           ME+C+EA+A K SLRREL+  +KSTQ V  +++ C +       EDFSVDDLLD SNG+F
Sbjct: 1   MEYCIEAKALKSSLRRELA--VKSTQHVLLEELWCATGISGVPCEDFSVDDLLDLSNGEF 58

Query: 55  EDGSVDDKDYFSSPDPVDDD-NNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDS 113
           EDGSV++++       VDD+ +NS+S       S L  + + P DD AELEWVS FVDDS
Sbjct: 59  EDGSVEEEEEEKESVSVDDEISNSSSLVLPDSDSGLATQLLVPDDDLAELEWVSHFVDDS 118

Query: 114 SCSELSLLY------PNYVERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRT 167
              +LSL +      P  +   R EP+ KPV  +         +P FP +VP K RTKR 
Sbjct: 119 -LPDLSLFHTIGTQKPEALLMNRFEPEPKPVPLR---------APLFPFQVPVKPRTKRY 168

Query: 168 RRSGWAWSSGSPLSTESTISSSSS---TSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAV 224
           + +   WSS S  S  S+  SS     T CLIF + VQ+++ F G  EP AKK KKKPAV
Sbjct: 169 KPASRVWSSSSSCSPSSSPCSSGFSFSTPCLIF-NPVQSMDVFVG--EPAAKKQKKKPAV 225

Query: 225 QSG----GGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPT 280
           Q+G    GG FQRRCSHCQ QKTPQWRTGPLGPKTLCNACGVR+KSGRLFPEYRPACSPT
Sbjct: 226 QTGEGSIGGQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPT 285

Query: 281 FSVDMHSNSHRKVLEMRRKKESAGPDVGLSHMVQSF 316
           FS  +HSNSHRKVLEMR++K+   P+  L+ M++SF
Sbjct: 286 FSGAVHSNSHRKVLEMRKRKDVGEPEPLLNRMIRSF 321

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543845|ref|XP_002512985.1| GATA transcription factor, putative [Ricinus communis] gi|223547996|gb|EEF49488.1| GATA transcription factor, putative [Ricinus communis]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 198/381 (51%), Positives = 234/381 (61%), Gaps = 78/381 (20%)

Query: 1   MEFCMEARAFKPSLRREL--SCCLKSTQQVFFDDIPCVSN----EDFSVDDLLDFSNG-D 53
           ME+CM ARA K SLR ++  S    +TQQ FFDD+   SN    EDFSVD   DFSNG +
Sbjct: 1   MEYCMAARALKSSLRSDMMKSSTTTTTQQFFFDDMFSNSNNTVVEDFSVDCFFDFSNGGE 60

Query: 54  FED-GSV------------------------------------DDKDYFSSPD--PVDDD 74
           F+D GS                                      D    SS D   VDDD
Sbjct: 61  FKDSGSTAAFNNNVQEQQQQQQHMIDAVEEEEDDDDDEEEEEEKDSLSVSSQDRSGVDDD 120

Query: 75  NNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYP----NYVERTR 130
           NNSNS +F  ++S LT+E   P++D AELEWVSQFVDDSS  E SLLYP    ++  R R
Sbjct: 121 NNSNSSTF--DESFLTSELAVPIEDLAELEWVSQFVDDSS-PEFSLLYPLNSEDHHTRNR 177

Query: 131 SEPDG-KPVSNKTSTNPTTTTSPCFPLRVPSKARTKRTRRSGWAWSSGSPLS-------- 181
            +P+  KPV+        T  S  FP+++P+K R+KRTR +G  WS  S L+        
Sbjct: 178 FQPEHPKPVA-------LTKPSCLFPVKIPAKPRSKRTRPTGRTWSVESLLTDSSSSSSS 230

Query: 182 --TESTISSSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSGG--GL--FQRRC 235
             + S ISSS+ST C +   +VQ I+    F EP AKK K+KPA Q+GG  GL  FQRRC
Sbjct: 231 YCSSSPISSSASTPCFV---TVQTIDSLPSFCEPPAKKAKRKPAAQTGGATGLTQFQRRC 287

Query: 236 SHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLE 295
           SHCQ QKTPQWRTGPLG KTLCNACGVRYKSGRLFPEYRPACSPTFS D+HSNSHRKVLE
Sbjct: 288 SHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSHRKVLE 347

Query: 296 MRRKKESAGPDVGLSHMVQSF 316
           +R+KKE +GP  GLS MV SF
Sbjct: 348 IRKKKELSGPASGLSQMVPSF 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744743|emb|CBI38005.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 172/321 (53%), Positives = 202/321 (62%), Gaps = 40/321 (12%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPC------VSNEDFSVDDLLDFSNGDF 54
           M+ C+E+RA K SLRRE +  +K+T QV +DD+ C      VS EDFSVDDL DFSNG  
Sbjct: 59  MDQCIESRALKESLRREAA--MKTTPQVLYDDVLCGAGVNGVSGEDFSVDDLFDFSNGGL 116

Query: 55  EDGSVDDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSS 114
             G  DD    SS         S +G F   +SL       P DD   LEW+S FVDDSS
Sbjct: 117 GVGVDDDNSNSSS--------FSGTGDF---ESLSAGGLAVPADDLEHLEWLSHFVDDSS 165

Query: 115 CSELSLLYPNYV-----ERTRSEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKARTKRTRR 169
            SELSLL P        +R   EP            P    +P FP  +P+K R+KR R 
Sbjct: 166 ASELSLLCPAVTGNSPSKRCEEEP-----------RPALLRTPLFPTPLPAKPRSKRHRS 214

Query: 170 SGWAWSSGSPLSTESTISSSSSTS--CLIFTDSVQNIEWFSGFDEPVAKKLKKKPAVQSG 227
           SG AW+ GS   + S  SSSSS+S  CLIF ++V N+E F   ++P AKK KK P+  S 
Sbjct: 215 SGRAWAFGSHSPSSSPSSSSSSSSTSCLIFANTVHNMESFYSLEKPPAKKPKKSPSADSQ 274

Query: 228 GGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHS 287
               QRRCSHC  QKTPQWRTGPLGPKTLCNACGVR+KSGRLFPEYRPACSPTFSV++HS
Sbjct: 275 P---QRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSVEIHS 331

Query: 288 NSHRKVLEMRRKKESAGPDVG 308
           NSHRKVLE+RRKKE+A P  G
Sbjct: 332 NSHRKVLEIRRKKETAEPVSG 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37572449|dbj|BAC98494.1| AG-motif binding protein-4 [Nicotiana tabacum]

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 168/343 (48%), Positives = 213/343 (62%), Gaps = 46/343 (13%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPCVS------NEDFSVDDLLDFSNGDF 54
           ME  +EARA K S   +++  +K++QQVF DDI CV+      ++DFSVDDLLDFS+ DF
Sbjct: 1   MEL-IEARALKSSFLSDMA--MKTSQQVFLDDIWCVAGINNVPSDDFSVDDLLDFSDKDF 57

Query: 55  EDGSV-------DDKDYFSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVS 107
           +DG         D+KD FS         NS   +FS   S  + E   PVD+   LEW+S
Sbjct: 58  KDGQSLQELHEDDEKDSFSGSS---QHRNSQVSNFSCMDSF-SGELPVPVDELENLEWLS 113

Query: 108 QFVDDSSCSELSLLYP--NYVERT------RSEPDGKPVSNKTSTNPTTTTSPCFPLRVP 159
           QFVDDS+ SE SLL P  ++ ++T      RSEP  +PV  K          PCFPL V 
Sbjct: 114 QFVDDST-SEFSLLCPAGSFKDKTGGFQVSRSEPVVRPVVQKLKV-------PCFPLPVV 165

Query: 160 SKARTKRTRRSGWAWSSGSPLSTESTISSSSSTS------CLIFTDSVQNIEWFSGFDEP 213
            K RT R+R +G  WS  SP  +  + S +SS+        ++F++ V + + F   ++P
Sbjct: 166 QKPRTYRSRPAGRKWSFSSPTVSADSCSPTSSSYGSSPFPSVLFSNPVLDGDLFCSVEKP 225

Query: 214 VAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEY 273
             KK KK    ++G G   RRC+HCQ QKTPQWR GPLGPKTLCNACGVRYKSGRLFPEY
Sbjct: 226 PLKKPKKLSTAETGSG---RRCTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEY 282

Query: 274 RPACSPTFSVDMHSNSHRKVLEMRRKKESAG-PDVGLSHMVQS 315
           RPACSPTFS ++HSNSHRKVLEMRRKKES    D GL+ M+ +
Sbjct: 283 RPACSPTFSQEVHSNSHRKVLEMRRKKESGEVVDSGLATMIST 325

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427744|ref|XP_002274872.1| PREDICTED: GATA transcription factor 5-like [Vitis vinifera]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 173/336 (51%), Positives = 206/336 (61%), Gaps = 47/336 (13%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPC------VSNEDFSVDDLLDFSNGDF 54
           M+ C+E+RA K SLRRE +  +K+T QV +DD+ C      VS EDFSVDDL DFSNG  
Sbjct: 1   MDQCIESRALKESLRREAA--MKTTPQVLYDDVLCGAGVNGVSGEDFSVDDLFDFSNGGL 58

Query: 55  EDGSVDD--------KDYFS-------SPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDD 99
             G   +        KD FS         D  +  + S +G F   +SL       P DD
Sbjct: 59  GVGFEGEEEEEEEEEKDSFSWSSLERVDDDNSNSSSFSGTGDF---ESLSAGGLAVPADD 115

Query: 100 FAELEWVSQFVDDSSCSELSLLYPNYV-----ERTRSEPDGKPVSNKTSTNPTTTTSPCF 154
              LEW+S FVDDSS SELSLL P        +R   EP            P    +P F
Sbjct: 116 LEHLEWLSHFVDDSSASELSLLCPAVTGNSPSKRCEEEP-----------RPALLRTPLF 164

Query: 155 PLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTS--CLIFTDSVQNIEWFSGFDE 212
           P  +P+K R+KR R SG AW+ GS   + S  SSSSS+S  CLIF ++V N+E F   ++
Sbjct: 165 PTPLPAKPRSKRHRSSGRAWAFGSHSPSSSPSSSSSSSSTSCLIFANTVHNMESFYSLEK 224

Query: 213 PVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPE 272
           P AKK KK P+  S     QRRCSHC  QKTPQWRTGPLGPKTLCNACGVR+KSGRLFPE
Sbjct: 225 PPAKKPKKSPSADSQP---QRRCSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPE 281

Query: 273 YRPACSPTFSVDMHSNSHRKVLEMRRKKESAGPDVG 308
           YRPACSPTFSV++HSNSHRKVLE+RRKKE+A P  G
Sbjct: 282 YRPACSPTFSVEIHSNSHRKVLEIRRKKETAEPVSG 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516843|gb|AFK46483.1| unknown [Medicago truncatula]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/340 (46%), Positives = 188/340 (55%), Gaps = 78/340 (22%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPC------VSNEDFSVDDLLDFSNGDF 54
           ME  + A A KPSLR E        QQ   ++I C      V+ EDFSVDDLLDFSNG+F
Sbjct: 1   MEVVV-AEALKPSLRTE-----SIFQQTICEEILCLNANNVVAGEDFSVDDLLDFSNGEF 54

Query: 55  EDGSV-----------------DDKDYFSSPDPVDDDNNSNSGSFSSE-----QSLLTNE 92
           + GSV                 +     S  +  +DD+NSNS +FS        S+    
Sbjct: 55  QHGSVGKEVDVCEEEEEEEHEKNSTTSGSEHERTEDDDNSNSTTFSGAGDGESNSIFAGG 114

Query: 93  FVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVSNKTSTNPTTTTSP 152
              P DD A+LEWVS FVDDS   ELSLLYP    + RSEP+ +P        PT   S 
Sbjct: 115 LAVPADDVADLEWVSHFVDDS-IPELSLLYP---VQARSEPEPRP-------GPTNAYSQ 163

Query: 153 CFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDE 212
              +R   K RT +TRR                       +C ++   + N   +S    
Sbjct: 164 LSIIR--RKPRTTKTRRP----------------------NCNVW---IFNPILYS---- 192

Query: 213 PVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPE 272
             AKK +KKP  Q+GG  FQRRCSHC  QKTPQWR GPLGPKTLCNACGVR+KSGRLFPE
Sbjct: 193 --AKKQRKKPEAQTGGAHFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPE 250

Query: 273 YRPACSPTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHM 312
           YRPACSPTFS ++HSNSHRKVLEMRR+KE   P  GL+ +
Sbjct: 251 YRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRI 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473525|ref|XP_003607047.1| GATA transcription factor [Medicago truncatula] gi|355508102|gb|AES89244.1| GATA transcription factor [Medicago truncatula]

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 156/340 (45%), Positives = 185/340 (54%), Gaps = 78/340 (22%)

Query: 1   MEFCMEARAFKPSLRRELSCCLKSTQQVFFDDIPC------VSNEDFSVDDLLDFSNGDF 54
           ME  + A A KPSLR E        QQ   ++I C      V  EDFSVDDLLDFSNG+F
Sbjct: 1   MEVVV-AEALKPSLRTE-----SIFQQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEF 54

Query: 55  EDGSV-----------------DDKDYFSSPDPVDDDNNSNSGSFSSE-----QSLLTNE 92
           + GSV                 +     S  +  +DD+NSNS +FS        S+    
Sbjct: 55  QHGSVGKEVDVCEEEEEEEHEKNSTTSGSEHERTEDDDNSNSTTFSGAGDGESNSIFAGG 114

Query: 93  FVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVSNKTSTNPTTTTSP 152
              P DD A+LEWVS FVDDS   ELSLLYP    + RSEP+ +P        PT   S 
Sbjct: 115 LAVPADDVADLEWVSHFVDDS-IPELSLLYP---VQARSEPEPRP-------GPTNAYSQ 163

Query: 153 CFPLRVPSKARTKRTRRSGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDE 212
              +R   K RT +TRR                     + +  IF   + +         
Sbjct: 164 LSIIR--RKPRTTKTRRP--------------------NCNVWIFNPILYS--------- 192

Query: 213 PVAKKLKKKPAVQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPE 272
             AKK +KKP  Q+GG  FQRRCSHC  QKTPQWR GPLGPKTLCNACGVR+KSGRLFPE
Sbjct: 193 --AKKQRKKPEAQTGGAHFQRRCSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPE 250

Query: 273 YRPACSPTFSVDMHSNSHRKVLEMRRKKESAGPDVGLSHM 312
           YRPACSPTFS ++HSNSHRKVLEMRR+KE   P  GL+ +
Sbjct: 251 YRPACSPTFSGEIHSNSHRKVLEMRRRKEVDEPVSGLNRI 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544459|ref|XP_003540668.1| PREDICTED: GATA transcription factor 7-like [Glycine max]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/318 (49%), Positives = 180/318 (56%), Gaps = 70/318 (22%)

Query: 7   ARAFKPSLRRELSCCLKSTQQVFFDDIPC------VSNEDFSVDDLLDFSNGDFEDGSVD 60
           A+A KPSLR E         Q  +D+I C      V+ EDFSVDDLLDFSNG+F+ G   
Sbjct: 6   AKALKPSLRTEFI-----FPQAIYDEILCFNANNVVAGEDFSVDDLLDFSNGEFQVGKDF 60

Query: 61  DKDY-------------FSSPDPVDDDNNSNSGSFSSEQSLLTNEFVEPVDDFAELEWVS 107
           D                  S D  +DD+NSNS +     S+   E   P DD A+LEWVS
Sbjct: 61  DDYEEDEDEEKGSTSGSLQSQDRTEDDSNSNSTAGGGGDSVFAGELSVPADDVADLEWVS 120

Query: 108 QFVDDSSCSELSLLYPNYV-ERTR--SEPDGKPVSNKTSTNPTTTTSPCFPLRVPSKART 164
            FVDDS   ELSLLYP    E+TR  +EP+ +P S +T            P  VP K RT
Sbjct: 121 HFVDDS-LPELSLLYPVRCSEQTRVCTEPEPRPGSVQT-----------IPA-VPRKPRT 167

Query: 165 KRTRR-SGWAWSSGSPLSTESTISSSSSTSCLIFTDSVQNIEWFSGFDEPVAKKLKKKPA 223
            +TR+ +   WSS S L +  T                             AKK KKK  
Sbjct: 168 GKTRKPNARVWSSMSSLCSSVT-----------------------------AKKQKKKVE 198

Query: 224 VQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSV 283
            Q+GG    RRCSHCQ QKTPQWRTGPLGPKTLCNACGVR+KSGRLFPEYRPACSPTFS 
Sbjct: 199 AQNGGAQSLRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSD 258

Query: 284 DMHSNSHRKVLEMRRKKE 301
           D+HSNSHRKVLEMRRKKE
Sbjct: 259 DIHSNSHRKVLEMRRKKE 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.246	0.289	0.746	3.3e-47
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.234	0.240	0.779	1.3e-44
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.854	0.796	0.406	3.9e-44
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.237	0.315	0.737	1.2e-40
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.835	0.846	0.373	1.4e-39
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.218	0.287	0.811	8.3e-39
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.231	0.276	0.773	4.5e-38
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.825	0.788	0.380	8.9e-38
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.234	0.270	0.702	3.4e-34
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.227	0.223	0.75	1.1e-33

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
 Identities = 59/79 (74%), Positives = 67/79 (84%)

Query:   230 LFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNS 289
             +FQRRCSHC T  TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTFS ++HSN 
Sbjct:   177 VFQRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNL 236

Query:   290 HRKVLEMRRKKESAGPDVG 308
             HRKVLE+R+ KE  G + G
Sbjct:   237 HRKVLELRKSKE-LGEETG 254

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
 Identities = 60/77 (77%), Positives = 67/77 (87%)

Query:   225 QSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVD 284
             +SGGG   RRC HC T+KTPQWRTGP+GPKTLCNACGVRYKSGRL PEYRPA SPTF + 
Sbjct:   192 ESGGG---RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMA 248

Query:   285 MHSNSHRKVLEMRRKKE 301
              HSNSHRKV+E+RR+KE
Sbjct:   249 RHSNSHRKVMELRRQKE 265

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 124/305 (40%), Positives = 148/305 (48%)

Query:    37 SNEDFSVDDLLDFSNGD-FEDGSVDDKDYXXXXXXXXXXXXXXXXXXXXEQ--------- 86
             S +DFSVDDLLD SN D F D   D K                                 
Sbjct:    37 SVDDFSVDDLLDLSNDDVFADEETDLKAQHEMVRVSSEEPNDDGDALRRSSDFSGCDDFG 96

Query:    87 SLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVXXXXXXXX 146
             SL T+E   P DD A LEW+S FV+DS  +E S   PN +  T +E              
Sbjct:    97 SLPTSELSLPADDLANLEWLSHFVEDSF-TEYS--GPN-LTGTPTEKPAWLTGDRKHPVT 152

Query:   147 XXXXXXCFPLRVPSKARTKRTRRSGWAWXXXXXXXXXXXXXXXXXXXCLIFTDSVQNIEW 206
                   CF   VP+KAR+KR R     W                       + S  +  W
Sbjct:   153 AVTEETCFKSPVPAKARSKRNRNGLKVWSLGSSSSSGPSSSGSTSS-----SSSGPSSPW 207

Query:   207 FSGFD--EPVAXXXXX-XPAV---QSGGGLF---------QRRCSHCQTQKTPQWRTGPL 251
             FSG +  EPV        P     +S   +F         QR+CSHC  QKTPQWR GP+
Sbjct:   208 FSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPM 267

Query:   252 GPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKE-SAGPDVGLS 310
             G KTLCNACGVRYKSGRL PEYRPACSPTFS ++HSN HRKV+EMRRKKE ++  + GL+
Sbjct:   268 GAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKEPTSDNETGLN 327

Query:   311 HMVQS 315
              +VQS
Sbjct:   328 QLVQS 332

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
 Identities = 59/80 (73%), Positives = 65/80 (81%)

Query:   226 SGGGLFQ----RRC-SHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPT 280
             S GG+ Q    RRC SHC  QKTPQWR GPLG KTLCNACGVR+KSGRL PEYRPACSPT
Sbjct:   152 SYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPT 211

Query:   281 FSVDMHSNSHRKVLEMRRKK 300
             F+ ++HSNSHRKVLE+R  K
Sbjct:   212 FTNEIHSNSHRKVLELRLMK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 111/297 (37%), Positives = 139/297 (46%)

Query:    37 SNEDFSVDDLLDFSNGDFEDGSVDDKDYXXXXXXXXXXXXXXXXXXXXEQSLL---TNEF 93
             + +DFSVDDLLDFS  + +D  + + +                     + S     T+  
Sbjct:    24 NGDDFSVDDLLDFSKEEEDDDVLVEDEAELKVQRKRGVSDENTLHRSNDFSTADFHTSGL 83

Query:    94 VEPVDDFAELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVXXXXXXXXXXX---X 150
               P+DD AELEW+S FVDDSS       +  Y     S P  KPV               
Sbjct:    84 SVPMDDIAELEWLSNFVDDSS-------FTPY-----SAPTNKPVWLTGNRRHLVQPVKE 131

Query:   151 XXCFPLRVPS-KARTKRTRRSGWAWXXXXXXXXXXXXXXXXXXXCLIFTDSVQNIEWF-S 208
               CF  + P+ K R KR R     W                       +    +  W  S
Sbjct:   132 ETCFKSQHPAVKTRPKRARTGVRVWSHGSQSLTDSSSSSTTSSSS---SPRPSSPLWLAS 188

Query:   209 G--FDEPVAXXXXXXPAVQSGGGLFQ------RRCSHCQTQKTPQWRTGPLGPKTLCNAC 260
             G   DEP+          ++ G          R+C HC  QKTPQWR GPLG KTLCNAC
Sbjct:   189 GQFLDEPMTKTQKKKKVWKNAGQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNAC 248

Query:   261 GVRYKSGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKESA--GPDVGLSHMVQS 315
             GVRYKSGRL PEYRPACSPTFS ++HSN H KV+EMRRKKE++    + GL+  VQ+
Sbjct:   249 GVRYKSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRKKETSDGAEETGLNQPVQT 305

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query:   233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRK 292
             RRC+HC ++KTPQWRTGPLGPKTLCNACGVRYKSGRL PEYRPA SPTF +  HSNSHRK
Sbjct:   158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query:   293 VLEMRRKKE 301
             V+E+RR+KE
Sbjct:   218 VMELRRQKE 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 58/75 (77%), Positives = 67/75 (89%)

Query:   227 GGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMH 286
             GGG+  RRC+HC ++KTPQWRTGPLGPKTLCNACGVR+KSGRL PEYRPA SPTF +  H
Sbjct:   175 GGGM--RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQH 232

Query:   287 SNSHRKVLEMRRKKE 301
             SNSHRKV+E+RR+KE
Sbjct:   233 SNSHRKVMELRRQKE 247

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 105/276 (38%), Positives = 129/276 (46%)

Query:    40 DFSVDDLL-DFSNGDFEDGSV--DDKDYXXXXXXXXXXXXXXXXXXXXEQ--SLLTNEFV 94
             DF+VDDLL DFSN D E+  V  D                         Q  +  + +  
Sbjct:    13 DFAVDDLLVDFSNDDDEENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSFSGDLC 72

Query:    95 EPVDDFA-ELEWVSQFVDDSSCSELSLLYPNYVERTRSEPDGKPVXXXXXXXXXXXXXXC 153
              P DD A ELEW+S  VD+S   E  +     +   +S PD K                 
Sbjct:    73 IPSDDLADELEWLSNIVDESLSPE-DVHKLELISGFKSRPDPKSDTGSPENPNSSSPIFT 131

Query:   154 FPLRVPSKARTKRTRRSGWAWXXXXXXXXXXXXXXXXXXXCLIFTDSVQN------IEWF 207
               + VP+KAR+KR+R +   W                    L     +        +   
Sbjct:   132 TDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTSPPLLMAP 191

Query:   208 SGFDEPVAXXXXXXPAVQS--GGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265
              G  + V         V S   GG  +RRC HC T KTPQWRTGP+GPKTLCNACGVRYK
Sbjct:   192 LGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 251

Query:   266 SGRLFPEYRPACSPTFSVDMHSNSHRKVLEMRRKKE 301
             SGRL PEYRPA SPTF +  HSNSHRKV+E+RR+KE
Sbjct:   252 SGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKE 287

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
 Identities = 52/74 (70%), Positives = 62/74 (83%)

Query:   233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRK 292
             R+C HC  +KTPQWR GP GPKTLCNACGVRYKSGRL PEYRPA SPTF+ ++HSNSHRK
Sbjct:   194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRK 253

Query:   293 VLEMRRKKESAGPD 306
             ++EMR++ +S   D
Sbjct:   254 IVEMRKQYQSGDGD 267

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 54/72 (75%), Positives = 61/72 (84%)

Query:   233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRK 292
             R+C HC+  KTPQWR GP+GPKTLCNACGVRYKSGRLFPEYRPA SPTF+  +HSNSH+K
Sbjct:   229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query:   293 VLEMRRKKESAG 304
             V EMR K+ S G
Sbjct:   289 VAEMRNKRCSDG 300

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH57	GATA5_ARATH	No assigned EC number	0.4219	0.9398	0.8761	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001038001 hypothetical protein (329 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-14
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	6e-14
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-12

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 235 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL 269
           CS+C T KTP WR GP G +TLCNACG+ Y+   L
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGL 35

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 64.7 bits (158), Expect = 6e-14
 Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFS 282
           R CS+C T +TP WR GP G KTLCNACG+ YK        RP       
Sbjct: 4   RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG--LKRPLSLKKDG 51

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 234 RCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDM 285
            CS+C T  TP WR GP G  TLCNACG+ +K        RP          
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKKDQIK 49

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.5
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.47
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.4
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.1
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.77
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	82.37

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.50  E-value=9.4e-15  Score=108.05  Aligned_cols=44  Identities=48%  Similarity=0.965  Sum_probs=39.6

Q ss_pred             ccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCCCCC
Q 021193          234 RCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPT  280 (316)
Q Consensus       234 ~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~spt  280 (316)
                      .|+||++++||+||+||.|..+||||||+||++++   .+||...+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~---~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC---CCCCcccCc
Confidence            49999999999999999888999999999999887   777876654

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.47  E-value=2.2e-14  Score=105.15  Aligned_cols=45  Identities=53%  Similarity=1.004  Sum_probs=38.7

Q ss_pred             CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 021193          231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC  277 (316)
Q Consensus       231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~  277 (316)
                      ..+.|+||++++||+||+||.|..+||||||++|++++.+  +||..
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~--~rp~~   46 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL--KRPLS   46 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC--CCccc
Confidence            3578999999999999999999889999999999987643  45543

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.40  E-value=2.6e-14  Score=97.50  Aligned_cols=35  Identities=60%  Similarity=1.203  Sum_probs=28.2

Q ss_pred             cccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193          235 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL  269 (316)
Q Consensus       235 C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~  269 (316)
                      |.||++++||+||+||.|..+|||+||++|++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999988899999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.10  E-value=6.2e-11  Score=103.39  Aligned_cols=71  Identities=63%  Similarity=1.185  Sum_probs=63.5

Q ss_pred             CCccccccccCCCcccCCCCCChhhhhhhhhhhhcC---CCCCCCCCCCCCC--------------ccccccch------
Q 021193          232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSG---RLFPEYRPACSPT--------------FSVDMHSN------  288 (316)
Q Consensus       232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~---~~lp~yrp~~spt--------------~~~~~hsn------  288 (316)
                      ...|.||+++.||+||+++.|++.+|||||++|+++   +.++.++.+..++              +....|.+      
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPRNVSPKGSGAVKGRTFTKSLHSNSAQLLL  278 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCccccccccCCCccccccCCCCCcccccchhhhhh
Confidence            589999999999999999999999999999999998   8899999988887              56666666      


Q ss_pred             -----------hhHHHHHHHHhhcc
Q 021193          289 -----------SHRKVLEMRRKKES  302 (316)
Q Consensus       289 -----------~h~kvle~r~qk~~  302 (316)
                                 .+.++.++++.++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~r~~~~  303 (340)
T KOG1601|consen  279 APSKSEPPLLSSHQRVAEVRRYRES  303 (340)
T ss_pred             hhcccCccccccchHHHHHhhccCc
Confidence                       78899999998875

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.77  E-value=1e-05  Score=82.92  Aligned_cols=54  Identities=33%  Similarity=0.580  Sum_probs=41.5

Q ss_pred             CCccccccccCCCcccCCCCC----ChhhhhhhhhhhhcCCCCCCCCCCCCCCccccccc
Q 021193          232 QRRCSHCQTQKTPQWRTGPLG----PKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHS  287 (316)
Q Consensus       232 ~r~C~~Cgt~~TP~WR~GP~G----~~~LCNACGl~yk~~~~lp~yrp~~spt~~~~~hs  287 (316)
                      ...|.||.+..||+|||+..+    .-+|||||||+|+-++..-+  |...++.+...|.
T Consensus       158 ~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~--P~t~ks~~~ks~~  215 (498)
T COG5641         158 PHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRA--PISLKSDSIKSRS  215 (498)
T ss_pred             cchhccccccCCccccccccccccCCccccccccccccccCCcCC--Ccccccccccccc
Confidence            459999999999999999993    38999999999997774433  6655554444443

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=82.37  E-value=1.1  Score=46.78  Aligned_cols=36  Identities=31%  Similarity=0.612  Sum_probs=30.6

Q ss_pred             CCCccccccccCCCcc--cCCCCCChhhhhhhhhhhhc
Q 021193          231 FQRRCSHCQTQKTPQW--RTGPLGPKTLCNACGVRYKS  266 (316)
Q Consensus       231 ~~r~C~~Cgt~~TP~W--R~GP~G~~~LCNACGl~yk~  266 (316)
                      ..+.|-+|++++.-+|  .-+|.-...||-.|=++||+
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKK  422 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKK  422 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHH
Confidence            3689999999999999  44555666799999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	4e-14
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	2e-11
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPA 276
             +CS+C   +T +WR         CNAC +  +    + + RP 
Sbjct: 8   SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPV 49

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265
            R C +C    TP WR    G   LCNACG+ +K
Sbjct: 4   ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265
             C++C TQ TP WR  P G + LCNACG+  K
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 224 VQSGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265
           +++G       C++C TQ TP WR  P G + LCNACG+  K
Sbjct: 1   MKNGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 41

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 226 SGGGLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265
           S        C++CQT  T  WR    G   +CNACG+ YK
Sbjct: 1   SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 26/161 (16%), Positives = 44/161 (27%), Gaps = 37/161 (22%)

Query: 17  ELSCCLKSTQQVFFDDIPCVSNEDFSVDDLLDFSNGDFEDGSVDDKDYFSSPDPVDDDNN 76
           E     K    VF D       ++F   D+ D          +D      S D V     
Sbjct: 13  EHQYQYKDILSVFEDAF----VDNFDCKDVQDMPKSILSKEEID--HIIMSKDAV----- 61

Query: 77  SNSGSFSSEQSLLTNEFVEPVDDFAELEWVSQFVDDSSCSELSLLYPNY---VERTRSE- 132
                     +L        +    E E V +FV++       +L  NY   +   ++E 
Sbjct: 62  --------SGTLR---LFWTLLSKQE-EMVQKFVEE-------VLRINYKFLMSPIKTEQ 102

Query: 133 --PDGKPVSNKTSTNPTTTTSPCF-PLRVPSKARTKRTRRS 170
             P           +     +  F    V       + R++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.58
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.56
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.55
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.51
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.51
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.38
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.16

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.58  E-value=4.8e-16  Score=117.50  Aligned_cols=43  Identities=40%  Similarity=0.835  Sum_probs=38.0

Q ss_pred             CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 021193          231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC  277 (316)
Q Consensus       231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~  277 (316)
                      ....|.||++++||+||+||+|+ +|||||||+|++++.   +||..
T Consensus         6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~   48 (63)
T 3dfx_A            6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLT   48 (63)
T ss_dssp             TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGG
T ss_pred             CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcC
Confidence            45789999999999999999996 999999999999874   66653

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.56  E-value=1.1e-15  Score=109.05  Aligned_cols=38  Identities=39%  Similarity=0.783  Sum_probs=34.9

Q ss_pred             CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193          231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL  269 (316)
Q Consensus       231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~  269 (316)
                      ..+.|.||++++||+||+||.|+ +|||||||||++++.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   40 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ   40 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence            45789999999999999999995 999999999998773

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.55  E-value=6.1e-16  Score=108.92  Aligned_cols=36  Identities=47%  Similarity=0.979  Sum_probs=33.6

Q ss_pred             CccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193          233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL  269 (316)
Q Consensus       233 r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~  269 (316)
                      +.|+||++++||+||+||+|+ +|||||||+|++++.
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV   37 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence            579999999999999999996 999999999998773

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.51  E-value=2.1e-15  Score=114.85  Aligned_cols=45  Identities=42%  Similarity=0.789  Sum_probs=38.7

Q ss_pred             CCCCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCCC
Q 021193          229 GLFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAC  277 (316)
Q Consensus       229 ~~~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~~  277 (316)
                      .+..+.|+||++++||+||+||.|. +|||||||||++++.   .||..
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~---~RP~~   50 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV---VRPLS   50 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS---CCCGG
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC---CCchh
Confidence            3467999999999999999999995 999999999998663   46654

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.51  E-value=3.3e-15  Score=115.34  Aligned_cols=43  Identities=28%  Similarity=0.511  Sum_probs=35.4

Q ss_pred             CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCC
Q 021193          231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPA  276 (316)
Q Consensus       231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~  276 (316)
                      ....|+||++++||+||+|+.+..+|||||||||++++   .+||.
T Consensus         7 ~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~---~~RP~   49 (71)
T 2kae_A            7 KSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN---KTRPV   49 (71)
T ss_dssp             -CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH---SCCCT
T ss_pred             CCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC---CCCCc
Confidence            45899999999999999965554599999999999876   45664

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.38  E-value=9.5e-14  Score=115.49  Aligned_cols=39  Identities=38%  Similarity=0.833  Sum_probs=35.8

Q ss_pred             CCCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCCC
Q 021193          230 LFQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRL  269 (316)
Q Consensus       230 ~~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~  269 (316)
                      .....|+||+++.||+||+||+| ++|||||||||++++.
T Consensus        57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~   95 (115)
T 4hc9_A           57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI   95 (115)
T ss_dssp             CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence            34589999999999999999999 8999999999998774

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.16  E-value=7.1e-12  Score=104.22  Aligned_cols=37  Identities=41%  Similarity=0.874  Sum_probs=32.9

Q ss_pred             CCCccccccccCCCcccCCCCCChhhhhhhhhhhhcCC
Q 021193          231 FQRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR  268 (316)
Q Consensus       231 ~~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~  268 (316)
                      ..+.|.||++++||+||+|+.| .+|||||||||+.++
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G   40 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG   40 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred             CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence            4689999999999999999999 799999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	2e-13
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	2e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	4e-10

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYK 265
           R C +C    TP WR    G   LCNACG+ +K
Sbjct: 3   RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 235 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPA 276
           C++C TQ TP WR  P G + LCNACG+  K   L    RP 
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPL 40

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.1 bits (127), Expect = 4e-10
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 233 RRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSVDMHSNSHRK 292
             CS+CQT  T  WR  P+G   +CNACG+ YK  ++    RP    T   D     +RK
Sbjct: 5   TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV---NRP---LTMRKDGIQTRNRK 57

Query: 293 VLEMRRKKE 301
           V    +K+ 
Sbjct: 58  VSSKGKKRR 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.64
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.61
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.52

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.3e-17  Score=113.58  Aligned_cols=36  Identities=42%  Similarity=0.893  Sum_probs=33.7

Q ss_pred             CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCC
Q 021193          232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR  268 (316)
Q Consensus       232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~  268 (316)
                      .++|.||++++||+||+||.| ++|||||||||+.++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G   37 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSC
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhC
Confidence            578999999999999999999 799999999999765

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.61  E-value=3.3e-17  Score=113.23  Aligned_cols=39  Identities=49%  Similarity=0.974  Sum_probs=34.8

Q ss_pred             ccccccccCCCcccCCCCCChhhhhhhhhhhhcCCCCCCCCCC
Q 021193          234 RCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPA  276 (316)
Q Consensus       234 ~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~~lp~yrp~  276 (316)
                      .|+||++++||+||+||.| ++|||||||||+.++   .+||.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g---~~RP~   40 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHG---VVRPL   40 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHS---SCCCC
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcC---CCCCC
Confidence            5999999999999999999 799999999999765   45664

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=1.7e-16  Score=119.12  Aligned_cols=36  Identities=47%  Similarity=1.045  Sum_probs=33.5

Q ss_pred             CCccccccccCCCcccCCCCCChhhhhhhhhhhhcCC
Q 021193          232 QRRCSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR  268 (316)
Q Consensus       232 ~r~C~~Cgt~~TP~WR~GP~G~~~LCNACGl~yk~~~  268 (316)
                      ...|+||++++||+||+||.| ++|||||||||++++
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~   39 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQ   39 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhC
Confidence            367999999999999999999 799999999999866