Citrus Sinensis ID: 021356

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MVAGTLPSSPSIPKFSPSPSSETLKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGEREGSLKME
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHccccccccccccccccEEccEEEEcccccEEEEcccHHHHcccHHHHccccEEEEEccccccHHHHccccccccccccccEEEEEEccccccHHHHHHccccccccccccHHHHHHHccEEEEEcccHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccEEEEccccccHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccHHHHHHcccccccccHHcHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccEEEEEccEEEEEEEccHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccHHHccEEEHHHHHHcccEEEEcccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvagtlpsspsipkfspspssetlKGAFKHLNLAFFSSTAKSLRALKTTrgrgsalgaqmasetalktpflldfetSVFKKDAISLANRDEFIVRGGRDLFKllpdafnginqigvigwgsqgpaqAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAgfteengtlgdiyetisgSDLVLLLISDAAQADNYEKIFscmkpnsilglsHGFLLGHLqsigldfpknigviavcpkgmgpsvrRLYVQGkeingaginssfavhqdvdgratNVALGWsvalgspftfATTLEQEyksdifgeregslkme
Flexible Loop (DISEMBL)
mvagtlpsspsipkfspsPSSETLKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKvglrkgsrsfaearaagfteengtlgdIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEyksdifgeregslkme
Low Complexity Region (SEG)
MVAGTLpsspsipkfspspssETLKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIlglshgfllghlQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGEREGSLKME
Disordered region (IsUnstruct)
**************************AFKHLNLAFFSST************************TALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGS******************DIVVKVGLRKG**SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK**************
Disordered Region (DISOPRED)
*************************************************************************FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGEREG*****
Disordered Region (DISEMBL)
**********************TLKGAFKHLNLAFFSSTAKSLRALKTT************SETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGEREGSLKME
Disordered Region (DISPRO)
*********************************************************************FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERE******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVAGTLPSSPSIPKFSPSPSSETLKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGEREGSLKME
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q05758	591	Ketol-acid reductoisomera	yes	no	0.811	0.429	0.866	1e-128
Q01292	595	Ketol-acid reductoisomera	N/A	no	0.907	0.477	0.756	1e-128
O82043	581	Ketol-acid reductoisomera	N/A	no	0.920	0.495	0.788	1e-127
Q65XK0	578	Ketol-acid reductoisomera	yes	no	0.750	0.406	0.897	1e-122
P78827	404	Probable ketol-acid reduc	yes	no	0.607	0.470	0.389	8e-28
P38674	402	Ketol-acid reductoisomera	N/A	no	0.654	0.509	0.378	1e-27
B3QSP0	338	Ketol-acid reductoisomera	yes	no	0.559	0.517	0.365	2e-24
A9BGP6	330	Ketol-acid reductoisomera	yes	no	0.546	0.518	0.366	1e-23
C1DA41	338	Ketol-acid reductoisomera	yes	no	0.559	0.517	0.355	1e-22
Q8DW43	340	Ketol-acid reductoisomera	yes	no	0.546	0.502	0.37	1e-22

>sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/254 (86%), Positives = 236/254 (92%)

Query: 53  GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
           GS+L A+M S +A+K P  LDFETSVFKK+ +SLA  +E+IVRGGRDLFK LPDAF GI 
Sbjct: 61  GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180

Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
           +ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240

Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
           +AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300

Query: 293 TLEQEYKSDIFGER 306
           TLEQEY+SDIFGER
Sbjct: 301 TLEQEYRSDIFGER 314

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6

>sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/304 (75%), Positives = 255/304 (83%), Gaps = 20/304 (6%)

Query: 14  KFSPSPSSETLKGAFKHLNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASET 64
           K SP PS+         LNL F   SST K+ R+LK  R       G GSAL AQM S  
Sbjct: 26  KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76

Query: 65  ALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQ 122
           ++ TP     DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77  SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136

Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
            PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196

Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242
           LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256

Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDI 302
           SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316

Query: 303 FGER 306
           FGER
Sbjct: 317 FGER 320

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/293 (78%), Positives = 248/293 (84%), Gaps = 5/293 (1%)

Query: 18  SPSSETLK----GAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLD 73
           S SS+TL      +F   NL+F   + +S+RA ++    GSALGA   S      P  LD
Sbjct: 13  SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSALGATKVSAPPATHPVSLD 71

Query: 74  FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
           FETSVFKK+ ++LA  +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 72  FETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 131

Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
           L EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQAD
Sbjct: 132 LVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQAD 191

Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
           NYEKIFS +KPNSILGLSHGFLLGHLQSIGLDFPKN  VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 192 NYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKE 251

Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           INGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 252 INGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 304

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1

 Score =  438 bits (1127), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/235 (89%), Positives = 224/235 (95%)

Query: 72  LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
           LDF+TSVF K+ +SLA  +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68  LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127

Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
           DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187

Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
           ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247

Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGER 302

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 113/203 (55%), Gaps = 13/203 (6%)

Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
           L D F   + + +IG+GSQG  Q  N RD        + V VG+RK   S+ +A   G+ 
Sbjct: 78  LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130

Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG 223
               TL  + E I    +++ L+SDAAQ + + KI   +     L  SHGF +       
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189

Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
           +  PK++ VI V PKG G +VR L+ +G+     GINSSFAV+QDV G+A   A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244

Query: 284 LGSPFTFATTLEQEYKSDIFGER 306
           +GS F + TT ++E  SD+ GER
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGER 267

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 14/219 (6%)

Query: 88  NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
           +++E   R      KLL D F   + + +IG+GSQG  Q  NLRD+       + V VG+
Sbjct: 62  HKEEVHERADWPAEKLL-DYFKN-DTLALIGYGSQGHGQGLNLRDN------GLNVIVGV 113

Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
           RK  +S+ +A   G+      L D+ E IS   +V+ L+SDAAQ++ +  I   +     
Sbjct: 114 RKNGKSWEDAIQDGWVP-GKNLFDVDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKT 172

Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
           L  SHGF         ++ P ++ VI V PKG G +VR L+ +G+     GINSSFAV+Q
Sbjct: 173 LYFSHGFSPVFKDLTKVEVPTDVDVILVAPKGSGRTVRSLFREGR-----GINSSFAVYQ 227

Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           DV G+A   A+   VA+GS + + TT E+E  SD++GER
Sbjct: 228 DVTGKAKEKAVALGVAVGSGYLYETTFEKEVYSDLYGER 266

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/197 (36%), Positives = 106/197 (53%), Gaps = 22/197 (11%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           +I V+G+GSQG A A NL+DS       + V VGL++ S S+ +A  AG   E       
Sbjct: 18  KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67

Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
            E +  +D++++LI D  Q   YE  I   +KP   L   HGF + + Q +    P N+ 
Sbjct: 68  -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
           VI + PK  G  VRR +V+G     AG+    AVHQ+VDG+A ++AL W+  LG      
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178

Query: 290 FATTLEQEYKSDIFGER 306
             T  + E ++D+FGE+
Sbjct: 179 IETNFKDETETDLFGEQ 195

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 28/199 (14%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
           I V+G+GSQG AQAQNL+DS       + V +GL+K S+S   A+  GF        ++Y
Sbjct: 20  IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65

Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN 229
           ET   +   D++ +LI D  Q++ Y+K I   +   + LG SHGF +   Q +    PKN
Sbjct: 66  ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122

Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
           + V  V PK  G  VRR+Y++GK     G+    AVHQD  G+A  + L ++  +G    
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177

Query: 289 -TFATTLEQEYKSDIFGER 306
               TT ++E ++D+FGE+
Sbjct: 178 GVIKTTFKEETETDLFGEQ 196

Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|C1DA41|ILVC_LARHH Ketol-acid reductoisomerase OS=Laribacter hongkongensis (strain HLHK9) GN=ilvC PE=3 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 22/197 (11%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++ +IG+GSQG A AQNL++S       + V VGLRK   S+ +A AAG T     + ++
Sbjct: 18  KVAIIGYGSQGHAHAQNLKES------GVDVIVGLRKDGASWKKAEAAGHT-----VKEV 66

Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
            E +  +D+V++L+ D  Q D Y   I   +K  + L  +HGF + + Q +    P +I 
Sbjct: 67  GEAVKTADVVMILLPDETQPDVYRNDIAPNLKKGAALAFAHGFNIHYNQIVP---PADID 123

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--T 289
           VI + PKG G +VR  +++G      G+ S  AV+QD  GRA +VAL ++ A G      
Sbjct: 124 VIMIAPKGPGHTVRSEFLKG-----GGVPSLIAVYQDHSGRARDVALSYAAANGGTKGGV 178

Query: 290 FATTLEQEYKSDIFGER 306
             T+  +E ++D+FGE+
Sbjct: 179 IETSFREETETDLFGEQ 195

Laribacter hongkongensis (strain HLHK9) (taxid: 557598)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

>sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 29/200 (14%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLGD 171
           +I VIG+GSQG A AQNLRDS      D++  +G+R G +SF +A+  GF T E G    
Sbjct: 20  KIAVIGYGSQGHAHAQNLRDS----GHDVI--IGVRHG-KSFDKAKEDGFDTYEVG---- 68

Query: 172 IYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFPK 228
             E    +D++++L  D  Q D Y ++I   +     LG +HGF +  G++++     P+
Sbjct: 69  --EATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA-----PE 121

Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
           ++ V  V PKG G  VRR Y +     G G+ S +AV+Q+  G A N+AL W+  +GS  
Sbjct: 122 DVDVFMVAPKGPGHLVRRTYTE-----GFGVPSLYAVYQNPTGNAENIALDWAKGIGSAR 176

Query: 289 T--FATTLEQEYKSDIFGER 306
                TT ++E + D+FGE+
Sbjct: 177 VGLLVTTFKEETEEDLFGEQ 196

Streptococcus mutans (taxid: 1309)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
225446579	588	PREDICTED: ketol-acid reductoisomerase,	0.913	0.486	0.822	1e-131
295291644	587	ketol-acid reductoisomerase [Catharanthu	0.878	0.468	0.832	1e-130
255568281	584	ketol-acid reductoisomerase, chloroplast	0.853	0.457	0.858	1e-129
224079219	589	predicted protein [Populus trichocarpa]	0.878	0.466	0.824	1e-128
341958461	587	chloroplast acetohydroxy acid isomerored	0.891	0.475	0.819	1e-127
356549858	586	PREDICTED: ketol-acid reductoisomerase,	0.891	0.476	0.819	1e-127
356543900	586	PREDICTED: ketol-acid reductoisomerase,	0.891	0.476	0.816	1e-126
297817174	594	ketol-acid reductoisomerase [Arabidopsis	0.811	0.427	0.870	1e-126
15231092	591	ketol-acid reductoisomerase [Arabidopsis	0.811	0.429	0.866	1e-126
266346	595	RecName: Full=Ketol-acid reductoisomeras	0.907	0.477	0.756	1e-126

>gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 259/293 (88%), Gaps = 7/293 (2%)

Query: 21  SETLKGAFKHL--NLAFFSSTA-KSLRA--LKTTR--GRGSALGAQMASETALKTPFLLD 73
           ++TLK    +L  NL F SS A +SLRA  L T+   G GSAL A+M S   +K P LLD
Sbjct: 19  TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78

Query: 74  FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
           FETSVFKK+ +SLA  DE+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79  FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138

Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
           L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198

Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
           NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258

Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           +NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGER 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/281 (83%), Positives = 250/281 (88%), Gaps = 6/281 (2%)

Query: 32  NLAFFSSTAKSL-----RALKTTRGRGSALGAQMASE-TALKTPFLLDFETSVFKKDAIS 85
           NL+F SS+  SL     RA   T   GSA+ A+M S   A+K P  LDFETSVFKK+ I+
Sbjct: 31  NLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTNLDFETSVFKKEKIN 90

Query: 86  LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145
           LA  +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAE KSDI+VK+
Sbjct: 91  LAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAETKSDILVKI 150

Query: 146 GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205
           GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQADNYE++FS MKPN
Sbjct: 151 GLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQADNYEQVFSHMKPN 210

Query: 206 SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
           SILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV
Sbjct: 211 SILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 270

Query: 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           HQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 271 HQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGER 311

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/268 (85%), Positives = 246/268 (91%), Gaps = 1/268 (0%)

Query: 40  AKSLRALKTTRGRGSALGA-QMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGR 98
           +KS ++L+   G GSA+GA  M S  A+K    LDFET+VFKK+ ISLA  DE+IVRGGR
Sbjct: 40  SKSFKSLRANGGGGSAVGACSMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGR 99

Query: 99  DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158
           DLFKLLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR
Sbjct: 100 DLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEAR 159

Query: 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGH 218
           +AGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGH
Sbjct: 160 SAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGH 219

Query: 219 LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVAL 278
           LQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VAL
Sbjct: 220 LQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL 279

Query: 279 GWSVALGSPFTFATTLEQEYKSDIFGER 306
           GWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 280 GWSVALGSPFTFATTLEQEYKSDIFGER 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/279 (82%), Positives = 249/279 (89%), Gaps = 4/279 (1%)

Query: 32  NLAFFSS-TAKSLRALKTTRGR--GSALGAQMASETALKTPFL-LDFETSVFKKDAISLA 87
           NL F SS ++K+ + LK + G   G  LGA+M S      P + LDFETSVFKK+ +SLA
Sbjct: 34  NLGFSSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLA 93

Query: 88  NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
             DE+IVRGGRDLF LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GL
Sbjct: 94  GHDEYIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGL 153

Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
           RKGSRSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSI
Sbjct: 154 RKGSRSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSI 213

Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
           LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQ
Sbjct: 214 LGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQ 273

Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           DVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGER
Sbjct: 274 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGER 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/283 (81%), Positives = 252/283 (89%), Gaps = 4/283 (1%)

Query: 28  FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
           F   NLA  SS++K    SLR  +     GSALGA+M S  A+K P LLDF+T VFKK+ 
Sbjct: 28  FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87

Query: 84  ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
           I+LA  DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88  INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147

Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
           K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207

Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
           PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267

Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGER
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGER 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/283 (81%), Positives = 252/283 (89%), Gaps = 4/283 (1%)

Query: 28  FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
           F   NLA  SS++K    SLR  +     GSALGA+M S  A+K P LLDF+T VFKK+ 
Sbjct: 28  FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87

Query: 84  ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
           I+LA  DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88  INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147

Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
           K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207

Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
           PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267

Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGER
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGER 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/283 (81%), Positives = 252/283 (89%), Gaps = 4/283 (1%)

Query: 28  FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
           F   NLA  SS++K    SL+  +     GSALGA+M S  A+K P LLDF+T VFKK+ 
Sbjct: 28  FSATNLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEK 87

Query: 84  ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
           I+LA  DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88  INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147

Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
           K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207

Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
           PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267

Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGER
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGER 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/254 (87%), Positives = 235/254 (92%)

Query: 53  GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
           GS+L A+M S +A+K P  LDFETSVFKK+ +SLA  +E+IVRGGRDLFK LPDAF GI 
Sbjct: 64  GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183

Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
           +ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243

Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
           +AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303

Query: 293 TLEQEYKSDIFGER 306
           TLEQEY+SDIFGER
Sbjct: 304 TLEQEYRSDIFGER 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/254 (86%), Positives = 236/254 (92%)

Query: 53  GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
           GS+L A+M S +A+K P  LDFETSVFKK+ +SLA  +E+IVRGGRDLFK LPDAF GI 
Sbjct: 61  GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180

Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
           +ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240

Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
           +AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300

Query: 293 TLEQEYKSDIFGER 306
           TLEQEY+SDIFGER
Sbjct: 301 TLEQEYRSDIFGER 314

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|266346|sp|Q01292.1|ILV5_SPIOL RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|21234|emb|CAA40356.1| acetohydroxy acid reductoisomerase [Spinacia oleracea]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/304 (75%), Positives = 255/304 (83%), Gaps = 20/304 (6%)

Query: 14  KFSPSPSSETLKGAFKHLNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASET 64
           K SP PS+         LNL F   SST K+ R+LK  R       G GSAL AQM S  
Sbjct: 26  KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76

Query: 65  ALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQ 122
           ++ TP     DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77  SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136

Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
            PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196

Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242
           LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256

Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDI 302
           SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316

Query: 303 FGER 306
           FGER
Sbjct: 317 FGER 320

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2076371	591	AT3G58610 [Arabidopsis thalian	0.878	0.465	0.784	4.8e-110
UNIPROTKB|Q01292	595	AHRI "Ketol-acid reductoisomer	0.881	0.463	0.742	1.9e-106
UNIPROTKB|Q65XK0	578	LOC_Os05g49800 "Ketol-acid red	0.814	0.441	0.796	2.6e-102
POMBASE|SPBC56F2.12	404	ilv5 "acetohydroxyacid reducto	0.607	0.470	0.364	5.9e-25
ASPGD|ASPL0000041782	400	AN2526 [Emericella nidulans (t	0.670	0.525	0.331	1.4e-23
CGD|CAL0000685	400	ILV5 [Candida albicans (taxid:	0.686	0.537	0.343	7.3e-23
UNIPROTKB|G4MW52	400	MGG_15774 "Ketol-acid reductoi	0.578	0.452	0.341	9.8e-23
SGD|S000004347	395	ILV5 "Acetohydroxyacid reducto	0.610	0.483	0.346	1.8e-21
TIGR_CMR|CHY_0519	330	CHY_0519 "ketol-acid reductois	0.565	0.536	0.328	5.8e-15
UNIPROTKB|P65149	333	ilvC "Ketol-acid reductoisomer	0.562	0.528	0.306	1.6e-10

TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 219/279 (78%), Positives = 239/279 (85%)

Query:    32 NLAFFSSTAKSLRALKTT-RGRG---SALGAQMASETALKTPFLLDFETSVFKKDAISLA 87
             N+ F SS++KSLR+L  T  G G   S+L A+M S +A+K P  LDFETSVFKK+ +SLA
Sbjct:    36 NIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLA 95

Query:    88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
               +E+IVRGGRDLFK LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GL
Sbjct:    96 GYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGL 155

Query:   148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
             RKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI
Sbjct:   156 RKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSI 215

Query:   208 XXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
                         QS GLDFPKNI V+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct:   216 LGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275

Query:   268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
             DVDGRA +VALGWSVALGSPFTFATTLEQEY+SDIFGER
Sbjct:   276 DVDGRAADVALGWSVALGSPFTFATTLEQEYRSDIFGER 314

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA;ISS

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 213/287 (74%), Positives = 237/287 (82%)

Query:    31 LNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASETALKTPFL--LDFETSVF 79
             LNL F   SST K+ R+LK  R       G GSAL AQM S  ++ TP     DF++SVF
Sbjct:    34 LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVF 93

Query:    80 KKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139
             KK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKS
Sbjct:    94 KKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKS 153

Query:   140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
             D+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+F
Sbjct:   154 DVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVF 213

Query:   200 SCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
             S MKPNSI            QS+G DFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGI
Sbjct:   214 SHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGI 273

Query:   260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
             NSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDIFGER
Sbjct:   274 NSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGER 320

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0070402 "NADPH binding" evidence=IDA

UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 204/256 (79%), Positives = 221/256 (86%)

Query:    52 RGSALGAQMASETALKTPF-LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNG 110
             R  A+ A +A+  A+      LDF+TSVF K+ +SLA  +E+IVRGGR+LF LLP+AF G
Sbjct:    47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106

Query:   111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
             I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct:   107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166

Query:   171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNI 230
             DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI
Sbjct:   167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226

Query:   231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
              VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct:   227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286

Query:   291 ATTLEQEYKSDIFGER 306
             ATTLEQEYKSDIFGER
Sbjct:   287 ATTLEQEYKSDIFGER 302

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0070402 "NADPH binding" evidence=IDA

POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 74/203 (36%), Positives = 107/203 (52%)

Query:   104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
             L D F   + + +IG+GSQG  Q  N RD        + V VG+RK   S+ +A   G+ 
Sbjct:    78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130

Query:   164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG 223
                 TL  + E I    +++ L+SDAAQ + + KI   +                     
Sbjct:   131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189

Query:   224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
             +  PK++ VI V PKG G +VR L+ +G+     GINSSFAV+QDV G+A   A+G +VA
Sbjct:   190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244

Query:   284 LGSPFTFATTLEQEYKSDIFGER 306
             +GS F + TT ++E  SD+ GER
Sbjct:   245 VGSGFIYQTTFKKEVISDLVGER 267

GO:0000002 "mitochondrial genome maintenance" evidence=ISS

GO:0004455 "ketol-acid reductoisomerase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0006551 "leucine metabolic process" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 74/223 (33%), Positives = 112/223 (50%)

Query:    84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
             IS A+  E +        + L + F   + + +IG+GSQG  Q  NLRD        + V
Sbjct:    55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107

Query:   144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
              VG+RK   S+ EA   G+      L ++ E +    +V+ L+SDAAQ++ +  +   + 
Sbjct:   108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166

Query:   204 PNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
                             +   +D P ++ VI V PKG G +VR L+ +G+     GINSS 
Sbjct:   167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221

Query:   264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
             AV QDV G A   A+   VA+GS + + TT E+E  SD++GER
Sbjct:   222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGER 264

GO:0009081 "branched-chain amino acid metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA;ISA;RCA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;ISA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)]

 Score = 265 (98.3 bits), Expect = 7.3e-23, P = 7.3e-23
 Identities = 80/233 (34%), Positives = 120/233 (51%)

Query:    76 TSVFKKDAISLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSL 134
             TS+     I+    +E +V    D  K  L D F   +   +IG+GSQG  Q  NLRD+ 
Sbjct:    49 TSIRGVKTINFGGTEE-VVHERADWPKERLLDYFKN-DTFALIGYGSQGYGQGLNLRDN- 105

Query:   135 AEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLISDAAQAD 193
                   + V +G+RKGS S+  A   G+   EN  L ++ E IS   +++ L+SDAAQ++
Sbjct:   106 -----GLNVIIGVRKGS-SWEAAVEDGWVPGEN--LFEVDEAISRGTIIMDLLSDAAQSE 157

Query:   194 NYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
              +  I   +                     ++ P NI VI   PKG G +VR L+ +G+ 
Sbjct:   158 TWFHIKPQLTEGKTLYFSHGFSPVFKDLTHVEPPSNIDVILAAPKGSGRTVRSLFKEGR- 216

Query:   254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
                 GINSS+AV  DV G+A   A+  ++A+GS + + TT E+E  SD++GER
Sbjct:   217 ----GINSSYAVWNDVTGKAEEKAIAMAIAIGSGYVYKTTFEREVNSDLYGER 265

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 264 (98.0 bits), Expect = 9.8e-23, P = 9.8e-23
 Identities = 66/193 (34%), Positives = 104/193 (53%)

Query:   114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
             + +IG+GSQG  Q  NLRD+       + V +G+RK  +S+ +A   G+      L ++ 
Sbjct:    84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136

Query:   174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVI 233
             E IS   +++ L+SDAAQ++ +  +   +                     ++ P ++ VI
Sbjct:   137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196

Query:   234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
                PKG G +VR L+ +G+     GINSSFAV+QDV G A   A+   VA+GS + + TT
Sbjct:   197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251

Query:   294 LEQEYKSDIFGER 306
              E+E  SD++GER
Sbjct:   252 FEKEVYSDLYGER 264

GO:0043581 "mycelium development" evidence=IEP

SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 253 (94.1 bits), Expect = 1.8e-21, P = 1.8e-21
 Identities = 71/205 (34%), Positives = 105/205 (51%)

Query:   102 KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161
             KLL D F   +   +IG+GSQG  Q  NLRD+       + V +G+RK   S+  A   G
Sbjct:    70 KLL-DYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDG 121

Query:   162 FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQS 221
             +      L  + + I     V+ L+SDAAQ++ +  I   +                   
Sbjct:   122 WVPGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDL 180

Query:   222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWS 281
               ++ PK++ VI V PKG G +VR L+ +G+     GINSS+AV  DV G+A   A   +
Sbjct:   181 THVEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALA 235

Query:   282 VALGSPFTFATTLEQEYKSDIFGER 306
             VA+GS + + TT E+E  SD++GER
Sbjct:   236 VAIGSGYVYQTTFEREVNSDLYGER 260

GO:0000002 "mitochondrial genome maintenance" evidence=IGI;IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA;IMP

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0009097 "isoleucine biosynthetic process" evidence=IEA

GO:0009099 "valine biosynthetic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 202 (76.2 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 64/195 (32%), Positives = 96/195 (49%)

Query:   113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
             +I +IG+GSQG AQAQNL+DS       + V VGL K S+S  +A A GFT     +  +
Sbjct:    19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67

Query:   173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIG 231
              E    +D++ +L+ D  Q + Y +KI   +KP               Q +    P ++ 
Sbjct:    68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124

Query:   232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
             V  V PK  G  VRR+Y++GK + G       A  +  D  A   A G  +       F 
Sbjct:   125 VFLVAPKSPGHLVRRMYLEGKGVPGLIAVYQDATGKAKD-LALAYAKG--IGCTRAGVFE 181

Query:   292 TTLEQEYKSDIFGER 306
             TT ++E ++D+FGE+
Sbjct:   182 TTFKEETETDLFGEQ 196

GO:0004455 "ketol-acid reductoisomerase activity" evidence=ISS

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=ISS

UNIPROTKB|P65149 ilvC "Ketol-acid reductoisomerase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 169 (64.5 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 60/196 (30%), Positives = 92/196 (46%)

Query:   113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
             ++GVIG+GSQG A + +LRDS       + V+VGL++GSRS  +    G   +       
Sbjct:    16 KVGVIGYGSQGHAHSLSLRDS------GVQVRVGLKQGSRSRPKVEEQGLDVDTPA---- 65

Query:   173 YETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSIXXXXXXXXXXXXQSIGL-DFPKNI 230
              E    +D+V++L  D AQA+    IF+  ++PN                 GL   P ++
Sbjct:    66 -EVAKWADVVMVLAPDTAQAE----IFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADV 120

Query:   231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
              V  V PKG G  VRR +V GK   G     +       DG A  ++   ++        
Sbjct:   121 AVAMVAPKGPGHLVRRQFVDGK---GVPCLVAVEQDPRGDGLALALSYAKAIGGTRAGVI 177

Query:   291 ATTLEQEYKSDIFGER 306
              TT + E ++D+FGE+
Sbjct:   178 KTTFKDETETDLFGEQ 193

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05758	ILV5_ARATH	1, ., 1, ., 1, ., 8, 6	0.8661	0.8115	0.4297	yes	no
Q65XK0	ILV5_ORYSJ	1, ., 1, ., 1, ., 8, 6	0.8978	0.7507	0.4065	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
4th Layer	1.1.1.86	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
COG0059	338	COG0059, IlvC, Ketol-acid reductoisomerase [Amino	5e-46
TIGR00465	314	TIGR00465, ilvC, ketol-acid reductoisomerase	5e-43
pfam07991	165	pfam07991, IlvN, Acetohydroxy acid isomeroreductas	8e-42
PRK05479	330	PRK05479, PRK05479, ketol-acid reductoisomerase; P	9e-41
PRK13403	335	PRK13403, PRK13403, ketol-acid reductoisomerase; P	5e-22
PRK05225	487	PRK05225, PRK05225, ketol-acid reductoisomerase; V	2e-17

>gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  158 bits (401), Expect = 5e-46
 Identities = 76/202 (37%), Positives = 114/202 (56%), Gaps = 32/202 (15%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++ +IG+GSQG AQA NLRDS         V +GLRKGS S+ +A+  GF      +  +
Sbjct: 20  KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68

Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI---GLDFPK 228
            E    +D+V++L+ D  Q + YEK I   +K  + LG +HGF      +I    +  PK
Sbjct: 69  EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGF------NIHFGLIVPPK 122

Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
           ++ VI V PKG G  VRR Y +G      G+ +  AVHQD  G+A ++AL ++  +G   
Sbjct: 123 DVDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG-- 175

Query: 289 TFA----TTLEQEYKSDIFGER 306
           T A    TT ++E ++D+FGE+
Sbjct: 176 TRAGVIETTFKEETETDLFGEQ 197

Length = 338

>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase

 Score =  149 bits (379), Expect = 5e-43
 Identities = 74/197 (37%), Positives = 107/197 (54%), Gaps = 22/197 (11%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
            + +IG+GSQG AQA NLRDS       + V VGLRKG  S+ +A   GF      +G +
Sbjct: 5   TVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTV 53

Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
            E I  +DL++ L+ D  Q + YE  I   +K    LG SHGF   ++  + +  PK++ 
Sbjct: 54  EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
           V+ V PKG G  VR  Y +G      G+ +  AV QD  G A  +AL ++ A+G      
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165

Query: 290 FATTLEQEYKSDIFGER 306
             TT ++E +SD+FGE+
Sbjct: 166 LETTFKEETESDLFGEQ 182

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314

>gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain

 Score =  142 bits (360), Expect = 8e-42
 Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           +I VIG+GSQG A A NLRDS         V VGLR GS+S+ +A+  GF      +  +
Sbjct: 6   KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54

Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
            E +  +D+V++L+ D  QA+ YEK I   +K  + L  +HGF   ++    +  PK++ 
Sbjct: 55  AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
           VI V PKG G  VRR Y +G      G+ +  AVHQD  G+A ++AL ++  +G 
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161

Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165

>gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional

 Score =  144 bits (366), Expect = 9e-41
 Identities = 74/201 (36%), Positives = 111/201 (55%), Gaps = 32/201 (15%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++ +IG+GSQG A A NLRDS  +      V VGLR+GS+S+ +A A GF      +  +
Sbjct: 19  KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67

Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI--GL-DFPK 228
            E    +D++++L+ D  QA+ YE+ I   +K  + L  +HGF      +I  G    P 
Sbjct: 68  AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGF------NIHFGQIVPPA 121

Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
           ++ VI V PKG G  VRR Y +G      G+    AVHQD  G A ++AL ++  +G   
Sbjct: 122 DVDVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG-- 174

Query: 289 TFA----TTLEQEYKSDIFGE 305
           T A    TT ++E ++D+FGE
Sbjct: 175 TRAGVIETTFKEETETDLFGE 195

Length = 330

>gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional

 Score = 94.0 bits (233), Expect = 5e-22
 Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 23/196 (11%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
           + VIG+GSQG AQAQNLRDS  E      V VG+R G +SF  A+A GF      +  + 
Sbjct: 19  VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGF-----EVMSVS 66

Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
           E +  + +V +L+ D  QA  Y+ ++   ++   +L  SHGF +   Q   ++ P  + V
Sbjct: 67  EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123

Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
             V PK  G  VRR++ +G      G+ +  AVHQD  G A +VAL ++  +G       
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178

Query: 291 ATTLEQEYKSDIFGER 306
            TT ++E ++D+FGE+
Sbjct: 179 ETTFQEETETDLFGEQ 194

Length = 335

>gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 67/200 (33%), Positives = 93/200 (46%), Gaps = 26/200 (13%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
           I ++G G+QG  Q  N+RDS       + +   LRK +   AE RA+    TE    +G 
Sbjct: 39  IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90

Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
             E I  +DLV+ L  D   +D    +   MK  + LG SHGF   ++  +G    K+I 
Sbjct: 91  YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
           V+ V PK  G  VR  Y +     G G+ +  AVH + D  G    +A  W+ A G    
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200

Query: 290 FATTLEQ----EYKSDIFGE 305
            A  LE     E KSD+ GE
Sbjct: 201 RAGVLESSFVAEVKSDLMGE 220

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PRK05225	487	ketol-acid reductoisomerase; Validated	100.0
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	100.0
PRK13403	335	ketol-acid reductoisomerase; Provisional	100.0
PRK05479	330	ketol-acid reductoisomerase; Provisional	100.0
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	100.0
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.98
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.87
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.83
PRK07417	279	arogenate dehydrogenase; Reviewed	99.83
PRK06545	359	prephenate dehydrogenase; Validated	99.82
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.81
PLN02256	304	arogenate dehydrogenase	99.81
PRK08507	275	prephenate dehydrogenase; Validated	99.8
PRK08818	370	prephenate dehydrogenase; Provisional	99.79
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.78
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.77
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.77
PLN02688	266	pyrroline-5-carboxylate reductase	99.77
PRK08655	437	prephenate dehydrogenase; Provisional	99.75
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.74
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.71
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.71
PLN02712	667	arogenate dehydrogenase	99.7
PLN02712	667	arogenate dehydrogenase	99.68
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.67
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.66
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.64
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.63
PRK07680	273	late competence protein ComER; Validated	99.63
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.62
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.58
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.57
PRK06932	314	glycerate dehydrogenase; Provisional	99.57
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.56
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.56
PRK06436	303	glycerate dehydrogenase; Provisional	99.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.55
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.55
PRK13243	333	glyoxylate reductase; Reviewed	99.54
PRK07574	385	formate dehydrogenase; Provisional	99.53
PRK06487	317	glycerate dehydrogenase; Provisional	99.53
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.52
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.5
PLN03139	386	formate dehydrogenase; Provisional	99.5
PLN02928	347	oxidoreductase family protein	99.5
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.47
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.47
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.46
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.45
PRK12480	330	D-lactate dehydrogenase; Provisional	99.44
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.43
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.43
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.43
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.42
PRK06444	197	prephenate dehydrogenase; Provisional	99.42
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.42
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.42
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	99.4
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.39
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.38
PLN02306	386	hydroxypyruvate reductase	99.38
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	99.36
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.36
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.34
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.33
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.33
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.32
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.31
PRK08605	332	D-lactate dehydrogenase; Validated	99.3
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.29
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.29
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.27
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.23
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.23
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.21
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.2
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.19
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.19
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	99.18
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.17
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.16
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.16
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.14
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.13
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.13
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.11
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.1
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.09
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	99.09
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.06
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.01
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.0
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.94
PLN02858	1378	fructose-bisphosphate aldolase	98.93
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.92
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.9
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.88
PLN02858	1378	fructose-bisphosphate aldolase	98.88
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.87
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.85
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.83
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.79
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.78
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.78
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.76
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.75
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.75
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.73
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.73
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.72
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.71
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.68
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.64
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.61
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.6
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.57
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.52
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.51
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.5
PLN02494	477	adenosylhomocysteinase	98.48
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.46
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.41
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.4
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.4
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.37
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.37
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.35
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.33
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.31
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.31
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.31
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.22
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.18
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.17
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.17
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.17
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.1
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.08
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.05
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.05
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.03
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.99
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.95
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.92
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.88
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.85
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.83
PRK06141	314	ornithine cyclodeaminase; Validated	97.8
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.76
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.75
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.74
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.72
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.72
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.7
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.68
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.66
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.59
PLN00203	519	glutamyl-tRNA reductase	97.58
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.55
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.54
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.52
PRK07340	304	ornithine cyclodeaminase; Validated	97.51
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.51
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.47
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.46
PRK06223	307	malate dehydrogenase; Reviewed	97.46
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.36
PRK08618	325	ornithine cyclodeaminase; Validated	97.36
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.35
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.34
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.34
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.32
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.3
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.3
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.28
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.28
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.27
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.27
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.27
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.27
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.27
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	97.26
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.26
PRK06046	326	alanine dehydrogenase; Validated	97.25
PRK07589	346	ornithine cyclodeaminase; Validated	97.24
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.21
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.2
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.2
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	97.19
COG5495	289	Uncharacterized conserved protein [Function unknow	97.18
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.17
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.16
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.15
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.08
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.07
PRK06407	301	ornithine cyclodeaminase; Provisional	97.06
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.04
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.03
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.02
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.99
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.99
PRK06823	315	ornithine cyclodeaminase; Validated	96.98
PRK08291	330	ectoine utilization protein EutC; Validated	96.98
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.96
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.95
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	96.95
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.94
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.94
PTZ00117	319	malate dehydrogenase; Provisional	96.93
PRK09496	453	trkA potassium transporter peripheral membrane com	96.9
PRK11579	346	putative oxidoreductase; Provisional	96.86
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.85
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.84
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.83
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.81
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.76
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.76
PRK14982	340	acyl-ACP reductase; Provisional	96.75
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.75
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.74
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	96.68
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.67
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.67
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.67
PRK10206	344	putative oxidoreductase; Provisional	96.66
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.66
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	96.66
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	96.66
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.65
PRK04148	134	hypothetical protein; Provisional	96.65
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.63
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.62
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.62
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.61
PRK06199	379	ornithine cyclodeaminase; Validated	96.6
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.58
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.58
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.53
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.51
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.48
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.46
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.46
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.46
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.45
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.44
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.44
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.43
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.42
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.41
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	96.39
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.37
PRK10669	558	putative cation:proton antiport protein; Provision	96.32
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.32
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.29
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.26
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.17
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.17
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	96.17
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.15
PRK09496	453	trkA potassium transporter peripheral membrane com	96.12
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.1
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.08
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.05
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	96.04
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.01
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.93
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	95.92
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.91
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.87
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.86
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.85
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.71
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.71
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.68
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.68
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.67
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	95.64
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.61
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.6
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.57
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.55
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	95.54
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.53
PRK05442	326	malate dehydrogenase; Provisional	95.49
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.44
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.42
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	95.38
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.3
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.29
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.28
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	95.27
KOG0067	435	consensus Transcription factor CtBP [Transcription	95.25
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.24
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.24
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	95.21
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	95.2
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.19
PTZ00325	321	malate dehydrogenase; Provisional	95.15
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.11
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.01
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.0
PLN02383	344	aspartate semialdehyde dehydrogenase	95.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.96
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.93
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.92
COG2344	211	AT-rich DNA-binding protein [General function pred	94.92
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	94.91
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.91
PRK05086	312	malate dehydrogenase; Provisional	94.9
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.87
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.8
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.77
PLN02602	350	lactate dehydrogenase	94.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.76
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	94.74
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.7
PRK06270	341	homoserine dehydrogenase; Provisional	94.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.62
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.6
COG2910	211	Putative NADH-flavin reductase [General function p	94.55
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.52
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.43
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.42
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.42
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.39
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	94.36
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.35
PLN00112	444	malate dehydrogenase (NADP); Provisional	94.32
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.28
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.26
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.21
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.19
PRK06349	426	homoserine dehydrogenase; Provisional	93.99
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.97
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.91
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.89
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.88
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	93.86
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.86
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.83
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.82
PRK00779	304	ornithine carbamoyltransferase; Provisional	93.8
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.79
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.78
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.73
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.69
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	93.64
PRK09414	445	glutamate dehydrogenase; Provisional	93.63
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	93.58
PLN00106	323	malate dehydrogenase	93.58
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	93.58
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	93.56
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	93.56
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	93.55
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	93.54
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.54
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.49
PRK10537	393	voltage-gated potassium channel; Provisional	93.49
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	93.48
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	93.48
PLN03075	296	nicotianamine synthase; Provisional	93.47
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	93.37
PRK15076	431	alpha-galactosidase; Provisional	93.36
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.34
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.34
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.34
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.32
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.3
PRK08328	231	hypothetical protein; Provisional	93.27
PLN02527	306	aspartate carbamoyltransferase	93.22
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.22
PRK04284	332	ornithine carbamoyltransferase; Provisional	93.19
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	93.16
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	93.11
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	93.07
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.92
PRK14804	311	ornithine carbamoyltransferase; Provisional	92.91
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	92.8
PRK07806	248	short chain dehydrogenase; Provisional	92.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.7
PRK02255	338	putrescine carbamoyltransferase; Provisional	92.58
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	92.54
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	92.47
CHL00194	317	ycf39 Ycf39; Provisional	92.45
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	92.43
PRK01713	334	ornithine carbamoyltransferase; Provisional	92.43
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.21
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.09
PRK08374	336	homoserine dehydrogenase; Provisional	92.08
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.07
PRK02102	331	ornithine carbamoyltransferase; Validated	92.02
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.99
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	91.88
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.87
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	91.82
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	91.82
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	91.8
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	91.77
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	91.74
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	91.73
PRK11891	429	aspartate carbamoyltransferase; Provisional	91.71
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	91.7
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	91.63
PRK06392	326	homoserine dehydrogenase; Provisional	91.56
PLN02342	348	ornithine carbamoyltransferase	91.56
PRK01581	374	speE spermidine synthase; Validated	91.54
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	91.53
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.45
PLN02477	410	glutamate dehydrogenase	91.36
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	91.32
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	91.29
PRK10637	457	cysG siroheme synthase; Provisional	91.28
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	91.27
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	91.2
PRK08223	287	hypothetical protein; Validated	91.2
PRK14031	444	glutamate dehydrogenase; Provisional	91.1
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.89
PRK08265	261	short chain dehydrogenase; Provisional	90.88
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	90.76
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.74
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.67
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.64
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	90.59
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.55
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.53
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	90.5
PRK06153	393	hypothetical protein; Provisional	90.46
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	90.42
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	90.38
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	90.31
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	90.3
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.29
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	89.94
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	89.91
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	89.89
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	89.88
PRK06057	255	short chain dehydrogenase; Provisional	89.86
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.68
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	89.66
PRK07411	390	hypothetical protein; Validated	89.63
PRK05867	253	short chain dehydrogenase; Provisional	89.58
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	89.52
PRK05717	255	oxidoreductase; Validated	89.35
PRK07825	273	short chain dehydrogenase; Provisional	89.33
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.29
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	89.24
PLN02740	381	Alcohol dehydrogenase-like	89.18
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	89.16
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	89.11
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	89.1
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	89.09
PRK10083	339	putative oxidoreductase; Provisional	89.05
PLN02827	378	Alcohol dehydrogenase-like	88.93
PRK07523	255	gluconate 5-dehydrogenase; Provisional	88.91
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	88.91
PRK07774	250	short chain dehydrogenase; Provisional	88.79
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	88.76
PRK09242	257	tropinone reductase; Provisional	88.62
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.5
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	88.5
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	88.49
PRK06138	252	short chain dehydrogenase; Provisional	88.41
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	88.37
PRK12828	239	short chain dehydrogenase; Provisional	88.35
PLN02948	577	phosphoribosylaminoimidazole carboxylase	88.33
PRK13984	604	putative oxidoreductase; Provisional	88.32
PRK08192	338	aspartate carbamoyltransferase; Provisional	88.31
PRK12814	652	putative NADPH-dependent glutamate synthase small	88.22
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	88.21
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	88.16
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.15
PRK06500	249	short chain dehydrogenase; Provisional	88.14
PLN02214	342	cinnamoyl-CoA reductase	88.13
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	88.13
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	88.12
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	88.05
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.04
PRK06197	306	short chain dehydrogenase; Provisional	87.96
PRK07060	245	short chain dehydrogenase; Provisional	87.74
PRK12937	245	short chain dehydrogenase; Provisional	87.66
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	87.63
PRK07478	254	short chain dehydrogenase; Provisional	87.61
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.59
PRK06114	254	short chain dehydrogenase; Provisional	87.56
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.52
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	87.51
PLN03209	576	translocon at the inner envelope of chloroplast su	87.44
PRK05876	275	short chain dehydrogenase; Provisional	87.36
PLN02702	364	L-idonate 5-dehydrogenase	87.29

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=100.00  E-value=9e-43  Score=344.78  Aligned_cols=218  Identities=33%  Similarity=0.495  Sum_probs=197.0

Q ss_pred             ccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356           71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus        71 ~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ++|||+++||++.++|..-. . +.  |-.|+++...|+| ++|+|||+|+||.++|.+|+++      |++|+++.|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~r-~-~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~   69 (487)
T PRK05225          1 ANYFNTLNLRQQLAQLGKCR-F-MD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE   69 (487)
T ss_pred             CCccccccHHHHHHHhccce-e-cc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence            48999999999888765433 3 11  2266777899999 9999999999999999999999      99999999986


Q ss_pred             -----cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccC
Q 021356          151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD  225 (313)
Q Consensus       151 -----~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~  225 (313)
                           +++++.|.+.|+.     ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||.+.+.   +..
T Consensus        70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~  141 (487)
T PRK05225         70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ  141 (487)
T ss_pred             ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence                 5788889899996     458999999999999999999877788999999999999999999997554   347


Q ss_pred             CCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec--cCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhc
Q 021356          226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSD  301 (313)
Q Consensus       226 l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~--~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d  301 (313)
                      +|+|++||.++|++||+.+|++|.+|     +|.|++|+++  +|+++.+.|++++|+.++|+.+  +++|||++||+||
T Consensus       142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD  216 (487)
T PRK05225        142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD  216 (487)
T ss_pred             CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence            89999999999999999999999998     8999999999  8999999999999999999996  8999999999999


Q ss_pred             ccchhhhcccC
Q 021356          302 IFGEREGSLKM  312 (313)
Q Consensus       302 ~~ge~~~l~g~  312 (313)
                      |||||+||||+
T Consensus       217 L~GEq~vLcG~  227 (487)
T PRK05225        217 LMGEQTILCGM  227 (487)
T ss_pred             chhhHHHHHhH
Confidence            99999999996

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.4e-40  Score=313.52  Aligned_cols=187  Identities=40%  Similarity=0.656  Sum_probs=177.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .-|+| |||+|||+|++|.++|+|||++      |.+|++|+|+++.++++|.+.|+.     +.+.+|++++||+|+++
T Consensus        14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L   81 (338)
T COG0059          14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL   81 (338)
T ss_pred             hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence            57899 9999999999999999999999      999999999999999999999998     56999999999999999


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      +||..+.++++ +|.|.|++|+.|..+||+.+.+-.   ..+|++++||.+.|++||+.+|++|.+|     +|.+++|+
T Consensus        82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA  153 (338)
T COG0059          82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA  153 (338)
T ss_pred             CchhhHHHHHHHHhhhhhcCCceEEeccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence            99999999998 899999999999999999985443   4778999999999999999999999998     79999999


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhcccC
Q 021356          265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLKM  312 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g~  312 (313)
                      ++||.++++.+.+++|+.++|+.|  +.+|||++|+++||||||+||||.
T Consensus       154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGg  203 (338)
T COG0059         154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGG  203 (338)
T ss_pred             EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhH
Confidence            999999999999999999999987  799999999999999999999984

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=100.00  E-value=8.8e-39  Score=306.24  Aligned_cols=188  Identities=37%  Similarity=0.588  Sum_probs=171.7

Q ss_pred             cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021356          104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ....|+| ++|||||+|+||.++|++|+++      |++|++++++ .++.+.+.+.|+.     ..+++|++++||+|+
T Consensus        10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~   76 (335)
T PRK13403         10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ   76 (335)
T ss_pred             ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence            3488999 9999999999999999999999      9999888876 4566677778886     348999999999999


Q ss_pred             EcccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEE
Q 021356          184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS  262 (313)
Q Consensus       184 LavP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i  262 (313)
                      +++|+..+.++++ +++++||+|++|+.+|||.+.+-+   ..+|++++||.+.|++||+.+|++|.+|     .|.+++
T Consensus        77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l  148 (335)
T PRK13403         77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL  148 (335)
T ss_pred             EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence            9999988878886 799999999999999999985543   4778999999999999999999999998     799999


Q ss_pred             EEeccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhcccC
Q 021356          263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLKM  312 (313)
Q Consensus       263 itp~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g~  312 (313)
                      |+++||.++++.+++++++.++|+.|  +++|||++|+++||||||+||||.
T Consensus       149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg  200 (335)
T PRK13403        149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGG  200 (335)
T ss_pred             EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHH
Confidence            99999999999999999999999997  899999999999999999999994

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=100.00  E-value=7.2e-36  Score=287.66  Aligned_cols=188  Identities=38%  Similarity=0.610  Sum_probs=174.1

Q ss_pred             cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021356          104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ....|+| ++|||||+|+||.++|++|+++      |++|++++++++++.+.+.+.|+..     .+.++++++||+|+
T Consensus        11 ~~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVv   78 (330)
T PRK05479         11 DLSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIM   78 (330)
T ss_pred             ChhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEE
Confidence            3478899 9999999999999999999999      9999888888777788888888863     48899999999999


Q ss_pred             EcccchhHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEE
Q 021356          184 LLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS  262 (313)
Q Consensus       184 LavP~~a~~~vi-~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i  262 (313)
                      |++||+.+.+++ ++++++|++|++|+++||+.+.+.+.   .+|+++++|++|||+|++.+|+.|+.|     +|++++
T Consensus        79 LaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l  150 (330)
T PRK05479         79 ILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCL  150 (330)
T ss_pred             EcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEE
Confidence            999999998898 68999999999999999999877764   678899999999999999999999988     899999


Q ss_pred             EEeccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhccc
Q 021356          263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLK  311 (313)
Q Consensus       263 itp~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g  311 (313)
                      +++++|+++++.+.+++|+.++|+.+  +++|||++|+++||||||+||||
T Consensus       151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~g  201 (330)
T PRK05479        151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCG  201 (330)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhh
Confidence            99999999999999999999999986  79999999999999999999998

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=100.00  E-value=1.1e-32  Score=264.19  Aligned_cols=185  Identities=40%  Similarity=0.626  Sum_probs=166.3

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+| ++|+|||+|+||.++|++|+++      |++++++.++++++.+.+.+.|+.     ..++.+++++||+|+|++|
T Consensus         1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp   68 (314)
T TIGR00465         1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP   68 (314)
T ss_pred             CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence            578 9999999999999999999999      998888888766666777778886     3468889999999999999


Q ss_pred             chhHHH-HHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       188 ~~a~~~-vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      |+.+.. +.+++.+.++++.+|..+||+++.+++.   .+|+++++|++|||+|++.+|++|.+|     +|++++++++
T Consensus        69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~  140 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE  140 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence            995555 5568999999999999999999988865   678889999999999999899999998     7999988899


Q ss_pred             cCCCHHHHHHHHHHHHHcCCC--ceeecChhHHHhhcccchhhhcccC
Q 021356          267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGEREGSLKM  312 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~--~~~~tT~~~e~~~d~~ge~~~l~g~  312 (313)
                      +|+++++.+.+++|+.++|..  .+++|++++|+..|+|+||++|||-
T Consensus       141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs  188 (314)
T TIGR00465       141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGG  188 (314)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhH
Confidence            999999999999999999998  5899999999999999999999983

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.98  E-value=4.2e-32  Score=237.33  Aligned_cols=161  Identities=44%  Similarity=0.721  Sum_probs=135.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+| |+|+|||+|++|.++|+|||++      |++|+++.+++++++++|++.||.     ..+.+|++++||+|++++|
T Consensus         2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P   69 (165)
T PF07991_consen    2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP   69 (165)
T ss_dssp             HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred             cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence            678 9999999999999999999999      999999999999899999999998     4699999999999999999


Q ss_pred             chhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       188 ~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      |..+.++++ ++.++||+|++|..+||+.+.+-.   ..+|++++++.++|++|++.+|++|.+|     .|.+++|+++
T Consensus        70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~~---i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~  141 (165)
T PF07991_consen   70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYGL---IKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH  141 (165)
T ss_dssp             HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCTT---S---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcCc---ccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence            999999995 899999999999999999984432   4678899999999999999999999998     7999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCc
Q 021356          267 QDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~~  288 (313)
                      ||.++++.+++++|+.++|+.|
T Consensus       142 qD~sg~A~~~ala~A~~iG~~r  163 (165)
T PF07991_consen  142 QDASGKAKELALAYAKAIGGTR  163 (165)
T ss_dssp             E-SSS-HHHHHHHHHHHTTHHH
T ss_pred             ECCCchHHHHHHHHHHHhCCcC
Confidence            9999999999999999999754

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.2e-21  Score=183.62  Aligned_cols=170  Identities=16%  Similarity=0.243  Sum_probs=141.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~~ADvIiLavP~~  189 (313)
                      ++|+|||+|+||+++|+.|++.      |+.+ +++.+.+....+.+.+.|++++  ...+. .+.+.++|+||++||..
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~   75 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE   75 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence            7999999999999999999999      9976 5666666677788888998863  11233 67888999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh-HHHHHHhcccccCCCceEEEEeccC
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~-~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      ...++++++.+++|+|++|+|+++++...++......+++.+||+.|| +.|++ ...+|+        +..+++||.+.
T Consensus        76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf~--------~~~~vltp~~~  146 (279)
T COG0287          76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLFE--------NAVVVLTPSEG  146 (279)
T ss_pred             HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCcccccccC--------CCEEEEcCCCC
Confidence            999999999999999999999999975444332335566569999999 56763 445555        57999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021356          269 VDGRATNVALGWSVALGSPFTFATTLEQEYK  299 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~  299 (313)
                      .+.+.++.++++|.++| .++..+|+++|=+
T Consensus       147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD~  176 (279)
T COG0287         147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHDR  176 (279)
T ss_pred             CCHHHHHHHHHHHHHcC-CEEEEcChHHHhH
Confidence            98999999999999999 8899999999943

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.83  E-value=1.2e-19  Score=170.73  Aligned_cols=149  Identities=20%  Similarity=0.297  Sum_probs=122.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|||+|+||.+++++|.+.      |+    ++++. +++.+..+.+. +.|+..    ..+..|++++||+|||++
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICS-DLNVSNLKNASDKYGITI----TTNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEE-CCCHHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence            6899999999999999999987      64    45444 44444444444 467642    457778899999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      ||+...++++++.+.++++++|+ .++|+.+..++.   .++...+++|+|||+|...       |     .|++. +++
T Consensus        72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v-------g-----~g~t~-~~~  135 (272)
T PRK12491         72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV-------G-----EGMSA-LCF  135 (272)
T ss_pred             ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH-------c-----CceEE-EEe
Confidence            99999999999999999998877 788999988886   5555668999999999887       4     67877 678


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCC
Q 021356          266 HQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .++++.+..+.++.||+.+|..
T Consensus       136 ~~~~~~~~~~~v~~lf~~~G~~  157 (272)
T PRK12491        136 NEMVTEKDIKEVLNIFNIFGQT  157 (272)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCE
Confidence            8889999999999999999954

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.83  E-value=1.3e-19  Score=170.14  Aligned_cols=171  Identities=16%  Similarity=0.155  Sum_probs=128.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |+|+|||+|+||+++|+.|++.      |++|.+. +++++..+.+.+.|.++.   ..+..+.+++||+||+++|+...
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~-d~~~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~   70 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGV-SRRESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL   70 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHC------CCEEEEE-ECCHHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence            5899999999999999999999      9886544 455566677777886531   22333578999999999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCH
Q 021356          192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG  271 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~  271 (313)
                      .++++++.+.++++.+|+|+++++...++.....   ...||+.||. ++++. ..+..+....+.|.++++||.++.++
T Consensus        71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HPm-~G~~~-~g~~~a~~~lf~g~~~~l~p~~~~~~  145 (279)
T PRK07417         71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHPM-AGTAE-SGVEAGQRGLFKNRPWVLTPTENTDL  145 (279)
T ss_pred             HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCCc-CCCCc-chHHHhhHHHhCCCcEEEccCCCCCH
Confidence            9999999999999999999999986544431111   2359999993 23221 11112222222367999999999999


Q ss_pred             HHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          272 RATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       272 ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      ++++.++.+++.+| .+++.+++++|=
T Consensus       146 ~~~~~v~~l~~~lG-~~~v~~~~~~hD  171 (279)
T PRK07417        146 NALAIVEELAVSLG-SKIYTADPEEHD  171 (279)
T ss_pred             HHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence            99999999999999 567788888873

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.82  E-value=2.7e-19  Score=173.91  Aligned_cols=175  Identities=14%  Similarity=0.077  Sum_probs=129.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|+|||+|+||+++|++|++.      |+++.+..+. +......+...|+.+  ....++++++++||+||+++|+..
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~   72 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA   72 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence            4799999999999999999999      8876555443 222223344445553  223467888999999999999999


Q ss_pred             HHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCC
Q 021356          191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV  269 (313)
Q Consensus       191 ~~~vi~ei~~-~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~  269 (313)
                      ..++++++.+ .++++++|+|+++++...++.....++...+||+.|| +++.+. ..+..+....+.|..+++||.++.
T Consensus        73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~  150 (359)
T PRK06545         73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT  150 (359)
T ss_pred             HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence            8889999987 4899999999999975433221123455678999999 666542 122222222334678999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          270 DGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       270 ~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      +++.++.+++|++.+| .+++.++.++|
T Consensus       151 ~~~~~~~v~~l~~~lG-a~~v~~~~~~H  177 (359)
T PRK06545        151 DPDAVAELKDLLSGTG-AKFVVLDAEEH  177 (359)
T ss_pred             CHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence            9999999999999999 56667788887

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.81  E-value=4.4e-19  Score=166.84  Aligned_cols=153  Identities=20%  Similarity=0.276  Sum_probs=129.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +++|||||.|+||.+++.+|.+.      |    .+|++.++..++....+.++|...    ..+..+++.++|+|+|++
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav   70 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV   70 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence            37999999999999999999999      7    367777766544445777787762    457789999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      +|+...+++.++.+ ..++++|+ .++|+.+..++.   .++ +.+++|+|||+|...       |     +|++. +++
T Consensus        71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v-------g-----~g~t~-i~~  132 (266)
T COG0345          71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV-------G-----AGVTA-ISA  132 (266)
T ss_pred             ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH-------c-----Cccee-eec
Confidence            99999999999988 66777665 999999999886   666 899999999999988       4     68888 888


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCceeecC
Q 021356          266 HQDVDGRATNVALGWSVALGSPFTFATT  293 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT  293 (313)
                      ..+++++..+.+.+|++.+|  ++++.+
T Consensus       133 ~~~~~~~~~~~v~~l~~~~G--~v~~v~  158 (266)
T COG0345         133 NANVSEEDKAFVEALLSAVG--KVVEVE  158 (266)
T ss_pred             CccCCHHHHHHHHHHHHhcC--CeEEec
Confidence            88999999999999999999  555555

>PLN02256 arogenate dehydrogenase

Probab=99.81  E-value=6.9e-19  Score=168.27  Aligned_cols=169  Identities=15%  Similarity=0.077  Sum_probs=128.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS  187 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP  187 (313)
                      ++ ++|+|||+|+||+++|+.|++.      |++|++..++.  ..+.+.+.|+..    ..+.++++ .++|+|++|+|
T Consensus        35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp  101 (304)
T PLN02256         35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS  101 (304)
T ss_pred             CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence            55 8999999999999999999998      88876555443  235666778753    45777776 47999999999


Q ss_pred             chhHHHHHHHH-HhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          188 DAAQADNYEKI-FSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       188 ~~a~~~vi~ei-~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      +....++++++ .++++++++|+|+++++...++.....++.+.+||++||+.....-...        .++.++++++.
T Consensus       102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~~~~  173 (304)
T PLN02256        102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGG--------WAGLPFVYDKV  173 (304)
T ss_pred             HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccc--------cCCCeEEEecc
Confidence            99999999988 6889999999999987532222111255667889999996633321112        23567777764


Q ss_pred             ----cCCCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021356          267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYK  299 (313)
Q Consensus       267 ----~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~  299 (313)
                          .+.++++++.++++|+.+| .+++++|+++|-+
T Consensus       174 ~i~~~~~~~~~~~~l~~l~~~lG-a~v~~~~~eeHD~  209 (304)
T PLN02256        174 RIGDEGEREARCERFLDIFEEEG-CRMVEMSCEEHDR  209 (304)
T ss_pred             eecCCCCCHHHHHHHHHHHHHCC-CEEEEeCHHHHhH
Confidence                5667889999999999999 8899999999964

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.80  E-value=1.6e-18  Score=162.03  Aligned_cols=164  Identities=18%  Similarity=0.204  Sum_probs=125.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      |+|+|||+|+||+++|++|++.      |+  +| +++++++...+.+.+.|+.+.   ..+..++. ++|+||+++|+.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v-~~~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~   69 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEK------GLISKV-YGYDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD   69 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhc------CCCCEE-EEEcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence            5899999999999999999988      75  44 455555556667777887531   34666755 599999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CchhHHHHHHhcccccCCCceEEE
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ...+++.++.+ ++++++|+|+++++....+.....  ....||+.||+.      |.....++|+        |..+++
T Consensus        70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il  138 (275)
T PRK08507         70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL  138 (275)
T ss_pred             HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence            99999999999 999999999888764333211011  125799999973      4444445665        578889


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      |+.++.+++.++.++.+++.+| .+++.+++++|=
T Consensus       139 ~~~~~~~~~~~~~v~~l~~~~G-~~~~~~~~~~hD  172 (275)
T PRK08507        139 CDVEKSGEKHQERAKEIFSGLG-MRIVYMDAKEHD  172 (275)
T ss_pred             ecCCCCCHHHHHHHHHHHHHhC-CEEEEeCHHHHH
Confidence            9988888999999999999999 678888888873

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.79  E-value=1e-18  Score=171.29  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=118.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|+|||+ |+||+++|+.|++.     .+++| ++.++..        .+       ..+.++.+++||+||||+|+..
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V-~g~D~~d--------~~-------~~~~~~~v~~aDlVilavPv~~   63 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEV-IGHDPAD--------PG-------SLDPATLLQRADVLIFSAPIRH   63 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-----CCCEE-EEEcCCc--------cc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence            79999999 99999999999974     06665 4555420        11       2367788999999999999999


Q ss_pred             HHHHHHHHHhc---CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       191 ~~~vi~ei~~~---mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      ..++++++.++   +++|++|+|+++++...++.   ..+...+||+.|| +.|++..++|        +|.++++||..
T Consensus        64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~lf--------~g~~~iltp~~  131 (370)
T PRK08818         64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPTL--------KGRVMVVCEAR  131 (370)
T ss_pred             HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCccc--------CCCeEEEeCCC
Confidence            99999998875   89999999999998544433   1233467999999 6666533344        46899999875


Q ss_pred             CCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          268 DVDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       268 d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      +  .+.++.+++|++.+| .+++.+|+++|=
T Consensus       132 ~--~~~~~~v~~l~~~~G-a~v~~~~aeeHD  159 (370)
T PRK08818        132 L--QHWSPWVQSLCSALQ-AECVYATPEHHD  159 (370)
T ss_pred             c--hhHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence            4  456788999999999 689999999993

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.78  E-value=8.4e-18  Score=157.66  Aligned_cols=158  Identities=13%  Similarity=0.163  Sum_probs=123.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      |+|+|||+|+||.+++++|.+.      |    .++++.+|..++.. ..+.+.|+..    ..++.+++++||+|||++
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM   73 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence            8999999999999999999987      6    46666665443322 3334457642    457788899999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~-~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      ||+...++++++.+.++++++|+++ +|+.+..+++   .++.+.++++.|||.|...       +     .|.+ ++++
T Consensus        74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~-------~-----~~~t-~~~~  137 (279)
T PRK07679         74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI-------L-----KSAT-AISP  137 (279)
T ss_pred             CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH-------h-----cccE-EEee
Confidence            9999999999999889999998875 9998877765   4455678999999987766       2     3566 4778


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      .++.+++..+.++.||+.+|.  .+..+ |+++
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~--~~~v~-e~~~  167 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGL--VSVVE-EEDM  167 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCc--EEEeC-HHHh
Confidence            888889999999999999995  44444 4444

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.77  E-value=9.8e-18  Score=159.05  Aligned_cols=169  Identities=18%  Similarity=0.242  Sum_probs=130.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|+|||+|+||.++|+.|++.      |+  +|++. +++++..+.+.+.|..+  ....+.+++++++|+||+++|+.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~-dr~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~   77 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGA-DRSAETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG   77 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEE-ECCHHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence            8999999999999999999988      75  55544 44455566777777642  12346778899999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CchhHHHHHHhcccccCCCceEEE
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ...++++++.+.++++.+|+|+++++...++.....+++++.|+..||..      |+....++|.        |.++++
T Consensus        78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~--------g~~~~l  149 (307)
T PRK07502         78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFE--------NRWCIL  149 (307)
T ss_pred             HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHC--------CCeEEE
Confidence            88889999999999999999999987433332112345677899999953      2222334554        578999


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      ++....++++++.++.+++.+| .+++.+++++|=
T Consensus       150 ~~~~~~~~~~~~~~~~l~~~lG-~~~~~~~~~~hD  183 (307)
T PRK07502        150 TPPEGTDPAAVARLTAFWRALG-ARVEEMDPEHHD  183 (307)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHHh
Confidence            9988888999999999999999 467788888873

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.77  E-value=2.6e-18  Score=160.12  Aligned_cols=162  Identities=20%  Similarity=0.212  Sum_probs=118.0

Q ss_pred             HHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCC
Q 021356          126 QAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKP  204 (313)
Q Consensus       126 lA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~  204 (313)
                      +|+.|++.      |. ..+++.++++...+.|++.|+.++   ..+..+.++++|+||||+|+....++++++.+++++
T Consensus         1 ~A~aL~~~------g~~~~v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~   71 (258)
T PF02153_consen    1 IALALRKA------GPDVEVYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP   71 (258)
T ss_dssp             HHHHHHHT------TTTSEEEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T
T ss_pred             ChHHHHhC------CCCeEEEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC
Confidence            57888888      73 235788888888899999999853   223367899999999999999999999999999999


Q ss_pred             CcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc
Q 021356          205 NSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL  284 (313)
Q Consensus       205 gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al  284 (313)
                      |++|+|++|++...++.....++.+.+||++|| +.|++ +..|.......+.|.++++||..+.+.++++.+++||+.+
T Consensus        72 ~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~  149 (258)
T PF02153_consen   72 GAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL  149 (258)
T ss_dssp             TSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred             CcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence            999999999974333221224567899999999 66664 2233333444455789999999998899999999999999


Q ss_pred             CCCceeecChhHHHh
Q 021356          285 GSPFTFATTLEQEYK  299 (313)
Q Consensus       285 G~~~~~~tT~~~e~~  299 (313)
                      |+ +++.+|+++|=+
T Consensus       150 Ga-~~~~~~~eeHD~  163 (258)
T PF02153_consen  150 GA-RVVEMDAEEHDR  163 (258)
T ss_dssp             T--EEEE--HHHHHH
T ss_pred             CC-EEEEcCHHHHHH
Confidence            95 788999999943

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.77  E-value=2.1e-17  Score=152.97  Aligned_cols=153  Identities=17%  Similarity=0.214  Sum_probs=120.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+|+|||+|+||.+++++|.+.      |+    ++++.++++.+..+.+.+.|+..    ..+..++++++|+||+++|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~   70 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK   70 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence            6899999999999999999998      86    66666355455555666678753    4577888999999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      |+...++++++.+.++++++|+ +++|+++..++.   .++.. ++++.|||.|...       |     .+. ..++..
T Consensus        71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~-------~-----~~~-~~l~~~  133 (266)
T PLN02688         71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV-------G-----EAA-SVMSLG  133 (266)
T ss_pred             cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH-------h-----Cce-EEEEeC
Confidence            9998899999988889998765 678888766664   33333 7999999998876       2     234 447777


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCceeecC
Q 021356          267 QDVDGRATNVALGWSVALGSPFTFATT  293 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~~~~~tT  293 (313)
                      ...+++..+.++.+++.+|.  ++..+
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~--~~~~~  158 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK--IWVVD  158 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC--EEEeC
Confidence            78889999999999999995  65554

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.75  E-value=2.7e-17  Score=164.29  Aligned_cols=163  Identities=17%  Similarity=0.190  Sum_probs=130.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |+|+||| +|.||+++|+.|++.      |++|++..+..+...+.+.+.|+..    ..+..++++++|+|++++|+..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~   70 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV   70 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence            6899997 899999999999999      9887766655433345666677642    3477888999999999999998


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      ..++++++.+.++++++|+|+++++.   ..+..   .++.+..||+.||. .|+.. .+|        .|..++++|.+
T Consensus        71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPm-aGp~~-~~~--------~g~~~il~p~~  137 (437)
T PRK08655         71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPM-FGPRT-PSL--------KGQVVILTPTE  137 (437)
T ss_pred             HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCC-CCCCC-ccc--------CCCEEEEecCC
Confidence            88899999999999999999998753   33333   45667899999993 34331 123        35688899998


Q ss_pred             CCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          268 DVDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       268 d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      +.++++.+.+.++|+.+| .+++.+++++|-
T Consensus       138 ~~~~~~~~~v~~ll~~~G-~~v~~~~~e~HD  167 (437)
T PRK08655        138 KRSNPWFDKVKNFLEKEG-ARVIVTSPEEHD  167 (437)
T ss_pred             CCCHHHHHHHHHHHHHcC-CEEEECCHHHHH
Confidence            888999999999999999 567889999984

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.74  E-value=4.4e-17  Score=153.20  Aligned_cols=152  Identities=16%  Similarity=0.175  Sum_probs=118.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |++|+|||+|+||.+++++|.+.      |    .++++..++.+...+. ..+.+...   ...+..++++++|+||++
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~---~~~~~~e~~~~aDvVila   71 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVE---LADNEAEIFTKCDHSFIC   71 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeE---EeCCHHHHHhhCCEEEEe
Confidence            57899999999999999999987      6    4666666544332222 22232111   134777889999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      +|++...++++++.++++++++|+ .+.|+.+..++.   .+|. .++||+|||+|...       |     +|++. ++
T Consensus        72 vpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~-------g-----~g~t~-~~  134 (277)
T PRK06928         72 VPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV-------G-----VGTSL-VA  134 (277)
T ss_pred             cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH-------h-----hhcEE-Ee
Confidence            999999999999999898887654 788999888876   4453 58999999999887       4     57776 77


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCCc
Q 021356          265 VHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                      +..+++++..+.++.++..+|...
T Consensus       135 ~~~~~~~~~~~~v~~l~~~~G~~~  158 (277)
T PRK06928        135 HAETVNEANKSRLEETLSHFSHVM  158 (277)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCEE
Confidence            888899999999999999999443

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.71  E-value=2.2e-16  Score=147.06  Aligned_cols=144  Identities=19%  Similarity=0.267  Sum_probs=113.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||+|+||++++++|.+.      +.    ++++ .+++.+.      .++..    ..++.++++++|+|||++|
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~-~~~~~~~------~~~~~----~~~~~~~~~~~D~Vilavk   66 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYY-HTPSKKN------TPFVY----LQSNEELAKTCDIIVLAVK   66 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhC------CCCCcceEEE-ECCChhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence            7899999999999999999987      52    3444 4433221      23331    3477788899999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      |+...++++++.++++++.+|++++|+++..++.   .++....+++.|||.|...       |     .| .+.+++.+
T Consensus        67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~-------g-----~g-~t~i~~~~  130 (260)
T PTZ00431         67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV-------G-----QG-SLVFCANN  130 (260)
T ss_pred             HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh-------c-----ce-eEEEEeCC
Confidence            9999999999999888777788999999877775   4555557899999998544       2     33 45588988


Q ss_pred             CCCHHHHHHHHHHHHHcCCCc
Q 021356          268 DVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       268 d~~~ea~e~a~~L~~alG~~~  288 (313)
                      +++.+..+.++.+|+.+|...
T Consensus       131 ~~~~~~~~~v~~l~~~~G~~~  151 (260)
T PTZ00431        131 NVDSTDKKKVIDIFSACGIIQ  151 (260)
T ss_pred             CCCHHHHHHHHHHHHhCCcEE
Confidence            899999999999999999443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.71  E-value=2.5e-16  Score=145.85  Aligned_cols=148  Identities=18%  Similarity=0.252  Sum_probs=114.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC---cEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +++|+|||+|+||.++++.|.+.      |   .+|.+..|+ .+..+...+ .|+..    ..+.+++++++|+|++++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~-~~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v   70 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPS-PEKRAALAEEYGVRA----ATDNQEAAQEADVVVLAV   70 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCC-HHHHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence            48999999999999999999988      7   456555554 333444433 36542    357778889999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      |+....++++++.+++ +..+|.+++|+....++.   .++.+.++++.|||.|...       +     .|. ..+++.
T Consensus        71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~-------~-----~~~-~~i~~~  133 (267)
T PRK11880         71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV-------G-----AGM-TALTAN  133 (267)
T ss_pred             CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH-------c-----Cce-EEEecC
Confidence            9999999999988877 334556889998776664   4555678999999987543       2     234 457888


Q ss_pred             cCCCHHHHHHHHHHHHHcCC
Q 021356          267 QDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~  286 (313)
                      ++.++++.+.++.|++.+|.
T Consensus       134 ~~~~~~~~~~v~~l~~~lG~  153 (267)
T PRK11880        134 ALVSAEDRELVENLLSAFGK  153 (267)
T ss_pred             CCCCHHHHHHHHHHHHhCCe
Confidence            88999999999999999995

>PLN02712 arogenate dehydrogenase

Probab=99.70  E-value=3.1e-16  Score=163.97  Aligned_cols=173  Identities=13%  Similarity=0.073  Sum_probs=123.4

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIi  183 (313)
                      ..++.+ ++|||||+|+||+++|++|++.      |++|++..+. ... +.+.+.|+..    ..+.++++. ++|+||
T Consensus       364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~-~~~-~~a~~~Gv~~----~~~~~el~~~~aDvVI  430 (667)
T PLN02712        364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRS-DYS-DEAQKLGVSY----FSDADDLCEEHPEVIL  430 (667)
T ss_pred             cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECC-hHH-HHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence            456788 9999999999999999999998      9887755554 332 4566778753    457788775 599999


Q ss_pred             EcccchhHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021356          184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~-~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      +|+|+....++++++.. .+++|++|+|+++++   +..+..   .++.+.+||+.||+.....-+..|.+ ......+.
T Consensus       431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~  506 (667)
T PLN02712        431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV  506 (667)
T ss_pred             ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc
Confidence            99999998899998775 799999999998874   233333   55677899999996543321111221 11111221


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       260 ~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                         +...+....+.++.++++|..+| .+++++|+++|-
T Consensus       507 ---~v~~~~~~~~~~~~l~~l~~~lG-a~vv~ms~eeHD  541 (667)
T PLN02712        507 ---RIGSDDRRVSRCDSFLDIFAREG-CRMVEMSCAEHD  541 (667)
T ss_pred             ---EeCCCcchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence               12222334456677789999999 688899999995

>PLN02712 arogenate dehydrogenase

Probab=99.68  E-value=9.2e-16  Score=160.44  Aligned_cols=166  Identities=17%  Similarity=0.139  Sum_probs=122.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a  190 (313)
                      ++|||||+|+||+++|++|++.      |++|++..+.  ...+.+.+.|+..    ..+.++++ +++|+|+||+|+..
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~--~~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~  120 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRS--DHSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS  120 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC--HHHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence            8999999999999999999999      9887655554  2235677788763    45777755 57999999999998


Q ss_pred             HHHHHHHHH-hcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHH-HHHHhcccccCCCceEEEEe---
Q 021356          191 QADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR-RLYVQGKEINGAGINSSFAV---  265 (313)
Q Consensus       191 ~~~vi~ei~-~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r-~lf~~G~e~~g~G~~~iitp---  265 (313)
                      ..++++++. +++++|++|+|+++++....+.....++++.+||+.||+. |++.. ..+.        |..++|++   
T Consensus       121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMa-G~e~~~~g~~--------~~~~~~~~~~~  191 (667)
T PLN02712        121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMF-GPQSAKHGWD--------GLRFVYEKVRI  191 (667)
T ss_pred             HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcC-CCccccchhc--------cCcEEEeeccC
Confidence            889999875 7899999999999987422221112556778999999943 55421 1222        34566663   


Q ss_pred             -ccCCCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021356          266 -HQDVDGRATNVALGWSVALGSPFTFATTLEQEYK  299 (313)
Q Consensus       266 -~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~  299 (313)
                       ++....+.++.++++|+.+| .+++++|+++|-+
T Consensus       192 ~~~~~~~~~~~~l~~l~~~lG-a~v~~ms~eeHD~  225 (667)
T PLN02712        192 GNEELRVSRCKSFLEVFEREG-CKMVEMSCTEHDK  225 (667)
T ss_pred             CCccccHHHHHHHHHHHHHcC-CEEEEeCHHHHHH
Confidence             33333456777889999999 6899999999853

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.67  E-value=1.9e-15  Score=137.91  Aligned_cols=151  Identities=16%  Similarity=0.205  Sum_probs=115.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc---E-EEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~---~-Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|||.|+||.++++++.+.      +.   + +++..|++.+.. +.+.+.++..    ..+.+++++++|+|++++
T Consensus         5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence            7899999999999999999876      52   3 444555443333 3334456542    457888999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      |++.+.++++++.++++ +++| ..++|+.+..++.   .++.+..++++|||.+...       |     .|.+. ++.
T Consensus        75 p~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v-------~-----~g~~~-~~~  137 (245)
T PRK07634         75 PPSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI-------G-----KSISL-YTM  137 (245)
T ss_pred             CHHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH-------h-----cCCeE-Eee
Confidence            99999999999888776 4554 4788999888876   5566668999999987654       3     46777 455


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCce
Q 021356          266 HQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      ..+.+++..+.++++++.+|....
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~  161 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQL  161 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEE
Confidence            567889999999999999996553

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.66  E-value=1.6e-15  Score=148.68  Aligned_cols=149  Identities=14%  Similarity=0.113  Sum_probs=111.7

Q ss_pred             CCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       110 GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      .+++|+||| +|+||+++|+.|++.      |++|.+..+..           .       .+.++++++||+||+|+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~-----------~-------~~~~~~~~~aDlVilavP~  152 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD-----------W-------DRAEDILADAGMVIVSVPI  152 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc-----------c-------hhHHHHHhcCCEEEEeCcH
Confidence            448999999 999999999999999      99876665431           0       1456788999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      ....++++++.+ +++|++|+|+++++...........+  ..||+.||. .|+.. ..|        .|..+++++  .
T Consensus       153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm-~G~~~-~~~--------~~~~vv~~~--~  217 (374)
T PRK11199        153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPM-FGPDV-GSL--------AKQVVVVCD--G  217 (374)
T ss_pred             HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCC-CCCCC-ccc--------CCCEEEEcC--C
Confidence            999999999888 99999999999985422221111222  269999993 33331 112        234454443  4


Q ss_pred             CCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          269 VDGRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      .++++++.++.+++.+| .+++.+|+++|=
T Consensus       218 ~~~~~~~~~~~l~~~lG-~~v~~~~~~~HD  246 (374)
T PRK11199        218 RQPEAYQWLLEQIQVWG-ARLHRISAVEHD  246 (374)
T ss_pred             CCchHHHHHHHHHHHCC-CEEEECCHHHHH
Confidence            55788999999999999 688999999984

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.64  E-value=7.1e-15  Score=154.42  Aligned_cols=164  Identities=18%  Similarity=0.226  Sum_probs=126.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|+|||+|+||.++++.+++.      |+  +|++ ++++++..+.+.+.|+..  ....+.+++++++|+|++++|++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~-~d~~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~   74 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRER------GLAREVVA-VDRRAKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL   74 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEE-EECChhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence            7899999999999999999998      84  5544 455455566777788752  12346788899999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCC-CccEEEeccCCCchh-------HHHHHHhcccccCCC
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPK-NIGVIAVCPKGMGPS-------VRRLYVQGKEINGAG  258 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~-~i~vV~vhPn~pg~~-------~r~lf~~G~e~~g~G  258 (313)
                      ...++++++.++++++.+|+|++|++   +..++.   .++. .++|+..||.. +.+       ...+|.        +
T Consensus        75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm~-G~~~~g~~~a~~~l~~--------~  142 (735)
T PRK14806         75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPIA-GSEKSGVHAANADLFR--------N  142 (735)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCcC-cCCcchhhhhhhHHhC--------C
Confidence            88889999999999999999999987   444443   3332 45677778832 222       234554        4


Q ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      .++++++..+.+++..+.+++|++.+| .+++.++.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~~~~~~~~~h  180 (735)
T PRK14806        143 HKVILTPLAETDPAALARVDRLWRAVG-ADVLHMDVAHH  180 (735)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence            688899999999999999999999999 56777777776

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.63  E-value=2.6e-15  Score=145.05  Aligned_cols=168  Identities=24%  Similarity=0.249  Sum_probs=121.3

Q ss_pred             ccccchhhhhhcCCCccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH
Q 021356           85 SLANRDEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA  159 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-----~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~  159 (313)
                      ++..+++. +|.|.|...     +...++.| ||+||||+|.||+++|+.++.+      ||+|++..++..  .+...+
T Consensus       117 ~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~  186 (324)
T COG1052         117 RIHEGDRR-VREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKE  186 (324)
T ss_pred             chHHHHHH-HhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhh
Confidence            57778888 999999765     34569999 9999999999999999999999      999877776643  222233


Q ss_pred             CCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCc
Q 021356          160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNI  230 (313)
Q Consensus       160 ~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i  230 (313)
                      .++.     ..+++|++++||+|+|+||.+..+. +++ +.++.||+|++|+.++ |-.      +..+++ +.+.....
T Consensus       187 ~~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gagl  260 (324)
T COG1052         187 LGAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGL  260 (324)
T ss_pred             cCce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEe
Confidence            3344     3469999999999999999999876 887 8999999999999654 532      233433 33444578


Q ss_pred             cEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021356          231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV  276 (313)
Q Consensus       231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~  276 (313)
                      +|+--+|........++-.       . -+.+++||. ..+.++++.
T Consensus       261 DV~e~Ep~~~d~~l~~l~~-------~-~~vvltPHia~at~ea~~~  299 (324)
T COG1052         261 DVFENEPALFDHPLLRLDN-------F-PNVVLTPHIASATEEARKA  299 (324)
T ss_pred             eecCCCCCCCChhHhhccC-------C-CCEEEccccccccHHHHHH
Confidence            8888999654333222111       1 358899987 333444433

>PRK07680 late competence protein ComER; Validated

Probab=99.63  E-value=7e-15  Score=137.40  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=109.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHH-HHC-CceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEA-RAA-GFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A-~~~-G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |+|+|||+|+||.+++++|.+.      |.    +|.+..|+ .+..+.. .+. |+..    ..+..++++++|+|||+
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~-~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVila   69 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRT-PAKAYHIKERYPGIHV----AKTIEEVISQSDLIFIC   69 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCC-HHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEe
Confidence            5799999999999999999988      73    45555554 3333332 223 5542    34778889999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      +||+...++++++.++++++++|++ ++|+.+..++.   .++  ..++++|||++...       +     .|... ++
T Consensus        70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~-------~-----~G~t~-~~  131 (273)
T PRK07680         70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA-------L-----SGASL-FT  131 (273)
T ss_pred             cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH-------h-----hccEE-Ee
Confidence            9999999999999999988888775 55687777765   334  36899999877443       1     34554 45


Q ss_pred             eccCCCHHHHHHHHHHHHHcCC
Q 021356          265 VHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~  286 (313)
                      ...+.+.+..+.++.++..+|.
T Consensus       132 ~g~~~~~~~~~~~~~ll~~~G~  153 (273)
T PRK07680        132 FGSRCSEEDQQKLERLFSNIST  153 (273)
T ss_pred             eCCCCCHHHHHHHHHHHHcCCC
Confidence            5666778888999999999994

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.62  E-value=2.9e-15  Score=144.70  Aligned_cols=157  Identities=22%  Similarity=0.245  Sum_probs=117.9

Q ss_pred             ccccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      ++..|++. +|+|+|+.. ..-.+|.| ||+||||+|.||+.+|+.++.+      |++|+.+++..++.  .+...+..
T Consensus       117 ~~~~~~~~-~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~~--~~~~~~~~  186 (324)
T COG0111         117 RIPDADAS-QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPRE--RAGVDGVV  186 (324)
T ss_pred             CchhhHHH-HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCchh--hhccccce
Confidence            57788888 799999862 34469999 9999999999999999999999      99986665533332  23334444


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~  234 (313)
                      .    ..++++++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-.      +..+++ +.+....++|..
T Consensus       187 ~----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~  261 (324)
T COG0111         187 G----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFE  261 (324)
T ss_pred             e----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCC
Confidence            2    4589999999999999999999876 887 8999999999999764 532      233433 333345688888


Q ss_pred             eccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      .+|..+.+.   ++..        -|.++|||-
T Consensus       262 ~EPl~~~~p---L~~~--------pnV~~TPHi  283 (324)
T COG0111         262 EEPLPADSP---LWDL--------PNVILTPHI  283 (324)
T ss_pred             CCCCCCCCh---hhcC--------CCeEECCcc
Confidence            999776633   4442        478889986

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.58  E-value=2.5e-14  Score=132.53  Aligned_cols=143  Identities=16%  Similarity=0.143  Sum_probs=103.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcE---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+|||||+|+||.+++++|++.      |+.   +.+..|..++..+.+.+. |+..    ..+..++++++|+|++++|
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~   70 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR   70 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence            5899999999999999999987      653   334444332222333333 3432    4578888999999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      |+...++++++  .++++++|+ +++|+++..++.   .++.+..+++.|||.|...       +     .|.+. +++.
T Consensus        71 p~~~~~vl~~l--~~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~-------~-----~g~t~-~~~~  132 (258)
T PRK06476         71 PQIAEEVLRAL--RFRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE-------R-----KGVTA-IYPP  132 (258)
T ss_pred             HHHHHHHHHHh--ccCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh-------C-----CCCeE-ecCC
Confidence            98888888876  257787766 678888888875   4455578999999988775       2     35656 4432


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCce
Q 021356          267 QDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                             .+.++.+++.+|....
T Consensus       133 -------~~~~~~l~~~lG~~~~  148 (258)
T PRK06476        133 -------DPFVAALFDALGTAVE  148 (258)
T ss_pred             -------HHHHHHHHHhcCCcEE
Confidence                   1578999999996543

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.57  E-value=1e-14  Score=139.76  Aligned_cols=164  Identities=16%  Similarity=0.133  Sum_probs=114.7

Q ss_pred             cccchhhhhhcCCCcccc-------cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH
Q 021356           86 LANRDEFIVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR  158 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~-------~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~  158 (313)
                      +..+++. +|+|+|....       ...+|.| +++||||+|.||+.+|+.++.+      |++|+++++....     .
T Consensus       115 ~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~  181 (311)
T PRK08410        115 INYYDRY-VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----K  181 (311)
T ss_pred             HHHHHHH-HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----c
Confidence            5556666 8999996321       2368999 9999999999999999999999      9998665543211     1


Q ss_pred             HCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCC
Q 021356          159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKN  229 (313)
Q Consensus       159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~  229 (313)
                      ..++.     ..+++|++++||+|++|+|.+..++ +++ +.+..||||++++.++ |-.      +..+++ +.+. ..
T Consensus       182 ~~~~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-Aa  254 (311)
T PRK08410        182 NEEYE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AG  254 (311)
T ss_pred             ccCce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EE
Confidence            23443     3489999999999999999998876 886 8999999999999654 532      233332 3333 45


Q ss_pred             ccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021356          230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA  277 (313)
Q Consensus       230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a  277 (313)
                      ++|...+|..+.+.   ++..-     .=-|.++|||- ..+.++.+.+
T Consensus       255 LDV~~~EP~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~  295 (311)
T PRK08410        255 LDVLEKEPMEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL  295 (311)
T ss_pred             EecCCCCCCCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence            77777888554443   22210     00379999985 3455555544

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.57  E-value=1.7e-14  Score=138.57  Aligned_cols=168  Identities=18%  Similarity=0.149  Sum_probs=116.0

Q ss_pred             ccccchhhhhhcCCCccc-------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH
Q 021356           85 SLANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA  157 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A  157 (313)
                      ++..+++. +++|+|...       .+..+|.| +++||||+|.||+.+|+.++.+      |++|++..+....    .
T Consensus       116 ~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~----~  183 (314)
T PRK06932        116 SLMGWYRD-QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS----V  183 (314)
T ss_pred             ChHHHHHH-HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc----c
Confidence            35566777 889999531       13468999 9999999999999999999999      9998655432211    0


Q ss_pred             HHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCC
Q 021356          158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPK  228 (313)
Q Consensus       158 ~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~  228 (313)
                      ...+       ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-.      +..+++ +.....
T Consensus       184 ~~~~-------~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gA  255 (314)
T PRK06932        184 CREG-------YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGA  255 (314)
T ss_pred             cccc-------cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEE
Confidence            0111       2389999999999999999999876 886 8999999999999654 532      233332 333334


Q ss_pred             CccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHHHH
Q 021356          229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALG  279 (313)
Q Consensus       229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a~~  279 (313)
                      ..+|+..+|..+.....+.+.+       =-|.++|||-- .+.++.+.+..
T Consensus       256 aLDV~~~EP~~~~~pl~~~~~~-------~pnvilTPHia~~t~e~~~~~~~  300 (314)
T PRK06932        256 ALDVLVKEPPEKDNPLIQAAKR-------LPNLLITPHIAWASDSAVTTLVN  300 (314)
T ss_pred             EEecCCCCCCCCCChhhHhhcC-------CCCEEECCccccCcHHHHHHHHH
Confidence            6788888886555443221111       14889999853 44555555443

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.56  E-value=2.4e-14  Score=138.08  Aligned_cols=164  Identities=17%  Similarity=0.210  Sum_probs=115.2

Q ss_pred             ccccchhhhhhcCCCccc----ccccccCCCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHHHHH
Q 021356           85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA  159 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A~~  159 (313)
                      ++..+++. +++|+|...    +...+|.| +++||||+|.||+.+|+.++ .+      |++|++..+....  +...+
T Consensus       117 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~~--~~~~~  186 (323)
T PRK15409        117 RVVEVAER-VKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHHK--EAEER  186 (323)
T ss_pred             CHHHHHHH-HHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCch--hhHHh
Confidence            35566777 899999632    12468999 99999999999999999998 88      9998755543221  22234


Q ss_pred             CCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCc
Q 021356          160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNI  230 (313)
Q Consensus       160 ~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i  230 (313)
                      .|..     ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-.      +..++. +.......
T Consensus       187 ~~~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaL  260 (323)
T PRK15409        187 FNAR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGL  260 (323)
T ss_pred             cCcE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEe
Confidence            4554     3489999999999999999999876 776 8999999999999664 532      233332 22323457


Q ss_pred             cEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHH
Q 021356          231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN  275 (313)
Q Consensus       231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e  275 (313)
                      +|...+|..+.+.   ++.        --|.++|||- -.+.++.+
T Consensus       261 DVf~~EP~~~~~p---L~~--------~~nvilTPHia~~t~e~~~  295 (323)
T PRK15409        261 DVFEQEPLSVDSP---LLS--------LPNVVAVPHIGSATHETRY  295 (323)
T ss_pred             ecCCCCCCCCCch---hhc--------CCCEEEcCcCCCCcHHHHH
Confidence            7788888543332   333        2589999985 33444443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.56  E-value=5e-15  Score=130.72  Aligned_cols=156  Identities=23%  Similarity=0.241  Sum_probs=107.5

Q ss_pred             cccchhhhhhcCCC--cccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           86 LANRDEFIVRGGRD--LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        86 ~~~~~e~~v~~G~w--~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      +..+++. +++|+|  .......+|.| ++|||||+|.||+.+|+.++.+      |++|++..+... ........++.
T Consensus        11 ~~~~~~~-~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~-~~~~~~~~~~~   81 (178)
T PF02826_consen   11 LPEYHEA-QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPK-PEEGADEFGVE   81 (178)
T ss_dssp             HHHHHHH-HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCH-HHHHHHHTTEE
T ss_pred             HHHHHHH-HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCC-hhhhcccccce
Confidence            5556777 899999  22345689999 9999999999999999999999      999876666543 22234556664


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~  234 (313)
                           ..+++|++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-.      +..+++ +.......+|..
T Consensus        82 -----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~  155 (178)
T PF02826_consen   82 -----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE  155 (178)
T ss_dssp             -----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred             -----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence                 4599999999999999999998875 776 8999999999999765 432      223332 222122456666


Q ss_pred             eccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      .+|..+..   .++.        --|.++|||-
T Consensus       156 ~EP~~~~~---~l~~--------~~nvi~TPH~  177 (178)
T PF02826_consen  156 PEPLPADS---PLWD--------LPNVILTPHI  177 (178)
T ss_dssp             SSSSSTTH---HHHT--------STTEEEESS-
T ss_pred             CCCCCCCC---hHHc--------CCCEEEeCcc
Confidence            77744332   3443        2578899983

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.56  E-value=2e-14  Score=137.70  Aligned_cols=157  Identities=13%  Similarity=0.111  Sum_probs=109.8

Q ss_pred             cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      +..+++. +++|+|... ...+|.| ++|||||+|+||.++|+.++.+      |++|+++++...+       .|+.. 
T Consensus       100 i~~~~~~-~~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~-  162 (303)
T PRK06436        100 ICENNYN-MKNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS-  162 (303)
T ss_pred             hHHHHHH-HHcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc-
Confidence            4445656 899999753 3479999 9999999999999999999999      9998766654211       23321 


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEec
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVC  236 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~vh  236 (313)
                        ...++++++++||+|++++|.+..++ +++ +.++.||||+++++++ |-.+      ..+++ +.......+|...+
T Consensus       163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~E  239 (303)
T PRK06436        163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNE  239 (303)
T ss_pred             --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCC
Confidence              13489999999999999999999876 776 7899999999999765 4321      22222 11212235677777


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEec-c-CCCHHHHHH
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVH-Q-DVDGRATNV  276 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~-~-d~~~ea~e~  276 (313)
                      |..+...              --|+++||| . ..+.+..+.
T Consensus       240 P~~~~~~--------------~~nviiTPHi~g~~t~e~~~~  267 (303)
T PRK06436        240 PIITETN--------------PDNVILSPHVAGGMSGEIMQP  267 (303)
T ss_pred             CCCccCC--------------CCCEEECCccccccCHHHHHH
Confidence            7533321              147999999 3 355654443

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.55  E-value=1e-13  Score=130.08  Aligned_cols=154  Identities=17%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-----------HHHHCCceec--------C-CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------~-~~~~  170 (313)
                      |++|+|||.|.||.++|..+...      |++|++.+++ ++..+           ...+.|..+.        . ....
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~   75 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDIS-DAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT   75 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence            47899999999999999999998      9987765543 33332           2334442110        0 0023


Q ss_pred             CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      +.+ .+++||+||+++|++..  .++++++.++++++++| ++++|+.+..+..   .++...++++.||+.|.+.+   
T Consensus        76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---  148 (282)
T PRK05808         76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---  148 (282)
T ss_pred             CHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence            444 57999999999998776  46899999999999998 5889998877765   33444589999999998873   


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                               .+.  -+++...++++..+.++.+++.+|..-+
T Consensus       149 ---------~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv  179 (282)
T PRK05808        149 ---------KLV--EIIRGLATSDATHEAVEALAKKIGKTPV  179 (282)
T ss_pred             ---------ccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence                     133  2788899999999999999999996544

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.55  E-value=1.3e-13  Score=130.77  Aligned_cols=155  Identities=13%  Similarity=0.164  Sum_probs=113.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET  175 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~~~~~~~e~  175 (313)
                      +++|+|||+|+||.++|..|...      |++|++.++. ++..+.+.+     .|...+.          ....+.+++
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   76 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVM-EGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA   76 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence            58999999999999999999998      9987766544 333333322     1210000          013467788


Q ss_pred             hccCCEEEEcccchh--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021356          176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK  252 (313)
Q Consensus       176 i~~ADvIiLavP~~a--~~~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~  252 (313)
                      +++||+|++++|++.  ..+++.++.+.++++++| ++++|+.+..+.+   .++...+|++.||+.|...       + 
T Consensus        77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~-  145 (311)
T PRK06130         77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I-  145 (311)
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence            999999999999986  345888888888888877 4788887766654   3444568999999998765       2 


Q ss_pred             cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       253 e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                            .-..+++..+++++.++.+..+++.+|..-+
T Consensus       146 ------~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v  176 (311)
T PRK06130        146 ------PLVEVVRGDKTSPQTVATTMALLRSIGKRPV  176 (311)
T ss_pred             ------ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence                  1344678888899999999999999995433

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.54  E-value=5.4e-14  Score=136.04  Aligned_cols=156  Identities=24%  Similarity=0.296  Sum_probs=110.6

Q ss_pred             ccccchhhhhhcCCCccc--------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH
Q 021356           85 SLANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE  156 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~--------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~  156 (313)
                      ++..+++. +++|+|...        ....+|.| ++|||||+|+||+++|+.|+.+      |++|+++++.. +. ..
T Consensus       118 ~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~-~~  187 (333)
T PRK13243        118 RLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTR-KP-EA  187 (333)
T ss_pred             CHHHHHHH-HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCC-Ch-hh
Confidence            35566767 899999632        12368999 9999999999999999999999      99986555442 22 22


Q ss_pred             HHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCC
Q 021356          157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFP  227 (313)
Q Consensus       157 A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~  227 (313)
                      ..+.|+.     ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-.+      ..+++ +.+..
T Consensus       188 ~~~~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~g  261 (333)
T PRK13243        188 EKELGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAG  261 (333)
T ss_pred             HHHcCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEE
Confidence            3344544     3489999999999999999998765 775 8999999999999765 4321      22222 22223


Q ss_pred             CCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       228 ~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      ..++|...+|.. .+   .++..        -|.++|||--
T Consensus       262 AaLDV~~~EP~~-~~---pL~~~--------~nvilTPHia  290 (333)
T PRK13243        262 AGLDVFEEEPYY-NE---ELFSL--------KNVVLAPHIG  290 (333)
T ss_pred             EEeccCCCCCCC-Cc---hhhcC--------CCEEECCcCC
Confidence            346788888853 22   23331        4889999863

>PRK07574 formate dehydrogenase; Provisional

Probab=99.53  E-value=1.5e-13  Score=135.70  Aligned_cols=167  Identities=17%  Similarity=0.110  Sum_probs=117.2

Q ss_pred             ccccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      ++..+++. +++|+|...   ....+|.| ++|||||+|.||..+|+.|+.+      |++|++.++... ..+...+.|
T Consensus       165 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g  235 (385)
T PRK07574        165 NYEPSHRQ-AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELG  235 (385)
T ss_pred             CHHHHHHH-HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcC
Confidence            45556666 889999642   23478999 9999999999999999999999      999876665432 222333456


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~v  232 (313)
                      +..    ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-.+      ..+++ +.+.....+|
T Consensus       236 ~~~----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV  310 (385)
T PRK07574        236 LTY----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDV  310 (385)
T ss_pred             cee----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEec
Confidence            542    3589999999999999999999876 776 7999999999999765 4322      23332 2232345677


Q ss_pred             EEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021356          233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV  276 (313)
Q Consensus       233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~  276 (313)
                      ...+|..+.+.   ++..        -|.++|||- ..+.++.+.
T Consensus       311 ~~~EPlp~d~p---L~~~--------pNvilTPHiag~T~e~~~~  344 (385)
T PRK07574        311 WFPQPAPADHP---WRTM--------PRNGMTPHISGTTLSAQAR  344 (385)
T ss_pred             CCCCCCCCCCh---HHhC--------CCeEECCccccCcHHHHHH
Confidence            77888544433   2221        478899985 344555543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.53  E-value=5.3e-14  Score=135.21  Aligned_cols=162  Identities=21%  Similarity=0.167  Sum_probs=112.8

Q ss_pred             cccchhhhhhcCCCccc-------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH
Q 021356           86 LANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR  158 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~  158 (313)
                      +..+++. +++|+|...       +...+|.| +++||||+|.||+.+|+.++.+      |++|+++.+....      
T Consensus       118 ~~~~~~~-~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~------  183 (317)
T PRK06487        118 LPDYQQA-VAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP------  183 (317)
T ss_pred             HHHHHHH-HHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc------
Confidence            4456666 899999532       12368999 9999999999999999999999      9998665543211      


Q ss_pred             HCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCC
Q 021356          159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKN  229 (313)
Q Consensus       159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~  229 (313)
                       ....     ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-.      +..+++ +......
T Consensus       184 -~~~~-----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAa  256 (317)
T PRK06487        184 -ARPD-----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAA  256 (317)
T ss_pred             -cccc-----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEE
Confidence             1111     2389999999999999999999876 886 8999999999999664 532      233332 3333346


Q ss_pred             ccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021356          230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA  277 (313)
Q Consensus       230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a  277 (313)
                      ++|+..+|..+.+.   ++...      =-|.++|||-- .+.+..+.+
T Consensus       257 LDVf~~EP~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~~  296 (317)
T PRK06487        257 TDVLSVEPPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQRI  296 (317)
T ss_pred             eecCCCCCCCCCCc---hhhcC------CCCEEECCccccCCHHHHHHH
Confidence            78888888554433   22200      14789999853 344544443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.52  E-value=3.2e-13  Score=127.42  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=112.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD  171 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~--------~~~~~~  171 (313)
                      +++|+|||+|.||.++|+.+...      |++|++.+++. ...+.           ..+.|...+        .-...+
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   76 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDP-AALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT   76 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence            58999999999999999999999      99887666543 22221           222221100        001223


Q ss_pred             HHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      ..+.+++||+||+++|....  ..++.++.+.++++++|+ +++|+.+..+.+   .+....+++++||..|...     
T Consensus        77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~-----  148 (295)
T PLN02545         77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI-----  148 (295)
T ss_pred             CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence            34678999999999995554  457888989999999886 899998777665   3344468999999777654     


Q ss_pred             HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                        +       ....+++...++++.++.++.+++.+|...+
T Consensus       149 --~-------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~  180 (295)
T PLN02545        149 --M-------KLVEIIRGADTSDEVFDATKALAERFGKTVV  180 (295)
T ss_pred             --C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence              1       2345788888999999999999999996544

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.50  E-value=2e-13  Score=118.69  Aligned_cols=151  Identities=22%  Similarity=0.237  Sum_probs=99.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |++|||||+|+||..+|++|.+.      |++|.++++. .+..+...+.|...    ..++.|+++++|+|++++|+..
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~   69 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRS-PEKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD   69 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESS-HHHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccc-hhhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence            58999999999999999999999      9998776654 44556666778764    6799999999999999999977


Q ss_pred             HH-HHHHH--HHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       191 ~~-~vi~e--i~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      .. +++.+  +++.+++|++++|++.......++....+ ..++.||..-=.+ ++   ..-+.|       .-. +...
T Consensus        70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G-g~---~~a~~g-------~l~-~~~g  137 (163)
T PF03446_consen   70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG-GP---PGAEEG-------TLT-IMVG  137 (163)
T ss_dssp             HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES-HH---HHHHHT-------TEE-EEEE
T ss_pred             hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec-cc---cccccc-------ceE-EEcc
Confidence            65 58887  99999999999999876432111101121 3456666521111 11   111223       323 3444


Q ss_pred             cCCCHHHHHHHHHHHHHcCC
Q 021356          267 QDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~  286 (313)
                      .+  .++.+.++.+++.+|.
T Consensus       138 G~--~~~~~~~~~~l~~~~~  155 (163)
T PF03446_consen  138 GD--EEAFERVRPLLEAMGK  155 (163)
T ss_dssp             S---HHHHHHHHHHHHHHEE
T ss_pred             CC--HHHHHHHHHHHHHHhC
Confidence            44  6899999999999995

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN03139 formate dehydrogenase; Provisional

Probab=99.50  E-value=3.4e-13  Score=133.10  Aligned_cols=166  Identities=14%  Similarity=0.067  Sum_probs=116.2

Q ss_pred             ccccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      ++..+++. +++|+|...   ....+|.| ++|||||+|.||..+|+.|+.+      |++|+++++.. ...+...+.|
T Consensus       172 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g  242 (386)
T PLN03139        172 NFLPGYHQ-VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETG  242 (386)
T ss_pred             CcHHHHHH-HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcC
Confidence            45566767 889999632   23468999 9999999999999999999999      99986655432 2223334456


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~v  232 (313)
                      +..    ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-.+      ..+++ +.+.....+|
T Consensus       243 ~~~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~l~GAaLDV  317 (386)
T PLN03139        243 AKF----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS-GHIGGYGGDV  317 (386)
T ss_pred             cee----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc-CCceEEEEcC
Confidence            542    3489999999999999999998876 776 8999999999999765 4322      23332 2232335677


Q ss_pred             EEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHH
Q 021356          233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN  275 (313)
Q Consensus       233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e  275 (313)
                      ..-+|..+.+.   ++..        -|.++|||-- .+.++.+
T Consensus       318 ~~~EPlp~d~p---L~~~--------pNvilTPHiag~t~~~~~  350 (386)
T PLN03139        318 WYPQPAPKDHP---WRYM--------PNHAMTPHISGTTIDAQL  350 (386)
T ss_pred             CCCCCCCCCCh---hhcC--------CCeEEcccccccCHHHHH
Confidence            77888655443   2221        4788999863 3344444

>PLN02928 oxidoreductase family protein

Probab=99.50  E-value=1.9e-13  Score=132.98  Aligned_cols=170  Identities=21%  Similarity=0.190  Sum_probs=113.2

Q ss_pred             ccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH--H----C
Q 021356           87 ANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----A  160 (313)
Q Consensus        87 ~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--~----~  160 (313)
                      ..+++. +++|+|... ...+|.| +++||||+|.||..+|+.|+.+      |++|++..+..........  .    .
T Consensus       138 ~~~~~~-~~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~  208 (347)
T PLN02928        138 NEMQIS-LKARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVD  208 (347)
T ss_pred             HHHHHH-HHcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhcccccccc
Confidence            345555 888999643 2368999 9999999999999999999999      9998766554221111000  0    0


Q ss_pred             CceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021356          161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG  231 (313)
Q Consensus       161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~  231 (313)
                      .+.++.....+++|++++||+|++++|.+..++ +++ +.+..||+|++|++++ |-.      +..+++ +......++
T Consensus       209 ~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLD  287 (347)
T PLN02928        209 DLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAID  287 (347)
T ss_pred             ccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEc
Confidence            000000124589999999999999999998876 776 8999999999999764 532      233332 223234578


Q ss_pred             EEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021356          232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA  277 (313)
Q Consensus       232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a  277 (313)
                      |+..+|..+.+.   ++.        --|.++|||-- .+.+..+.+
T Consensus       288 V~~~EP~~~~~p---L~~--------~~nviiTPHia~~t~~~~~~~  323 (347)
T PLN02928        288 VAWSEPFDPDDP---ILK--------HPNVIITPHVAGVTEYSYRSM  323 (347)
T ss_pred             cCCCCCCCCCCh---hhc--------CCCEEECCcCCCChHHHHHHH
Confidence            888888554433   333        25899999863 344444443

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.47  E-value=4.2e-13  Score=128.95  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      +..|.+. .++|+|... +..++.| ++|||||+|.||+.+|+.|+.+      |++|++..+.... .     .++.. 
T Consensus       114 ~~~~~~~-~~~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-  177 (312)
T PRK15469        114 FDDYQAL-QNSSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-  177 (312)
T ss_pred             hHHHHHH-HHhCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-
Confidence            4455555 788999743 3468999 9999999999999999999999      9998766543221 1     12211 


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC  236 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vh  236 (313)
                      ..+..++++++++||+|++++|.+..++ +++ +.+..||+|++|++++ |-.      +..+++ +.......+|...+
T Consensus       178 ~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~E  256 (312)
T PRK15469        178 FAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSRE  256 (312)
T ss_pred             ecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCC
Confidence            0113478999999999999999999876 776 7999999999999765 532      233332 22222346777777


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      |..+.+.   ++.        =.|+++|||--
T Consensus       257 Pl~~~~p---l~~--------~~nvi~TPHia  277 (312)
T PRK15469        257 PLPPESP---LWQ--------HPRVAITPHVA  277 (312)
T ss_pred             CCCCCCh---hhc--------CCCeEECCcCC
Confidence            7533322   332        15889999863

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.47  E-value=2.9e-13  Score=134.45  Aligned_cols=156  Identities=20%  Similarity=0.218  Sum_probs=108.3

Q ss_pred             cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +..+++. +++|+|... ....+|.| +++||||+|.||..+|+.++.+      |++|+++++. ..    ....++..
T Consensus       127 ~~~~~~~-~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~-~~----~~~~~~~~  193 (409)
T PRK11790        127 IPEKNAK-AHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIE-DK----LPLGNARQ  193 (409)
T ss_pred             hHHHHHH-HHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCC-cc----cccCCcee
Confidence            4456666 899999643 23478999 9999999999999999999999      9998655543 11    11122321


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+.++ |-.      +..+++ +.......+|...
T Consensus       194 ----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gaalDVf~~  268 (409)
T PRK11790        194 ----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS-GHLAGAAIDVFPV  268 (409)
T ss_pred             ----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc-CCceEEEEcCCCC
Confidence                3489999999999999999998776 776 8999999999999765 532      233332 2222335677777


Q ss_pred             ccCCCchhHH-HHHHhcccccCCCceEEEEecc
Q 021356          236 CPKGMGPSVR-RLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       236 hPn~pg~~~r-~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +|..+..... .++..        -|.+++||-
T Consensus       269 EP~~~~~~~~~pL~~~--------~nvilTPHi  293 (409)
T PRK11790        269 EPKSNGDPFESPLRGL--------DNVILTPHI  293 (409)
T ss_pred             CCCCccccccchhhcC--------CCEEECCcC
Confidence            7754321111 13332        479999986

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.46  E-value=6.1e-13  Score=135.84  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=110.9

Q ss_pred             cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +..+++. +|+|+|... +...+|.| ++|||||+|.||+++|+.|+.+      |++|+++++..  ..+.+.+.|+..
T Consensus       114 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~  183 (525)
T TIGR01327       114 IPQADAS-LKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL  183 (525)
T ss_pred             HHHHHHH-HHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE
Confidence            4456666 899999643 23468999 9999999999999999999999      99976555432  233445566642


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-.      +..+++ +......++|+..
T Consensus       184 ----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~  258 (525)
T TIGR01327       184 ----VDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE-GHVRAAALDVFEK  258 (525)
T ss_pred             ----cCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc-CCeeEEEEecCCC
Confidence                3479999999999999999998766 775 7899999999999765 432      223332 2222335677777


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      +|. +.+   .|+..        -|.++|||--
T Consensus       259 EP~-~~~---pL~~~--------~nvi~TPHia  279 (525)
T TIGR01327       259 EPP-TDN---PLFDL--------DNVIATPHLG  279 (525)
T ss_pred             CCC-CCC---hhhcC--------CCeEECCCcc
Confidence            882 222   23431        4788999863

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.45  E-value=3.2e-12  Score=120.43  Aligned_cols=154  Identities=17%  Similarity=0.178  Sum_probs=110.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL  169 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~~~  169 (313)
                      |++|+|||.|.||.++|..+...      |++|++.++.. +..+.+.+.            ....++         ...
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   75 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISD-EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT   75 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence            48999999999999999999988      99887666543 322222211            111000         013


Q ss_pred             CCHHhhhccCCEEEEcccchh--HHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021356          170 GDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a--~~~vi~ei~~~mk~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      .+.++++++||+||.++|.+.  ..++++++.+.++++++|++ .++..+..+.+   ..+...+|++.||-.|...   
T Consensus        76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~---  149 (287)
T PRK08293         76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK---  149 (287)
T ss_pred             CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence            577888999999999999764  34588899999999999864 44554544543   2333457999999666543   


Q ss_pred             HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                                 ...+.+++...++++.++.+.++++.+|..-
T Consensus       150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~p  180 (287)
T PRK08293        150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVP  180 (287)
T ss_pred             -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence                       2456688889999999999999999999543

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.44  E-value=1.3e-12  Score=126.40  Aligned_cols=156  Identities=13%  Similarity=0.156  Sum_probs=105.9

Q ss_pred             cccchhhhhhcCCCccc--ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      +..+++. +++|+|.+.  ....+|.| ++|||||+|.||+++|+.|+.+      |++|++.++.. ....     ++.
T Consensus       121 ~~~~~~~-~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~-~~~~-----~~~  186 (330)
T PRK12480        121 FPDIERR-VQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYP-NKDL-----DFL  186 (330)
T ss_pred             HHHHHHH-HHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCh-hHhh-----hhh
Confidence            4455666 788876432  23478999 9999999999999999999999      99987665442 2111     111


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~  234 (313)
                      .   ...++++++++||+|++|+|.+..+. ++. +++++||+|++|++++ |-.+      ..+++ +......++|+.
T Consensus       187 ~---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~-g~i~gaalDV~~  262 (330)
T PRK12480        187 T---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND-GTLLGAAIDTYE  262 (330)
T ss_pred             h---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc-CCeeEEEEeccC
Confidence            1   13478999999999999999998754 665 8899999999999664 5422      23332 222233567777


Q ss_pred             eccCC----------CchhHHHHHHhcccccCCCceEEEEecc
Q 021356          235 VCPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       235 vhPn~----------pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      -+|..          ..+....++..        -|.++|||-
T Consensus       263 ~EP~~~~~~~~~~~~~~~~~~~L~~~--------~nvilTPHi  297 (330)
T PRK12480        263 NEAAYFTNDWTNKDIDDKTLLELIEH--------ERILVTPHI  297 (330)
T ss_pred             CCCccccccccccccCchhhHHHhcC--------CCEEECCcc
Confidence            78731          11212234442        489999986

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.43  E-value=7.8e-13  Score=135.11  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=111.0

Q ss_pred             cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +..+++. +++|+|... +.-.+|.| ++|||||+|.||+.+|+.|+.+      |++|+++++..  ..+.+...|+. 
T Consensus       116 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~-  184 (526)
T PRK13581        116 IPQAHAS-LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVE-  184 (526)
T ss_pred             HHHHHHH-HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCE-
Confidence            4456666 899999643 23368999 9999999999999999999999      99976655432  22344556765 


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..+++|++++||+|++|+|.+..++ +++ +.++.||+|+++++++ |-.      +..+++ +......++|+..
T Consensus       185 ----~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~  259 (526)
T PRK13581        185 ----LVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS-GKVAGAALDVFEK  259 (526)
T ss_pred             ----EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc-CCeeEEEEecCCC
Confidence                2389999999999999999998766 775 8999999999999765 432      223322 2232345677777


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      +|. +.+   .|+..        -|.++|||--
T Consensus       260 EP~-~~~---pL~~~--------~nvilTPHia  280 (526)
T PRK13581        260 EPP-TDS---PLFEL--------PNVVVTPHLG  280 (526)
T ss_pred             CCC-CCc---hhhcC--------CCeeEcCccc
Confidence            883 222   23432        4788999863

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.43  E-value=2e-12  Score=125.32  Aligned_cols=167  Identities=20%  Similarity=0.200  Sum_probs=120.5

Q ss_pred             ccccchhhhhhcCCCcc-cc--cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           85 SLANRDEFIVRGGRDLF-KL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f-~~--~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      ++...+|. +++|+|.. +.  ...++.| |+|||+|+|.||..+|+.|+.+      |+.+.+..|. +...+.+.+.+
T Consensus       135 ~~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~  205 (336)
T KOG0069|consen  135 RFSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY  205 (336)
T ss_pred             hhhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence            68888888 99999933 21  3589999 9999999999999999999999      9655444443 34445555555


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~-~Gv~l------~~~~~~~~~l~~~i~v  232 (313)
                      ..     ..+++|.+.+||+|++|||++..+. +++ +.+.+||+|.+|+.+ -|-.+      ..+ ..+...+.+.+|
T Consensus       206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL-~sG~i~~aGlDV  279 (336)
T KOG0069|consen  206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL-KSGKIAGAGLDV  279 (336)
T ss_pred             cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH-hcCCcccccccc
Confidence            44     3489999999999999999999886 887 899999999999955 45422      222 234455668889


Q ss_pred             EEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHHH
Q 021356          233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVAL  278 (313)
Q Consensus       233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a~  278 (313)
                      .--+| .+-+.   ++.        =-|.+++||= .++.+..+...
T Consensus       280 f~~EP-~~~~~---l~~--------~dnvv~~PHigs~t~~t~~~m~  314 (336)
T KOG0069|consen  280 FEPEP-PVDHP---LLT--------LDNVVILPHIGSATLETREKMA  314 (336)
T ss_pred             cCCCC-CCCcc---hhc--------ccceeEecccccCcHHHHHHHH
Confidence            88888 43333   222        1357789975 44444444443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.43  E-value=2.2e-12  Score=122.76  Aligned_cols=148  Identities=22%  Similarity=0.225  Sum_probs=106.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|+|||+|+||..+|++|.+.      |+++.+++|..++..+.+.+.|...    ..+..|+++++|+||+++|+.++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~   70 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA   70 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence            5899999999999999999999      9999888888776677777778874    56788999999999999999998


Q ss_pred             HH-HH---HHHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEecc---CCCchhHHHHHHhcccccCCCceEEE
Q 021356          192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCP---KGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~-~~l~~~i~vV~vhP---n~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      .+ ++   +.+.+.+|||++++|++.+.....++.. ..-..+..|+- .|   -.++..      +|        .-.|
T Consensus        71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD-APVsGg~~~A~------~G--------tLti  135 (286)
T COG2084          71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD-APVSGGVPGAA------AG--------TLTI  135 (286)
T ss_pred             HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe-cCccCCchhhh------hC--------ceEE
Confidence            76 66   3689999999999999877421111000 01122444443 12   011111      22        2334


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~  286 (313)
                      .+..+  +++.+.++-+++.+|.
T Consensus       136 mvGG~--~~~f~r~~pvl~~~g~  156 (286)
T COG2084         136 MVGGD--AEAFERAKPVLEAMGK  156 (286)
T ss_pred             EeCCC--HHHHHHHHHHHHHhcC
Confidence            45544  6899999999999995

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.42  E-value=6.1e-13  Score=104.87  Aligned_cols=89  Identities=24%  Similarity=0.278  Sum_probs=70.8

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCC---cEEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      ||||||.|+||.+++++|.+.      |   .+|.+. .++.++..+.+.+.+...   ...+..|+++++|+|+|++||
T Consensus         1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~advvilav~p   71 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA---TADDNEEAAQEADVVILAVKP   71 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE---ESEEHHHHHHHTSEEEE-S-G
T ss_pred             CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc---ccCChHHhhccCCEEEEEECH
Confidence            799999999999999999999      8   788766 555444455667777543   122789999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEe
Q 021356          189 AAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +...+++.++ +...++++|+++
T Consensus        72 ~~~~~v~~~i-~~~~~~~~vis~   93 (96)
T PF03807_consen   72 QQLPEVLSEI-PHLLKGKLVISI   93 (96)
T ss_dssp             GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred             HHHHHHHHHH-hhccCCCEEEEe
Confidence            9999999999 777889988854

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06444 prephenate dehydrogenase; Provisional

Probab=99.42  E-value=1.9e-12  Score=117.12  Aligned_cols=123  Identities=15%  Similarity=0.054  Sum_probs=96.4

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|+|||- |.||..++..+++.      |+.|.                               +++||+|+||+|+..
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~   43 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA   43 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence            58999997 99999999999999      98763                               248999999999999


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh--HHHHHHhcccccCCCceEEEEeccC
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      ..++++++.      .+|+|++|++....+.       ..+||+.|| +.|+.  ..++|          .+++++ .++
T Consensus        44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HP-MfGp~~a~~~lf----------~~~iv~-~~~   98 (197)
T PRK06444         44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHP-LFGPMSYNDGVH----------RTVIFI-NDI   98 (197)
T ss_pred             HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCC-CCCCCcCccccc----------ceEEEE-CCC
Confidence            999998764      3788999998633321       347999999 44533  22233          256665 556


Q ss_pred             CCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021356          269 VDGRATNVALGWSVALGSPFTFATTLEQEYK  299 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~  299 (313)
                      .++++++.+++||+  | .+++++|+++|=+
T Consensus        99 ~~~~~~~~~~~l~~--G-~~~~~~t~eeHD~  126 (197)
T PRK06444         99 SRDNYLNEINEMFR--G-YHFVEMTADEHDL  126 (197)
T ss_pred             CCHHHHHHHHHHHc--C-CEEEEeCHHHHHH
Confidence            77888999999998  6 6999999999943

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.42  E-value=3.9e-12  Score=128.95  Aligned_cols=151  Identities=17%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~  170 (313)
                      |++|||||+|+||.++|.++...      |++|++.++..+. .+...                   ..| +.    ...
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~----~~~   72 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEA-ERIIGEVLANAERAYAMLTDAPLPPEGRLT----FCA   72 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHhhhccchhhhhhceE----eeC
Confidence            48999999999999999999999      9998877765332 21110                   012 22    145


Q ss_pred             CHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      ++.+++++||+|+.++|++...  .++.++.+.++++++|. .++|+.+..+.+   .+...-.++..||+.|...    
T Consensus        73 ~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----  145 (495)
T PRK07531         73 SLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----  145 (495)
T ss_pred             CHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc----
Confidence            7888999999999999999743  37778888888887664 566776666654   3344457999999888764    


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                +.-..+++.+.++++.++.++.+++.+|..-+
T Consensus       146 ----------~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v  177 (495)
T PRK07531        146 ----------LPLVELVGGGKTSPETIRRAKEILREIGMKPV  177 (495)
T ss_pred             ----------CceEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence                      22345778888899999999999999996543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.42  E-value=6.7e-12  Score=118.19  Aligned_cols=154  Identities=15%  Similarity=0.078  Sum_probs=111.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~  170 (313)
                      |++|+|||+|.||.++|..|.+.      |++|++.++. ++..+.+.+           .|...+.         ....
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   73 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIK-QEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL   73 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence            58999999999999999999999      9988766654 333333221           1111000         0134


Q ss_pred             CHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      +.++++++||+||+++|.+...  .++.++.+.++++++| ++++.+.+..+.+   ......++++.|+-.|...    
T Consensus        74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~----  146 (288)
T PRK09260         74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK----  146 (288)
T ss_pred             cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence            6778999999999999988754  3778888899999987 4777777666554   3333357899999755433    


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                                +.-..+++...++++.++.++.+++.+|..-
T Consensus       147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~  177 (288)
T PRK09260        147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKET  177 (288)
T ss_pred             ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence                      2355678888889999999999999999543

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=99.40  E-value=1.6e-12  Score=125.27  Aligned_cols=175  Identities=21%  Similarity=0.162  Sum_probs=128.1

Q ss_pred             ccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           87 ANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        87 ~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      ...... ++.|+|... +.-.+|.| ||+||||+|.||.-+|+.++..      |++++.+++..+  .+++...|+.  
T Consensus       123 ~~A~~s-~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~~--~~~~~a~gvq--  190 (406)
T KOG0068|consen  123 GQASAS-MKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPITP--MALAEAFGVQ--  190 (406)
T ss_pred             chhhee-eecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCCc--hHHHHhccce--
Confidence            333434 899999664 45689999 9999999999999999999999      999876665543  4577778887  


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-C-c-----hhhhhhhcccCCCCCccEEEec
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-G-F-----LLGHLQSIGLDFPKNIGVIAVC  236 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-G-v-----~l~~~~~~~~~l~~~i~vV~vh  236 (313)
                         ..+++|+++.||+|.||||..+.++ +++ +.+..||+|.-|+.++ | +     .+..+++ +..-..-++|+..+
T Consensus       191 ---~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~E  266 (406)
T KOG0068|consen  191 ---LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEE  266 (406)
T ss_pred             ---eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCC
Confidence               5699999999999999999999876 776 8899999999998653 4 3     1233333 33434568888889


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEeccCCC-HH-----HHHHHHHHHHHcCC
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GR-----ATNVALGWSVALGS  286 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~-~e-----a~e~a~~L~~alG~  286 (313)
                      |..-+- .++|-.        =-|.+.|||.-.+ .|     +.|.++++...+..
T Consensus       267 pp~~~~-~~~Lv~--------hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~  313 (406)
T KOG0068|consen  267 PPKNGW-DSELVS--------HPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING  313 (406)
T ss_pred             CCccch-hHHHhc--------CCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence            855431 233332        1478899998544 33     34556666666654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.39  E-value=1.2e-11  Score=116.60  Aligned_cols=154  Identities=17%  Similarity=0.226  Sum_probs=111.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G  167 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------------~~G~~~~~---------~  167 (313)
                      |++|+|||.|.||.++|..+...      |++|++.+++ ++..+.+.              +.|...+.         .
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~   75 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVS-EEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR   75 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCC-HHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence            48999999999999999999999      9987766554 33333221              11211000         0


Q ss_pred             CcCCHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhH
Q 021356          168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV  244 (313)
Q Consensus       168 ~~~~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~  244 (313)
                      ...+. +.+++||+||+++|++..  .++++++.+.++++++|+ .++|..+..+..   .+....+|++.||..|.+.+
T Consensus        76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~  151 (291)
T PRK06035         76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM  151 (291)
T ss_pred             eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence            12234 578999999999999874  458888988999999876 567777666654   33445689999999988773


Q ss_pred             HHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                            +      +..  +.+.+.++++.++.+..+++.+|..-+
T Consensus       152 ------~------~vE--v~~g~~T~~e~~~~~~~~~~~lgk~~v  182 (291)
T PRK06035        152 ------K------LIE--VVRAALTSEETFNTTVELSKKIGKIPI  182 (291)
T ss_pred             ------c------cEE--EeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence                  1      222  458888999999999999999996543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.38  E-value=1.1e-11  Score=112.59  Aligned_cols=158  Identities=18%  Similarity=0.147  Sum_probs=108.3

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      |+|+||| .|+||.++++.|.+.      |++|+++.|..++..+.+.+       .|+.. .....+..++++++|+||
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi   73 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI   73 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence            6899997 999999999999998      98888776654333222221       12210 001236678899999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEe-cCchh-----------------hhhhhcccCCCCCccEEEeccCCCchhHH
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR  245 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~-~Gv~l-----------------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r  245 (313)
                      +++|++.+.++++++.+.++ +++|+++ .|+..                 ..+++   .+|.+.++|+.+||.+.....
T Consensus        74 lavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~  149 (219)
T TIGR01915        74 LAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ  149 (219)
T ss_pred             EECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence            99999999999988877775 4777754 56654                 22333   455546899999999877643


Q ss_pred             HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCce
Q 021356          246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT  289 (313)
Q Consensus       246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al-G~~~~  289 (313)
                      .      ...+.+... + ...| ++++.+.+.+|.+.+ |+.-+
T Consensus       150 ~------~~~~~~~~~-~-v~Gd-d~~ak~~v~~L~~~~~G~~~v  185 (219)
T TIGR01915       150 D------VDDEVDCDV-L-VCGD-DEEAKEVVAELAGRIDGLRAL  185 (219)
T ss_pred             C------CCCCCCCCE-E-EECC-CHHHHHHHHHHHHhcCCCCcc
Confidence            2      112234444 3 2333 356999999999999 98754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02306 hydroxypyruvate reductase

Probab=99.38  E-value=3.8e-12  Score=125.76  Aligned_cols=170  Identities=20%  Similarity=0.223  Sum_probs=109.6

Q ss_pred             ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHH-HH
Q 021356           85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-AR  158 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~-A~  158 (313)
                      ++..+++. +++|+|. +.   ..-.+|.| ++|||||+|.||..+|+.++ .+      |++|++.++........ ..
T Consensus       137 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~  208 (386)
T PLN02306        137 RIVEADEF-MRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVT  208 (386)
T ss_pred             ChHHHHHH-HHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhh
Confidence            35556666 8889883 21   12368999 99999999999999999985 78      99986555432211110 01


Q ss_pred             HCCc-------eecC-CCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhh
Q 021356          159 AAGF-------TEEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQS  221 (313)
Q Consensus       159 ~~G~-------~~~~-~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~  221 (313)
                      ..|.       .... ....+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-.      +..+++
T Consensus       209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s  288 (386)
T PLN02306        209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA  288 (386)
T ss_pred             hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            1221       0000 012489999999999999999998876 887 8999999999999764 532      233332


Q ss_pred             cccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHH
Q 021356          222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN  275 (313)
Q Consensus       222 ~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e  275 (313)
                       +......++|+..+|. +..   .++..        -|.++|||- ..+.+..+
T Consensus       289 -g~i~gAaLDVf~~EP~-~~~---~L~~~--------pNVilTPHiag~T~e~~~  330 (386)
T PLN02306        289 -NPMFRVGLDVFEDEPY-MKP---GLADM--------KNAVVVPHIASASKWTRE  330 (386)
T ss_pred             -CCeeEEEEeCCCCCCC-Ccc---hHhhC--------CCEEECCccccCcHHHHH
Confidence             2233345677777884 221   24432        489999985 23444433

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.36  E-value=4.9e-12  Score=118.00  Aligned_cols=149  Identities=21%  Similarity=0.256  Sum_probs=122.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +++||||.|+|..++++++...      |+    +++... +...+... .+..|+..    +.+..++++.+|++++++
T Consensus         1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~-~~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv   69 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASV-QTERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV   69 (267)
T ss_pred             CceeEechhhhHHHHHhccccc------CCCchhheeeec-CchhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence            5789999999999999999888      76    343333 33444444 67778764    445588999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      +|+.+.+++.++...+..++||+ ...|+++..++.   .++...++||+|||+|...       |     +|+.+ ++.
T Consensus        70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v-------~-----eg~sv-~~~  133 (267)
T KOG3124|consen   70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV-------G-----EGASV-YAI  133 (267)
T ss_pred             cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh-------h-----cCcEE-Eee
Confidence            99999999999888788888876 888999888876   5556689999999999987       3     77875 899


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCC
Q 021356          266 HQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ..+++.+..+++++++..+|..
T Consensus       134 g~~~~~~D~~l~~~ll~~vG~~  155 (267)
T KOG3124|consen  134 GCHATNEDLELVEELLSAVGLC  155 (267)
T ss_pred             CCCcchhhHHHHHHHHHhcCcc
Confidence            8899999999999999999964

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.36  E-value=1.7e-12  Score=109.94  Aligned_cols=114  Identities=26%  Similarity=0.314  Sum_probs=74.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|+|||.|++|.++++.|.+.      |++|.-.+.++..+.+++...  .. .....+++|+++++|+|+|++||+++
T Consensus        11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI   81 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI   81 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence            8999999999999999999999      998654444444444444332  21 12245778999999999999999999


Q ss_pred             HHHHHHHHhc--CCCCcEEEEecCch-hhhhhhcccCCCCCccEEEecc
Q 021356          192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP  237 (313)
Q Consensus       192 ~~vi~ei~~~--mk~gaiLid~~Gv~-l~~~~~~~~~l~~~i~vV~vhP  237 (313)
                      .++.+++...  .++|++|++++|.. ...++.   .-..+..+...||
T Consensus        82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP  127 (127)
T ss_dssp             HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred             HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence            9999999987  89999999999874 434432   1123566777887

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.34  E-value=2.7e-11  Score=115.05  Aligned_cols=147  Identities=16%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hhccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e---~i~~ADvIiLavP~  188 (313)
                      |+|||||+|.||.++|++|.+.      |++|.++++. ++..+...+.|...    ..+.++   .++++|+|++++|+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~-~~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~   69 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHD-QDAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH   69 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence            5899999999999999999999      9988765554 44455566666653    235544   44678999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      ....++++++.+.+++|++|+|++...   ......  ..-..+++|+.....+....    -+       .|. + +.+
T Consensus        70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~----a~-------~G~-~-~~~  134 (298)
T TIGR00872        70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWG----RE-------RGY-C-FMI  134 (298)
T ss_pred             hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHH----Hh-------cCC-e-eee
Confidence            977779999999999999999987652   111111  12245678888655442221    11       242 3 556


Q ss_pred             ccCCCHHHHHHHHHHHHHcCC
Q 021356          266 HQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~  286 (313)
                      ..+  +++.+.++.+++.+|.
T Consensus       135 gG~--~~~~~~~~~~l~~~~~  153 (298)
T TIGR00872       135 GGD--GEAFARAEPLFADVAP  153 (298)
T ss_pred             CCC--HHHHHHHHHHHHHhcC
Confidence            654  7899999999999996

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.33  E-value=1.7e-11  Score=113.66  Aligned_cols=133  Identities=20%  Similarity=0.229  Sum_probs=102.9

Q ss_pred             EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhh
Q 021356          142 VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQ  220 (313)
Q Consensus       142 ~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~  220 (313)
                      +|++..|+.++..+.+.+.|+..    ..+..++++++|+|||++||+...++++++.+.+.++++|+ .++|+.+..++
T Consensus        11 ~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~   86 (245)
T TIGR00112        11 DIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLS   86 (245)
T ss_pred             eEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHH
Confidence            57676665444334445567653    45778899999999999999999999999988777777665 78899998887


Q ss_pred             hcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       221 ~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      .   .++.+..++|+|||+|...       |     .|++. +++.++.+.+..+.++.||..+|  .+++.. |++
T Consensus        87 ~---~~~~~~~ivR~mPn~~~~~-------~-----~g~t~-~~~~~~~~~~~~~~v~~lf~~~G--~~~~v~-E~~  144 (245)
T TIGR00112        87 Q---LLGGTRRVVRVMPNTPAKV-------G-----AGVTA-IAANANVSEEDRALVLALFKAVG--EVVELP-EAL  144 (245)
T ss_pred             H---HcCCCCeEEEECCChHHHH-------h-----CCeEE-EecCCCCCHHHHHHHHHHHHhCC--CEEEEC-HHH
Confidence            6   5665668999999998876       3     46777 78888899999999999999999  444444 443

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.33  E-value=3.1e-11  Score=114.73  Aligned_cols=151  Identities=15%  Similarity=0.082  Sum_probs=104.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |+|||||+|+||.++|++|.+.      |++|.++++.. + .+...+.|...    ..+..|++++||+||+++|+...
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~   68 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ   68 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence            4799999999999999999999      99887776543 2 34445667653    45788999999999999999865


Q ss_pred             H-HHHH---HHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       192 ~-~vi~---ei~~~mk~gaiLid~~Gv~l~~~~~~~-~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      . +++.   .+.+.+++|++|+|++.+.....++.. ..-..++.|+. +|-.-+..   ..+.|       .-. +...
T Consensus        69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~-~~~g  136 (292)
T PRK15059         69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEI---GAREG-------TLS-IMVG  136 (292)
T ss_pred             HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHH---HHhcC-------cEE-EEEc
Confidence            4 4663   367778999999999887543221100 11134677887 58332222   22322       323 3344


Q ss_pred             cCCCHHHHHHHHHHHHHcCCCc
Q 021356          267 QDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~~  288 (313)
                      .  +++.++.++.+++.+|...
T Consensus       137 G--~~~~~~~~~p~l~~~g~~~  156 (292)
T PRK15059        137 G--DEAVFERVKPLFELLGKNI  156 (292)
T ss_pred             C--CHHHHHHHHHHHHHHcCCc
Confidence            4  3788999999999999643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.32  E-value=5.4e-11  Score=112.15  Aligned_cols=154  Identities=20%  Similarity=0.232  Sum_probs=109.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec---------CCCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE---------NGTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~---------~~~~~  170 (313)
                      +++|+|||.|.||.++|..+...      |++|++.++. ++..+.+.+           .|...+         -....
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~   76 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVS-ADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT   76 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence            48999999999999999999999      9998776654 333322211           232100         00123


Q ss_pred             CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      +. +.+++||+||.++|....  ..++.++.+.++++++|+ +++++.+..+.+   .+....++++.|+--|.+.+   
T Consensus        77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~---  149 (292)
T PRK07530         77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM---  149 (292)
T ss_pred             CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence            55 457899999999998754  347889999999999886 888887766654   23334579999997666652   


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                         +      +  .-+.+...++++.++.+..+++.+|..-+
T Consensus       150 ---~------~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v  180 (292)
T PRK07530        150 ---K------L--VELIRGIATDEATFEAAKEFVTKLGKTIT  180 (292)
T ss_pred             ---c------e--EEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence               1      1  23677778889999999999999996543

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.32  E-value=2.9e-11  Score=114.83  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=102.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~---ADvIiLavP~  188 (313)
                      |+|||||+|+||.++|++|.+.      |++|+++++. ++..+...+.|...    ..+.++++++   +|+|++++|+
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~-~~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~   69 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVN-QEAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA   69 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence            5899999999999999999999      9988766554 34445556677653    4578888876   6999999999


Q ss_pred             h-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       189 ~-a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      . ...++++++.+.+++|++|+|++....   ..+.+  ..-..++.|+. +|-.-++.   .-+       .|. . +.
T Consensus        70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~  134 (299)
T PRK12490         70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE--ELAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM  134 (299)
T ss_pred             chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH--HHHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence            8 556688999999999999999876632   22211  11123566654 33111111   011       243 3 45


Q ss_pred             eccCCCHHHHHHHHHHHHHcCC
Q 021356          265 VHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~  286 (313)
                      +..+  +++.+.++.+++.+|.
T Consensus       135 ~gG~--~~~~~~~~~~l~~~~~  154 (299)
T PRK12490        135 VGGD--KEIYDRLEPVFKALAP  154 (299)
T ss_pred             ecCC--HHHHHHHHHHHHHhcC
Confidence            6654  6789999999999996

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.31  E-value=9.2e-11  Score=111.72  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=106.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~  170 (313)
                      |++|+|||.|.||.++|..|.+.      |++|++.++.. ...+.           ..+.|..+..         ....
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~-~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~   74 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADP-AAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD   74 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence            47899999999999999999999      99987776553 22222           2234532100         1245


Q ss_pred             CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      ++.+++++||+|+.++|....  ..++.++.+..+++.++. -+++.....+.+   .++....++..||-.|...+   
T Consensus        75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~---  148 (308)
T PRK06129         75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI---  148 (308)
T ss_pred             cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence            778899999999999998743  347777777666666554 233334444443   33445679999996654331   


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                                 .-..+++....+++.++.++.+++.+|..
T Consensus       149 -----------~lveiv~~~~t~~~~~~~~~~~~~~lG~~  177 (308)
T PRK06129        149 -----------PVVEVVPAPWTAPATLARAEALYRAAGQS  177 (308)
T ss_pred             -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence                       12347888888999999999999999954

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.30  E-value=6.4e-12  Score=121.50  Aligned_cols=135  Identities=19%  Similarity=0.187  Sum_probs=92.6

Q ss_pred             cccchhhhhhcCCCccc--ccccccCCCCEEEEEcccchHHHHHHHH-HhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIgIIG~G~mG~AlA~~L-r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +..+++. +++|.|.+.  ....+|.| ++|||||+|+||.++|+.| +.+      |++|+..++. ....   ...++
T Consensus       121 ~~~~~~~-~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~-~~~~---~~~~~  188 (332)
T PRK08605        121 FNQIQTK-VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPF-PNAK---AATYV  188 (332)
T ss_pred             hHHHHHH-HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCC-ccHh---HHhhc
Confidence            4445556 788877532  22468999 9999999999999999999 667      9987654433 2211   11222


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEE
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV  233 (313)
                      .    ...++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |..+      ..+++ +.......+|.
T Consensus       189 ~----~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~  263 (332)
T PRK08605        189 D----YKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTY  263 (332)
T ss_pred             c----ccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecc
Confidence            2    13488999999999999999999877 444 7889999999999765 4421      22222 22222346777


Q ss_pred             Eecc
Q 021356          234 AVCP  237 (313)
Q Consensus       234 ~vhP  237 (313)
                      ..+|
T Consensus       264 ~~Ep  267 (332)
T PRK08605        264 EFER  267 (332)
T ss_pred             cCCC
Confidence            7776

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.29  E-value=6.5e-11  Score=108.00  Aligned_cols=157  Identities=19%  Similarity=0.166  Sum_probs=105.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ||+|+|||.|+||.++|+.+.+.      |++|+++.+++++..+.+. ..+...   +..+++++++.+|+|+|++|-.
T Consensus         1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~   71 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE   71 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence            58999999999999999999999      9999999888776554333 333321   2458899999999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecC-----chh-------------hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhc
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG  251 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~G-----v~l-------------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G  251 (313)
                      .+.+++.++.+.+. |+||+|+.=     ...             ..+++   .+|.. ++|..-=+.+..    .++++
T Consensus        72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~----~l~~~  142 (211)
T COG2085          72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAA----VLADL  142 (211)
T ss_pred             HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHH----HhccC
Confidence            99999999999886 899997641     100             11111   23322 444322222222    22322


Q ss_pred             ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      ..-.  +...++...+  |.++.+.+.+|.+.+|+.-+
T Consensus       143 ~~~~--~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~l  176 (211)
T COG2085         143 AKPG--GRRDVLVAGD--DAEAKAVVAELAEDIGFRPL  176 (211)
T ss_pred             CCcC--CceeEEEecC--cHHHHHHHHHHHHhcCccee
Confidence            2111  2223233333  36899999999999998754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.29  E-value=3.6e-11  Score=113.19  Aligned_cols=151  Identities=20%  Similarity=0.214  Sum_probs=104.4

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA  192 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~  192 (313)
                      +|||||+|+||.++|+.|.+.      |++|++++++ ++..+.+.+.|...    ..+.++++++||+|++++|+....
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~   69 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIG-PEVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV   69 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence            589999999999999999999      9998766554 44455666677653    457889999999999999998665


Q ss_pred             H-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          193 D-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       193 ~-vi---~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      + ++   +.+.+.+++|++|+|++.+...   .+.+   .+ .++++|+. +|- .+...  ....       |... +.
T Consensus        70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~---~l~~~g~~~~~-~pv-~g~~~--~a~~-------g~l~-i~  134 (291)
T TIGR01505        70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK---AVKEKGIDYLD-APV-SGGEI--GAIE-------GTLS-IM  134 (291)
T ss_pred             HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCCEEe-cCC-CCCHH--HHhc-------CCEE-EE
Confidence            4 54   3477889999999998776432   2222   12 23677777 573 22221  1111       2333 34


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCCceeec
Q 021356          265 VHQDVDGRATNVALGWSVALGSPFTFAT  292 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~~~~~t  292 (313)
                      +..  ++++.+.++.+++.+|.. ++.+
T Consensus       135 ~gg--~~~~~~~~~~ll~~lg~~-~~~~  159 (291)
T TIGR01505       135 VGG--DQAVFDRVKPLFEALGKN-IVLV  159 (291)
T ss_pred             ecC--CHHHHHHHHHHHHHhcCC-eEEe
Confidence            444  368999999999999953 4433

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.27  E-value=1.5e-10  Score=111.87  Aligned_cols=154  Identities=16%  Similarity=0.114  Sum_probs=112.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE  174 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~~~~~~~e  174 (313)
                      |++|+|||.|.||.++|..+...      |++|.+.+... +..+.+           .+.|.....     ....++++
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~   79 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAP-GAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA   79 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence            58999999999999999999999      99988776543 222111           112211000     12457889


Q ss_pred             hhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhc
Q 021356          175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG  251 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G  251 (313)
                      ++++||+|+-++|.+...+  ++.++.+.++++++|. .+++..+..+.+   .+...-+|++.||--|.+-+ .     
T Consensus        80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~-p-----  150 (321)
T PRK07066         80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLL-P-----  150 (321)
T ss_pred             HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccC-c-----
Confidence            9999999999999887654  8889999999999775 556666655554   33334589999997776653 1     


Q ss_pred             ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                              -.=+.++..++++.++.+.++++.+|..-
T Consensus       151 --------LVEVv~g~~T~~e~~~~~~~f~~~lGk~p  179 (321)
T PRK07066        151 --------LVEVLGGERTAPEAVDAAMGIYRALGMRP  179 (321)
T ss_pred             --------eEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence                    12267888999999999999999999544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.23  E-value=1.2e-10  Score=110.03  Aligned_cols=153  Identities=18%  Similarity=0.157  Sum_probs=99.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee----------cCCCcCCHHhhhccCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----------ENGTLGDIYETISGSD  180 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~----------~~~~~~~~~e~i~~AD  180 (313)
                      ||+|+|||+|.||.++|..|.+.      |++|.+..+. ++..+...+.|...          ......+.+++++++|
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   73 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARD-PEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD   73 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence            57999999999999999999998      9988766654 33333333332100          0001346778899999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec-Cchh-------hhhhhcccCCCC-CccEEEeccCCCchhHHHHHHhc
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSIGLDFPK-NIGVIAVCPKGMGPSVRRLYVQG  251 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv~l-------~~~~~~~~~l~~-~i~vV~vhPn~pg~~~r~lf~~G  251 (313)
                      +||+++|+....++++++.+.++++++|+++. |+..       ..+++   .++. ....+...|+.+...    . +|
T Consensus        74 ~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~----~-~g  145 (325)
T PRK00094         74 LILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV----A-RG  145 (325)
T ss_pred             EEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----H-cC
Confidence            99999999887889999999999999888665 7743       12222   2232 123455567543222    1 12


Q ss_pred             ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021356          252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~  286 (313)
                           ..... +...  .+.+..+.+..+++..|.
T Consensus       146 -----~~~~~-~~~~--~~~~~~~~~~~~l~~~~~  172 (325)
T PRK00094        146 -----LPTAV-VIAS--TDEELAERVQELFHSPYF  172 (325)
T ss_pred             -----CCcEE-EEEe--CCHHHHHHHHHHhCCCCE
Confidence                 11222 2222  246788888899988885

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.23  E-value=2.4e-10  Score=108.44  Aligned_cols=151  Identities=14%  Similarity=0.161  Sum_probs=102.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |++|+|||+|+||.++|++|.+.      |++|.+++++ .+..+...+.|...    ..+..+++++||+||+++|+..
T Consensus         1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~-~~~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~   69 (296)
T PRK15461          1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVN-PQAVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD   69 (296)
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence            46899999999999999999999      9988766654 44455555566642    4578899999999999999987


Q ss_pred             HH-HHHH---HHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          191 QA-DNYE---KIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       191 ~~-~vi~---ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      .. .++.   .+.+.+++|++++|++.+..   ..+..  .....++.|+. .|-.-+..  . -+.       |.-. +
T Consensus        70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~ld-apV~g~~~--~-a~~-------g~l~-~  135 (296)
T PRK15461         70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMMD-VPVGRTSD--N-AIT-------GTLL-L  135 (296)
T ss_pred             HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-ccCCCCHH--H-HHh-------CcEE-E
Confidence            54 4653   47788999999999876643   22221  11123566663 45222221  0 112       2333 3


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                      ....  +++..+.++.+++.+|...
T Consensus       136 ~~gg--~~~~~~~~~p~l~~~g~~~  158 (296)
T PRK15461        136 LAGG--TAEQVERATPILMAMGNEL  158 (296)
T ss_pred             EECC--CHHHHHHHHHHHHHHcCCe
Confidence            3443  3688999999999999643

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.21  E-value=2.2e-10  Score=108.76  Aligned_cols=147  Identities=18%  Similarity=0.142  Sum_probs=104.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~---ADvIiLavP~  188 (313)
                      |+|||||+|+||.++|++|.+.      |++|.++++. ++..+...+.|...    ..+.+|+++.   +|+|++++|+
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~   69 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRN-PEAVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA   69 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence            5899999999999999999999      9988776555 34445556677763    4578888875   6999999999


Q ss_pred             h-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       189 ~-a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      . ...++++.+.+.+++|.+++|++....   ..+..  ..-..++.|+. +|..=+...   =+       .|. . +-
T Consensus        70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~-~~  134 (301)
T PRK09599         70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-C-LM  134 (301)
T ss_pred             CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-e-EE
Confidence            8 455688889999999999998865532   11211  11134678885 774323221   01       243 3 34


Q ss_pred             eccCCCHHHHHHHHHHHHHcCC
Q 021356          265 VHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~  286 (313)
                      +..+  +++.+.++.+++.+|.
T Consensus       135 ~gG~--~~~~~~~~~~l~~~~~  154 (301)
T PRK09599        135 IGGD--KEAVERLEPIFKALAP  154 (301)
T ss_pred             ecCC--HHHHHHHHHHHHHHcc
Confidence            5543  6889999999999996

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.20  E-value=3.8e-10  Score=106.20  Aligned_cols=151  Identities=18%  Similarity=0.209  Sum_probs=101.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|||||+|.||.++|+.|.+.      |++|+++++ +.+..+...+.|...    ..+.++++++||+|++++|+...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~-~~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~   71 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDR-NPEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH   71 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcC-CHHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence            7899999999999999999998      998765544 444455556667653    45788999999999999998776


Q ss_pred             HH-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      .+ ++   +.+.+.+++|++++|++.+...   .+.+  .....+++|+.. |-.-+.. .  -.       .|... +.
T Consensus        72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~--~~~~~g~~~~d~-pv~g~~~-~--a~-------~g~l~-i~  137 (296)
T PRK11559         72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA--ALKAKGIEMLDA-PVSGGEP-K--AI-------DGTLS-VM  137 (296)
T ss_pred             HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH--HHHHcCCcEEEc-CCCCCHH-H--Hh-------hCcEE-EE
Confidence            54 55   3578889999999998877542   2222  011224555543 4221111 0  01       12333 33


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCCce
Q 021356          265 VHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      +..  +++..+.+..+++.+|..-+
T Consensus       138 ~gg--~~~~~~~~~~~l~~~~~~~~  160 (296)
T PRK11559        138 VGG--DKAIFDKYYDLMKAMAGSVV  160 (296)
T ss_pred             ECC--CHHHHHHHHHHHHHhcCCeE
Confidence            333  36889999999999996433

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.19  E-value=1.7e-10  Score=117.22  Aligned_cols=153  Identities=14%  Similarity=0.073  Sum_probs=105.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhcc---CCEEEE
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL  184 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~i~~---ADvIiL  184 (313)
                      +.+|||||+|.||.++|++|.+.      |++|.+++|..++..+...+   .|... -....+++|+++.   +|+||+
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~   78 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII   78 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence            37899999999999999999999      99998888765444332221   14310 0014578888876   999999


Q ss_pred             cccchhHHH-HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       185 avP~~a~~~-vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      ++|+...++ +++.+.+.+++|.+|+|.+-...   ....+  ..-.++++|+. +|-.=++.   .=+       .|. 
T Consensus        79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~---gA~-------~G~-  144 (493)
T PLN02350         79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEE---GAR-------NGP-  144 (493)
T ss_pred             ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHH---Hhc-------CCC-
Confidence            999988765 88899999999999999876532   12211  12134677765 34111111   001       243 


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      . |.+..+  +++.+.++.+++.+|.+
T Consensus       145 ~-im~GG~--~~a~~~v~pvL~~ia~k  168 (493)
T PLN02350        145 S-LMPGGS--FEAYKNIEDILEKVAAQ  168 (493)
T ss_pred             e-EEecCC--HHHHHHHHHHHHHHhhh
Confidence            4 677765  68999999999999964

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.19  E-value=3.5e-10  Score=106.70  Aligned_cols=147  Identities=20%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             EEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH-HHH
Q 021356          116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN  194 (313)
Q Consensus       116 IIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~-~~v  194 (313)
                      |||+|+||.++|++|.+.      |++|.+++++ ++..+...+.|...    ..+..++++++|+||+++|+..+ .++
T Consensus         1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v   69 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKA------GHPVRVFDLF-PDAVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV   69 (288)
T ss_pred             CCcccHhHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence            699999999999999999      9988776655 34455566667653    45888999999999999998655 567


Q ss_pred             H---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021356          195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD  270 (313)
Q Consensus       195 i---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~  270 (313)
                      +   +.+.+.+++|++|+|++++.....+.....+ ..++.|+.. |-. +..  ...+.|       ... +-...+  
T Consensus        70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~-Gg~--~~a~~g-------~l~-~~~gg~--  135 (288)
T TIGR01692        70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVS-GGV--GGARAG-------TLT-FMVGGV--  135 (288)
T ss_pred             HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCC-CCH--HHHhhC-------cEE-EEECCC--
Confidence            7   5788899999999999987542221111122 246777764 622 211  122333       333 333333  


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 021356          271 GRATNVALGWSVALGSP  287 (313)
Q Consensus       271 ~ea~e~a~~L~~alG~~  287 (313)
                      ++..+.++.+++.+|..
T Consensus       136 ~~~~~~~~~~l~~~g~~  152 (288)
T TIGR01692       136 AEEFAAAEPVLGPMGRN  152 (288)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            57889999999999954

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.18  E-value=6.9e-11  Score=123.98  Aligned_cols=115  Identities=13%  Similarity=-0.041  Sum_probs=90.1

Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCC-ccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~-i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      ||||+|+..+.++++++.++++++++|+|++|++....+.....++.+ .+||+.|| +.|++ ...|+......++|++
T Consensus         1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence            689999999999999999999999999999999853332211234432 57999999 44554 2233333333345799


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK  299 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~  299 (313)
                      +++||.++.+.++++.+++||..+| .+++.+|+++|=+
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD~  116 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHDR  116 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHHH
Confidence            9999999999999999999999999 7899999999943

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.17  E-value=7.8e-10  Score=112.81  Aligned_cols=155  Identities=15%  Similarity=0.152  Sum_probs=113.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL  169 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~  169 (313)
                      .|++|||||+|.||..+|..+...      |++|++.++..+ ..+.           ..+.|...+.         ...
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~   78 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV   78 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence            468999999999999999999999      999877766533 3333           2444521000         013


Q ss_pred             CCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021356          170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      .+.++ +++||+||-++|.+...+  ++.++...++++++| ++++++.+..+..   .....-+|++.|.--|.+.+  
T Consensus        79 ~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~v~--  152 (507)
T PRK08268         79 EALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVPLM--  152 (507)
T ss_pred             CCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcccC--
Confidence            46655 679999999999888754  677888888999998 4888887766654   22333579999997777764  


Q ss_pred             HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                  .-..+++...++++.++.+..+++.+|..-+
T Consensus       153 ------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv  183 (507)
T PRK08268        153 ------------KLVEVVSGLATDPAVADALYALARAWGKTPV  183 (507)
T ss_pred             ------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence                        1244677778899999999999999996543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.16  E-value=6.1e-10  Score=112.71  Aligned_cols=151  Identities=15%  Similarity=0.120  Sum_probs=102.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhc---cCCEEEE
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETIS---GSDLVLL  184 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~i~---~ADvIiL  184 (313)
                      +.+|||||+|+||.++|++|.+.      |++|.+++|..++..+...   ..|...  ....+++|+++   ++|+|++
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence            36899999999999999999999      9998877766443322221   124321  12458888886   5899999


Q ss_pred             cccchhHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021356          185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       185 avP~~a~~-~vi~ei~~~mk~gaiLid~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      ++|+.... ++++++.+++++|.+|+|.+...    ....+.   ...++++|+..-=.+ +..   .-+       .|.
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fldapVSG-G~~---gA~-------~G~  138 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLGMGVSG-GEE---GAR-------YGP  138 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEcCCCCC-CHH---HHh-------cCC
Confidence            98887665 58899999999999999987542    111111   224567776532212 111   111       233


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          260 NSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       260 ~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                       + +.+..+  +++.+.++.+++.++.+
T Consensus       139 -~-lm~GG~--~~a~~~~~piL~~ia~~  162 (470)
T PTZ00142        139 -S-LMPGGN--KEAYDHVKDILEKCSAK  162 (470)
T ss_pred             -E-EEEeCC--HHHHHHHHHHHHHHhhh
Confidence             4 677765  68999999999999975

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.16  E-value=7.1e-11  Score=116.47  Aligned_cols=150  Identities=17%  Similarity=0.199  Sum_probs=99.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+|.| ++|||||+|+||+.+|+.|+.+      |++|++.++....     .....     ...++++++++||+|++|
T Consensus       112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~-----~~~~L~ell~~sDiI~lh  174 (378)
T PRK15438        112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEG-----DFRSLDELVQEADILTFH  174 (378)
T ss_pred             CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----ccccc-----ccCCHHHHHhhCCEEEEe
Confidence            47899 9999999999999999999999      9998655432111     01111     145899999999999999


Q ss_pred             ccchhH-----HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021356          186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK  252 (313)
Q Consensus       186 vP~~a~-----~~vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~  252 (313)
                      +|.+..     ..+++ +.+..||+|++|+.++ |-.      +..+++ +......++|...+|. +...   ++..  
T Consensus       175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~--  247 (378)
T PRK15438        175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK--  247 (378)
T ss_pred             CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence            998873     45786 8899999999999765 532      233332 2222234667778884 2222   3331  


Q ss_pred             cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCC
Q 021356          253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGS  286 (313)
Q Consensus       253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~L~~alG~  286 (313)
                            .+ ++|||-- .+.+...     .+..+-+.+|.
T Consensus       248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~  280 (378)
T PRK15438        248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGH  280 (378)
T ss_pred             ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence                  23 7899852 3333333     33455556663

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.14  E-value=7.9e-10  Score=106.74  Aligned_cols=146  Identities=14%  Similarity=0.136  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHHH
Q 021356          123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK  197 (313)
Q Consensus       123 G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~e  197 (313)
                      |.++|++|.+.      |++|+++++..+    ...+...+.|...    ..+..|+++++|+||+++|+..+. ++++.
T Consensus        32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G  101 (341)
T TIGR01724        32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART  101 (341)
T ss_pred             HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence            88999999999      999888876532    1223466678764    457889999999999999999876 58788


Q ss_pred             HHhcCCCCcEEEEecCchhh----hhhhcccC-CCCCccEEEeccC-CCchhHHHHHHhcccccCCCceEEEEeccCCCH
Q 021356          198 IFSCMKPNSILGLSHGFLLG----HLQSIGLD-FPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG  271 (313)
Q Consensus       198 i~~~mk~gaiLid~~Gv~l~----~~~~~~~~-l~~~i~vV~vhPn-~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~  271 (313)
                      +++++++|++|+|++-+...    .++. .+. -++|+.+...||- -|+..-.+.|.-+      |..  +.-..-+++
T Consensus       102 Laa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~------~~~--~~~~~~A~e  172 (341)
T TIGR01724       102 IIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVPGTPQHGHYVIG------GKP--TAGKEMATE  172 (341)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCCCCCCCceeeec------ccc--ccccccCCH
Confidence            99999999999999876421    2221 122 2578999999993 3444433334432      222  345667889


Q ss_pred             HHHHHHHHHHHHcCCC
Q 021356          272 RATNVALGWSVALGSP  287 (313)
Q Consensus       272 ea~e~a~~L~~alG~~  287 (313)
                      +.++...+|.++.|..
T Consensus       173 e~i~~~~el~~~~~~~  188 (341)
T TIGR01724       173 EQISKCVELAKSTGKK  188 (341)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999953

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.13  E-value=4.2e-10  Score=113.80  Aligned_cols=147  Identities=18%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhh---ccCCEEEE
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL  184 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~i---~~ADvIiL  184 (313)
                      .|||||+|+||.++|++|.+.      |++|.+++|+.++. +...+.   |  +..    ..+.++++   +++|+|++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil   69 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML   69 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence            489999999999999999999      99988777765443 333333   2  332    34666665   47999999


Q ss_pred             cccchhH-HHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       185 avP~~a~-~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      ++|+... .++++++.+++++|.+|+|.+...   ......  ....+++.||.....+ +..   .=+       .|. 
T Consensus        70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~--~l~~~gi~fvdapVsG-G~~---gA~-------~G~-  135 (467)
T TIGR00873        70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK--ELKAKGILFVGSGVSG-GEE---GAR-------KGP-  135 (467)
T ss_pred             ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH--HHHhcCCEEEcCCCCC-CHH---HHh-------cCC-
Confidence            9999654 558899999999999999988542   111111  1224578888766654 221   111       233 


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      + +.+..+  .++.+.++.+++.++.+
T Consensus       136 ~-im~GG~--~~a~~~~~p~L~~ia~~  159 (467)
T TIGR00873       136 S-IMPGGS--AEAWPLVAPIFQKIAAK  159 (467)
T ss_pred             c-CCCCCC--HHHHHHHHHHHHHHhhh
Confidence            3 556665  68999999999999965

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.13  E-value=1.5e-09  Score=105.74  Aligned_cols=146  Identities=11%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhchhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHH
Q 021356          123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK  197 (313)
Q Consensus       123 G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~e  197 (313)
                      |.++|++|.+.      |++|++++++...    ..+...+.|+..    ..+..+++++||+||+++|+.. ..+++++
T Consensus        32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~  101 (342)
T PRK12557         32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN  101 (342)
T ss_pred             HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence            88999999998      9988777765331    234455677653    4577889999999999999988 5668899


Q ss_pred             HHhcCCCCcEEEEecCchhh----hhhhcccCCCC---CccEEEeccCCCchhHHHHHHhcccccCCCceEEE-----Ee
Q 021356          198 IFSCMKPNSILGLSHGFLLG----HLQSIGLDFPK---NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF-----AV  265 (313)
Q Consensus       198 i~~~mk~gaiLid~~Gv~l~----~~~~~~~~l~~---~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii-----tp  265 (313)
                      +.+.++++++|+|++.+...    .+..   .++.   .+.++..||   +...      |.+.   +.-+++     ++
T Consensus       102 L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p---~~v~------Gae~---g~l~Vm~gg~t~~  166 (342)
T PRK12557        102 ILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHP---AAVP------GTPQ---HGHYVIAGKTTNG  166 (342)
T ss_pred             HHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCC---cccc------cccc---chheEEeCCCccc
Confidence            99999999999998876432    2222   2232   334444454   3220      1100   111223     23


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          266 HQDVDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                      ....+++.++.++.+++++| .+++.++.
T Consensus       167 ~~~~~~e~~e~v~~LL~a~G-~~v~~~~~  194 (342)
T PRK12557        167 TELATEEQIEKCVELAESIG-KEPYVVPA  194 (342)
T ss_pred             ccCCCHHHHHHHHHHHHHcC-CEEEEeCH
Confidence            44557899999999999999 44566554

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.11  E-value=2.5e-09  Score=101.43  Aligned_cols=153  Identities=15%  Similarity=0.164  Sum_probs=109.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~  170 (313)
                      |++|||||.|.||..+|..+...      |++|++.++..+ ..+.           ..+.|...+.         ....
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~   77 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT   77 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence            47999999999999999999999      999877766533 2222           3333422100         0134


Q ss_pred             CHHhhhccCCEEEEcccchhHHH--HHHHHHhcC-CCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~m-k~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      +. +.+++||+||-++|.+...+  ++.++...+ +++++|.. +++..+..+..   .....-++++.|+-.|.+.+  
T Consensus        78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~--  151 (286)
T PRK07819         78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL--  151 (286)
T ss_pred             CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence            55 56899999999999988754  777777777 89999875 55555655543   22223479999997777663  


Q ss_pred             HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHH-HcCCCc
Q 021356          247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPF  288 (313)
Q Consensus       247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~-alG~~~  288 (313)
                          +        -.=+++...++++.++.+..++. .+|..-
T Consensus       152 ----~--------lvElv~~~~T~~~~~~~~~~~~~~~lgk~p  182 (286)
T PRK07819        152 ----P--------LVELVPTLVTSEATVARAEEFASDVLGKQV  182 (286)
T ss_pred             ----c--------eEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence                1        12378888999999999999988 599653

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.10  E-value=1.4e-10  Score=114.49  Aligned_cols=151  Identities=17%  Similarity=0.160  Sum_probs=100.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+|.| ++|||||+|+||..+|+.++.+      |++|++.++....     . .+..    ...+++|++++||+|++|
T Consensus       112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~----~~~~l~ell~~aDiV~lh  174 (381)
T PRK00257        112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDG----DFVSLERILEECDVISLH  174 (381)
T ss_pred             CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCc----cccCHHHHHhhCCEEEEe
Confidence            57899 9999999999999999999999      9998665432211     1 1211    145899999999999999


Q ss_pred             ccchh-----HHHHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021356          186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK  252 (313)
Q Consensus       186 vP~~a-----~~~vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~  252 (313)
                      +|.+.     ...+++ +.+..||+|++|+.++ |-.+      ..+++ +......++|...+|. +...   +..   
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~---L~~---  246 (381)
T PRK00257        175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLE---LAD---  246 (381)
T ss_pred             CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChh---hhh---
Confidence            99986     345776 7899999999999765 5322      22222 2222334666777884 2222   222   


Q ss_pred             cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021356          253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP  287 (313)
Q Consensus       253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~L~~alG~~  287 (313)
                            .|.++|||-- .+.+..+     .++.+.+.++..
T Consensus       247 ------~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~  281 (381)
T PRK00257        247 ------LCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP  281 (381)
T ss_pred             ------CCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence                  3788999863 3334332     334444555544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.09  E-value=2.5e-09  Score=109.10  Aligned_cols=154  Identities=12%  Similarity=0.127  Sum_probs=111.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~  170 (313)
                      +++|+|||.|.||..+|..+...      |++|++.++..+. .+.           ..+.|...+.         ....
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~   77 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT   77 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence            48999999999999999999999      9998877765332 222           2334421000         0134


Q ss_pred             CHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      ++++ +++||+||.++|.....+  ++.++...++++++|. .+++..+..+..   .+....++++.|.--|.+.+   
T Consensus        78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~---  150 (503)
T TIGR02279        78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM---  150 (503)
T ss_pred             CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence            6654 579999999999876643  7778888899999876 677777655543   33334579999997777764   


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                 .-..+.+...++++.++.+..+++.+|..-+
T Consensus       151 -----------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv  181 (503)
T TIGR02279       151 -----------ALVEVVSGLATAAEVAEQLYETALAWGKQPV  181 (503)
T ss_pred             -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence                       1244677888999999999999999996543

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=99.09  E-value=1.5e-09  Score=105.27  Aligned_cols=167  Identities=16%  Similarity=0.112  Sum_probs=121.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a  190 (313)
                      .+|||||+|+||+=+|.-+.+.      |+.++...|.+  -...+.+.|..-    .+.+.+++ +..|+|++|+.--.
T Consensus        53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils  120 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS  120 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence            8999999999999999999999      99887777765  234555666441    34555544 68999999999888


Q ss_pred             HHHHHHHHHhc-CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-
Q 021356          191 QADNYEKIFSC-MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-  268 (313)
Q Consensus       191 ~~~vi~ei~~~-mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-  268 (313)
                      +.+++...-.. +|.|++++|+-+++.-..+.....+|++++++.+|| +-|+..      + --.++|-+.++-.+.- 
T Consensus       121 iekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHp-mfGPks------v-nh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHP-MFGPKS------V-NHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             HHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecC-CcCCCc------C-CCccccCceEEEEeecc
Confidence            88888765444 899999999888863222211237899999999999 334431      0 1123566887766542 


Q ss_pred             ---CCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021356          269 ---VDGRATNVALGWSVALGSPFTFATTLEQEYK  299 (313)
Q Consensus       269 ---~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~  299 (313)
                         ..++.-|.+.+++.-.|+ ..+++|.++|-+
T Consensus       193 ~~~~r~ercE~fleIf~cegc-kmVemS~eeHDk  225 (480)
T KOG2380|consen  193 YAASRPERCEFFLEIFACEGC-KMVEMSYEEHDK  225 (480)
T ss_pred             ccccchHHHHHHHHHHHhcCC-eEEEEEeecccc
Confidence               237888999999999995 567888888744

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.06  E-value=3.1e-09  Score=94.45  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=100.8

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCcee---------cCCCcCCH
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTE---------ENGTLGDI  172 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~---------~~~~~~~~  172 (313)
                      +|+|||.|.||.++|..+...      |++|.+.+...+ ..+.+           .+.|...         .-....++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl   73 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL   73 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred             CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence            699999999999999999999      999887766432 22111           1112100         00113577


Q ss_pred             HhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHH
Q 021356          173 YETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV  249 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~  249 (313)
                      +++. +||+||=++|.....+  ++.++.+.++++++|. .+++..+..+..   .++..-+|++.|+-.|...+ .   
T Consensus        74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~-~---  145 (180)
T PF02737_consen   74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLM-P---  145 (180)
T ss_dssp             GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred             HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccC-c---
Confidence            7777 9999999999877643  8999999999999986 788888877765   33444689999997776642 1   


Q ss_pred             hcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       250 ~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                                -.=+.++..++++.++.+.++++.+|..
T Consensus       146 ----------lVEvv~~~~T~~~~~~~~~~~~~~~gk~  173 (180)
T PF02737_consen  146 ----------LVEVVPGPKTSPETVDRVRALLRSLGKT  173 (180)
T ss_dssp             ----------EEEEEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred             ----------eEEEeCCCCCCHHHHHHHHHHHHHCCCE
Confidence                      1226889999999999999999999843

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.01  E-value=5.6e-09  Score=103.35  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=99.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD  171 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~~  171 (313)
                      |+|+|||+|.||..+|..|.+.      |++|++.++. ++..+...                   +.| +..    ..+
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~-~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~   69 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDID-QEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD   69 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhc------CCeEEEEECC-HHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence            5899999999999999999998      9987655543 33222111                   123 221    346


Q ss_pred             HHhhhccCCEEEEcccchh----------HHHHHHHHHhcCCCCcEEEEecCchh---hhh----hhcccCCCCCcc-EE
Q 021356          172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLL---GHL----QSIGLDFPKNIG-VI  233 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a----------~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~----~~~~~~l~~~i~-vV  233 (313)
                      ..+++++||+||+++|...          ....++.+.+.+++|++|++.+++..   ..+    .+.........+ .+
T Consensus        70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v  149 (411)
T TIGR03026        70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL  149 (411)
T ss_pred             HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence            7788999999999999653          45567788899999999998876521   111    110000111233 36


Q ss_pred             EeccCCC--chhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcC-CCceeecChh
Q 021356          234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLE  295 (313)
Q Consensus       234 ~vhPn~p--g~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG-~~~~~~tT~~  295 (313)
                      ..+|...  +..+.+++.         ...++.-   .++++.+.++.+++.++ ...+..++++
T Consensus       150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~  202 (411)
T TIGR03026       150 AYNPEFLREGNAVHDLLN---------PDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIE  202 (411)
T ss_pred             EECCCcCCCCChhhhhcC---------CCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHH
Confidence            7777432  222222221         1232332   25789999999999997 3444444443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.00  E-value=2.4e-09  Score=102.60  Aligned_cols=150  Identities=13%  Similarity=0.096  Sum_probs=90.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~--~~~~~~~~e~i~~ADv  181 (313)
                      |+|+|||+|.||.++|..|.+.      |++|.++.|..+. .+...+.        |....  -....+++|+++++|+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~   77 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF   77 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence            8999999999999999999999      9998877765332 2222222        31100  0013477888999999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEE-EecCch-----hhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHHhcccc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI  254 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-----l~~~~~~-~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~  254 (313)
                      |++++|++...+++    +.++++.+++ .+.|+.     ...+.+. ......++ .+...|+.+....     +|   
T Consensus        78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~~~~gP~~a~~~~-----~~---  144 (328)
T PRK14618         78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV-AVLSGPNHAEEIA-----RF---  144 (328)
T ss_pred             EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe-EEEECccHHHHHH-----cC---
Confidence            99999999765555    5567887776 445653     2122210 00011122 3456775544321     11   


Q ss_pred             cCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021356          255 NGAGINSSFAVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       255 ~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~  286 (313)
                        .+...++ ..  .+.+..+.++.+++..|.
T Consensus       145 --~~~~~~~-~~--~~~~~~~~v~~ll~~~~~  171 (328)
T PRK14618        145 --LPAATVV-AS--PEPGLARRVQAAFSGPSF  171 (328)
T ss_pred             --CCeEEEE-Ee--CCHHHHHHHHHHhCCCcE
Confidence              1222222 22  346788888999888774

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.94  E-value=2.1e-08  Score=99.83  Aligned_cols=163  Identities=17%  Similarity=0.101  Sum_probs=100.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---------------  175 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~---------------  175 (313)
                      +++|+|||+|.||.++|..|.+.      |++|+..+ .+++..+ +...|..+.  ....++++               
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D-~~~~~v~-~l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~   72 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVD-INQHAVD-TINRGEIHI--VEPDLDMVVKTAVEGGYLRATTT   72 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhC------CCEEEEEe-CCHHHHH-HHHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence            48999999999999999999999      99876554 4444333 334443321  11122332               


Q ss_pred             hccCCEEEEcccc----------hhHHHHHHHHHhcCCCCcEEEEecCchh---h----hhhhcccC--CC----CCcc-
Q 021356          176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLL---G----HLQSIGLD--FP----KNIG-  231 (313)
Q Consensus       176 i~~ADvIiLavP~----------~a~~~vi~ei~~~mk~gaiLid~~Gv~l---~----~~~~~~~~--l~----~~i~-  231 (313)
                      +++||+||+|+|.          ..+...++.+.+++++|++|++.+.+..   .    .+.+.+..  .|    .+.+ 
T Consensus        73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f  152 (415)
T PRK11064         73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI  152 (415)
T ss_pred             cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence            3489999999997          3555677889999999999998765422   1    12211111  11    0112 


Q ss_pred             EEEecc--CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChh
Q 021356          232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE  295 (313)
Q Consensus       232 vV~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~  295 (313)
                      .+...|  -.++....+...         .+. +. .. .+++..+.++.+++.++..-+..++++
T Consensus       153 ~v~~~PE~~~~G~~~~~~~~---------~~~-vv-gG-~~~~~~~~~~~ly~~~~~~~~~~~~~~  206 (415)
T PRK11064        153 NIAYCPERVLPGQVMVELIK---------NDR-VI-GG-MTPVCSARASELYKIFLEGECVVTNSR  206 (415)
T ss_pred             EEEECCCccCCCChhhhhcC---------CCE-EE-Ee-CCHHHHHHHHHHHHHhcCCCeeeCCHH
Confidence            355677  445555433222         233 22 22 357889999999999986544444443

>PLN02858 fructose-bisphosphate aldolase

Probab=98.93  E-value=9.9e-09  Score=115.26  Aligned_cols=152  Identities=18%  Similarity=0.172  Sum_probs=101.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|||||+|+||.++|++|.+.      |++|.++++.. ...+...+.|...    ..+..+++++||+|++++|+...
T Consensus       325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~  393 (1378)
T PLN02858        325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYK-PTLVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ  393 (1378)
T ss_pred             CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence            8999999999999999999999      99887776553 3344455566543    45888999999999999996555


Q ss_pred             -HHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC---CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          192 -ADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF---PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       192 -~~vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l---~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                       .+++   ..+.+.+++|++++|++.+.....++....+   +.++.|+- .|-.-++..   -+       .|.-. +.
T Consensus       394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~---A~-------~G~L~-im  461 (1378)
T PLN02858        394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR---AA-------MGTLT-IM  461 (1378)
T ss_pred             HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh---hh-------cCCce-EE
Confidence             4566   2578889999999998876432221100011   14566654 232222221   11       23333 33


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCCc
Q 021356          265 VHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                      ...+  ++..+.++.+++.+|.+.
T Consensus       462 vgG~--~~~~~~~~plL~~lg~~i  483 (1378)
T PLN02858        462 ASGT--DEALKSAGSVLSALSEKL  483 (1378)
T ss_pred             EECC--HHHHHHHHHHHHHHhCcE
Confidence            4443  578999999999999643

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.92  E-value=5.5e-09  Score=99.53  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      .+ |+|+|||+|+||.++|+.|.+.      |++|.++.|...                  .+++++++++|+|++++|+
T Consensus         3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~   57 (308)
T PRK14619          3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM   57 (308)
T ss_pred             CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence            35 8999999999999999999999      999887776531                  1667889999999999999


Q ss_pred             hhHHHHHHHHHhc-CCCCcEEEEec
Q 021356          189 AAQADNYEKIFSC-MKPNSILGLSH  212 (313)
Q Consensus       189 ~a~~~vi~ei~~~-mk~gaiLid~~  212 (313)
                      ..+.++++++.++ ++++++|++++
T Consensus        58 ~~~~~v~~~l~~~~~~~~~ivi~~s   82 (308)
T PRK14619         58 KGVRPVAEQVQALNLPPETIIVTAT   82 (308)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            8777888888764 78899888755

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.90  E-value=1.6e-08  Score=96.80  Aligned_cols=149  Identities=18%  Similarity=0.147  Sum_probs=103.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++||+||+|+||.+++.+|.+.      |+.|++++|.-++ .+.-++.|...    ..++.|++++||+||.++|+..+
T Consensus        36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~  104 (327)
T KOG0409|consen   36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD  104 (327)
T ss_pred             ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence            8999999999999999999999      9999888876443 45556677764    56899999999999999998887


Q ss_pred             HH-HHH---HHHhcCCCCcEE-EEecCchh---hhhhhcccCCCCCccEEEe--ccCCCchhHHHHHHhcccccCCCceE
Q 021356          192 AD-NYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSIGLDFPKNIGVIAV--CPKGMGPSVRRLYVQGKEINGAGINS  261 (313)
Q Consensus       192 ~~-vi~---ei~~~mk~gaiL-id~~Gv~l---~~~~~~~~~l~~~i~vV~v--hPn~pg~~~r~lf~~G~e~~g~G~~~  261 (313)
                      ++ ++-   -++..+++|... +|++-+..   ..+.+  ..-.++..||-.  +=.-.++.      +       |.-.
T Consensus       105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~--~i~~~~~~~vDAPVSGg~~~A~------~-------G~Lt  169 (327)
T KOG0409|consen  105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK--AISNKGGRFVDAPVSGGVKGAE------E-------GTLT  169 (327)
T ss_pred             hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH--HHHhCCCeEEeccccCCchhhh------c-------CeEE
Confidence            65 664   466777888877 78887642   22222  122345566642  11111222      2       3333


Q ss_pred             EEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          262 SFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       262 iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                       |-...|  ++..+.+..+++.+|...+
T Consensus       170 -imagGd--e~~~~~~~~~~~~mGk~~~  194 (327)
T KOG0409|consen  170 -IMAGGD--EALFEAASPVFKLMGKNVV  194 (327)
T ss_pred             -EEecCc--HHHHHHHHHHHHHhcceEE
Confidence             444443  6788889999999995433

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.88  E-value=7.5e-09  Score=89.63  Aligned_cols=95  Identities=23%  Similarity=0.331  Sum_probs=68.7

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee----------cCCCcCCHHhhhccCCEE
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----------ENGTLGDIYETISGSDLV  182 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~----------~~~~~~~~~e~i~~ADvI  182 (313)
                      ||+|||.|++|.++|..|.+.      |++|.++.++. +..+.-.+.+...          .-....++++++++||+|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I   73 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII   73 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred             CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence            799999999999999999999      99888777654 3222222222110          000145888999999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEE-ecCc
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGF  214 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid-~~Gv  214 (313)
                      ++++|.+.+.++++++.++++++++|+. ..|+
T Consensus        74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            9999999999999999999999998774 5576

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02858 fructose-bisphosphate aldolase

Probab=98.88  E-value=2.5e-08  Score=112.01  Aligned_cols=151  Identities=15%  Similarity=0.124  Sum_probs=103.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|||||+|+||..||++|.+.      |++|.++++. .+..+...+.|...    ..++.|++++||+||+++|+...
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~-~~~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~   73 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEIS-TPLMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ   73 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence            7899999999999999999999      9998777665 34445556677664    56899999999999999999887


Q ss_pred             HH-HH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCC--ccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~--i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      .+ ++   +.+.+.+++|++++|++-+.....++....+ .++  +.|+- +|-.=+..   .-++|       . ..+.
T Consensus        74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~---~A~~G-------~-L~im  141 (1378)
T PLN02858         74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMS---DLLNG-------K-LMII  141 (1378)
T ss_pred             HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHH---HHhcC-------C-eEEE
Confidence            65 65   3688889999999998866432221100011 223  55554 33111111   11222       2 3344


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCC
Q 021356          265 VHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ...+  ++..+.++.+++.+|..
T Consensus       142 vGG~--~~~~~~~~p~l~~~g~~  162 (1378)
T PLN02858        142 ASGR--SDAITRAQPFLSAMCQK  162 (1378)
T ss_pred             EcCC--HHHHHHHHHHHHHhcCc
Confidence            4544  57889999999999954

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.87  E-value=3.1e-08  Score=96.01  Aligned_cols=119  Identities=14%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~~~~~~~e~i~~AD  180 (313)
                      ++|+|||.|+||.++|..|.+.      | +++++.+. ++..+.-.+.+         +....  ....+.+++++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD   79 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD   79 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence            7999999999999999999988      8 45455443 23222222222         10000  01346778899999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEE-EEecCchh-------hhhhhcccCCCCCccEEEeccCCCc
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMG  241 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiL-id~~Gv~l-------~~~~~~~~~l~~~i~vV~vhPn~pg  241 (313)
                      +|++++|.+...++++++.++++++++| +...|+..       ..+++   .++....++...|+.+.
T Consensus        80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~  145 (341)
T PRK12439         80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAR  145 (341)
T ss_pred             EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHH
Confidence            9999999999999999999999888754 47778753       23433   33433345677786644

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.85  E-value=8.1e-08  Score=90.18  Aligned_cols=159  Identities=17%  Similarity=0.173  Sum_probs=97.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~e~i~~ADvI  182 (313)
                      |+|+|||.|.||..+|..|.+.      |++|.+..| . +..+...+.|+.....         ...+.+++++.+|+|
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v   72 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV   72 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence            6899999999999999999998      998877766 3 3334444556432110         123455667899999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCC-----ccEEEeccCCCchhHHHHHHhccccc
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKN-----IGVIAVCPKGMGPSVRRLYVQGKEIN  255 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~~~~~~l~~~-----i~vV~vhPn~pg~~~r~lf~~G~e~~  255 (313)
                      ++++|.....++++++.+.++++.+|+ ...|+. ...+..   .++++     +.++......|+...         ..
T Consensus        73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~~v~~g~~~~~~~~~~~g~v~---------~~  140 (305)
T PRK12921         73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRERVLGGVVFISAQLNGDGVVV---------QR  140 (305)
T ss_pred             EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcccEEEEEEEEEEEECCCeEEE---------Ec
Confidence            999999998899999999888888765 556874 333433   34432     112223333333331         00


Q ss_pred             CCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceee
Q 021356          256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA  291 (313)
Q Consensus       256 g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~  291 (313)
                      +.+. ..+........+..+.+.+++...|......
T Consensus       141 ~~~~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~  175 (305)
T PRK12921        141 ADHR-LTFGEIPGQRSERTRAVRDALAGARLEVVLS  175 (305)
T ss_pred             CCCc-EEEcCCCCCcCHHHHHHHHHHHhCCCCceec
Confidence            1222 2243333333455566667777777554333

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.83  E-value=1.3e-08  Score=96.94  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=81.5

Q ss_pred             ccchhhhhhcCCCcccc--cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           87 ANRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        87 ~~~~e~~v~~G~w~f~~--~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +.|+..-+-.|.|...+  ...+|.| ++++|||+|.||.++|+.|+..      |++|++.+|+.. ..+.+.+.|+..
T Consensus       126 a~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~-~~~~~~~~g~~~  197 (287)
T TIGR02853       126 AIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSA-DLARITEMGLIP  197 (287)
T ss_pred             EEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCee
Confidence            34444434444443221  2358899 9999999999999999999999      999888877643 334455556542


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                        ....++++.++++|+||+++|...+.   ++.++.|+++++|+|++..
T Consensus       198 --~~~~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas~  242 (287)
T TIGR02853       198 --FPLNKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLASK  242 (287)
T ss_pred             --ecHHHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCcC
Confidence              11235678899999999999975321   3677889999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.79  E-value=1.4e-07  Score=90.83  Aligned_cols=152  Identities=14%  Similarity=0.194  Sum_probs=109.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD  171 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~~~~~  171 (313)
                      |++|+|||.|.||..+|..+...      |++|.+.+.+.+          +..+...+.|...+.         ....+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~   76 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD   76 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence            58999999999999999998877      899877765521          122233333422111         00122


Q ss_pred             HHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      . ..+++||+||=+++-+...  +++.++-.+.+|++||- .+++..+..+.+   .....-+|++.|+--|.+-|    
T Consensus        77 ~-~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~---~~~rper~iG~HFfNP~~~m----  148 (307)
T COG1250          77 L-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE---ALKRPERFIGLHFFNPVPLM----  148 (307)
T ss_pred             h-hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH---HhCCchhEEEEeccCCCCcc----
Confidence            2 2789999999999977654  38899999999999996 888888766654   22223479999997777663    


Q ss_pred             HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021356          249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~  286 (313)
                                .-.=+.+...++++.++++.+++..+|.
T Consensus       149 ----------~LVEvI~g~~T~~e~~~~~~~~~~~igK  176 (307)
T COG1250         149 ----------PLVEVIRGEKTSDETVERVVEFAKKIGK  176 (307)
T ss_pred             ----------eeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence                      1122567888999999999999999994

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.78  E-value=7.1e-09  Score=87.88  Aligned_cols=120  Identities=18%  Similarity=0.092  Sum_probs=77.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++++ ++|+|||.|.||.++++.|++.      | .+|.+..++.++..+.+.+.+.........+.+++++++|+|+++
T Consensus        16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT   88 (155)
T ss_pred             CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence            4667 9999999999999999999987      6 456666554333333344434210000134677789999999999


Q ss_pred             ccchhH-HH--HHHHHHhcCCCCcEEEEecCchh--hhhhhcccCCCCCccEEEeccC
Q 021356          186 ISDAAQ-AD--NYEKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFPKNIGVIAVCPK  238 (313)
Q Consensus       186 vP~~a~-~~--vi~ei~~~mk~gaiLid~~Gv~l--~~~~~~~~~l~~~i~vV~vhPn  238 (313)
                      +|+..+ .+  .+.  ...++++.+++|++....  ...+.   .-..+..+|..||.
T Consensus        89 ~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~~  141 (155)
T cd01065          89 TPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLEM  141 (155)
T ss_pred             cCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHHH
Confidence            999886 21  121  123689999999876532  11111   11236778888873

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.78  E-value=2.9e-08  Score=100.47  Aligned_cols=93  Identities=23%  Similarity=0.273  Sum_probs=75.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..|.| ++++|||+|.||..+|+.++.+      |++|++..+.. .....+...|+.     ..+++++++++|+|+++
T Consensus       250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp-~~a~~A~~~G~~-----~~~leell~~ADIVI~a  316 (476)
T PTZ00075        250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDP-ICALQAAMEGYQ-----VVTLEDVVETADIFVTA  316 (476)
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc-hhHHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence            47899 9999999999999999999999      99987665543 223345556775     34789999999999999


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                      +.   ...+++ +.+..||||++|++++-.
T Consensus       317 tG---t~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        317 TG---NKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CC---cccccCHHHHhccCCCcEEEEcCCC
Confidence            74   345776 889999999999987655

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.76  E-value=2.9e-08  Score=87.50  Aligned_cols=94  Identities=23%  Similarity=0.295  Sum_probs=69.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..|.| |++.|+|+|.+|..+|+.|+..      |.+|++.... +-..-+|...||.     ..+++|+++++|+|+-+
T Consensus        19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen   19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA   85 (162)
T ss_dssp             S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred             eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence            46789 9999999999999999999999      9998877654 4445577789998     45899999999999999


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~  215 (313)
                      +-...   ++. +.+..||+|++|..++.+.
T Consensus        86 TG~~~---vi~~e~~~~mkdgail~n~Gh~d  113 (162)
T PF00670_consen   86 TGNKD---VITGEHFRQMKDGAILANAGHFD  113 (162)
T ss_dssp             SSSSS---SB-HHHHHHS-TTEEEEESSSST
T ss_pred             CCCcc---ccCHHHHHHhcCCeEEeccCcCc
Confidence            88754   343 6778899999999998874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.75  E-value=1.7e-07  Score=99.38  Aligned_cols=156  Identities=10%  Similarity=0.086  Sum_probs=113.8

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT  168 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~  168 (313)
                      ..|++|+|||.|.||..+|..+...      |++|++.+... +..+.           ..+.|...+.         ..
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~  383 (715)
T PRK11730        311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQ-KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP  383 (715)
T ss_pred             cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence            4568999999999999999999998      99987776543 22221           1222221100         01


Q ss_pred             cCCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021356          169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR  245 (313)
Q Consensus       169 ~~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r  245 (313)
                      ..+. +.+++||+||=++|.+...+  ++.++-+.+++++||. .++++.+..+..   .+...-+|++.|+-.|.+.+ 
T Consensus       384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~-  458 (715)
T PRK11730        384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM-  458 (715)
T ss_pred             eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCccccc-
Confidence            2344 55799999999999887653  8999999999999986 788887766665   33334589999998777763 


Q ss_pred             HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      .             -.=|.++..++++.++.+.++++.+|..-+
T Consensus       459 ~-------------lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv  489 (715)
T PRK11730        459 P-------------LVEVIRGEKTSDETIATVVAYASKMGKTPI  489 (715)
T ss_pred             c-------------eEEeeCCCCCCHHHHHHHHHHHHHhCCceE
Confidence            1             122678889999999999999999996544

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.75  E-value=1.8e-07  Score=89.52  Aligned_cols=103  Identities=25%  Similarity=0.291  Sum_probs=73.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C----------CcCCHHhhhcc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G----------TLGDIYETISG  178 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~----------~~~~~~e~i~~  178 (313)
                      +|+|+|||.|.||.++|..|.+.      |++|.+..|..  ..+...+.|....+  +          ...+..+.++.
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT   73 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence            47899999999999999999999      99887776642  22333445543110  0          01122356789


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEEE-ecCch-hhhhhh
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFL-LGHLQS  221 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid-~~Gv~-l~~~~~  221 (313)
                      +|+|++++|.....++++++.+.++++++|++ ..|+. ...++.
T Consensus        74 ~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~  118 (341)
T PRK08229         74 ADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA  118 (341)
T ss_pred             CCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence            99999999999888899999999999998774 45764 334443

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.73  E-value=1.8e-07  Score=99.16  Aligned_cols=156  Identities=10%  Similarity=0.084  Sum_probs=113.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT  168 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~  168 (313)
                      ..|++|+|||.|.||..+|..+...      |++|++.+... +..+.           ..+.|...+.         ..
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~-~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  383 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQ-HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP  383 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence            3568999999999999999999999      99987776542 22221           1122211000         01


Q ss_pred             cCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021356          169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR  245 (313)
Q Consensus       169 ~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r  245 (313)
                      ..+. +.+++||+||=++|.+...  +++.++-+.++|++||. .+++..+..+..   .....-+|++.|+-.|.+.+ 
T Consensus       384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~-  458 (714)
T TIGR02437       384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM-  458 (714)
T ss_pred             eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccC-
Confidence            2344 4579999999999988765  39999999999999986 778887777765   33334589999997777763 


Q ss_pred             HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      .+             .=|.++..++++.++.+.+++..+|..-+
T Consensus       459 ~l-------------vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv  489 (714)
T TIGR02437       459 PL-------------VEVIRGEKSSDETIATVVAYASKMGKTPI  489 (714)
T ss_pred             ce-------------EeecCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            11             11578889999999999999999995544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.73  E-value=4.8e-07  Score=84.67  Aligned_cols=96  Identities=19%  Similarity=0.246  Sum_probs=71.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee-cC------CCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-EN------GTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~------~~~~~~~e~i~~ADvIiL  184 (313)
                      |+|+|||.|.||..+|..|.+.      |++|.+..+.. +..+...+.|+.. ++      ....+..++ +.+|+|++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil   72 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRG-AHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL   72 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCh-HHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence            5899999999999999999998      99887777643 3334444456521 00      012344554 89999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEE-EecCch
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILG-LSHGFL  215 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~  215 (313)
                      ++|.....++++++.+.+.++++|+ ...|+.
T Consensus        73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~  104 (304)
T PRK06522         73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG  104 (304)
T ss_pred             ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            9999998889999999998886554 667875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.72  E-value=1.7e-07  Score=99.70  Aligned_cols=155  Identities=11%  Similarity=0.090  Sum_probs=112.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL  169 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~  169 (313)
                      .|++|+|||.|.||..+|..+...      |++|++.+... +..+.           ..+.|...+.         ...
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~-~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~  406 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATP-AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT  406 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence            458999999999999999999998      99987765442 22211           1222211000         012


Q ss_pred             CCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021356          170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      .+. +.+++||+||=++|.+...+  ++.++-+.++|++||. .+++..+..+..   .....-+|++.|+-.|.+.+ .
T Consensus       407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m-~  481 (737)
T TIGR02441       407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKM-Q  481 (737)
T ss_pred             CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccC-c
Confidence            344 46799999999999887654  8999999999999986 788888777765   23334589999997777763 1


Q ss_pred             HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                   -.=+.++..++++.++.+.++++.+|..-+
T Consensus       482 -------------LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv  511 (737)
T TIGR02441       482 -------------LLEIITHDGTSKDTLASAVAVGLKQGKVVI  511 (737)
T ss_pred             -------------eEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence                         122677889999999999999999996543

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.71  E-value=2.6e-07  Score=97.73  Aligned_cols=155  Identities=12%  Similarity=0.120  Sum_probs=111.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021356          110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT  168 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~  168 (313)
                      .|++|+|||.|.||..+|..+. ..      |++|++.+... +..+.+           .+.|...+.         ..
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  375 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINP-QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG  375 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence            4589999999999999999876 57      99987766542 222221           122211000         01


Q ss_pred             cCCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021356          169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR  245 (313)
Q Consensus       169 ~~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r  245 (313)
                      ..+. +.+++||+||=++|.+...+  ++.++-+.+++++||. .+++..+..+.+   .+...-+|++.|+-.|.+.+ 
T Consensus       376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~-  450 (699)
T TIGR02440       376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKM-  450 (699)
T ss_pred             eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccC-
Confidence            2344 56899999999999887643  8999999999999986 778887777765   22334589999997777653 


Q ss_pred             HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                   .-.=|.++..++++.++.+.++++.+|..-+
T Consensus       451 -------------~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv  481 (699)
T TIGR02440       451 -------------PLVEVIPHAGTSEQTIATTVALAKKQGKTPI  481 (699)
T ss_pred             -------------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence                         1122677888999999999999999996544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.68  E-value=4.5e-07  Score=96.08  Aligned_cols=155  Identities=12%  Similarity=0.141  Sum_probs=112.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021356          110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT  168 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~  168 (313)
                      .|++|+|||.|.||..+|..+. ..      |++|++.+.. ++..+.+           .+.|...+.         ..
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~  380 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDIN-PQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG  380 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence            4689999999999999999887 77      9998776654 2222221           122211000         01


Q ss_pred             cCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021356          169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR  245 (313)
Q Consensus       169 ~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r  245 (313)
                      ..+. +.+++||+||=++|.+...  +++.++-++++|++||. .+++..+..+.+   .+...-+|++.|+-.|.+.+ 
T Consensus       381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~-  455 (708)
T PRK11154        381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM-  455 (708)
T ss_pred             eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC-
Confidence            2344 5679999999999988764  38999999999999986 778887777765   23334589999997777653 


Q ss_pred             HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                   .-.=|.++..++++.++.+.++++.+|..-+
T Consensus       456 -------------~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv  486 (708)
T PRK11154        456 -------------PLVEVIPHAKTSAETIATTVALAKKQGKTPI  486 (708)
T ss_pred             -------------ceEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence                         1122678899999999999999999997544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.64  E-value=4.7e-07  Score=86.63  Aligned_cols=96  Identities=23%  Similarity=0.298  Sum_probs=68.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--Cce------ec-C-CCcCCHHhhh-ccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EE-N-GTLGDIYETI-SGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~-~-~~~~~~~e~i-~~AD  180 (313)
                      |+|+|||.|.||.++|..|.+.      |.+|.+..|+. +..+.-.+.  +..      .. + ....+.++.+ ..+|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D   73 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNH-TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT   73 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCH-HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence            5799999999999999999999      99887666643 222222211  110      00 0 0123556666 5899


Q ss_pred             EEEEcccchhHHHHHHHHHh-cCCCCc-EEEEecCc
Q 021356          181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGF  214 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~-~mk~ga-iLid~~Gv  214 (313)
                      +||+++|++...++++++.+ +++++. +|+...|+
T Consensus        74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence            99999999999999999998 888776 45577787

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.61  E-value=8e-07  Score=88.90  Aligned_cols=92  Identities=23%  Similarity=0.274  Sum_probs=74.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .+.| ++++|+|+|.+|..+++.++..      |.+|++.. .++.....|.+.|+.     ..+.+++++++|+||.++
T Consensus       199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d-~d~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~at  265 (413)
T cd00401         199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTE-VDPICALQAAMEGYE-----VMTMEEAVKEGDIFVTTT  265 (413)
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEE-CChhhHHHHHhcCCE-----EccHHHHHcCCCEEEECC
Confidence            4789 9999999999999999999999      99877654 444556788888985     236678899999999987


Q ss_pred             cchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                      ...   .+++ +.+..||+|.+|+.++.+
T Consensus       266 G~~---~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         266 GNK---DIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence            643   4566 568899999999877654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=6.7e-07  Score=83.63  Aligned_cols=146  Identities=21%  Similarity=0.199  Sum_probs=108.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh---ccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i---~~ADvIiLavP~  188 (313)
                      |+||.||+|.||..+.++|.+.      |+++ ++++.++...+.+...|...    ..+++|++   ...-+|-|.+|-
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~------ghdv-V~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa   69 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDG------GHDV-VGYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA   69 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhC------CCeE-EEEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence            6899999999999999999999      9985 67777788888888899664    44666644   567899999998


Q ss_pred             hhHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          189 AAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       189 ~a~~-~vi~ei~~~mk~gaiLid~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ..++ ++++++.+.|.+|.+|||-+-..    +...+.   ...++++|+-+=-++=.             .|.-..+.+
T Consensus        70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~---l~~kgi~flD~GTSGG~-------------~G~~~G~~l  133 (300)
T COG1023          70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL---LAEKGIHFLDVGTSGGV-------------WGAERGYCL  133 (300)
T ss_pred             CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH---HHhcCCeEEeccCCCCc-------------hhhhcCceE
Confidence            8665 49999999999999999977542    323222   34568999875443211             111223446


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~  286 (313)
                      .+..+  +++++.++-+|+++--
T Consensus       134 MiGG~--~~a~~~~~pif~~lA~  154 (300)
T COG1023         134 MIGGD--EEAVERLEPIFKALAP  154 (300)
T ss_pred             EecCc--HHHHHHHHHHHHhhCc
Confidence            66664  7999999999998753

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.57  E-value=2.8e-06  Score=81.10  Aligned_cols=157  Identities=20%  Similarity=0.179  Sum_probs=98.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------~~~~~e~i~~ADvI  182 (313)
                      |+|+|||.|.||..+|..|.+.      |++|.+..|...   +.-.+.|+...  ++.       ..+..+.+..+|+|
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   76 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV   76 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence            7999999999999999999999      999888877532   23334554321  010       01222346789999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEE------EeccCCCchhHHHHHHhcccc
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI  254 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l-~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~  254 (313)
                      ||++|-.+..++++.+.+.++++.+|+ ..-|+.. ..+..   .+|+. +++      +.....|+...         .
T Consensus        77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~  143 (313)
T PRK06249         77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H  143 (313)
T ss_pred             EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence            999999888888999999898887665 5567743 33433   34443 333      23344444331         1


Q ss_pred             cCCCceEEEEeccCCC-----HHHHHHHHHHHHHcCCCceee
Q 021356          255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFA  291 (313)
Q Consensus       255 ~g~G~~~iitp~~d~~-----~ea~e~a~~L~~alG~~~~~~  291 (313)
                      .|.|... |.+....+     .+.++.+.++++..|......
T Consensus       144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~  184 (313)
T PRK06249        144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDSQAM  184 (313)
T ss_pred             CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCceeC
Confidence            2234333 44433222     456666778888888664443

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.52  E-value=6.4e-07  Score=89.37  Aligned_cols=92  Identities=23%  Similarity=0.233  Sum_probs=74.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .+.| ++++|||+|.+|..+|+.++..      |++|++..+.. .....+...|+.     ..+++++++++|+||.++
T Consensus       192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp-~r~~~A~~~G~~-----v~~leeal~~aDVVItaT  258 (406)
T TIGR00936       192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDP-IRALEAAMDGFR-----VMTMEEAAKIGDIFITAT  258 (406)
T ss_pred             CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCCh-hhHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence            4789 9999999999999999999999      99987765443 334566677875     346788999999999887


Q ss_pred             cchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                      ..   ..+++ +.+..||+|++|+.++.+
T Consensus       259 G~---~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       259 GN---KDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence            63   45676 688999999999987764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.51  E-value=5.6e-07  Score=85.98  Aligned_cols=95  Identities=22%  Similarity=0.349  Sum_probs=73.9

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..+.| ++++|||+|.+|..+++.|+..      |.+|.+..++. ...+.+...|+...  ...++.+.++++|+||.+
T Consensus       148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~-~~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKS-AHLARITEMGLSPF--HLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence            46789 9999999999999999999999      99887776663 33556667776521  123567889999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+..   +-++.++.|+++++|+|++.
T Consensus       218 ~p~~~---i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        218 IPALV---LTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CChhh---hhHHHHHcCCCCcEEEEEcc
Confidence            98632   22467788999999998764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.50  E-value=2.9e-06  Score=85.05  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--c----------CCCcCCHHhhhccC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E----------NGTLGDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~----------~~~~~~~~e~i~~A  179 (313)
                      |+|||||+|.||..+|.+|. .      +++|+ +++.++...+... .|...  |          .....+..+.+++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~------~~~V~-g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a   77 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K------SRQVV-GFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC   77 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c------CCEEE-EEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence            89999999999999999964 3      66764 5555444443332 44320  0          00123444678999


Q ss_pred             CEEEEcccchh-------HHHH---HHHHHhcCCCCcEEEEecCc
Q 021356          180 DLVLLLISDAA-------QADN---YEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       180 DvIiLavP~~a-------~~~v---i~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+||+|+|...       ...+   .+.+.+++++|++|++.+-+
T Consensus        78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv  122 (425)
T PRK15182         78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV  122 (425)
T ss_pred             CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            99999999551       1233   34788999999999987654

>PLN02494 adenosylhomocysteinase

Probab=98.48  E-value=8e-07  Score=90.05  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .+.| ++++|||+|.+|..+|+.++.+      |++|++..+. +.....+...|+..     .+++++++++|+|+.++
T Consensus       251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~d-p~r~~eA~~~G~~v-----v~leEal~~ADVVI~tT  317 (477)
T PLN02494        251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEID-PICALQALMEGYQV-----LTLEDVVSEADIFVTTT  317 (477)
T ss_pred             ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-chhhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence            4789 9999999999999999999999      9987765544 33334667778762     37889999999999866


Q ss_pred             cchhHHHHH-HHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNY-EKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi-~ei~~~mk~gaiLid~~Gv  214 (313)
                      ...   .++ .+.++.||+|++|+.++.+
T Consensus       318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        318 GNK---DIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence            543   444 5788999999999987654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.46  E-value=8.7e-07  Score=88.93  Aligned_cols=93  Identities=24%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .+.| ++++|||+|.+|..+|+.++..      |.+|++..+...+ ...+...|+.     ..+++++++++|+||.++
T Consensus       209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT  275 (425)
T PRK05476        209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT  275 (425)
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence            4789 9999999999999999999999      9998776654333 3455566775     347889999999999987


Q ss_pred             cchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv~  215 (313)
                      ..   .++++ +.+..||+|++++.++.+.
T Consensus       276 G~---~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        276 GN---KDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            54   34676 7889999999999887653

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.41  E-value=2.3e-06  Score=86.66  Aligned_cols=139  Identities=15%  Similarity=0.080  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhcc---CCEEEEcccchhHHH-
Q 021356          122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD-  193 (313)
Q Consensus       122 mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~~---ADvIiLavP~~a~~~-  193 (313)
                      ||..||++|.+.      |++|.+++|..++..+...+.    |++.    ..+++|+++.   +|+|++++|....++ 
T Consensus         1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            899999999999      999988877655444433322    3543    5688888874   899999999987765 


Q ss_pred             HHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021356          194 NYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD  270 (313)
Q Consensus       194 vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~  270 (313)
                      +++.+.+.|.+|.+|+|.+-..   ......  ..-.+++.||..-=.+ +..   .=+       .|. + |.+..+  
T Consensus        71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvdapVSG-G~~---gA~-------~G~-s-iM~GG~--  133 (459)
T PRK09287         71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIGMGVSG-GEE---GAL-------HGP-S-IMPGGQ--  133 (459)
T ss_pred             HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEecCCCC-CHH---HHh-------cCC-E-EEEeCC--
Confidence            8899999999999999987432   111111  1213467777532222 111   111       243 4 667776  


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 021356          271 GRATNVALGWSVALGSP  287 (313)
Q Consensus       271 ~ea~e~a~~L~~alG~~  287 (313)
                      +++.+.++-+++.+|.+
T Consensus       134 ~~a~~~~~piL~~ia~~  150 (459)
T PRK09287        134 KEAYELVAPILEKIAAK  150 (459)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            78999999999999964

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.40  E-value=1.2e-06  Score=86.33  Aligned_cols=98  Identities=18%  Similarity=0.280  Sum_probs=70.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC-------cEEEEEecCCcc---cHHHHHH-C--------Cceec-C-CCcC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---SFAEARA-A--------GFTEE-N-GTLG  170 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-------~~Vivg~r~~~~---s~~~A~~-~--------G~~~~-~-~~~~  170 (313)
                      ++|+|||.|++|.++|..|.+.      |       ++|.++.|+..-   ....... .        |+... + ....
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts   85 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS   85 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence            7999999999999999999887      6       677777665421   1111111 1        11100 0 0135


Q ss_pred             CHHhhhccCCEEEEcccchhHHHHHHHHHh--cCCCCcEEE-EecCch
Q 021356          171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSILG-LSHGFL  215 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~~vi~ei~~--~mk~gaiLi-d~~Gv~  215 (313)
                      ++++++++||+|++++|++...++++++.+  +++++++++ .+.|+.
T Consensus        86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe  133 (365)
T PTZ00345         86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII  133 (365)
T ss_pred             CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence            778899999999999999999999999998  888887554 777874

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.40  E-value=1.8e-06  Score=84.39  Aligned_cols=98  Identities=19%  Similarity=0.299  Sum_probs=71.0

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCC--------cEEEEEecCC---cccHHHHHH---------CCceecC--CCcC
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG  170 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~~--~~~~  170 (313)
                      +|+|||.|+.|.++|..|.+.      |        ++|.++.+..   .+.......         .|+...+  ....
T Consensus         1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~   74 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP   74 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence            589999999999999999887      7        7888776631   111111111         1221000  0135


Q ss_pred             CHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCchh
Q 021356          171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL  216 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l  216 (313)
                      ++++++++||+|++++|++.+.++++++.++++++++++ .+.|+..
T Consensus        75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~  121 (342)
T TIGR03376        75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV  121 (342)
T ss_pred             CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence            788999999999999999999999999999999888654 6777743

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.37  E-value=4.7e-06  Score=81.01  Aligned_cols=148  Identities=21%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH--------CCceec--CCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AGFTEE--NGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--------~G~~~~--~~~~~~~~e~i~~ADv  181 (313)
                      ++|+|||.|+-|.++|+.|.+.      |++|.++.|+.+ ..+.-.+        .|+...  -....|+++++++||+
T Consensus         2 ~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~   74 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI   74 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence            7999999999999999999999      998887776422 1111100        021110  0124589999999999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEE-EecCch------h-hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhccc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------L-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE  253 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~------l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e  253 (313)
                      |++++|-+.+.++++++.++++++++++ .+-|+.      + ..+++   .+|.+.-.+-+=||.     .+.-.+   
T Consensus        75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~-----A~EVa~---  143 (329)
T COG0240          75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSF-----AKEVAQ---  143 (329)
T ss_pred             EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccH-----HHHHhc---
Confidence            9999999999999999988999998876 556762      2 33333   445443334444533     222222   


Q ss_pred             ccCCCceEEEEeccCCCHHHHHHHHHHHH
Q 021356          254 INGAGINSSFAVHQDVDGRATNVALGWSV  282 (313)
Q Consensus       254 ~~g~G~~~iitp~~d~~~ea~e~a~~L~~  282 (313)
                          |.++.++.... +.+..+.+..+|.
T Consensus       144 ----g~pta~~vas~-d~~~a~~v~~~f~  167 (329)
T COG0240         144 ----GLPTAVVVASN-DQEAAEKVQALFS  167 (329)
T ss_pred             ----CCCcEEEEecC-CHHHHHHHHHHhC
Confidence                45665666543 3455555555444

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.37  E-value=1.1e-06  Score=84.46  Aligned_cols=76  Identities=18%  Similarity=0.191  Sum_probs=62.0

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| |+|+|||.| .||..+|..|.+.      |..|.+..++.                   .++.+++++||+||+
T Consensus       155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs  208 (301)
T PRK14194        155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA  208 (301)
T ss_pred             CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence            48999 999999996 9999999999999      99887765432                   257789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++....   +++.  .+|+|++|+|++
T Consensus       209 avg~~~~---v~~~--~ik~GaiVIDvg  231 (301)
T PRK14194        209 AVGRPRL---IDAD--WLKPGAVVIDVG  231 (301)
T ss_pred             ecCChhc---ccHh--hccCCcEEEEec
Confidence            9997643   3321  289999999985

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.35  E-value=1.3e-05  Score=71.85  Aligned_cols=95  Identities=22%  Similarity=0.319  Sum_probs=59.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--cC---------------CCcCCHHh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--EN---------------GTLGDIYE  174 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~---------------~~~~~~~e  174 (313)
                      |+|+|||+|-+|..+|..|.+.      |++| ++.+.+++..+. ...|...  |.               ....+..+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~------G~~V-~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK------GHQV-IGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE   72 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT------TSEE-EEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhC------CCEE-EEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence            7999999999999999999999      9986 566655443322 2233110  00               01346778


Q ss_pred             hhccCCEEEEcccch----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       175 ~i~~ADvIiLavP~~----------a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++++||++++|+|..          .....++.+.++++++++|+.-+-+
T Consensus        73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv  122 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV  122 (185)
T ss_dssp             HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred             hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence            899999999999722          2345677899999999998865533

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.33  E-value=7.4e-06  Score=81.25  Aligned_cols=92  Identities=12%  Similarity=0.104  Sum_probs=61.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET  175 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~~~~~~~e~  175 (313)
                      |+|+|||+|.||..+|..+ +.      |++|+.. +.+++..+...+                .+...  ....+..++
T Consensus         1 mkI~VIGlGyvGl~~A~~l-A~------G~~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~   70 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLI-AQ------NHEVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA   70 (388)
T ss_pred             CEEEEECCCHHHHHHHHHH-Hh------CCcEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence            5899999999999999655 46      8887544 444443333322                11110  012245678


Q ss_pred             hccCCEEEEcccch-----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       176 i~~ADvIiLavP~~-----------a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +++||+|++++|..           ...++++.+.. +++|++|++.+-+
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv  119 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV  119 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence            89999999999955           33456677777 6999999876655

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.31  E-value=3.7e-06  Score=79.45  Aligned_cols=92  Identities=15%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|||||+|.||..+++.|.+..    .++++....+++.+ ..+.+.+.|...   ...+.+++++++|+|++++|+..
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~   79 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV   79 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence            79999999999999999997620    16676544454433 334444555321   24589999999999999999998


Q ss_pred             HHHHHHHHHhcCCCCc-EEEEecC
Q 021356          191 QADNYEKIFSCMKPNS-ILGLSHG  213 (313)
Q Consensus       191 ~~~vi~ei~~~mk~ga-iLid~~G  213 (313)
                      +.++..+.+.   .|+ +++...|
T Consensus        80 h~e~~~~aL~---aGk~Vi~~s~g  100 (271)
T PRK13302         80 LRAIVEPVLA---AGKKAIVLSVG  100 (271)
T ss_pred             HHHHHHHHHH---cCCcEEEecch
Confidence            8887766553   454 4444444

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.31  E-value=8.5e-06  Score=82.86  Aligned_cols=169  Identities=15%  Similarity=0.080  Sum_probs=95.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--c-----------C---CCcCCHHh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E-----------N---GTLGDIYE  174 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~-----------~---~~~~~~~e  174 (313)
                      +|+|+|||+|.+|..+|..|.+.    |.|++|+ +.+.+++..+.- +.|...  +           +   ....+..+
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l-~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~   74 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAW-NSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK   74 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHH-HcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence            48999999999999999999876    1136664 445444333221 111100  0           0   01235677


Q ss_pred             hhccCCEEEEccc-ch--------------hHHHHHHHHHhcCCCCcEEEEec----CchhhhhhhcccCCCCCcc-EEE
Q 021356          175 TISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSIGLDFPKNIG-VIA  234 (313)
Q Consensus       175 ~i~~ADvIiLavP-~~--------------a~~~vi~ei~~~mk~gaiLid~~----Gv~l~~~~~~~~~l~~~i~-vV~  234 (313)
                      ++++||+||+|+| |.              .+...++++.++++++++|+.-+    |+. ..+...-..-..+.+ .|.
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt-~~~~~~l~~~~~g~~f~v~  153 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEKILTHNSKGINFQIL  153 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH-HHHHHHHHhhCCCCCeEEE
Confidence            8999999999986 22              23346678999999999887544    332 111110000011233 466


Q ss_pred             ecc--CCCchhHHHHHHhcccccCCCceEEE-Eec-cCCCHHHHHHHHHHHHHcC-CCceeecChh
Q 021356          235 VCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVH-QDVDGRATNVALGWSVALG-SPFTFATTLE  295 (313)
Q Consensus       235 vhP--n~pg~~~r~lf~~G~e~~g~G~~~ii-tp~-~d~~~ea~e~a~~L~~alG-~~~~~~tT~~  295 (313)
                      ..|  ..||..+++++.         ..-++ .-. .+..+++.+.++++...+- ...+..++++
T Consensus       154 ~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~  210 (473)
T PLN02353        154 SNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW  210 (473)
T ss_pred             ECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH
Confidence            677  345555544443         34433 222 2222567888888888774 2345556665

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.31  E-value=4.4e-06  Score=78.48  Aligned_cols=82  Identities=17%  Similarity=0.164  Sum_probs=58.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      +++|||||+|.||..+++.+.+.    +.+++++...+++.+..+ .+...|...    ..++++++.++|+|++++|+.
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~   72 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN   72 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence            47999999999999999999875    013555544555443332 333344432    458889889999999999999


Q ss_pred             hHHHHHHHHHh
Q 021356          190 AQADNYEKIFS  200 (313)
Q Consensus       190 a~~~vi~ei~~  200 (313)
                      .+.++..+.+.
T Consensus        73 ~~~~~~~~al~   83 (265)
T PRK13304         73 AVEEVVPKSLE   83 (265)
T ss_pred             HHHHHHHHHHH
Confidence            88887776654

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=1.1e-05  Score=80.08  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=105.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC----ceecCCCcCCHHh---hhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYE---TISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e---~i~~ADvIiL  184 (313)
                      ..||+||+|.||..+|+|+.+.      |+.|.+++|..+++.+.-++.+    ++.    ..+++|   .++.---|+|
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence            5799999999999999999999      9999999998777665544443    221    345665   5577888999


Q ss_pred             cccchh-HHHHHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021356          185 LISDAA-QADNYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       185 avP~~a-~~~vi~ei~~~mk~gaiLid~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      .+.-.. +..++++++++|.+|.||+|-+-.    ++...++   .-.+++.||+.==++           |.|.-=.| 
T Consensus        74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G-  138 (473)
T COG0362          74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG-  138 (473)
T ss_pred             EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence            988754 445999999999999999998754    2333332   335688999753322           11000011 


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          260 NSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       260 ~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      +. |.|..+  .++.+.+.-+++++-++
T Consensus       139 PS-iMpGG~--~eay~~v~pil~~IaAk  163 (473)
T COG0362         139 PS-IMPGGQ--KEAYELVAPILTKIAAK  163 (473)
T ss_pred             CC-cCCCCC--HHHHHHHHHHHHHHHhh
Confidence            22 567665  78999999999988754

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.18  E-value=6.9e-06  Score=78.81  Aligned_cols=97  Identities=19%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+.| ++|+|||.|.||..+++.|+..      |. +|++.++..++..+.+.+.|....  ...+..+.+.++|+||.+
T Consensus       175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA  245 (311)
T ss_pred             CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence            3789 9999999999999999999986      54 666676654445566777665321  123466788999999999


Q ss_pred             ccchhHHHHHHHHHhcC-CCCcEEEEec
Q 021356          186 ISDAAQADNYEKIFSCM-KPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~m-k~gaiLid~~  212 (313)
                      ++.....+++++..... +++.+++|.+
T Consensus       246 t~~~~~~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         246 TGAPHYAKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence            99776645555544332 3567788876

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.17  E-value=6.1e-05  Score=72.67  Aligned_cols=145  Identities=12%  Similarity=0.050  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHhchhhhcCCcEEEEEecCCcc------cH-----------HHHHHCCceecC---------CCcC--CHH
Q 021356          122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SF-----------AEARAAGFTEEN---------GTLG--DIY  173 (313)
Q Consensus       122 mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~------s~-----------~~A~~~G~~~~~---------~~~~--~~~  173 (313)
                      ||..+|..+...      |++|++.+...+.      ..           +.+.+.|...+.         ....  +..
T Consensus         1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   74 (314)
T PRK08269          1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA   74 (314)
T ss_pred             CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence            789999999888      9998877765421      11           112233322100         0011  255


Q ss_pred             hhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHh
Q 021356          174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ  250 (313)
Q Consensus       174 e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~  250 (313)
                      +++++||+||-++|.+...+  ++.++.+.++|++||. .+++..+..+..   ..+..-++++.|+--|.+.+      
T Consensus        75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------  145 (314)
T PRK08269         75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------  145 (314)
T ss_pred             HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence            78999999999999888754  7889999999999986 566666666654   22333479999996666553      


Q ss_pred             cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                              .-.=+.+...++++.++.+..+++.+|..-+
T Consensus       146 --------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v  176 (314)
T PRK08269        146 --------PLVEVSPSDATDPAVVDRLAALLERIGKVPV  176 (314)
T ss_pred             --------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence                    1122567778899999999999999996533

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.17  E-value=7.5e-06  Score=67.46  Aligned_cols=98  Identities=12%  Similarity=0.037  Sum_probs=60.9

Q ss_pred             EEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccHHHHHHCC-ceecCCCcCCHHhh-hccCCEEEEcccc
Q 021356          113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD  188 (313)
Q Consensus       113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~~G-~~~~~~~~~~~~e~-i~~ADvIiLavP~  188 (313)
                      +|+||| .|.+|..++..+.+.     .++++..... +.+.....+...+ +........+.++. ..++|+|++++|+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~   75 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH   75 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence            589999 599999999998884     1555433322 2111111122222 11000000111111 2589999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ..+.+++..+...+++|++|+|++|..
T Consensus        76 ~~~~~~~~~~~~~~~~g~~viD~s~~~  102 (122)
T smart00859       76 GVSKEIAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEECCccc
Confidence            999998876667789999999999873

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.17  E-value=6e-06  Score=79.35  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +++| ++|+||| .|.||..+|..|.+.      |+.|.++..+.                   .++++++++||+|+.+
T Consensus       155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa  208 (296)
T PRK14188        155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA  208 (296)
T ss_pred             CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence            7899 9999999 999999999999998      99887764221                   1457889999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++....   +++.  ++++|++|+|++-
T Consensus       209 vg~~~~---v~~~--~lk~GavVIDvGi  231 (296)
T PRK14188        209 VGRPEM---VKGD--WIKPGATVIDVGI  231 (296)
T ss_pred             cCChhh---cchh--eecCCCEEEEcCC
Confidence            998653   3322  2899999999863

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.10  E-value=2.3e-05  Score=63.49  Aligned_cols=82  Identities=23%  Similarity=0.278  Sum_probs=62.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|||||+|.+|......+++.    ..+.++....+++++.. ..+.+.|+..    ..+.+++++  +.|+|++++|+
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~   72 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP   72 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred             CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence            4799999999999999888876    12456654555554443 3456678763    678999998  79999999999


Q ss_pred             hhHHHHHHHHHhc
Q 021356          189 AAQADNYEKIFSC  201 (313)
Q Consensus       189 ~a~~~vi~ei~~~  201 (313)
                      ..+.+++.+.+..
T Consensus        73 ~~h~~~~~~~l~~   85 (120)
T PF01408_consen   73 SSHAEIAKKALEA   85 (120)
T ss_dssp             GGHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHc
Confidence            9999888876654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.08  E-value=4.6e-05  Score=72.80  Aligned_cols=97  Identities=22%  Similarity=0.249  Sum_probs=68.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceec-CCC--c----CCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~--~----~~~~e~i~~ADvIi  183 (313)
                      |+|+|||.|.||+-+|..|.+.      |.+|.+..|..+ ..+.-+ +.|+... ++.  .    ....+.....|+||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi   75 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL   75 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence            7899999999999999999998      988877776532 222222 2344311 110  0    01112245789999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEE-EecCch
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL  215 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~  215 (313)
                      ++++-....+.++.+.+++.+++.|+ .--|+.
T Consensus        76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~  108 (305)
T PRK05708         76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLG  108 (305)
T ss_pred             EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence            99999988889999999999988765 667875

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.05  E-value=0.00015  Score=69.91  Aligned_cols=156  Identities=18%  Similarity=0.220  Sum_probs=97.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC--------cCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~--------~~~~~e~i~~ADvIi  183 (313)
                      |+|.|+|.|.||.-++..|.+.      |.+|.+..|.. . .+.-++.|+...+..        .....+....+|+||
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~-~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi   72 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR-R-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI   72 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH-H-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence            6899999999999999999999      86666666543 2 444455575432211        112235667899999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEEecc-----CCCchhHHHHHHhcccccC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQGKEING  256 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l-~~~~~~~~~l~~~i~vV~vhP-----n~pg~~~r~lf~~G~e~~g  256 (313)
                      ++++-.+..+.++.+.+.+++++.|+ .--|... ..+..   .++...-+.++.+     .+|+...         ..|
T Consensus        73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~~il~G~~~~~a~~~~~g~v~---------~~g  140 (307)
T COG1893          73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKETVLGGVTTHGAVREGPGHVV---------HTG  140 (307)
T ss_pred             EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcceEEEEEeeeeeEecCCceEE---------Eec
Confidence            99999999999999999999998655 6667753 33433   4455422233333     2333331         122


Q ss_pred             CCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          257 AGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       257 ~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                      .|... +........+..+.+.++++..|...
T Consensus       141 ~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~~  171 (307)
T COG1893         141 LGDTV-IGELRGGRDELVKALAELFKEAGLEV  171 (307)
T ss_pred             CCcEE-EccCCCCchHHHHHHHHHHHhCCCCe
Confidence            34444 33333322355556666666666443

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.05  E-value=4.4e-05  Score=72.27  Aligned_cols=156  Identities=16%  Similarity=0.216  Sum_probs=105.2

Q ss_pred             CEEEEEcccch--------------------HHHHHHHHHhchhhhcCCcEEEEEecC----CcccHHHHHHCCceecCC
Q 021356          112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENG  167 (313)
Q Consensus       112 kkIgIIG~G~m--------------------G~AlA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~  167 (313)
                      +||.|.|.||+                    |..+|--+...      |++|++...+    +.+.++.-...|+..   
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v---   72 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV---   72 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE---
Confidence            67777777775                    44556655556      9998877643    234477778889875   


Q ss_pred             CcCCHHhhhccCCEEEEcccchhH-HHHHHHHHhcCCCCcEEEEecCch---h-hhhhhcccCC-CCCccEEEeccCC-C
Q 021356          168 TLGDIYETISGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDF-PKNIGVIAVCPKG-M  240 (313)
Q Consensus       168 ~~~~~~e~i~~ADvIiLavP~~a~-~~vi~ei~~~mk~gaiLid~~Gv~---l-~~~~~~~~~l-~~~i~vV~vhPn~-p  240 (313)
                       +.+..++++.+.+.+|-+|-... ..+.++|.+++..|++|+..+-+.   + -.++. .+.. ++++.+-..||-+ |
T Consensus        73 -v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVGvssmHPAgvP  150 (340)
T COG4007          73 -VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVGVSSMHPAGVP  150 (340)
T ss_pred             -ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh-hhcCchhhcCccccCCCCCC
Confidence             45777899999999999999854 568889999999999998766542   2 22222 2222 3577777788843 5


Q ss_pred             chhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021356          241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       241 g~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~  286 (313)
                      |....+.|.-+      |.+.  .-.+-++++.++++.+++++.|.
T Consensus       151 Gtp~h~~yvia------gr~t--~g~elATeEQi~r~velaes~Gk  188 (340)
T COG4007         151 GTPQHGHYVIA------GRST--EGKELATEEQIERCVELAESTGK  188 (340)
T ss_pred             CCCCCceEEEe------ccCC--CceeeccHHHHHHHHHHHHhcCC
Confidence            55533333321      1111  01235678999999999999994

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.03  E-value=1.1e-05  Score=72.87  Aligned_cols=91  Identities=18%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIi  183 (313)
                      ..+|+| |+|+|+|+|+||..+|+.|.+.      |++|++.+++..+..+.+...|...     .+.+++.. ++|+++
T Consensus        23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v   90 (200)
T cd01075          23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA   90 (200)
T ss_pred             CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence            367899 9999999999999999999999      9998755443322223333335442     23455554 899998


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      .+..-..+.   ++..+.|+. .+|+..
T Consensus        91 p~A~~~~I~---~~~~~~l~~-~~v~~~  114 (200)
T cd01075          91 PCALGGVIN---DDTIPQLKA-KAIAGA  114 (200)
T ss_pred             ecccccccC---HHHHHHcCC-CEEEEC
Confidence            666543222   233444543 455543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=1.7e-05  Score=75.89  Aligned_cols=76  Identities=21%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| ++|+|||. |.||..+|..|.+.      |..|.+.. .  +                +.++.+.+++||+||.
T Consensus       154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~-s--~----------------t~~l~~~~~~ADIVI~  207 (284)
T PRK14179        154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTH-S--R----------------TRNLAEVARKADILVV  207 (284)
T ss_pred             CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEEC-C--C----------------CCCHHHHHhhCCEEEE
Confidence            47899 99999999 99999999999998      99877651 1  1                1267789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++....   ++.  .++|+|++|+|++
T Consensus       208 avg~~~~---v~~--~~ik~GavVIDvg  230 (284)
T PRK14179        208 AIGRGHF---VTK--EFVKEGAVVIDVG  230 (284)
T ss_pred             ecCcccc---CCH--HHccCCcEEEEec
Confidence            9997654   322  2389999999985

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.99  E-value=0.00014  Score=72.27  Aligned_cols=88  Identities=20%  Similarity=0.306  Sum_probs=61.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-------------------HHHHHHCCceecCCCcCCH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI  172 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~~~~~~  172 (313)
                      .+|||||+|-+|-.+|..+...      |++| +|.|.++..                   .+.+++.|.-.   .+++.
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~   79 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP   79 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence            7999999999999999999888      9886 566644321                   23455555332   12344


Q ss_pred             HhhhccCCEEEEcccch--h--------HHHHHHHHHhcCCCCcEEEE
Q 021356          173 YETISGSDLVLLLISDA--A--------QADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~--a--------~~~vi~ei~~~mk~gaiLid  210 (313)
                      + -++.||++++|+|..  .        ..+..+.|.+.|++|.+|+.
T Consensus        80 ~-~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl  126 (436)
T COG0677          80 E-ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL  126 (436)
T ss_pred             h-hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence            4 456999999999732  1        11234578999999999874

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.99  E-value=7.9e-06  Score=69.20  Aligned_cols=96  Identities=20%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~i~~ADv  181 (313)
                      .+++| +++.|||.|-+|++++..|.+.      |.. +.+.+|..++..+.+...+   +..  ....+..+.+.++|+
T Consensus         8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di   78 (135)
T PF01488_consen    8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI   78 (135)
T ss_dssp             STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred             CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence            57899 9999999999999999999999      885 8888887655555555542   111  114466678899999


Q ss_pred             EEEcccchhHHHHH-HHHHhcCCCC-cEEEEec
Q 021356          182 VLLLISDAAQADNY-EKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi-~ei~~~mk~g-aiLid~~  212 (313)
                      ||.++|....  .+ ++..+...+. .+++|.+
T Consensus        79 vI~aT~~~~~--~i~~~~~~~~~~~~~~v~Dla  109 (135)
T PF01488_consen   79 VINATPSGMP--IITEEMLKKASKKLRLVIDLA  109 (135)
T ss_dssp             EEE-SSTTST--SSTHHHHTTTCHHCSEEEES-
T ss_pred             EEEecCCCCc--ccCHHHHHHHHhhhhceeccc
Confidence            9999997654  22 2334333322 3888885

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.95  E-value=3.9e-05  Score=64.86  Aligned_cols=99  Identities=19%  Similarity=0.235  Sum_probs=71.0

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhhccCCEEE
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL  183 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----------~~~~~e~i~~ADvIi  183 (313)
                      |.|+|.|.||.-+|..|.+.      |++|.+..+..  ..+.-.+.|+...+..          ..+..+.....|+||
T Consensus         1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi   72 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI   72 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred             CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence            78999999999999999988      99987777653  3344455665431111          111124577899999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEE-EecCch-hhhhh
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQ  220 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~  220 (313)
                      ++++-.+..+.++.+.+++++++.|+ .--|+. ...+.
T Consensus        73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~  111 (151)
T PF02558_consen   73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA  111 (151)
T ss_dssp             E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH
T ss_pred             EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH
Confidence            99999999999999999999986554 667775 33443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.92  E-value=3.8e-05  Score=71.58  Aligned_cols=155  Identities=16%  Similarity=0.211  Sum_probs=107.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC-------------
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN-------------  166 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~-------------  166 (313)
                      |+.++|||.|.||..+|+-...+      |++|.+.++. ++.+.+|.+           .+..+..             
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r   83 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR   83 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence            48899999999999999999999      9998766544 333333321           1111100             


Q ss_pred             -CCcCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 021356          167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP  242 (313)
Q Consensus       167 -~~~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~  242 (313)
                       .+.++..++++++|+||=++-.+.-.  ++++++-...|++++++ ..+++.+..+..   .....-.|.+.|=--|.+
T Consensus        84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP  160 (298)
T KOG2304|consen   84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP  160 (298)
T ss_pred             HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence             12456777888999998776554432  36777777778999886 788888766654   334456788888877787


Q ss_pred             hHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      .| .|.+             +..+.+++++.......+.+.+|..-+
T Consensus       161 vM-KLvE-------------Vir~~~TS~eTf~~l~~f~k~~gKttV  193 (298)
T KOG2304|consen  161 VM-KLVE-------------VIRTDDTSDETFNALVDFGKAVGKTTV  193 (298)
T ss_pred             hH-HHhh-------------hhcCCCCCHHHHHHHHHHHHHhCCCce
Confidence            75 2222             345678888988888999999996543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.88  E-value=2.6e-05  Score=77.95  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++.| ++++|||.|.||..+++.|+..      |. +|++.++...+..+.+.+.|...  ....+..+.+.++|+||.+
T Consensus       179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~--~~~~~~~~~l~~aDvVI~a  249 (423)
T PRK00045        179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEA--IPLDELPEALAEADIVISS  249 (423)
T ss_pred             CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcE--eeHHHHHHHhccCCEEEEC
Confidence            4789 9999999999999999999988      87 67777776544445666665321  0123566788999999999


Q ss_pred             ccchhH---HHHHHHHHh-cCCCCcEEEEecC
Q 021356          186 ISDAAQ---ADNYEKIFS-CMKPNSILGLSHG  213 (313)
Q Consensus       186 vP~~a~---~~vi~ei~~-~mk~gaiLid~~G  213 (313)
                      ++....   .+.++.... .-+.+.+++|.+-
T Consensus       250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        250 TGAPHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             CCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            985432   234443221 1123467788863

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.85  E-value=3.4e-05  Score=75.98  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhhccCCEEEEc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~~~~~~~e~i~~ADvIiLa  185 (313)
                      +.+ .++.|||.|.+|...++.++..      |.+|++.+++..+....+...|.... . ....++.+.++++|+||.+
T Consensus       165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence            566 8899999999999999999999      99877666543322222233333110 0 0012456788999999999


Q ss_pred             ccc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          186 ISD--AAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~--~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                      ++.  .....++ ++....||++.+|+|++
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            853  2223444 46778899999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.83  E-value=3.8e-05  Score=75.45  Aligned_cols=94  Identities=24%  Similarity=0.260  Sum_probs=78.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .-++| |++.|.|+|-.|..+|+.++..      |.+|++..-. +-..-+|.-.||.     +.+++|+++.+|++|-+
T Consensus       205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvD-PI~AleA~MdGf~-----V~~m~~Aa~~gDifiT~  271 (420)
T COG0499         205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVD-PIRALEAAMDGFR-----VMTMEEAAKTGDIFVTA  271 (420)
T ss_pred             eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecC-chHHHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence            35788 9999999999999999999999      9998877654 3334567778998     45899999999999999


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~  215 (313)
                      +-..   +++. +.+..||+|+||..++-|.
T Consensus       272 TGnk---dVi~~eh~~~MkDgaIl~N~GHFd  299 (420)
T COG0499         272 TGNK---DVIRKEHFEKMKDGAILANAGHFD  299 (420)
T ss_pred             cCCc---CccCHHHHHhccCCeEEecccccc
Confidence            8874   4565 7888899999999888763

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=4.4e-05  Score=73.46  Aligned_cols=90  Identities=18%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhhccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .. ++|+|||+|.||..+++.+...    ....+|.+++|..++..+.+.+.   |  +..    ..+.++++++||+|+
T Consensus       124 ~~-~~v~iiG~G~~a~~~~~al~~~----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi  194 (314)
T PRK06141        124 DA-SRLLVVGTGRLASLLALAHASV----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIIS  194 (314)
T ss_pred             CC-ceEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEE
Confidence            34 9999999999999999877652    01346777777655444444432   3  221    457888999999998


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      .++|..  ..++..  +.++||++|.-+
T Consensus       195 ~aT~s~--~pvl~~--~~l~~g~~i~~i  218 (314)
T PRK06141        195 CATLST--EPLVRG--EWLKPGTHLDLV  218 (314)
T ss_pred             EeeCCC--CCEecH--HHcCCCCEEEee
Confidence            888865  234432  457899854433

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=6.1e-05  Score=72.13  Aligned_cols=76  Identities=18%  Similarity=0.201  Sum_probs=61.3

Q ss_pred             cccCCCCEEEEEcccch-HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~m-G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|.+ |..++..|...      |..|.+...+                   ..++.+.+++||+||.
T Consensus       154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~  207 (285)
T PRK14189        154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA  207 (285)
T ss_pred             CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence            46899 99999999988 99999999988      8887653211                   2367789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++-.   .++..  +++|+|++|+|++
T Consensus       208 avG~~---~~i~~--~~ik~gavVIDVG  230 (285)
T PRK14189        208 AVGKR---NVLTA--DMVKPGATVIDVG  230 (285)
T ss_pred             cCCCc---CccCH--HHcCCCCEEEEcc
Confidence            99943   34543  6789999999987

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.76  E-value=0.00017  Score=67.51  Aligned_cols=161  Identities=18%  Similarity=0.251  Sum_probs=90.6

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      +++|+|||+ |.||+.+++.+.+.     .++++....+.+.+........|+..    ..+++++++++|+|+.++||.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~   71 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE   71 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence            379999998 99999999988763     16776655555433222112234422    458888888999999999999


Q ss_pred             hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCC-chh--HHHHHHhcccccCCCceEEEEe
Q 021356          190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM-GPS--VRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       190 a~~~vi~ei~~~mk~ga-iLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~p-g~~--~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      ...+++...+.+   |. +|+-..|+.....+.... ..+.+.++- .||.. +..  ++-+-...+.+..+.+ -|+-.
T Consensus        72 ~~~~~~~~al~~---G~~vvigttG~s~~~~~~l~~-aa~~~~v~~-s~n~s~g~~~~~~l~~~aa~~l~~~d~-ei~E~  145 (257)
T PRK00048         72 ATLENLEFALEH---GKPLVIGTTGFTEEQLAELEE-AAKKIPVVI-APNFSIGVNLLMKLAEKAAKYLGDYDI-EIIEA  145 (257)
T ss_pred             HHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH-HhcCCCEEE-ECcchHHHHHHHHHHHHHHHhcCCCCE-EEEEc
Confidence            887777655543   33 444456776433332111 123444443 34332 211  1111111111111211 12333


Q ss_pred             cc----C-CCHHHHHHHHHHHHHcCC
Q 021356          266 HQ----D-VDGRATNVALGWSVALGS  286 (313)
Q Consensus       266 ~~----d-~~~ea~e~a~~L~~alG~  286 (313)
                      |.    | .++.++.+++.+.+..+.
T Consensus       146 HH~~K~DaPSGTA~~l~~~i~~~~~~  171 (257)
T PRK00048        146 HHRHKVDAPSGTALKLAEAIAEARGR  171 (257)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHhhcc
Confidence            33    3 378999999988887763

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.75  E-value=9.4e-05  Score=61.25  Aligned_cols=92  Identities=16%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             EEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCC----ceecCCCc-CCHHhhhccCCEEEEc
Q 021356          113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAG----FTEENGTL-GDIYETISGSDLVLLL  185 (313)
Q Consensus       113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G----~~~~~~~~-~~~~e~i~~ADvIiLa  185 (313)
                      ||+||| .|.+|..+.+.|.+.     +.++++....+.. .-.......+    +.+  -.. ....+.+.++|+|++|
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence            699999 999999999999885     2455433333222 1111222221    211  001 1233456999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|.....++.+++   +++|..|+|.++.
T Consensus        74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~   99 (121)
T PF01118_consen   74 LPHGASKELAPKL---LKAGIKVIDLSGD   99 (121)
T ss_dssp             SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred             CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence            9999888888876   4578899998875

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.74  E-value=8.6e-05  Score=71.89  Aligned_cols=95  Identities=17%  Similarity=0.085  Sum_probs=63.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      .+++||||+|.||..+++.+....    ..-+|.++++..++....+.   +.|+..  ....+.+|++++||+|+.+||
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~  201 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP  201 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence            389999999999999998886641    12356666655443332222   345311  125689999999999999998


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ...  .++.  .+.+|||+.|.-++...
T Consensus       202 s~~--P~~~--~~~l~~g~~v~~vGs~~  225 (325)
T TIGR02371       202 SRK--PVVK--ADWVSEGTHINAIGADA  225 (325)
T ss_pred             CCC--cEec--HHHcCCCCEEEecCCCC
Confidence            642  2332  23569999988777553

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.72  E-value=0.00014  Score=70.32  Aligned_cols=94  Identities=21%  Similarity=0.193  Sum_probs=75.8

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      -+.| |...|.|+|..|..-|++||.+      |..|++..-. +-..-+|.-.|+.     +.+++|++++.|+++-++
T Consensus       211 M~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiD-PI~ALQAaMeG~~-----V~tm~ea~~e~difVTtT  277 (434)
T KOG1370|consen  211 MIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEID-PICALQAAMEGYE-----VTTLEEAIREVDIFVTTT  277 (434)
T ss_pred             eecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccC-chHHHHHHhhccE-----eeeHHHhhhcCCEEEEcc
Confidence            4677 9999999999999999999999      9888776543 3344466667887     569999999999999988


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      --..+  +..+.+..||.++||+..+-+.
T Consensus       278 Gc~di--i~~~H~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  278 GCKDI--ITGEHFDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             CCcch--hhHHHHHhCcCCcEEecccccc
Confidence            75433  3358899999999999887764

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.72  E-value=0.00011  Score=73.45  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ..+.| ++++|||.|.||..+++.|+..      | .+|++.++...+..+.+.+.|...  -...+..+.+.++|+||.
T Consensus       176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~--i~~~~l~~~l~~aDvVi~  246 (417)
T TIGR01035       176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEA--VKFEDLEEYLAEADIVIS  246 (417)
T ss_pred             CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeE--eeHHHHHHHHhhCCEEEE
Confidence            35889 9999999999999999999998      8 467777776544445666655421  012356788899999999


Q ss_pred             cccchhH---HHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQ---ADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~---~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++....   .+.++.....=+...+++|.+
T Consensus       247 aT~s~~~ii~~e~l~~~~~~~~~~~~viDla  277 (417)
T TIGR01035       247 STGAPHPIVSKEDVERALRERTRPLFIIDIA  277 (417)
T ss_pred             CCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence            9975442   123333221111234677886

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.70  E-value=0.00032  Score=66.03  Aligned_cols=81  Identities=21%  Similarity=0.232  Sum_probs=52.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      |++|||||+|.||..+++.+.+.     .++++....+.+....+.....  +...    +.+++++-.+.|+|+.++|+
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~   71 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH   71 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence            47999999999999999998764     1445433333322111111111  3321    45777774569999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.++..+.+.
T Consensus        72 ~~~~e~~~~aL~   83 (265)
T PRK13303         72 AALKEHVVPILK   83 (265)
T ss_pred             HHHHHHHHHHHH
Confidence            888777766554

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.68  E-value=0.00013  Score=64.53  Aligned_cols=76  Identities=18%  Similarity=0.258  Sum_probs=59.6

Q ss_pred             cccCCCCEEEEEcccch-HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~m-G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| ++|.|||.|.| |..+++.|.+.      |.+|.+..|..                   .++.+.+++||+||.
T Consensus        40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs   93 (168)
T cd01080          40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV   93 (168)
T ss_pred             CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence            57899 99999999997 77799999998      88776666541                   156678999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++-..   ++..  +.++++.+|+|.+
T Consensus        94 at~~~~---ii~~--~~~~~~~viIDla  116 (168)
T cd01080          94 AVGKPG---LVKG--DMVKPGAVVIDVG  116 (168)
T ss_pred             cCCCCc---eecH--HHccCCeEEEEcc
Confidence            998753   3432  1367788888876

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.66  E-value=0.00013  Score=69.81  Aligned_cols=77  Identities=14%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||.|. +|..+|+.|...      |..|++..++.                   .++.+.+++||+||.
T Consensus       154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs  207 (286)
T PRK14175        154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS  207 (286)
T ss_pred             CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence            47999 9999999988 999999999988      88887665431                   156788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++-..   ++..  +++|+|++|+|++-
T Consensus       208 Avg~p~---~i~~--~~vk~gavVIDvGi  231 (286)
T PRK14175        208 AVGKPG---LVTK--DVVKEGAVIIDVGN  231 (286)
T ss_pred             CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence            998643   3442  35799999999874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.59  E-value=0.00015  Score=64.41  Aligned_cols=99  Identities=20%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----Cc--eecC-CCcCCHHhhhc
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETIS  177 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~--~~~~-~~~~~~~e~i~  177 (313)
                      .+++| +++.|+|. |.+|.++++.|.+.      |.+|++..|..++..+.+.+.    +.  ...+ ....+..+.++
T Consensus        24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   96 (194)
T cd01078          24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK   96 (194)
T ss_pred             cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence            36788 99999995 99999999999988      888877766543322222221    11  1000 00113347889


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++|+||.++|.....  ........+++.+++|+.-
T Consensus        97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~~  130 (194)
T cd01078          97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVNA  130 (194)
T ss_pred             cCCEEEECCCCCcee--chhhhcccCceeEEEEccC
Confidence            999999999977651  1222224556788888753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN00203 glutamyl-tRNA reductase

Probab=97.58  E-value=0.00029  Score=72.65  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      +|.+ ++|+|||.|.||..+++.|...      |. +|++.+|...+....+.+. |....-....+..+++.++|+||.
T Consensus       263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs  335 (519)
T PLN00203        263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT  335 (519)
T ss_pred             CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence            3788 9999999999999999999988      86 5777777655544555444 221000013466788999999999


Q ss_pred             cccchh---HHHHHHHHHhcCC---CCcEEEEec
Q 021356          185 LISDAA---QADNYEKIFSCMK---PNSILGLSH  212 (313)
Q Consensus       185 avP~~a---~~~vi~ei~~~mk---~gaiLid~~  212 (313)
                      +|+-..   ..+.++++.+.-+   ...+++|.+
T Consensus       336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence            986332   2345554432211   113566765

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.55  E-value=0.0007  Score=66.14  Aligned_cols=96  Identities=20%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceec-----------CC---CcCCHHhh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEE-----------NG---TLGDIYET  175 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~-----------~~---~~~~~~e~  175 (313)
                      +.+|||+|+|.||+.+++.+.+.     .+++++...+.+.+... .++..|+...           +.   ...+.+++
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence            46899999999999999998764     26776655554432222 2333332100           00   02356778


Q ss_pred             hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +.++|+|+.++|+....+..+...   +.|+.+++.+|.
T Consensus        76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~~  111 (341)
T PRK04207         76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGGE  111 (341)
T ss_pred             hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCCC
Confidence            889999999999988777776544   347778888774

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00023  Score=69.08  Aligned_cols=167  Identities=18%  Similarity=0.070  Sum_probs=97.2

Q ss_pred             cccccchhhhhhcccccch-hhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356           72 LDFETSVFKKDAISLANRD-EFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus        72 ~~f~~~~~~~~~~~~~~~~-e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+--+.++-.--+....|. |. .++|+=.+--..-.... -++.|||.|.+|..-|+.+...      |-+|.+.+.+-
T Consensus       130 LaPMSeVAGrla~q~Ga~~lek-~~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~  201 (371)
T COG0686         130 LAPMSEVAGRLAAQAGAYYLEK-TNGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI  201 (371)
T ss_pred             cchHHHHhhhHHHHHHHHHHHh-ccCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence            4445555554334444433 44 66666543211122233 5899999999999999988877      88888887653


Q ss_pred             cccHHHHHHCCce--ecCCCcCCHHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec----Cch-hhhhh
Q 021356          151 SRSFAEARAAGFT--EENGTLGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH----GFL-LGHLQ  220 (313)
Q Consensus       151 ~~s~~~A~~~G~~--~~~~~~~~~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~----Gv~-l~~~~  220 (313)
                      .+....-...+..  ..-++...+++.++++|+||-++  |-.....++ ++..++||||++|+|++    |+- ..+.-
T Consensus       202 ~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~T  281 (371)
T COG0686         202 DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPT  281 (371)
T ss_pred             HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccc
Confidence            3322222222221  11123346788999999999765  555566655 58899999999998764    541 11111


Q ss_pred             h-cccCCCCCccEEEeccCCCchhHHH
Q 021356          221 S-IGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       221 ~-~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      . .....-++-.+--+-||+|+...|.
T Consensus       282 Th~~PtY~~~gvvhY~VaNmPgaVprT  308 (371)
T COG0686         282 THDDPTYEVDGVVHYGVANMPGAVPRT  308 (371)
T ss_pred             cCCCCceeecCEEEEecCCCCccccch
Confidence            0 0001111112223668999988544

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.52  E-value=0.0011  Score=62.56  Aligned_cols=163  Identities=15%  Similarity=0.139  Sum_probs=90.8

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhhccCCE
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +++|+||| +|.||+.+++.+.+.     .+++++...+ .++...  ..+..     .|+..    ..+++++...+|+
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv   71 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV   71 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence            36899999 699999999998764     2777665555 322111  11222     23331    3577777567999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC-CccEEEeccCCCchh---HHHHHHhcccccCC
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK-NIGVIAVCPKGMGPS---VRRLYVQGKEINGA  257 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~-~i~vV~vhPn~pg~~---~r~lf~~G~e~~g~  257 (313)
                      ||.++||....+++...+.+=+  .+|+-..|+.....+.......+ ++. +...||+.--.   ++-+....+.+..+
T Consensus        72 VIdfT~p~~~~~~~~~al~~g~--~vVigttg~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l~~~  148 (266)
T TIGR00036        72 LIDFTTPEGVLNHLKFALEHGV--RLVVGTTGFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYLGDY  148 (266)
T ss_pred             EEECCChHHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhccCC
Confidence            9999999888887776554322  25555668754333221111111 233 34445554332   11111111112122


Q ss_pred             CceEEEEecc----C-CCHHHHHHHHHHHHHcCC
Q 021356          258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS  286 (313)
Q Consensus       258 G~~~iitp~~----d-~~~ea~e~a~~L~~alG~  286 (313)
                      .+- |+-.|.    | .++.++.+++.+.+..+.
T Consensus       149 die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~  181 (266)
T TIGR00036       149 DIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE  181 (266)
T ss_pred             CEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence            222 233443    2 378999999888887763

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.51  E-value=0.00021  Score=68.54  Aligned_cols=92  Identities=20%  Similarity=0.139  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHh-chhhhcCCc-EEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .. ++++|||.|.||..+++.+.. .      +. +|.++.|..++..+.+.+.   ++..   ...+.++++.++|+|+
T Consensus       124 ~~-~~v~IiGaG~qa~~~~~al~~~~------~~~~v~v~~r~~~~a~~~a~~~~~~~~~~---~~~~~~~av~~aDiVi  193 (304)
T PRK07340        124 PP-GDLLLIGTGVQARAHLEAFAAGL------PVRRVWVRGRTAASAAAFCAHARALGPTA---EPLDGEAIPEAVDLVV  193 (304)
T ss_pred             CC-CEEEEECCcHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHHHhcCCee---EECCHHHHhhcCCEEE
Confidence            45 899999999999999999975 3      54 5666666544444444433   2221   1347888999999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      .+||...  .+++.   .+|||+.|.-+++..
T Consensus       194 taT~s~~--Pl~~~---~~~~g~hi~~iGs~~  220 (304)
T PRK07340        194 TATTSRT--PVYPE---AARAGRLVVAVGAFT  220 (304)
T ss_pred             EccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence            9999764  34442   479999888777654

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.51  E-value=0.00033  Score=68.23  Aligned_cols=77  Identities=10%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      .+|+|||+|+||..+++.+.+.     .+++++...+++... ......+...    ..+.++++.+.|+|++|+|...+
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th   73 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD   73 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence            6899999999999999998764     267765444554311 1222234331    34677788899999999998776


Q ss_pred             HHHHHHH
Q 021356          192 ADNYEKI  198 (313)
Q Consensus       192 ~~vi~ei  198 (313)
                      .+....+
T Consensus        74 ~~~~~~~   80 (324)
T TIGR01921        74 IPEQAPY   80 (324)
T ss_pred             HHHHHHH
Confidence            5544433

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.47  E-value=0.00044  Score=69.38  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|++ +++.|||.|-||.-.|+.|...      |. +|++.+|.-++..+.|.+.|...  ..+.++.+.+.++|+||.
T Consensus       174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis  244 (414)
T COG0373         174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS  244 (414)
T ss_pred             ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence            45899 9999999999999999999999      86 68888988777788888888432  224567789999999999


Q ss_pred             ccc-chhH-H-HHHHHHHhcCCCCcEEEEec
Q 021356          185 LIS-DAAQ-A-DNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP-~~a~-~-~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|. |..+ . +.+++..+.-+. -+++|.+
T Consensus       245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia  274 (414)
T COG0373         245 STSAPHPIITREMVERALKIRKR-LLIVDIA  274 (414)
T ss_pred             ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence            975 3333 2 255544333222 3556664

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.46  E-value=0.00043  Score=57.90  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=60.0

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ++|+|+|+ |.||..+++.+.+.     .++++..+.+++....   +...     ..|+..    ..++++++.++|+|
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv   71 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV   71 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence            58999999 99999999999883     1788666655543100   0001     123332    35889999999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCc-EEEEecCchh
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL  216 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~ga-iLid~~Gv~l  216 (313)
                      |-.+-|....+.++....+   |. +|+=+.|+.-
T Consensus        72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~  103 (124)
T PF01113_consen   72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD  103 (124)
T ss_dssp             EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred             EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence            9999887777777765554   33 4556778853

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.46  E-value=0.0012  Score=62.81  Aligned_cols=69  Identities=25%  Similarity=0.239  Sum_probs=43.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH--CCceec--C---CCcCCHHhhhccCCEE
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--N---GTLGDIYETISGSDLV  182 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~---~~~~~~~e~i~~ADvI  182 (313)
                      |+||+|||.|.||..+|..+...      |+ ++++.+...+.....+.+  ......  .   ....+. +.+++||+|
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV   74 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV   74 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence            58999999999999999998876      65 666665533222221211  110000  0   012344 568999999


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      |++.
T Consensus        75 ii~~   78 (307)
T PRK06223         75 VITA   78 (307)
T ss_pred             EECC
Confidence            9986

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.36  E-value=0.0019  Score=61.84  Aligned_cols=91  Identities=19%  Similarity=0.173  Sum_probs=63.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||.|+||.-++..+.+.     .+.++....+.++++  .+.+++.|+..   ...+.+++++  +-|+|++++|
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp   73 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS   73 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence            5799999999999998777654     155654444444433  45677788652   1346778775  5788999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ...+.++.....+   .|+.|+|-..
T Consensus        74 ~~~H~e~a~~al~---aGk~VIdekP   96 (285)
T TIGR03215        74 AKAHARHARLLAE---LGKIVIDLTP   96 (285)
T ss_pred             cHHHHHHHHHHHH---cCCEEEECCc
Confidence            9998887765543   5777776554

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.36  E-value=0.00061  Score=65.85  Aligned_cols=92  Identities=18%  Similarity=0.236  Sum_probs=62.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++++|||.|.||..++..+...     .+. +|.+..|..++..+.+.    +.++..  ....+.+++++++|+|+.+|
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT  200 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence            8999999999999999887543     054 45566555443333333    224321  11457889999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |-..  .++.   ..+|+|+.|+-+++..
T Consensus       201 ~s~~--p~i~---~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        201 NAKT--PVFS---EKLKKGVHINAVGSFM  224 (325)
T ss_pred             CCCC--cchH---HhcCCCcEEEecCCCC
Confidence            9652  3443   5679999998777653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.35  E-value=0.00061  Score=65.12  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|. .|.+++..|.+.      |..|.+..++                   ..++.+.+++||+||.
T Consensus       155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~  208 (283)
T PRK14192        155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG  208 (283)
T ss_pred             CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence            47899 9999999997 999999999988      8877766542                   1145677799999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++-..   .+..  +++|+|++|+|++
T Consensus       209 AtG~~~---~v~~--~~lk~gavViDvg  231 (283)
T PRK14192        209 AVGKPE---LIKK--DWIKQGAVVVDAG  231 (283)
T ss_pred             ccCCCC---cCCH--HHcCCCCEEEEEE
Confidence            996222   3331  4589999999886

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.34  E-value=0.0018  Score=62.56  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhc-----cCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i~-----~ADvIiL  184 (313)
                      .+|||||.|++|..++..+.+.     .+.++....+.++  +..+.+++.|+..   +..+.+++++     +.|+|+.
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~   76 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD   76 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence            6899999999999988887764     1556554444443  3346677888752   1357788884     5899999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++|...+.++.....   +.|+.++|....
T Consensus        77 AT~a~~H~e~a~~a~---eaGk~VID~sPA  103 (302)
T PRK08300         77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA  103 (302)
T ss_pred             CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence            999998888777654   458888876654

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.34  E-value=0.0013  Score=64.14  Aligned_cols=96  Identities=13%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceec-CCCcCCHHh-hhccCCEEEEcc
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIYE-TISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~~~~~~~e-~i~~ADvIiLav  186 (313)
                      |++|+|||. |.+|+.+++.|.+.     .+.+++...++.+.....+...+ +... +....+.++ ...++|+|++|+
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al   76 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL   76 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence            379999996 99999999998765     24565444443222111222111 1100 001122222 457899999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |.....++..+..+   .|+.|+|.++-
T Consensus        77 P~~~~~~~v~~a~~---aG~~VID~S~~  101 (343)
T PRK00436         77 PHGVSMDLAPQLLE---AGVKVIDLSAD  101 (343)
T ss_pred             CcHHHHHHHHHHHh---CCCEEEECCcc
Confidence            99988888877654   58899988764

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.32  E-value=0.00076  Score=69.41  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=68.0

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee------cCCC-------cCC---
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENGT-------LGD---  171 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~------~~~~-------~~~---  171 (313)
                      ..+ .++.|||.|.+|...++.++..      |.+|++.+++ ....+.++..|...      +++.       ..+   
T Consensus       162 vp~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence            445 7999999999999999999999      9886555544 44567777777542      0000       000   


Q ss_pred             -------HHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          172 -------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       172 -------~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                             +.+.++++|+||-++  |-.....++ ++..+.||||.+|+|++
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence                   345678999999887  222233444 47788999999999875

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.30  E-value=0.00031  Score=65.85  Aligned_cols=95  Identities=19%  Similarity=0.080  Sum_probs=62.2

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hhccCCEEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL  183 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e-~i~~ADvIi  183 (313)
                      .++ +++.|+|.|.+|.+++..|.+.      |.+|.+.+|..++..+.+.+.   |...    ..+.++ ...++|+||
T Consensus       115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI  183 (270)
T TIGR00507       115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII  183 (270)
T ss_pred             ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence            567 9999999999999999999988      888877777644433333332   2111    113333 346899999


Q ss_pred             EcccchhHHHHHH-H-HHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQADNYE-K-IFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~~~vi~-e-i~~~mk~gaiLid~~G  213 (313)
                      .++|.....++-+ . ....++++.+++|+.-
T Consensus       184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             ECCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            9999753221100 0 1234788888888753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.30  E-value=0.00095  Score=63.99  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-|. .|..++..|...      |..|.+..++                   +.++.+.+++||+||.
T Consensus       155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~  208 (285)
T PRK10792        155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV  208 (285)
T ss_pred             CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 9999999998 999999999988      8877665432                   1267789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++..  +++|+|++|+|++
T Consensus       209 avG~p~---~v~~--~~vk~gavVIDvG  231 (285)
T PRK10792        209 AVGKPG---FIPG--EWIKPGAIVIDVG  231 (285)
T ss_pred             cCCCcc---cccH--HHcCCCcEEEEcc
Confidence            995332   2321  6689999999987

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.0012  Score=65.25  Aligned_cols=146  Identities=18%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-HHHC-C--ceecCCCcCCHHhh---hccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAA-G--FTEENGTLGDIYET---ISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~-G--~~~~~~~~~~~~e~---i~~ADvIiL  184 (313)
                      ..||.||++.||+.+++++.+.      |+.|.+++|..++.-+. +.+. |  ++-    ..+++|.   ++.--+|+|
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g----a~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG----AYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC----CCCHHHHHHhcCCCcEEEE
Confidence            5689999999999999999999      99998888876654322 2221 2  331    3466765   467889999


Q ss_pred             cccchhHHH-HHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021356          185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       185 avP~~a~~~-vi~ei~~~mk~gaiLid~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      .++-..-++ +|+++.++|.+|.+|+|-+-.    +....++   .-.+++-||+.--++           |.|.-=+|.
T Consensus        77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~GP  142 (487)
T KOG2653|consen   77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYGP  142 (487)
T ss_pred             EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccCC
Confidence            998777666 889999999999999987643    1222221   112456677643322           111111222


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHcC
Q 021356          260 NSSFAVHQDVDGRATNVALGWSVALG  285 (313)
Q Consensus       260 ~~iitp~~d~~~ea~e~a~~L~~alG  285 (313)
                       . +.|..+  .++...++.+++.+-
T Consensus       143 -S-lMpGg~--~~Awp~ik~ifq~ia  164 (487)
T KOG2653|consen  143 -S-LMPGGS--KEAWPHIKDIFQKIA  164 (487)
T ss_pred             -c-cCCCCC--hHHHHHHHHHHHHHH
Confidence             2 466655  689999999998884

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.28  E-value=0.00097  Score=57.50  Aligned_cols=76  Identities=14%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| ++|.|||-+ ..|..++..|.+.      |..|.+..++                   ..++++.+++||+|+.
T Consensus        24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs   77 (140)
T cd05212          24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV   77 (140)
T ss_pred             CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence            47899 999999955 8899999999988      8887655432                   1266788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   +++  .+++|||++|+|++
T Consensus        78 Atg~~~---~i~--~~~ikpGa~Vidvg  100 (140)
T cd05212          78 GSPKPE---KVP--TEWIKPGATVINCS  100 (140)
T ss_pred             ecCCCC---ccC--HHHcCCCCEEEEcC
Confidence            998653   343  34589999999765

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.27  E-value=0.0013  Score=58.00  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..++..|.+.      |..|.+...+                   ..++++.+++||+||.
T Consensus        32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs   85 (160)
T PF02882_consen   32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS   85 (160)
T ss_dssp             -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred             CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence            47999 999999988 6999999999999      8877654322                   1267788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++.-..   +++  .+++|+|++|+|++-.
T Consensus        86 a~G~~~---~i~--~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   86 AVGKPN---LIK--ADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             -SSSTT----B---GGGS-TTEEEEE--CE
T ss_pred             eecccc---ccc--cccccCCcEEEecCCc
Confidence            997543   333  3568999999998744

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.27  E-value=0.00051  Score=68.93  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ..+.| +++.|||.|-||..+++.|.+.      |. ++++.+|...+..+.+.+.+ ...  ..+.++.+.+.++|+||
T Consensus       177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI  247 (414)
T PRK13940        177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII  247 (414)
T ss_pred             cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence            56889 9999999999999999999988      86 67788887555556666654 211  01235567899999999


Q ss_pred             Ecccch
Q 021356          184 LLISDA  189 (313)
Q Consensus       184 LavP~~  189 (313)
                      .||+-.
T Consensus       248 ~aT~a~  253 (414)
T PRK13940        248 AAVNVL  253 (414)
T ss_pred             ECcCCC
Confidence            999854

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.27  E-value=0.0017  Score=60.64  Aligned_cols=82  Identities=23%  Similarity=0.304  Sum_probs=58.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|||||+|.||+.+...+++-    .-+.+.++.+|++.+..+ .+...+..    ...+++|.+++.|+|+=|..+++
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A   72 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA   72 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence            5899999999999999998863    013455555555443332 22222332    24689999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 021356          191 QADNYEKIFSC  201 (313)
Q Consensus       191 ~~~vi~ei~~~  201 (313)
                      ..+...+++..
T Consensus        73 v~e~~~~~L~~   83 (255)
T COG1712          73 VREYVPKILKA   83 (255)
T ss_pred             HHHHhHHHHhc
Confidence            98888776654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.27  E-value=0.00039  Score=65.66  Aligned_cols=99  Identities=19%  Similarity=0.178  Sum_probs=65.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhhccCCEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL  183 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~i~~ADvIi  183 (313)
                      .++.+ +++.|+|.|-+|.+++..|.+.      | .+|.+.+|..++..+.+.+.+... .... .+..+.+.++|+||
T Consensus       119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI  190 (278)
T PRK00258        119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII  190 (278)
T ss_pred             CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence            36788 9999999999999999999998      8 578888876544444444332110 0001 13346778999999


Q ss_pred             EcccchhHHH--HHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQAD--NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~--vi~ei~~~mk~gaiLid~~  212 (313)
                      -++|.....+  ...-....++++++|+|+.
T Consensus       191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        191 NATSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             ECCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            9999765421  1010123467788888763

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.27  E-value=0.00069  Score=65.54  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             CEEEEEcccchHHHHHHHHHh-chhhhcCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++++|||.|.||..+++.|.. .      +. +|.++.|..++..+.+.+.    |+..  ....+.++++++||+|+.+
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvta  201 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTT  201 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEe
Confidence            899999999999999999975 4      54 5667777655444444332    4421  1145788999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ||...  .++.  .+.+++|+.|..++..
T Consensus       202 T~s~~--p~i~--~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       202 TPSET--PILH--AEWLEPGQHVTAMGSD  226 (326)
T ss_pred             cCCCC--cEec--HHHcCCCcEEEeeCCC
Confidence            98743  2343  1347899988766543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=97.26  E-value=0.0014  Score=62.68  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=80.9

Q ss_pred             HCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCch---h-hhhhhcccCCCCCccEE
Q 021356          159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~---l-~~~~~~~~~l~~~i~vV  233 (313)
                      +.|+..    ..+..|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+.   + ..++.   .-++|+.+.
T Consensus       126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs  198 (342)
T PRK00961        126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT  198 (342)
T ss_pred             HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence            467764    4577799999999999999887 6789999999999999999888663   2 22222   226799999


Q ss_pred             EeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ..|| +..+.+     .|+       .+ + -.+.++++.++...+|.++.|..
T Consensus       199 S~HP-aaVPgt-----~Gq-------~~-i-~egyAtEEqI~klveL~~sa~k~  237 (342)
T PRK00961        199 SYHP-GAVPEM-----KGQ-------VY-I-AEGYADEEAVEKLYEIGKKARGN  237 (342)
T ss_pred             ccCC-CCCCCC-----CCc-------ee-c-ccccCCHHHHHHHHHHHHHhCCC
Confidence            9999 434443     143       22 2 35678999999999999999953

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.26  E-value=0.0017  Score=59.90  Aligned_cols=94  Identities=20%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE---EEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKG----SRS-------FAEARAAGFTEENGTLGD  171 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~---Vivg~r~~----~~s-------~~~A~~~G~~~~~~~~~~  171 (313)
                      ..+++ ++|.|+|.|.+|.+++..|.+.      |..   +++.+|++    .+.       .+.+++.+...   ...+
T Consensus        21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~   90 (226)
T cd05311          21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT   90 (226)
T ss_pred             CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence            46888 9999999999999999999988      874   77777762    221       22334332111   0126


Q ss_pred             HHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +.++++++|+||-++|+....   ++....|+++.++.+..
T Consensus        91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA  128 (226)
T ss_pred             HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence            778889999999999865543   24555667888887665

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06046 alanine dehydrogenase; Validated

Probab=97.25  E-value=0.00087  Score=64.84  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=60.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA----AGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++++|||+|.||...++++...     .+.+.+..++++.+.. +.+.+    .|+..  ....+.+++++ +|+|+++|
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT  201 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence            8999999999999999998753     1555444444433332 22222    24321  01347888887 99999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |...  .+++  .+++|+|+.|.-+++..
T Consensus       202 ps~~--P~~~--~~~l~~g~hV~~iGs~~  226 (326)
T PRK06046        202 PSRK--PVVK--AEWIKEGTHINAIGADA  226 (326)
T ss_pred             CCCC--cEec--HHHcCCCCEEEecCCCC
Confidence            9753  3343  23568999988777653

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.24  E-value=0.00071  Score=66.41  Aligned_cols=97  Identities=19%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhccCCEEEEc
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +-++++|||.|.|+..+++.+..-.     .+ +|.++.|..++..+.+.+   .|+..  ....+.++++++||+|+.+
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence            3489999999999999998887641     34 566776664433332222   23321  1145899999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |+......+++.  +.+|||+.|.-+++..
T Consensus       201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~~  228 (346)
T PRK07589        201 TADKTNATILTD--DMVEPGMHINAVGGDC  228 (346)
T ss_pred             cCCCCCCceecH--HHcCCCcEEEecCCCC
Confidence            974432234442  3578999887766553

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.21  E-value=0.0018  Score=50.52  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ..+++ ++++|+|.|.+|..++..|.+.      +. ++.+.++                               |+++-
T Consensus        19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~   60 (86)
T cd05191          19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT   60 (86)
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence            44788 9999999999999999999887      54 3433322                               99999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +++......  ++....++++.+|+|.
T Consensus        61 ~~~~~~~~~--~~~~~~~~~~~~v~~~   85 (86)
T cd05191          61 ATPAGVPVL--EEATAKINEGAVVIDL   85 (86)
T ss_pred             cCCCCCCch--HHHHHhcCCCCEEEec
Confidence            998754322  3345667889998875

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.20  E-value=0.0028  Score=60.90  Aligned_cols=66  Identities=18%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      +||+|||.|.||..+|..+...      |+ +|++.+.........+.+          .+.+.   ...+.++ +++||
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD   71 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD   71 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence            6899999999999999999887      65 665555432211112210          11111   1246665 78999


Q ss_pred             EEEEccc
Q 021356          181 LVLLLIS  187 (313)
Q Consensus       181 vIiLavP  187 (313)
                      +||++.+
T Consensus        72 iVIitag   78 (305)
T TIGR01763        72 IVVITAG   78 (305)
T ss_pred             EEEEcCC
Confidence            9999987

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.20  E-value=0.0057  Score=60.03  Aligned_cols=182  Identities=20%  Similarity=0.239  Sum_probs=105.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhh-cCCcEEEEEecCCccc---HHHHHH-----------CCcee-cC-CCcCCHHh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKGSRS---FAEARA-----------AGFTE-EN-GTLGDIYE  174 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~-~~G~~Vivg~r~~~~s---~~~A~~-----------~G~~~-~~-~~~~~~~e  174 (313)
                      .+|+|||.|+=|.++|+.+.....+. ....+|..+.+...-.   ....+-           .|+.. ++ ....|+.+
T Consensus        22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e  101 (372)
T KOG2711|consen   22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE  101 (372)
T ss_pred             eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence            89999999999999999987752222 1122444333221100   011100           01100 00 11468889


Q ss_pred             hhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCchhh----------hhhhcccCCCCCccEE----------
Q 021356          175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG----------HLQSIGLDFPKNIGVI----------  233 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~----------~~~~~~~~l~~~i~vV----------  233 (313)
                      ++++||+++..+|.+-+..+++++..++|+++.-+ .+-|+...          .+-.+.+..  ...++          
T Consensus       102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI--~~~vL~GaNiA~EVa  179 (372)
T KOG2711|consen  102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI--PCSVLMGANIASEVA  179 (372)
T ss_pred             HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC--CceeecCCchHHHHH
Confidence            99999999999999999999999999999999744 66666421          111111111  22222          


Q ss_pred             ---------Eecc-CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHHhhccc
Q 021356          234 ---------AVCP-KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIF  303 (313)
Q Consensus       234 ---------~vhP-n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~~d~~  303 (313)
                               +..+ +-.......+|.+        .++.+.+.+|++.-++-=+++=+.++|+.++--++...-+++-|+
T Consensus       180 ~~~f~e~tIg~~~~~~~~~~l~~lf~~--------p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~  251 (372)
T KOG2711|consen  180 NEKFCETTIGYKDKKEAGILLKKLFRT--------PYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAII  251 (372)
T ss_pred             hccccceeEeccchhhcchHHHHHhCC--------CceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHH
Confidence                     2221 1111124445543        456677777775554444455577777777766666666666554

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=97.19  E-value=0.0025  Score=61.13  Aligned_cols=107  Identities=14%  Similarity=0.157  Sum_probs=81.6

Q ss_pred             HCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCchh----hhhhhcccCCCCCccEE
Q 021356          159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~l----~~~~~~~~~l~~~i~vV  233 (313)
                      +.|+..    ..+..|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+..    ..++.   .-++|+.+.
T Consensus       124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~---l~R~DvgVs  196 (340)
T TIGR01723       124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED---LGREDLNVT  196 (340)
T ss_pred             HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh---hCcccCCee
Confidence            467764    4577799999999999999887 67899999999999999998886632    22222   226799999


Q ss_pred             EeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ..|| +..+.+            .|--+ + ..+.++++.++...+|.++.|..
T Consensus       197 S~HP-aaVPgt------------~~q~Y-i-~egyAtEEqI~klveL~~sa~k~  235 (340)
T TIGR01723       197 SYHP-GCVPEM------------KGQVY-I-AEGYASEEAVNKLYELGKKARGK  235 (340)
T ss_pred             ccCC-CCCCCC------------CCceE-e-ecccCCHHHHHHHHHHHHHhCCC
Confidence            9999 334442            12223 3 47899999999999999999954

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.0038  Score=58.52  Aligned_cols=157  Identities=15%  Similarity=0.070  Sum_probs=89.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      +.+||||.|..|.+......+-      ++.. -+.  .+.+.+.++..--+. .....+.+...+-.++++.-+|+..+
T Consensus        11 v~~~~vgtgrl~ra~~~ra~h~------~~~c-s~i--~srS~~~a~~LaE~~-~a~p~d~~~~ael~~~vfv~vpd~~~   80 (289)
T COG5495          11 VVVGIVGTGRLGRAALLRADHV------VVAC-SAI--SSRSRDRAQNLAETY-VAPPLDVAKSAELLLLVFVDVPDALY   80 (289)
T ss_pred             eEEEEeecchHHHHHHHHhcch------heee-hhh--hhcCHHHHhhchhcc-CCCccchhhChhhhceEEecchHHHH
Confidence            7899999999999955444333      4432 111  123333443311110 00012344445556778888887644


Q ss_pred             HHHHHHHHhcCCCCcEEEEecCch-hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021356          192 ADNYEKIFSCMKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD  270 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~Gv~-l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~  270 (313)
                      .++...  ...+||++|++++|+. .+.+..   .-+.+.--..+||++..+...+-..+-     .+..+.|+-. |  
T Consensus        81 s~vaa~--~~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~ea-D--  147 (289)
T COG5495          81 SGVAAT--SLNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGITEA-D--  147 (289)
T ss_pred             HHHHHh--cccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEeecc-c--
Confidence            444332  2357999999999986 333332   212344456799999888866644433     2332323322 2  


Q ss_pred             HHHHHHHHHHHHHcCCCceee
Q 021356          271 GRATNVALGWSVALGSPFTFA  291 (313)
Q Consensus       271 ~ea~e~a~~L~~alG~~~~~~  291 (313)
                      +.....++.|+..+|++.++.
T Consensus       148 ~~g~ai~q~la~emgg~~f~V  168 (289)
T COG5495         148 DVGYAIVQSLALEMGGEPFCV  168 (289)
T ss_pred             ccccHHHHHHHHHhCCCceee
Confidence            346667889999999886543

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.17  E-value=0.0021  Score=60.30  Aligned_cols=153  Identities=12%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC----------CCcCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN----------GTLGD  171 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~----------~~~~~  171 (313)
                      .||+|+|.|.+|+++|......      |++|..++-..+          +......+.|....+          +.+.+
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~   77 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS   77 (313)
T ss_pred             cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence            5899999999999999999988      999876654321          111222233322100          23568


Q ss_pred             HHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEEEecCchh-hhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLid~~Gv~l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      ++|++++|=.|-=|+|..-.-  .++.++-..+.|..|+.-+.+... ..+-. +  +-.....+-.||--|-.     |
T Consensus        78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPy-----f  149 (313)
T KOG2305|consen   78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPY-----F  149 (313)
T ss_pred             HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCc-----c
Confidence            899999987777788865543  266666566667666654444322 12211 1  22335678899933221     1


Q ss_pred             HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .-         -.=+.|+.-++++.+++..+|...+|-.
T Consensus       150 iP---------LvElVPaPwTsp~tVdrt~~lM~sigq~  179 (313)
T KOG2305|consen  150 IP---------LVELVPAPWTSPDTVDRTRALMRSIGQE  179 (313)
T ss_pred             cc---------hheeccCCCCChhHHHHHHHHHHHhCCC
Confidence            10         1126788889999999999999999944

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0014  Score=63.99  Aligned_cols=95  Identities=21%  Similarity=0.253  Sum_probs=66.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +...++|||.|.|+.-+.+.++.-.     ++ +|.++.|..+...+.+.   +.+... -....+.++++++||+|+-+
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~-----~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVR-----DIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhC-----CccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence            3489999999999999999998751     44 56667666544443332   233210 12356889999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ||...  .++.  .++++||+.|.-+++.
T Consensus       203 T~s~~--Pil~--~~~l~~G~hI~aiGad  227 (330)
T COG2423         203 TPSTE--PVLK--AEWLKPGTHINAIGAD  227 (330)
T ss_pred             cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence            99877  3333  2457899999877764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.15  E-value=0.0025  Score=62.35  Aligned_cols=95  Identities=13%  Similarity=0.113  Sum_probs=59.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEE-EEecCCcccHHHHHHCCceec--CCCc--CCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--~~~~--~~~~e~i~~ADvIiLa  185 (313)
                      ++|+|||. |.+|..+.+.|.+.     ++.+++ +..++.+.........+....  +...  .+.+++++++|+|++|
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a   75 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA   75 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence            58999998 99999999999865     245555 222222111111111221000  0001  2455666789999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|.....++..++.+   .|+.|+|.++.
T Consensus        76 lP~~~s~~~~~~~~~---~G~~VIDlS~~  101 (346)
T TIGR01850        76 LPHGVSAELAPELLA---AGVKVIDLSAD  101 (346)
T ss_pred             CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence            999988888877654   58889988764

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.08  E-value=0.0026  Score=60.26  Aligned_cols=78  Identities=21%  Similarity=0.240  Sum_probs=55.9

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCC--cEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSD--IVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G--~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLa  185 (313)
                      .+|||||+|.+++ ..+..+++.      +  +.++...+++ ++..+.+.+.|+..   ...+.++++++  -|+|+++
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia   74 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA   74 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence            7899999996664 578888776      4  3443333443 34456777778741   25689999986  5999999


Q ss_pred             ccchhHHHHHHHH
Q 021356          186 ISDAAQADNYEKI  198 (313)
Q Consensus       186 vP~~a~~~vi~ei  198 (313)
                      +|+..+.++..+.
T Consensus        75 tp~~~H~e~~~~A   87 (342)
T COG0673          75 TPNALHAELALAA   87 (342)
T ss_pred             CCChhhHHHHHHH
Confidence            9999998877543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.07  E-value=0.0033  Score=57.07  Aligned_cols=85  Identities=12%  Similarity=0.069  Sum_probs=58.4

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      -+|+| +++.|||.|.+|...++.|.+.      |.+|++..+.-.+........| +.....  .-.++.+.++|+||.
T Consensus         6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~--~~~~~~l~~adlVia   76 (202)
T PRK06718          6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK--EFEPSDIVDAFLVIA   76 (202)
T ss_pred             EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec--CCChhhcCCceEEEE
Confidence            58999 9999999999999999999998      8887766543222222222333 221001  111345789999999


Q ss_pred             cccchhHHHHHHHHH
Q 021356          185 LISDAAQADNYEKIF  199 (313)
Q Consensus       185 avP~~a~~~vi~ei~  199 (313)
                      ++.+....+.+.+..
T Consensus        77 aT~d~elN~~i~~~a   91 (202)
T PRK06718         77 ATNDPRVNEQVKEDL   91 (202)
T ss_pred             cCCCHHHHHHHHHHH
Confidence            999988877665443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.06  E-value=0.0014  Score=62.99  Aligned_cols=94  Identities=13%  Similarity=0.147  Sum_probs=64.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .++++|||.|.||..+++.+..-.     .+ +|.++.|..++..+.+.+    .|+..  ....+.++++++||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVY-----NPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence            389999999999999999987741     44 566666664443333332    24321  1246899999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |+-..  .+++  .+++|||+.|.-++...
T Consensus       190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~  215 (301)
T PRK06407        190 TNSDT--PIFN--RKYLGDEYHVNLAGSNY  215 (301)
T ss_pred             cCCCC--cEec--HHHcCCCceEEecCCCC
Confidence            99543  3443  23578998887776654

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.04  E-value=0.0042  Score=59.07  Aligned_cols=81  Identities=19%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLavP~~a  190 (313)
                      ++|||||+|.||..+++.|.+..   ..++++...+++.....+.. .....    .+.+++++ ..+.|+|+=|..+++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~----~~~~l~~ll~~~~DlVVE~A~~~a   74 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVA----LLDGLPGLLAWRPDLVVEAAGQQA   74 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCc----ccCCHHHHhhcCCCEEEECCCHHH
Confidence            79999999999999999987630   00355544455543222111 11122    25678886 588999999999888


Q ss_pred             HHHHHHHHHh
Q 021356          191 QADNYEKIFS  200 (313)
Q Consensus       191 ~~~vi~ei~~  200 (313)
                      ..+....++.
T Consensus        75 v~e~~~~iL~   84 (267)
T PRK13301         75 IAEHAEGCLT   84 (267)
T ss_pred             HHHHHHHHHh
Confidence            8877666554

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.03  E-value=0.0016  Score=66.38  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=52.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .++.| ++++|||.|.+|.+++..|.+.      |.++++.+|...+..+.+...+...  ....+.. .+.++|+||.+
T Consensus       328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna  397 (477)
T PRK09310        328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC  397 (477)
T ss_pred             CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence            45788 9999999999999999999998      9888777765433333333332110  0011222 25789999999


Q ss_pred             ccchh
Q 021356          186 ISDAA  190 (313)
Q Consensus       186 vP~~a  190 (313)
                      +|...
T Consensus       398 tP~g~  402 (477)
T PRK09310        398 LPPSV  402 (477)
T ss_pred             CCCCC
Confidence            99876

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.02  E-value=0.0027  Score=63.40  Aligned_cols=79  Identities=19%  Similarity=0.178  Sum_probs=56.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCC---c---eecCCCcCCHHhhhccCCEEE
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F---TEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~---~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      |++|.|||+|.+|..+|..|.+.      + .+|.++.|..++. +++....   +   ..+-.....+.+++++.|+||
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~-~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKC-ARIAELIGGKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHH-HHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence            48999999999999999999888      6 7888888875433 3333332   1   110011224568999999999


Q ss_pred             EcccchhHHHHHH
Q 021356          184 LLISDAAQADNYE  196 (313)
Q Consensus       184 LavP~~a~~~vi~  196 (313)
                      .+.|+.....+++
T Consensus        74 n~~p~~~~~~i~k   86 (389)
T COG1748          74 NAAPPFVDLTILK   86 (389)
T ss_pred             EeCCchhhHHHHH
Confidence            9999988777664

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0019  Score=62.03  Aligned_cols=76  Identities=16%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-| ..|..+|..|.+.      |..|.+....                   ..++.+.+++||+||.
T Consensus       153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~  206 (285)
T PRK14191        153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV  206 (285)
T ss_pred             CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence            47899 999999999 9999999999988      8877655221                   1256688999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       207 AvG~p~---~i~--~~~vk~GavVIDvG  229 (285)
T PRK14191        207 GVGKPD---LIK--ASMVKKGAVVVDIG  229 (285)
T ss_pred             ecCCCC---cCC--HHHcCCCcEEEEee
Confidence            997543   333  23569999999987

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.00  E-value=0.0018  Score=61.94  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||.+ ..|..+|..|...      |..|.+..++.                   .++.+.+++||+||.
T Consensus       148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~  201 (279)
T PRK14178        148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS  201 (279)
T ss_pred             CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence            47999 999999999 9999999999888      88776654321                   257788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++-.   .++.+  +++|||++|+|++
T Consensus       202 Avgk~---~lv~~--~~vk~GavVIDVg  224 (279)
T PRK14178        202 AAGKA---GFITP--DMVKPGATVIDVG  224 (279)
T ss_pred             CCCcc---cccCH--HHcCCCcEEEEee
Confidence            99733   34431  2369999999987

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.99  E-value=0.0047  Score=59.06  Aligned_cols=67  Identities=19%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC-------C--ceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------G--FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G--~~~~~~~~~~~~e~i~~AD  180 (313)
                      +||+|||.|.+|.++|..|...      |.  ++++.++..+.....+.+.       +  ...   ...+. +.+++||
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD   70 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD   70 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence            5899999999999999999888      74  6666665544333333221       1  111   12233 4579999


Q ss_pred             EEEEcccc
Q 021356          181 LVLLLISD  188 (313)
Q Consensus       181 vIiLavP~  188 (313)
                      +||+++..
T Consensus        71 IVIitag~   78 (306)
T cd05291          71 IVVITAGA   78 (306)
T ss_pred             EEEEccCC
Confidence            99999865

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.99  E-value=0.0022  Score=58.44  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=62.2

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc--CC----HHhhhcc
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~--~~----~~e~i~~  178 (313)
                      .+|+| |++.|||-+ .+|..+|..|.+.      |..|.+...+.-....   +.+-.. +...  .+    +.+.+++
T Consensus        58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~---~~~~~~-hs~t~~~~~~~~l~~~~~~  126 (197)
T cd01079          58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFT---RGESIR-HEKHHVTDEEAMTLDCLSQ  126 (197)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccc---cccccc-cccccccchhhHHHHHhhh
Confidence            37999 999999966 7899999999888      8887766432111000   000000 0001  12    6789999


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ||+||.+++-....  +.  .+++|+|++|+|++..
T Consensus       127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi~  158 (197)
T cd01079         127 SDVVITGVPSPNYK--VP--TELLKDGAICINFASI  158 (197)
T ss_pred             CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCCC
Confidence            99999999865430  32  2457899999998743

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.98  E-value=0.0019  Score=62.58  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .++++|||.|.|+..+++.+....     .+ +|.++.|..++..+.+   .+.|+..  ....+.++++++||+|+.+|
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~taT  200 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEec
Confidence            389999999999999999987641     33 5767766644433222   2224322  11457899999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +-..  .+++  .+.+|||+.|.-+++..
T Consensus       201 ~s~~--P~~~--~~~l~~G~hi~~iGs~~  225 (315)
T PRK06823        201 PSRE--PLLQ--AEDIQPGTHITAVGADS  225 (315)
T ss_pred             CCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence            8543  3443  23578999988777654

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.98  E-value=0.0019  Score=62.56  Aligned_cols=91  Identities=21%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++++|||.|.+|.+++..+....     +. +|.++.|..++..+.+.+    .|+..  ....+.++++.+||+|+.++
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence            89999999999999999987530     44 566666654443444332    24321  11457889999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      |...  .++..  ..+++|+.|..++.
T Consensus       206 ~s~~--p~i~~--~~l~~g~~v~~vg~  228 (330)
T PRK08291        206 PSEE--PILKA--EWLHPGLHVTAMGS  228 (330)
T ss_pred             CCCC--cEecH--HHcCCCceEEeeCC
Confidence            8653  34432  23678887765543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.96  E-value=0.00087  Score=58.60  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC------------------
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------  166 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~------------------  166 (313)
                      +..+.. .+|.|+|.|..|..-++.+++.      |.++++.+.. ....+.....+...-.                  
T Consensus        15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   86 (168)
T PF01262_consen   15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY   86 (168)
T ss_dssp             TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred             CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence            455566 8999999999999999999999      9987666544 3333444444432100                  


Q ss_pred             ----CCcCCHHhhhccCCEEEEcc--cchhHHHHHH-HHHhcCCCCcEEEEec
Q 021356          167 ----GTLGDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH  212 (313)
Q Consensus       167 ----~~~~~~~e~i~~ADvIiLav--P~~a~~~vi~-ei~~~mk~gaiLid~~  212 (313)
                          .....+.+.++.+|+||.++  |......++. +....|||+.+|+|++
T Consensus        87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence                00113557889999999643  5555667664 7888899999999874

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.95  E-value=0.0034  Score=53.73  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=43.8

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||. |.+|.++|..|...      +.  ++.+.++........+.+.       +...  .......+.+++||+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi   72 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI   72 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence            68999999 99999999999887      55  5555554433222222221       1100  001255678999999


Q ss_pred             EEEcc
Q 021356          182 VLLLI  186 (313)
Q Consensus       182 IiLav  186 (313)
                      |+++.
T Consensus        73 vvita   77 (141)
T PF00056_consen   73 VVITA   77 (141)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99987

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=96.95  E-value=0.028  Score=52.13  Aligned_cols=145  Identities=14%  Similarity=0.168  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhhccCCEEEEcccchhH
Q 021356          122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       122 mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ||..+|..|.+.      |.+|.+..|.  +..+.-++.|+...+  +        ...+.++ +...|+||+++|-.+.
T Consensus         2 iG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~   72 (293)
T TIGR00745         2 VGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQT   72 (293)
T ss_pred             chHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhH
Confidence            788999999988      9888777764  223334445643211  1        0112333 6789999999999988


Q ss_pred             HHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          192 ADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      .+.++.+.+++.++++|+ ..-|+. ...+..   .++++ +++      .....+|+..         +..|.|... |
T Consensus        73 ~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~~~~~~~~~pg~v---------~~~~~~~~~-i  138 (293)
T TIGR00745        73 EEAAALLLPLIGKNTKVLFLQNGLGHEERLRE---LLPAR-RILGGVVTHGAVREEPGVV---------HHAGLGATK-I  138 (293)
T ss_pred             HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH---HhCcc-CEEEEEEEEeeEEcCCcEE---------EEeccccEE-E
Confidence            889999999999888765 556774 333433   33432 233      2333344432         112233333 4


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCcee
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPFTF  290 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~~~  290 (313)
                      ...+... +..+.+.+++...|.....
T Consensus       139 G~~~~~~-~~~~~l~~~l~~~~~~~~~  164 (293)
T TIGR00745       139 GDYVGEN-EAVEALAELLNEAGIPAEL  164 (293)
T ss_pred             ecCCCch-HHHHHHHHHHHhCCCCCEe
Confidence            4332222 4455666777777755433

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.94  E-value=0.009  Score=48.09  Aligned_cols=93  Identities=23%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEcccch
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA  189 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADvIiLavP~~  189 (313)
                      |-|+|+|.+|..+++.|++.      +.++++.. .+++..+.+.+.|+..-.+...+.+.    -++++|.|++++++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD   73 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred             eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence            57999999999999999998      87765444 44556777788885422222333322    357899999999988


Q ss_pred             hHHHHHHHHHhcCCC-CcEEEEecC
Q 021356          190 AQADNYEKIFSCMKP-NSILGLSHG  213 (313)
Q Consensus       190 a~~~vi~ei~~~mk~-gaiLid~~G  213 (313)
                      ...-.+-..+..+.+ ..++..+..
T Consensus        74 ~~n~~~~~~~r~~~~~~~ii~~~~~   98 (116)
T PF02254_consen   74 EENLLIALLARELNPDIRIIARVND   98 (116)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred             HHHHHHHHHHHHHCCCCeEEEEECC
Confidence            665444433333333 344544443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.94  E-value=0.0049  Score=59.18  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=43.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--Ccee-c--CCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-E--NGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~--~~~~~~~~e~i~~ADvIiL  184 (313)
                      |||+|||.|.+|.++|..|...      |.  ++.+.++........+.+.  .... .  .....+. +.+++||+|++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii   73 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI   73 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence            5899999999999999999988      84  5555554332221122211  1100 0  0001233 56899999999


Q ss_pred             cccc
Q 021356          185 LISD  188 (313)
Q Consensus       185 avP~  188 (313)
                      +.+.
T Consensus        74 ta~~   77 (308)
T cd05292          74 TAGA   77 (308)
T ss_pred             ccCC
Confidence            9875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.93  E-value=0.0065  Score=58.74  Aligned_cols=70  Identities=19%  Similarity=0.123  Sum_probs=43.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i~~AD  180 (313)
                      +. +||+|||.|.||.+++..+...      |. ++++.+...+.....+.+.       +....-....+.+ .+++||
T Consensus         4 ~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~AD   75 (319)
T PTZ00117          4 KR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSD   75 (319)
T ss_pred             CC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCC
Confidence            45 8999999999999999998887      73 6555544332221222211       1000000123444 789999


Q ss_pred             EEEEcc
Q 021356          181 LVLLLI  186 (313)
Q Consensus       181 vIiLav  186 (313)
                      +|+++.
T Consensus        76 iVVita   81 (319)
T PTZ00117         76 VVVITA   81 (319)
T ss_pred             EEEECC
Confidence            999998

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.90  E-value=0.0067  Score=60.14  Aligned_cols=91  Identities=16%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCc--eecCCC-cCCHHhh-hccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGF--TEENGT-LGDIYET-ISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~--~~~~~~-~~~~~e~-i~~ADvIiLav  186 (313)
                      |+|.|+|+|.+|..+++.|++.      |+++++..+. ++..+...+ .|+  ...+.+ ...++++ +.++|.|++++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTD-EERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            6899999999999999999998      9887655543 333444433 443  211111 1123444 78999999999


Q ss_pred             cchhHHHHHHHHHhcC-CCCcEEE
Q 021356          187 SDAAQADNYEKIFSCM-KPNSILG  209 (313)
Q Consensus       187 P~~a~~~vi~ei~~~m-k~gaiLi  209 (313)
                      +.......+......+ +...+++
T Consensus        74 ~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         74 DSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             CChHHHHHHHHHHHHhcCCCeEEE
Confidence            9877655444333333 3333443

>PRK11579 putative oxidoreductase; Provisional

Probab=96.86  E-value=0.008  Score=58.08  Aligned_cols=79  Identities=9%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|||||+|.||.. .+..++..     .+++++...+.+.+.  .+.+.+..   ....+.+|+++  +.|+|++++|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~---~~~~~~~ell~~~~vD~V~I~tp~   74 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTV---TVVSEPQHLFNDPNIDLIVIPTPN   74 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCC---ceeCCHHHHhcCCCCCEEEEcCCc
Confidence            58999999999984 56666553     156665445554322  12223211   12468999996  57999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.++..+.+.
T Consensus        75 ~~H~~~~~~al~   86 (346)
T PRK11579         75 DTHFPLAKAALE   86 (346)
T ss_pred             HHHHHHHHHHHH
Confidence            998887765543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.85  E-value=0.00083  Score=64.73  Aligned_cols=96  Identities=22%  Similarity=0.282  Sum_probs=53.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH--H-CCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--A-AGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~--~-~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .++++|||.|.||..+++.+...+     ++ +|.++.|..+...+.+.  + .|+..  ..+.+.++++++||+|+.+|
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred             CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence            379999999999999999988741     44 56666665433222222  2 23322  12568999999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |-.....+++  .+.++||+.|.-+++..
T Consensus       201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~~  227 (313)
T PF02423_consen  201 PSTTPAPVFD--AEWLKPGTHINAIGSYT  227 (313)
T ss_dssp             --SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred             CCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence            8665212333  24678999888776653

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.84  E-value=0.0042  Score=64.05  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC------------c-CCH
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT------------L-GDI  172 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~------------~-~~~  172 (313)
                      ..| .++.|||.|.+|...++.++..      |.+| +..+.++...+.+++.|....  +..            . .+.
T Consensus       163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V-~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIV-RAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             cCC-CEEEEECCcHHHHHHHHHHHHC------CCEE-EEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence            467 9999999999999999999999      9865 455555667788888886510  000            0 010


Q ss_pred             --------HhhhccCCEEEEcccchh--HHHHH-HHHHhcCCCCcEEEEec
Q 021356          173 --------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       173 --------~e~i~~ADvIiLavP~~a--~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                              .+.++++|+||-++.-..  ...++ ++..+.||+|.+|+|++
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence                    122367999999986422  34554 78889999999998775

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.83  E-value=0.0029  Score=60.22  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=62.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~i~~AD  180 (313)
                      ..+.+ +++.|||.|-+|.+++..|...      |. +|.+.+|..++..+.+.+.+    ... -....+..+.++++|
T Consensus       123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~-~~~~~~~~~~~~~aD  194 (284)
T PRK12549        123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAAR-ATAGSDLAAALAAAD  194 (284)
T ss_pred             cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeE-EEeccchHhhhCCCC
Confidence            35778 9999999999999999999998      87 67777776555444444321    110 001224455778999


Q ss_pred             EEEEcccchhHHH---HHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQAD---NYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~---vi~ei~~~mk~gaiLid~  211 (313)
                      +||.++|......   -+.  ...++++.++.|+
T Consensus       195 iVInaTp~Gm~~~~~~~~~--~~~l~~~~~v~Di  226 (284)
T PRK12549        195 GLVHATPTGMAKHPGLPLP--AELLRPGLWVADI  226 (284)
T ss_pred             EEEECCcCCCCCCCCCCCC--HHHcCCCcEEEEe
Confidence            9999998754211   011  1235666677665

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.81  E-value=0.0045  Score=59.47  Aligned_cols=77  Identities=13%  Similarity=0.100  Sum_probs=59.8

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||.+. +|..++..|...      |..|.+...+                   +.++.+.+++||+||.
T Consensus       160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~  213 (287)
T PRK14176        160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV  213 (287)
T ss_pred             CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence            47899 9999999998 999999999988      8877655421                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++--..   ++.  .+++|+|++|+|++-
T Consensus       214 AvG~p~---~i~--~~~vk~gavVIDvGi  237 (287)
T PRK14176        214 ATGVKH---LIK--ADMVKEGAVIFDVGI  237 (287)
T ss_pred             ccCCcc---ccC--HHHcCCCcEEEEecc
Confidence            775322   333  236899999999873

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.76  E-value=0.0042  Score=57.12  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=52.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc----------ccHHHHHHCCceec--CCCcCCHH
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE--NGTLGDIY  173 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~--~~~~~~~~  173 (313)
                      .+|+| ++|+|.|+|++|..+|+.|.+.      |..++...+.+.          +..+...+.+-...  .....+.+
T Consensus        19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~   91 (217)
T cd05211          19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE   91 (217)
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence            57899 9999999999999999999998      987666556554          44444443332210  00011112


Q ss_pred             hhh-ccCCEEEEcccchhH
Q 021356          174 ETI-SGSDLVLLLISDAAQ  191 (313)
Q Consensus       174 e~i-~~ADvIiLavP~~a~  191 (313)
                      +++ .+||+++.|.+.+.+
T Consensus        92 ~l~~~~~DVlipaA~~~~i  110 (217)
T cd05211          92 AILGLDVDIFAPCALGNVI  110 (217)
T ss_pred             cceeccccEEeeccccCcc
Confidence            222 389999999887654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.76  E-value=0.014  Score=56.53  Aligned_cols=66  Identities=24%  Similarity=0.201  Sum_probs=41.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH----H---CC--ceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---AG--FTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~---~G--~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||.|.||.++|..+...      |+ ++++.+...+.....+.    .   .+  ...  ....+. +.+++||+
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I--~~~~d~-~~l~~aDi   77 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKV--IGTNNY-EDIAGSDV   77 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEE--EECCCH-HHhCCCCE
Confidence            7999999999999999998877      75 65444433221111111    1   11  111  012355 57899999


Q ss_pred             EEEcc
Q 021356          182 VLLLI  186 (313)
Q Consensus       182 IiLav  186 (313)
                      ||++.
T Consensus        78 VI~ta   82 (321)
T PTZ00082         78 VIVTA   82 (321)
T ss_pred             EEECC
Confidence            99966

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.75  E-value=0.0034  Score=61.58  Aligned_cols=164  Identities=15%  Similarity=0.131  Sum_probs=92.3

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHh-chhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      .+|+| ++|.|+|. |.||..+++.|.. .      |. ++++..|...+....+.+.+..    ...++++++.++|+|
T Consensus       151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV  219 (340)
T PRK14982        151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV  219 (340)
T ss_pred             cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence            47999 99999998 8999999999974 4      43 5666665533333334443211    134778899999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEE----eccCCCc----------hhHHHH
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIA----VCPKGMG----------PSVRRL  247 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv-~l~~~~~~~~~l~~~i~vV~----vhPn~pg----------~~~r~l  247 (313)
                      +.++...... +++.  ..++++.+++|.+=- .+..  .  .. .+++.++.    .+|-...          ...|..
T Consensus       220 v~~ts~~~~~-~I~~--~~l~~~~~viDiAvPRDVd~--~--v~-~~~V~v~~gG~V~~p~~vd~~l~~~v~~~~~~r~~  291 (340)
T PRK14982        220 VWVASMPKGV-EIDP--ETLKKPCLMIDGGYPKNLDT--K--VQ-GPGIHVLKGGIVEHSLDIDWKIMEIAEMDNPQRQM  291 (340)
T ss_pred             EECCcCCcCC-cCCH--HHhCCCeEEEEecCCCCCCc--c--cC-CCCEEEEeCCccccCCCcCccHHHHHhccchhhHH
Confidence            9888643211 1221  234788899988622 1110  0  01 13444433    2231111          111111


Q ss_pred             HHhccc---ccCCCceEEEEeccC-CCHHHHHHHHHHHHHcCCCc
Q 021356          248 YVQGKE---INGAGINSSFAVHQD-VDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       248 f~~G~e---~~g~G~~~iitp~~d-~~~ea~e~a~~L~~alG~~~  288 (313)
                      |..--|   --.+|..--|+-..+ .+-+.++.+.+++..-|++-
T Consensus       292 ~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~kHGf~~  336 (340)
T PRK14982        292 FACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASVKHGFSP  336 (340)
T ss_pred             HHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHHHcCCcc
Confidence            110000   001233333555555 67888899999999999753

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.75  E-value=0.0045  Score=59.28  Aligned_cols=76  Identities=16%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-+ ..|..+|..|.+.      |..|.+....                   +.++.+.+++||+||.
T Consensus       153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~  206 (281)
T PRK14183        153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV  206 (281)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence            47899 999999988 8999999999888      8776544211                   1266788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       207 AvGkp~---~i~--~~~vk~gavvIDvG  229 (281)
T PRK14183        207 GVGKPN---LIT--EDMVKEGAIVIDIG  229 (281)
T ss_pred             ecCccc---ccC--HHHcCCCcEEEEee
Confidence            997543   333  24578999999986

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0073  Score=55.63  Aligned_cols=82  Identities=18%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCc--eecCCC-cCCHHhh-hccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGF--TEENGT-LGDIYET-ISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~--~~~~~~-~~~~~e~-i~~ADvIiLav  186 (313)
                      |+|.|||+|.+|.++|+.|.+.      |++|++.++..+...+.+. +.+.  +..+.+ ...+.++ +.++|+++.++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            6899999999999999999999      9998766665443333122 2332  211111 1123344 67889999999


Q ss_pred             cchhHHHHHHHHH
Q 021356          187 SDAAQADNYEKIF  199 (313)
Q Consensus       187 P~~a~~~vi~ei~  199 (313)
                      ..+.+.-++-.+.
T Consensus        75 ~~d~~N~i~~~la   87 (225)
T COG0569          75 GNDEVNSVLALLA   87 (225)
T ss_pred             CCCHHHHHHHHHH
Confidence            9988777665444

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=96.68  E-value=0.0095  Score=58.35  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=57.0

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhhhcc
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYETISG  178 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~~---~~~~~~e~i~~  178 (313)
                      |||+|+|.||..+++.+.+.     .+++++...+.+++.. ..|...|+..-           +.   ...++++++.+
T Consensus         1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~   75 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK   75 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence            68999999999999998754     2677665555443321 33333332110           00   02368899999


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +|+|+.|+|......-.+ ....++++++++
T Consensus        76 vDiVve~Tp~~~~~~na~-~~~~~GakaVl~  105 (333)
T TIGR01546        76 VDIVVDATPGGIGAKNKP-LYEKAGVKAIFQ  105 (333)
T ss_pred             CCEEEECCCCCCChhhHH-HHHhCCcCEEEE
Confidence            999999999876644333 334466666654

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.67  E-value=0.0058  Score=59.00  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..++..|.+.      |..|.+.-.+                   +.++++.+++||+||.
T Consensus       154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs  207 (297)
T PRK14186        154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA  207 (297)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999955 7899999999988      8877554221                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++.-..   ++.  .+++|+|++|+|++-
T Consensus       208 AvGkp~---~i~--~~~ik~gavVIDvGi  231 (297)
T PRK14186        208 AAGRPN---LIG--AEMVKPGAVVVDVGI  231 (297)
T ss_pred             ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence            998543   343  346799999999873

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.67  E-value=0.0057  Score=58.70  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=59.2

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| |++.|||-+ .+|..++..|.+.      +..|.+...+                   +.++.+.+++||+||.
T Consensus       153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~  206 (284)
T PRK14170        153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV  206 (284)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            37999 999999966 7899999999888      8776554221                   2367888999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       207 AvG~~~---~i~--~~~vk~GavVIDvG  229 (284)
T PRK14170        207 ATGLAK---FVK--KDYIKPGAIVIDVG  229 (284)
T ss_pred             ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence            998544   333  24578999999986

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.67  E-value=0.0069  Score=52.87  Aligned_cols=84  Identities=17%  Similarity=0.135  Sum_probs=56.9

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .-+|+| ++|.|||.|.+|...++.|.+.      |.+|.+....  ... ...+.+ +......+ . ++-+.++|+|+
T Consensus         8 ~l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~-~l~~l~~i~~~~~~~-~-~~dl~~a~lVi   75 (157)
T PRK06719          8 MFNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICK-EMKELPYITWKQKTF-S-NDDIKDAHLIY   75 (157)
T ss_pred             EEEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCH-HHHhccCcEEEeccc-C-hhcCCCceEEE
Confidence            369999 9999999999999999999998      9887666322  112 222222 11101111 1 23478999999


Q ss_pred             EcccchhHHHHHHHHHh
Q 021356          184 LLISDAAQADNYEKIFS  200 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~  200 (313)
                      .++.+.+....+.+...
T Consensus        76 aaT~d~e~N~~i~~~a~   92 (157)
T PRK06719         76 AATNQHAVNMMVKQAAH   92 (157)
T ss_pred             ECCCCHHHHHHHHHHHH
Confidence            99999887776655443

>PRK10206 putative oxidoreductase; Provisional

Probab=96.66  E-value=0.0096  Score=57.89  Aligned_cols=82  Identities=12%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|||||+|.+++- .+..+....    .+.++....+++.+..+.+.+.+...   ...+.+|+++  +.|+|++++|+
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~   74 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA   74 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence            58999999998753 345443320    14566544555443334455555321   2468999995  57999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.++..+.+.
T Consensus        75 ~~H~~~~~~al~   86 (344)
T PRK10206         75 DSHFEYAKRALE   86 (344)
T ss_pred             hHHHHHHHHHHH
Confidence            999887765543

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.66  E-value=0.0089  Score=56.90  Aligned_cols=66  Identities=29%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH---HCC-ceecC---CCcCCHHhhhccCCEEEEc
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG-FTEEN---GTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G-~~~~~---~~~~~~~e~i~~ADvIiLa  185 (313)
                      |+|||.|.||..+|..+...      |+ +|++.+...+.....+.   ... .....   ....+ .+.+++||+||++
T Consensus         1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit   73 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence            68999999999999998876      65 76666544322111111   110 00000   01134 4568999999997


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      .
T Consensus        74 ~   74 (300)
T cd01339          74 A   74 (300)
T ss_pred             c
Confidence            7

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=96.66  E-value=0.0056  Score=58.63  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| +++.|||-+ ..|..+++.|...      +..|.+....                   +.++.+.+++||+|+.
T Consensus       152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~  205 (283)
T COG0190         152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV  205 (283)
T ss_pred             CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence            47899 999999988 5689999999988      8877654322                   1267788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++--..   ++.  .+++|+|++|+|++-
T Consensus       206 AvG~p~---~i~--~d~vk~gavVIDVGi  229 (283)
T COG0190         206 AVGKPH---FIK--ADMVKPGAVVIDVGI  229 (283)
T ss_pred             ecCCcc---ccc--cccccCCCEEEecCC
Confidence            997543   233  567899999999974

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=96.66  E-value=0.0057  Score=59.07  Aligned_cols=76  Identities=18%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-+ .+|..++..|.+.      |..|.+...+                   +.++++.+++||+||.
T Consensus       163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~  216 (299)
T PLN02516        163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA  216 (299)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47999 999999966 7899999999888      8777655221                   2367889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-.   .++.  .+++|+|++|+|++
T Consensus       217 AvGk~---~~i~--~~~vk~gavVIDvG  239 (299)
T PLN02516        217 AAGQA---MMIK--GDWIKPGAAVIDVG  239 (299)
T ss_pred             cCCCc---CccC--HHHcCCCCEEEEee
Confidence            99753   3444  24679999999987

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.65  E-value=0.0061  Score=58.57  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-+ .+|..++..|.+.      +..|.+...+                   +.++++.+++||+||.
T Consensus       151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs  204 (287)
T PRK14173        151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV  204 (287)
T ss_pred             CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999955 8899999999887      7776544321                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       205 AvGkp~---~i~--~~~vk~GavVIDVG  227 (287)
T PRK14173        205 AVGRPH---LIT--PEMVRPGAVVVDVG  227 (287)
T ss_pred             ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence            997543   343  35679999999986

>PRK04148 hypothetical protein; Provisional

Probab=96.65  E-value=0.022  Score=48.94  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee-cCCCcCCHHhhhccCCEEEEcc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .++ ++|.+||+| -|.++|+.|.+.      |++| ++.|.++...+.+++.+... .++.+....+.-+++|+|--.=
T Consensus        15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~V-iaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148         15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDV-IVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             ccC-CEEEEEEec-CCHHHHHHHHHC------CCEE-EEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            367 899999999 899999999998      9986 56677666677777776421 1233345567889999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ||.+...-+-+++..++-+-++.-.+|
T Consensus        86 pp~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         86 PPRDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            998887777777777766666654444

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.63  E-value=0.0066  Score=58.26  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..++..|.+.      |..|.+...+                   +.++.+.+++||+||.
T Consensus       155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs  208 (284)
T PRK14177        155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG  208 (284)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999955 8899999999988      8777654321                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       209 AvGk~~---~i~--~~~ik~gavVIDvG  231 (284)
T PRK14177        209 AVGKPE---FIK--ADWISEGAVLLDAG  231 (284)
T ss_pred             eCCCcC---ccC--HHHcCCCCEEEEec
Confidence            997543   333  35679999999986

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.62  E-value=0.0098  Score=59.47  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=60.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc---------------HHHHHHCCcee-cCCCcCCHHhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---------------FAEARAAGFTE-ENGTLGDIYET  175 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s---------------~~~A~~~G~~~-~~~~~~~~~e~  175 (313)
                      |+|.|||.|-.|-..+..|.+.      |++|+.. +.++.-               ++...+.+... +-..+++.+++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a   73 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEA   73 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHH
Confidence            7899999999999999999999      9987554 433211               11111111110 00014578889


Q ss_pred             hccCCEEEEcccch---------hHH-HHHHHHHhcCCCCcEEEE
Q 021356          176 ISGSDLVLLLISDA---------AQA-DNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       176 i~~ADvIiLavP~~---------a~~-~vi~ei~~~mk~gaiLid  210 (313)
                      ++++|+++|++|-.         .+. .+.+++.++++..++|+.
T Consensus        74 ~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~  118 (414)
T COG1004          74 VKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI  118 (414)
T ss_pred             HhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            99999999998632         122 255688898887776654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.62  E-value=0.0067  Score=58.06  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..++..|.+.      |..|.+...+                   +.++.+.+++||+||.
T Consensus       154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs  207 (278)
T PRK14172        154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV  207 (278)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999955 8899999999988      8877554321                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       208 AvGkp~---~i~--~~~ik~gavVIDvG  230 (278)
T PRK14172        208 AIGRPK---FID--EEYVKEGAIVIDVG  230 (278)
T ss_pred             cCCCcC---ccC--HHHcCCCcEEEEee
Confidence            998544   333  24578999999985

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.61  E-value=0.0081  Score=48.52  Aligned_cols=78  Identities=18%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      -+|+| +++.|||.|.+|..=++.|.+.      |.+|.+.....   .......-+..     ...++.+.++|+|+++
T Consensus         3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~---~~~~~~i~~~~-----~~~~~~l~~~~lV~~a   67 (103)
T PF13241_consen    3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI---EFSEGLIQLIR-----REFEEDLDGADLVFAA   67 (103)
T ss_dssp             E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE---HHHHTSCEEEE-----SS-GGGCTTESEEEE-
T ss_pred             EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch---hhhhhHHHHHh-----hhHHHHHhhheEEEec
Confidence            46899 9999999999999999999999      98877665442   11111112332     2445678999999999


Q ss_pred             ccchhHHHHHHHH
Q 021356          186 ISDAAQADNYEKI  198 (313)
Q Consensus       186 vP~~a~~~vi~ei  198 (313)
                      +.+....+.+.+.
T Consensus        68 t~d~~~n~~i~~~   80 (103)
T PF13241_consen   68 TDDPELNEAIYAD   80 (103)
T ss_dssp             SS-HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9998776654433

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.60  E-value=0.0041  Score=61.74  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-----CceecCCCcCCHHhhhccCCEEE
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      +.++++|||.|.|+..+.+.+....    ..+ +|.++.|..++..+.+.+.     |+.+ -..+.+.++++++||+|+
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~-v~~~~s~~eav~~ADIVv  228 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITN-VEVVDSIEEVVRGSDIVT  228 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCce-EEEeCCHHHHHcCCCEEE
Confidence            4489999999999999999987741    124 5666666644333322221     3210 012468999999999999


Q ss_pred             EcccchhH----HHHHHHHHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQ----ADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~----~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      .+|+-...    ..+++  .+++|||+.|.-.+.
T Consensus       229 taT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~  260 (379)
T PRK06199        229 YCNSGETGDPSTYPYVK--REWVKPGAFLLMPAA  260 (379)
T ss_pred             EccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence            99974321    12443  235688987764443

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.58  E-value=0.0072  Score=57.93  Aligned_cols=77  Identities=13%  Similarity=0.177  Sum_probs=59.7

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-+ .+|..+|..|.+.      |..|.+...+                   +.++.+.+++||+||.
T Consensus       152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~  205 (282)
T PRK14169        152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV  205 (282)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999965 7899999999888      8777654321                   2267788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++.-..   ++.  .+++|+|++|+|++-
T Consensus       206 AvG~p~---~i~--~~~vk~GavVIDvGi  229 (282)
T PRK14169        206 AVGVPH---FIG--ADAVKPGAVVIDVGI  229 (282)
T ss_pred             ccCCcC---ccC--HHHcCCCcEEEEeec
Confidence            998544   333  246799999999873

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.58  E-value=0.018  Score=47.76  Aligned_cols=85  Identities=16%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             CEEEEEc----ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG----~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+|+|||    -+..|.-+.++|++.      |++|+-.+.+..+      -.|...    ..++.|.-...|++++++|
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~   64 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP   64 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence            6899999    788999999999998      9886544433211      134442    5678874489999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +....++++++... ..+.+++..+.
T Consensus        65 ~~~~~~~v~~~~~~-g~~~v~~~~g~   89 (116)
T PF13380_consen   65 PDKVPEIVDEAAAL-GVKAVWLQPGA   89 (116)
T ss_dssp             HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred             HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence            99999999987654 34455555553

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.53  E-value=0.0081  Score=57.66  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||-+ .+|..+|..|.+.      +..|.+...+                   ..++.+.+++||+||.
T Consensus       154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~  207 (284)
T PRK14190        154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV  207 (284)
T ss_pred             CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence            47899 999999954 8999999999887      8777654211                   2267789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       208 AvG~p~---~i~--~~~ik~gavVIDvG  230 (284)
T PRK14190        208 AVGKPK---LIT--ADMVKEGAVVIDVG  230 (284)
T ss_pred             ecCCCC---cCC--HHHcCCCCEEEEee
Confidence            996443   343  23468999999986

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.51  E-value=0.0085  Score=57.45  Aligned_cols=76  Identities=18%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||-+ .+|..+|..|.+.      +..|.+...+                   +.++.+.+++||+||.
T Consensus       153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs  206 (282)
T PRK14166        153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV  206 (282)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            37899 999999965 7899999999887      7776544321                   2267788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       207 AvGkp~---~i~--~~~vk~GavVIDvG  229 (282)
T PRK14166        207 AAGCVN---LLR--SDMVKEGVIVVDVG  229 (282)
T ss_pred             cCCCcC---ccC--HHHcCCCCEEEEec
Confidence            997543   333  24578999999986

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.48  E-value=0.013  Score=56.66  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=44.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCCEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      .| +||+|||.|.+|.++|..|...      |+  ++.+.+.........+.+..    +........+..+.+++||+|
T Consensus         5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adiv   77 (315)
T PRK00066          5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLV   77 (315)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEE
Confidence            56 8999999999999999999888      76  55555543332222222211    000000011234568999999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      |++.-
T Consensus        78 Iitag   82 (315)
T PRK00066         78 VITAG   82 (315)
T ss_pred             EEecC
Confidence            99653

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.46  E-value=0.0098  Score=57.04  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-+ .+|..++..|.+.      |..|.+...+                   +.++.+.+++||+||.
T Consensus       154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs  207 (282)
T PRK14180        154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV  207 (282)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence            37999 999999965 7899999999888      8777554321                   1267788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       208 AvGkp~---~i~--~~~vk~gavVIDvG  230 (282)
T PRK14180        208 AVGKPN---FIT--ADMVKEGAVVIDVG  230 (282)
T ss_pred             ccCCcC---cCC--HHHcCCCcEEEEec
Confidence            998544   343  25678999999986

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.46  E-value=0.0095  Score=57.29  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| |++.|||-+ .+|..++..|.+.      +..|.+...+                   ..++.+.+++||+||.
T Consensus       155 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~  208 (288)
T PRK14171        155 PNLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVA  208 (288)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            37899 999999965 7899999999888      8776554321                   2367888999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-.   +++.  .+++|+|++|+|++
T Consensus       209 AvGkp---~~i~--~~~vk~GavVIDvG  231 (288)
T PRK14171        209 AIGSP---LKLT--AEYFNPESIVIDVG  231 (288)
T ss_pred             ccCCC---CccC--HHHcCCCCEEEEee
Confidence            99743   2343  24578999999986

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.46  E-value=0.0094  Score=57.47  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| |++.|||-+ .+|..++..|.+.      +..|.+...+                   +.++.+.+++||+||.
T Consensus       156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs  209 (294)
T PRK14187        156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA  209 (294)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47999 999999965 8899999999988      8776544321                   2267789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       210 AvGkp~---~i~--~~~ik~gaiVIDVG  232 (294)
T PRK14187        210 AVGIPN---FVK--YSWIKKGAIVIDVG  232 (294)
T ss_pred             ccCCcC---ccC--HHHcCCCCEEEEec
Confidence            998543   233  24578999999985

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.45  E-value=0.0082  Score=59.36  Aligned_cols=76  Identities=18%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..++..|.+.      +..|.+.-.+                   +.++.+.+++||+||.
T Consensus       227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs  280 (364)
T PLN02616        227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS  280 (364)
T ss_pred             CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999955 7899999999888      7776554221                   2367889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       281 AvGkp~---~i~--~d~vK~GAvVIDVG  303 (364)
T PLN02616        281 AVGQPN---MVR--GSWIKPGAVVIDVG  303 (364)
T ss_pred             cCCCcC---cCC--HHHcCCCCEEEecc
Confidence            997543   333  24579999999986

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.44  E-value=0.0049  Score=55.97  Aligned_cols=81  Identities=11%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~~  189 (313)
                      .+|+|||+|.+|..+++.+...    ..|++++...+.++...... -.|+..  ....++++++++  .|.|++++|..
T Consensus        85 ~rV~IIGaG~iG~~l~~~~~~~----~~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~  157 (213)
T PRK05472         85 WNVALVGAGNLGRALLNYNGFE----KRGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE  157 (213)
T ss_pred             cEEEEECCCHHHHHHHHhhhcc----cCCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence            7899999999999999864321    12777665555543211100 123211  113356777754  99999999999


Q ss_pred             hHHHHHHHHH
Q 021356          190 AQADNYEKIF  199 (313)
Q Consensus       190 a~~~vi~ei~  199 (313)
                      ...++.+.+.
T Consensus       158 ~~~~i~~~l~  167 (213)
T PRK05472        158 AAQEVADRLV  167 (213)
T ss_pred             hHHHHHHHHH
Confidence            8877666544

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.44  E-value=0.015  Score=60.87  Aligned_cols=91  Identities=14%  Similarity=0.247  Sum_probs=60.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADvIiLavP  187 (313)
                      ..|-|+|+|.+|+.+++.|++.      |+++++ .+++++..+.+++.|...--+...+.+-    =+++||+|+++++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvv-ID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~  473 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMAN------KMRITV-LERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN  473 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhC------CCCEEE-EECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence            5789999999999999999998      988654 4556666777888885321122223321    2578999999999


Q ss_pred             chhHHHHHHHHHhcCCCC-cEEE
Q 021356          188 DAAQADNYEKIFSCMKPN-SILG  209 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~g-aiLi  209 (313)
                      +......+-.....+.|+ .++.
T Consensus       474 d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        474 EPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEE
Confidence            987765443333333343 3443

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.43  E-value=0.011  Score=56.81  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| |++.|||-+ .+|..++..|.+.      +..|.+...+                   +.++.+.+++||+||.
T Consensus       153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~  206 (282)
T PRK14182        153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA  206 (282)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999965 8899999999887      7776554221                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-.   +++.  .+++|+|++|+|++
T Consensus       207 AvGk~---~~i~--~~~ik~gaiVIDvG  229 (282)
T PRK14182        207 AIGKA---ELVK--GAWVKEGAVVIDVG  229 (282)
T ss_pred             ecCCc---CccC--HHHcCCCCEEEEee
Confidence            99742   3444  24578999999986

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.42  E-value=0.0071  Score=57.43  Aligned_cols=77  Identities=13%  Similarity=0.036  Sum_probs=53.9

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~i~~ADvI  182 (313)
                      +++| +++.|||.|-+|.+++..|.+.      |. ++.+.+|..++..+.+.+.+....-...   .+..+.+.++|+|
T Consensus       122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence            5788 9999999999999999999998      87 5778887755555555443211000001   1233567889999


Q ss_pred             EEcccchh
Q 021356          183 LLLISDAA  190 (313)
Q Consensus       183 iLavP~~a  190 (313)
                      |-++|...
T Consensus       195 InaTp~g~  202 (282)
T TIGR01809       195 VSTVPADV  202 (282)
T ss_pred             EECCCCCC
Confidence            99999764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.41  E-value=0.01  Score=56.97  Aligned_cols=76  Identities=17%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHh--chhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~--~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      .+|+| +++.|||-+ .+|..++..|.+  .      +..|.+...+                   +.++.+.+++||+|
T Consensus       154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv  207 (284)
T PRK14193        154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII  207 (284)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence            47899 999999955 889999999976  5      6666544221                   23678899999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |.++.-..   ++.  .+++|+|++|+|++
T Consensus       208 V~AvGkp~---~i~--~~~ik~GavVIDvG  232 (284)
T PRK14193        208 VAAAGVAH---LVT--ADMVKPGAAVLDVG  232 (284)
T ss_pred             EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence            99998543   343  24679999999986

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=96.39  E-value=0.01  Score=58.43  Aligned_cols=76  Identities=18%  Similarity=0.092  Sum_probs=58.6

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..+|..|.+.      +..|.+.-.+                   +.++.+.+++||+||.
T Consensus       210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs  263 (345)
T PLN02897        210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA  263 (345)
T ss_pred             CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence            47999 999999965 7899999999887      7776544321                   1267788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       264 AvGkp~---~v~--~d~vk~GavVIDVG  286 (345)
T PLN02897        264 AAGIPN---LVR--GSWLKPGAVVIDVG  286 (345)
T ss_pred             ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence            998543   233  24578999999986

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.37  E-value=0.012  Score=58.43  Aligned_cols=68  Identities=21%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|.|||+|.+|.|+|+.|++.      |++|...+ .+......   .+..++ ......+...+++|+||.+.+...
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D-~~~~~~~~---~~~~~~-~~~~~~~~~~~~~dlvV~s~gi~~   71 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVD-KSLEALQS---CPYIHE-RYLENAEEFPEQVDLVVRSPGIKK   71 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHC------CCEEEEEe-CCccccch---hHHHhh-hhcCCcHHHhcCCCEEEECCCCCC
Confidence            8999999999999999999999      98865444 43322211   111110 001133344578999999876543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.32  E-value=0.02  Score=59.10  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADv  181 (313)
                      .++++  .|-|+|+|.+|..+++.|++.      |+++++.+ ++++..+.+++.|+..-.+...+.+-    -++++|.
T Consensus       414 ~~~~~--hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~  484 (558)
T PRK10669        414 VDICN--HALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARW  484 (558)
T ss_pred             cccCC--CEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence            34444  678999999999999999999      98875554 55566677777775321122223221    2468999


Q ss_pred             EEEcccchhHHH
Q 021356          182 VLLLISDAAQAD  193 (313)
Q Consensus       182 IiLavP~~a~~~  193 (313)
                      ++++++++....
T Consensus       485 viv~~~~~~~~~  496 (558)
T PRK10669        485 LLLTIPNGYEAG  496 (558)
T ss_pred             EEEEcCChHHHH
Confidence            999999876543

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.32  E-value=0.0081  Score=57.71  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=57.1

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHh----chhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~----~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      .+++| |++.|||-+ .+|..++..|.+    .      +..|.+...+                   ..++.+.+++||
T Consensus       153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD  206 (286)
T PRK14184        153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD  206 (286)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence            47899 999999965 789999999987    4      5566544321                   126778999999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +||.++.-..   ++.  .+++|+|++|+|++
T Consensus       207 IVI~AvG~p~---li~--~~~vk~GavVIDVG  233 (286)
T PRK14184        207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG  233 (286)
T ss_pred             EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence            9999996432   343  13459999999986

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.29  E-value=0.021  Score=53.22  Aligned_cols=65  Identities=28%  Similarity=0.324  Sum_probs=41.3

Q ss_pred             EEEEcc-cchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHH------C--CceecCCCcCCHHhhhccCC
Q 021356          114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       114 IgIIG~-G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~~~~~~~~~e~i~~AD  180 (313)
                      |+|||. |.+|..++..|...      |    .++.+.+.........+.+      .  ....  ....+.++.+++||
T Consensus         1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD   72 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD   72 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence            689999 99999999999887      6    4665555433222111111      1  1111  01235578999999


Q ss_pred             EEEEcc
Q 021356          181 LVLLLI  186 (313)
Q Consensus       181 vIiLav  186 (313)
                      +|+++.
T Consensus        73 iVv~t~   78 (263)
T cd00650          73 VVIITA   78 (263)
T ss_pred             EEEECC
Confidence            999955

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.26  E-value=0.04  Score=50.17  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=54.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      -+|.| +++.|||.|.+|..-++.|.+.      |.+|.+....-.+......+.| +.-..+.. . .+.+.++|+|++
T Consensus         5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~   75 (205)
T TIGR01470         5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIA   75 (205)
T ss_pred             EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEE
Confidence            57999 9999999999999999999999      9887766544322232333333 22111111 2 345789999999


Q ss_pred             cccchhHHH
Q 021356          185 LISDAAQAD  193 (313)
Q Consensus       185 avP~~a~~~  193 (313)
                      ++.+.....
T Consensus        76 at~d~~ln~   84 (205)
T TIGR01470        76 ATDDEELNR   84 (205)
T ss_pred             CCCCHHHHH
Confidence            998876554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.011  Score=56.67  Aligned_cols=95  Identities=19%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc----eecCCCcCCHHhhhccCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF----TEENGTLGDIYETISGSD  180 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~----~~~~~~~~~~~e~i~~AD  180 (313)
                      .+.+| +++.|+|.|=.+.+++..|.+.      |. ++.+.+|..++..+.+...+-    .. .....+. +...++|
T Consensus       122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~-~~~~~~~-~~~~~~d  192 (283)
T COG0169         122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVE-AAALADL-EGLEEAD  192 (283)
T ss_pred             cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccc-ccccccc-ccccccC
Confidence            56678 9999999999999999999999      96 688899887666666655441    10 0001122 2222699


Q ss_pred             EEEEcccchhHHH----HHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQAD----NYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~----vi~ei~~~mk~gaiLid~  211 (313)
                      +||-+||......    .+.  ...++++.++.|+
T Consensus       193 liINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~  225 (283)
T COG0169         193 LLINATPVGMAGPEGDSPVP--AELLPKGAIVYDV  225 (283)
T ss_pred             EEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence            9999999876543    222  4567788888865

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.17  E-value=0.0082  Score=47.85  Aligned_cols=79  Identities=13%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~~  189 (313)
                      .++.|+|.|.+|.+++....+..     |+.+....+.+++... ..-.|+..    ..+++++.+.  .|+-+|++|..
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~-----g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~   73 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMR-----GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE   73 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHH-----CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHc-----CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence            57999999999999986655431     5544444443332111 01124442    3367776666  99999999999


Q ss_pred             hHHHHHHHHHh
Q 021356          190 AQADNYEKIFS  200 (313)
Q Consensus       190 a~~~vi~ei~~  200 (313)
                      ...+...++.+
T Consensus        74 ~a~~~~~~~~~   84 (96)
T PF02629_consen   74 AAQEVADELVE   84 (96)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876654

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=96.17  E-value=0.023  Score=53.29  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             HCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCchhhhhhh-cccCCCCCccEEEec
Q 021356          159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGHLQS-IGLDFPKNIGVIAVC  236 (313)
Q Consensus       159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~-~~~~l~~~i~vV~vh  236 (313)
                      +.|+..    .++..|+++++|+||-=.|-.. +.++++++.+.+++|+||++.+-+......+ ....-++++++-..|
T Consensus       124 d~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsyh  199 (343)
T COG4074         124 DMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYH  199 (343)
T ss_pred             HceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccC
Confidence            466664    4577899999999999888654 6789999999999999999988764321111 001225689999999


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL  284 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al  284 (313)
                      | +..+++     .|         -++..++.+++++++.+.+|.+.-
T Consensus       200 p-g~vpem-----kg---------qvyiaegyaseeavn~lyelg~ka  232 (343)
T COG4074         200 P-GTVPEM-----KG---------QVYIAEGYASEEAVNALYELGEKA  232 (343)
T ss_pred             C-CCCccc-----cC---------cEEEecccccHHHHHHHHHHHHHh
Confidence            9 556664     23         235667788999999887776543

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.15  E-value=0.017  Score=55.66  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=57.1

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      .+|+| |++.|||-+ .+|..++..|.+.      |    ..|.+...+                   ..++.+.+++||
T Consensus       153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD  206 (293)
T PRK14185        153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD  206 (293)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence            47899 999999965 7899999999775      4    344433211                   236788899999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +||.++.-..   ++.  .+++|+|++|+|++
T Consensus       207 IvIsAvGkp~---~i~--~~~vk~gavVIDvG  233 (293)
T PRK14185        207 IIIAALGQPE---FVK--ADMVKEGAVVIDVG  233 (293)
T ss_pred             EEEEccCCcC---ccC--HHHcCCCCEEEEec
Confidence            9999998544   333  35679999999986

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.12  E-value=0.052  Score=53.80  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhhccCCE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL  181 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~----e~i~~ADv  181 (313)
                      +.. ++|.|+|+|.+|..+++.|.+.      |+++++.... ++..+...+.  ++..-.+...+.+    .-++++|.
T Consensus       229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~  300 (453)
T PRK09496        229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA  300 (453)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence            445 8999999999999999999998      9887655544 4444444432  3211011222332    23578999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      |++++++....-++..+...+.+..++.-+
T Consensus       301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        301 FIALTNDDEANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             EEECCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence            999988765433333444445555555433

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.10  E-value=0.018  Score=55.61  Aligned_cols=80  Identities=20%  Similarity=0.194  Sum_probs=56.4

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| |++.|||-+ .+|..++..|.+.+..  .+..|.+....                   ..++++.+++||+||.
T Consensus       155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~  212 (295)
T PRK14174        155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIA  212 (295)
T ss_pred             CCCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence            47899 999999965 7899999998761100  05555443321                   1257789999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-.   .++.  .+++|+|++|+|++
T Consensus       213 Avg~~---~li~--~~~vk~GavVIDVg  235 (295)
T PRK14174        213 AIGKA---RFIT--ADMVKPGAVVIDVG  235 (295)
T ss_pred             ecCcc---CccC--HHHcCCCCEEEEee
Confidence            99544   3444  13359999999986

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.08  E-value=0.03  Score=58.95  Aligned_cols=87  Identities=15%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----e~i~~ADvIiLavP  187 (313)
                      ++|-|+|+|.+|+.+++.|++.      |+++++ .+.+++..+.+++.|+..-.+...+.+    .=+++||+|+++++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvv-ID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTV-LDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhC------CCCEEE-EECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence            6788999999999999999999      987654 455566677777777642222223332    13458999999999


Q ss_pred             chhHHHHHHHHHhcCCCC
Q 021356          188 DAAQADNYEKIFSCMKPN  205 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~g  205 (313)
                      +......+-.....+.|+
T Consensus       474 d~~~n~~i~~~ar~~~p~  491 (621)
T PRK03562        474 DPQTSLQLVELVKEHFPH  491 (621)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            877665443333333444

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.05  E-value=0.014  Score=54.02  Aligned_cols=86  Identities=15%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC----------CcccH-HHHHHCCceecC--CCcCCH
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----------GSRSF-AEARAAGFTEEN--GTLGDI  172 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~----------~~~s~-~~A~~~G~~~~~--~~~~~~  172 (313)
                      .+|.| ++|+|.|+|++|..+++.|.+.      |.+|+...+.          +...+ +...+.|-...-  ....+.
T Consensus        27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~   99 (227)
T cd01076          27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN   99 (227)
T ss_pred             CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence            67899 9999999999999999999998      9987634343          22222 222333321100  000122


Q ss_pred             Hhhh-ccCCEEEEcccchhHHH-HHHHH
Q 021356          173 YETI-SGSDLVLLLISDAAQAD-NYEKI  198 (313)
Q Consensus       173 ~e~i-~~ADvIiLavP~~a~~~-vi~ei  198 (313)
                      ++++ .+||+++-|.+.+.+.. .++++
T Consensus       100 ~~i~~~~~Dvlip~a~~~~i~~~~~~~l  127 (227)
T cd01076         100 EELLELDCDILIPAALENQITADNADRI  127 (227)
T ss_pred             ccceeecccEEEecCccCccCHHHHhhc
Confidence            2222 37899999987766543 44433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=96.04  E-value=0.048  Score=52.46  Aligned_cols=89  Identities=15%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLav  186 (313)
                      .+|.|.| .|.+|..+.++|+++      |+.+++...+.  ..     .-.|+..    ..++.|+-..  .|+.++++
T Consensus         9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~~-----~v~G~~~----y~sv~dlp~~~~~DlAvi~v   73 (291)
T PRK05678          9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGGT-----TVLGLPV----FNTVAEAVEATGANASVIYV   73 (291)
T ss_pred             CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCCC-----eEeCeec----cCCHHHHhhccCCCEEEEEc
Confidence            5788999 488999999999998      87644454443  11     1245553    5588887776  89999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      |.....+.+++... ..-..+++.++||.+
T Consensus        74 p~~~v~~~l~e~~~-~gvk~avI~s~Gf~~  102 (291)
T PRK05678         74 PPPFAADAILEAID-AGIDLIVCITEGIPV  102 (291)
T ss_pred             CHHHHHHHHHHHHH-CCCCEEEEECCCCCH
Confidence            99999999987665 233457888999864

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.01  E-value=0.07  Score=45.80  Aligned_cols=66  Identities=27%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             EEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEcccc
Q 021356          114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD  188 (313)
Q Consensus       114 IgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLavP~  188 (313)
                      |.|+|. |.+|..+++.|.+.      |++|+...|+.++..+   ..++..-.....+   +.++++++|.|+.++++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            679995 99999999999999      9998888877543322   3343221122333   35678899999999985

...

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.00  E-value=0.032  Score=50.55  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=59.3

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC--CcccHH--------------H--HH---H-CC
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--GSRSFA--------------E--AR---A-AG  161 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~--~~~s~~--------------~--A~---~-~G  161 (313)
                      ...|+. ++|+|||+|-||..+|..|...      |+ ++++.++.  ...++.              .  +.   + ..
T Consensus        16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp   88 (200)
T TIGR02354        16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP   88 (200)
T ss_pred             HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence            466778 9999999999999999999998      87 45544432  010000              0  00   0 00


Q ss_pred             ---cee--cCCCcCCHHhhhccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEecCc
Q 021356          162 ---FTE--ENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       162 ---~~~--~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~~Gv  214 (313)
                         +..  +.-+..+.++.++++|+|+-++-...... ++++....++...++. .+|+
T Consensus        89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~  146 (200)
T TIGR02354        89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL  146 (200)
T ss_pred             CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence               100  00001133457889999999953334443 4457777776544454 4554

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.93  E-value=0.05  Score=49.14  Aligned_cols=88  Identities=15%  Similarity=0.122  Sum_probs=53.7

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA----  160 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~----  160 (313)
                      ..-|.. ++|.|||+|-+|..++++|...      |. ++.+.++..                   .+....+.+.    
T Consensus        16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   88 (202)
T TIGR02356        16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN   88 (202)
T ss_pred             HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence            356778 9999999999999999999998      87 444444320                   0111111111    


Q ss_pred             -Ccee--cCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       161 -G~~~--~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                       .+..  .+...  .+.++.++++|+||.++.......++++..
T Consensus        89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~  132 (202)
T TIGR02356        89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC  132 (202)
T ss_pred             CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence             1100  00011  124567899999999986666555677654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=95.92  E-value=0.028  Score=54.60  Aligned_cols=69  Identities=13%  Similarity=0.053  Sum_probs=40.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcc--cHHHHHH--CCc-e-ecC-CCcCCHHhhh
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--AGF-T-EEN-GTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~--s~~~A~~--~G~-~-~~~-~~~~~~~e~i  176 (313)
                      +||+|||. |.+|.++|..|...      |+       ++.+.+.....  ....+.+  ... . ..+ ....+..+.+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~   76 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAF   76 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHh
Confidence            79999999 99999999998765      44       44444432211  1111111  110 0 000 0013456789


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      ++||+||++.
T Consensus        77 ~daDivvita   86 (322)
T cd01338          77 KDADWALLVG   86 (322)
T ss_pred             CCCCEEEEeC
Confidence            9999999975

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.91  E-value=0.018  Score=64.02  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhc---------CCcEEEEEecCCcccHHHHHHC-Cc--eecCCCcCCHHh--
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE--  174 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~~~~~~~e--  174 (313)
                      +.+++|+|||+|.||...++.|.+. .+..         .+..|.+++.......+.+... ++  +.-|  ..+.++  
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~  643 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL  643 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence            3348999999999999999999764 1000         0112555544322222233322 42  1101  234444  


Q ss_pred             -hhccCCEEEEcccchhHHHHHHH
Q 021356          175 -TISGSDLVLLLISDAAQADNYEK  197 (313)
Q Consensus       175 -~i~~ADvIiLavP~~a~~~vi~e  197 (313)
                       +++++|+|+.++|..-+..+...
T Consensus       644 ~~v~~~DaVIsalP~~~H~~VAka  667 (1042)
T PLN02819        644 KYVSQVDVVISLLPASCHAVVAKA  667 (1042)
T ss_pred             HhhcCCCEEEECCCchhhHHHHHH
Confidence             44689999999999877776653

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.87  E-value=0.053  Score=54.87  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++|+|||.    |++|..+.++|++.      |+  +| +...+...     .-.|+..    ..+++|+-...|+++++
T Consensus         8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v-~~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~   71 (447)
T TIGR02717         8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKI-YPVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV   71 (447)
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcE-EEECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence            89999999    88999999999998      77  44 34333221     1245542    45788887788999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +|+....+++++... ..-..+|+.++||.
T Consensus        72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~  100 (447)
T TIGR02717        72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK  100 (447)
T ss_pred             cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence            999999999998765 34456778888874

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.86  E-value=0.057  Score=48.56  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             EEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCc---CCHHhhhccCCEEEEcccc
Q 021356          114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTL---GDIYETISGSDLVLLLISD  188 (313)
Q Consensus       114 IgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~---~~~~e~i~~ADvIiLavP~  188 (313)
                      |.|+|. |.+|+++++.|.+.      +++|.+..|+... ..+..+..|+..-....   .++.++++++|.|+++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            689995 99999999999998      9998888887532 23344556754211222   2455689999999999993

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.85  E-value=0.04  Score=53.95  Aligned_cols=91  Identities=18%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCC-c-EEEEEecCCcccHHHHHH-C--CceecCCCcC---CHHhhhccCCEEEEc
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLG---DIYETISGSDLVLLL  185 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~~~~---~~~e~i~~ADvIiLa  185 (313)
                      |.|||.|.+|..+++.|.+.      + . +|+++.|+..+..+.+.+ .  .+....-...   ++.++++++|+||.|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC   74 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred             CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence            78999999999999999987      5 4 677777764433333321 1  1111000122   255789999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+.....+++....   .|.-.+|.+.
T Consensus        75 ~gp~~~~~v~~~~i~---~g~~yvD~~~   99 (386)
T PF03435_consen   75 AGPFFGEPVARACIE---AGVHYVDTSY   99 (386)
T ss_dssp             SSGGGHHHHHHHHHH---HT-EEEESS-
T ss_pred             CccchhHHHHHHHHH---hCCCeeccch
Confidence            999855556664333   3667788655

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.71  E-value=0.018  Score=57.74  Aligned_cols=74  Identities=19%  Similarity=0.148  Sum_probs=43.4

Q ss_pred             CEEEEEcccchHHHHHH--HHHhchhhhcCCcEEEEEecCCcccHHHHH--------HCCceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||.|++|.+.+.  .+....  +-.|.+|++.++. ++..+...        ..+....-....+..+++++||+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did-~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~   77 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDID-EERLETVEILAKKIVEELGAPLKIEATTDRREALDGADF   77 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence            47999999999998766  343110  1116676665543 32222111        11111000114577899999999


Q ss_pred             EEEcccc
Q 021356          182 VLLLISD  188 (313)
Q Consensus       182 IiLavP~  188 (313)
                      |+.+++.
T Consensus        78 Vi~ai~~   84 (423)
T cd05297          78 VINTIQV   84 (423)
T ss_pred             EEEeeEe
Confidence            9999995

linked to 3D####ucture

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.71  E-value=0.055  Score=52.70  Aligned_cols=69  Identities=16%  Similarity=0.045  Sum_probs=41.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcc--cHHHHHHC--Cc-ee-cC-CCcCCHHhhh
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARAA--GF-TE-EN-GTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~--s~~~A~~~--G~-~~-~~-~~~~~~~e~i  176 (313)
                      .||+|||. |.+|.++|..|...      ++       ++++.+.....  ....+.+.  .. .. .+ ....+..+.+
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~   77 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF   77 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence            68999998 99999999999876      54       45444443211  22222211  11 00 00 0013556889


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      ++||+||++-
T Consensus        78 ~daDvVVitA   87 (323)
T TIGR01759        78 KDVDAALLVG   87 (323)
T ss_pred             CCCCEEEEeC
Confidence            9999999965

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.68  E-value=0.038  Score=53.19  Aligned_cols=80  Identities=11%  Similarity=0.165  Sum_probs=56.6

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..++..|.+..+  ..+..|.+...+                   +.++.+.+++||+||.
T Consensus       149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~  206 (287)
T PRK14181        149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHP--DTNATVTLLHSQ-------------------SENLTEILKTADIIIA  206 (287)
T ss_pred             CCCCC-CEEEEECCCccchHHHHHHHHhCcC--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence            47899 999999965 789999999976500  002344432111                   2367889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       207 AvG~p~---~i~--~~~ik~GavVIDvG  229 (287)
T PRK14181        207 AIGVPL---FIK--EEMIAEKAVIVDVG  229 (287)
T ss_pred             ccCCcC---ccC--HHHcCCCCEEEEec
Confidence            997543   343  24578999999987

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.68  E-value=0.048  Score=54.80  Aligned_cols=71  Identities=23%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             ccccCCCCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++..++ ++|.|||+|..|.+ +|+.|++.      |++|.+.+.+..+..+...+.|+...   .....+.+.++|+||
T Consensus         2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv   71 (461)
T PRK00421          2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV   71 (461)
T ss_pred             CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence            355677 99999999999999 79999999      99986665443332333345576531   122345677899998


Q ss_pred             Ec
Q 021356          184 LL  185 (313)
Q Consensus       184 La  185 (313)
                      +.
T Consensus        72 ~s   73 (461)
T PRK00421         72 YS   73 (461)
T ss_pred             EC
Confidence            84

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.67  E-value=0.07  Score=51.91  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=56.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      .+|+||| .|-.|.-+.+.|.+.     +.+++.....+ +.         +.     ..+.+++++++|++++++|...
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~l~s~-~~---------~~-----~~~~~~~~~~~D~vFlalp~~~   61 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLSIAPD-RR---------KD-----AAERAKLLNAADVAILCLPDDA   61 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCC-----CCeEEEEEecc-cc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence            5899999 799999999999875     23444322211 11         21     1245677789999999999988


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCc
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ..++..++.   ..|+.|+|.++.
T Consensus        62 s~~~~~~~~---~~g~~VIDlSad   82 (310)
T TIGR01851        62 AREAVSLVD---NPNTCIIDASTA   82 (310)
T ss_pred             HHHHHHHHH---hCCCEEEECChH
Confidence            777777654   368889998864

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.64  E-value=0.049  Score=44.22  Aligned_cols=82  Identities=18%  Similarity=0.214  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HH
Q 021356          121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY  195 (313)
Q Consensus       121 ~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi  195 (313)
                      +-+-.+++.|++.      |.+|.+.+..- ... ....    .++..    ..++++.++++|+||++++-....+ -+
T Consensus        17 Sp~~~l~~~L~~~------g~~V~~~DP~v-~~~-~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~   84 (106)
T PF03720_consen   17 SPALELIEELKER------GAEVSVYDPYV-DEE-EIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW   84 (106)
T ss_dssp             -HHHHHHHHHHHT------T-EEEEE-TTS-HHH-HHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred             CHHHHHHHHHHHC------CCEEEEECCcc-ChH-HHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence            4456778888888      99876555432 222 2222    34543    4578999999999999999988887 56


Q ss_pred             HHHHhcCCCCcEEEEecCc
Q 021356          196 EKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       196 ~ei~~~mk~gaiLid~~Gv  214 (313)
                      +++...|+++.+|+|..++
T Consensus        85 ~~~~~~~~~~~~iiD~~~~  103 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDGRNI  103 (106)
T ss_dssp             HHHHHHSCSSEEEEESSST
T ss_pred             HHHHHhcCCCCEEEECccc
Confidence            7888889889999998875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.61  E-value=0.029  Score=53.67  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCc---ccHHHHHHCCceecC-CCcCC------HHh
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~~~-~~~~~------~~e  174 (313)
                      .+++| +++.|||.|-.+.+++..|...      |. ++.+.+|..+   +..+.+.+.+..... ....+      +.+
T Consensus       120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~  192 (288)
T PRK12749        120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE  192 (288)
T ss_pred             CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence            35788 9999999999999999999887      86 6777877632   333333332210000 00112      233


Q ss_pred             hhccCCEEEEcccchhHHH----HHHHHHhcCCCCcEEEEec
Q 021356          175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~----vi~ei~~~mk~gaiLid~~  212 (313)
                      .+.++|+||-++|......    .... ...++++.+|.|+-
T Consensus       193 ~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v  233 (288)
T PRK12749        193 ALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV  233 (288)
T ss_pred             hcccCCEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence            5678999999999865321    1111 12356777777653

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.60  E-value=0.053  Score=52.35  Aligned_cols=69  Identities=17%  Similarity=0.146  Sum_probs=41.4

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----cee-cCC-CcCCHHhhhccCCEEEE
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTE-ENG-TLGDIYETISGSDLVLL  184 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~-~~~-~~~~~~e~i~~ADvIiL  184 (313)
                      ||+|||.|.+|.++|..|...      +.  ++++.+.........+.+..    +.. .+. ......+.+++||+|++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi   74 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI   74 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence            689999999999999998877      65  45445443322222222211    110 000 01123577899999999


Q ss_pred             ccc
Q 021356          185 LIS  187 (313)
Q Consensus       185 avP  187 (313)
                      +.-
T Consensus        75 taG   77 (307)
T cd05290          75 TAG   77 (307)
T ss_pred             CCC
Confidence            763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.57  E-value=0.054  Score=53.28  Aligned_cols=92  Identities=16%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhhccCCEEEEc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETISGSDLVLLL  185 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~-~~~e~i~~ADvIiLa  185 (313)
                      -+| ++|+|+|.|-+|.--.|.+++.      |.+|+.. +++++..+.|++.|...- +.... ..+++-+.+|+|+.+
T Consensus       165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence            347 9999999998888888888888      9887554 444566778888885321 00101 122233339999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      ++ ..   .++...+.|+++-.++.+
T Consensus       237 v~-~~---~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         237 VG-PA---TLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             CC-hh---hHHHHHHHHhcCCEEEEE
Confidence            99 33   344444556665554433

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.55  E-value=0.029  Score=54.27  Aligned_cols=68  Identities=21%  Similarity=0.199  Sum_probs=41.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--C--ceec-CCC-cCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEE-NGT-LGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~-~~~-~~~~~e~i~~ADvIi  183 (313)
                      +||+|||.|.+|.++|..|...      |.  ++++.+.........+.+.  .  +... .-. ..+.+ .+++||+|+
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv   76 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI   76 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence            6999999999999999998877      65  4555544332222222211  1  1000 001 23555 489999999


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      ++.
T Consensus        77 ita   79 (312)
T cd05293          77 VTA   79 (312)
T ss_pred             ECC
Confidence            954

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=95.54  E-value=0.037  Score=54.43  Aligned_cols=64  Identities=9%  Similarity=0.028  Sum_probs=45.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|.| +++-|||.|.||.-.+++|++.      |. ++++.+|....     ...+-.     ....-+...++|+||.
T Consensus       170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs  232 (338)
T PRK00676        170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF  232 (338)
T ss_pred             CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence            56889 9999999999999999999999      86 57788876421     111000     0011144578999999


Q ss_pred             cc
Q 021356          185 LI  186 (313)
Q Consensus       185 av  186 (313)
                      ++
T Consensus       233 ~t  234 (338)
T PRK00676        233 GS  234 (338)
T ss_pred             cC
Confidence            74

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.53  E-value=0.073  Score=51.79  Aligned_cols=80  Identities=18%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      .+|+||| .|..|..+.+.|.+.     ..+++.....+...       . ..       +.++.++++|++|+|+|...
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~h-----p~~~l~~~~s~~~~-------~-~~-------~~~~~~~~~DvvFlalp~~~   62 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGR-----SDIELLSIPEAKRK-------D-AA-------ARRELLNAADVAILCLPDDA   62 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcC-----CCeEEEEEecCCCC-------c-cc-------CchhhhcCCCEEEECCCHHH
Confidence            6899999 899999999998876     13343322222111       0 11       33456678999999999988


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCc
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ..++..++.+   .|..|+|.++-
T Consensus        63 s~~~~~~~~~---~g~~VIDlSad   83 (313)
T PRK11863         63 AREAVALIDN---PATRVIDASTA   83 (313)
T ss_pred             HHHHHHHHHh---CCCEEEECChh
Confidence            7787777653   58889998763

>PRK05442 malate dehydrogenase; Provisional

Probab=95.49  E-value=0.053  Score=52.84  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=20.2

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhc
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDS  133 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~  133 (313)
                      .+||+|||. |.+|.++|..|...
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~   27 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASG   27 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhh
Confidence            379999998 99999999988764

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.44  E-value=0.047  Score=54.35  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecC-CCcCCHH-hhhccCCEEEEccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN-GTLGDIY-ETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~-~~~~~~~-e~i~~ADvIiLavP  187 (313)
                      ++|+||| .|..|..+.+.|.+.     ++.++....+..+.-....... .+...+ ....+.+ +.++++|+|++++|
T Consensus        39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp  113 (381)
T PLN02968         39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP  113 (381)
T ss_pred             cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence            7999999 599999999988765     2456554443321110001001 001000 0011222 22589999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .....++...+    +.|..|+|.++.
T Consensus       114 ~~~s~~i~~~~----~~g~~VIDlSs~  136 (381)
T PLN02968        114 HGTTQEIIKAL----PKDLKIVDLSAD  136 (381)
T ss_pred             HHHHHHHHHHH----hCCCEEEEcCch
Confidence            87666666653    457889988864

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.42  E-value=0.047  Score=52.80  Aligned_cols=80  Identities=11%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||-+ .+|..+|..|.+.-  +..+..|.+...+                   +.++++.+++||+||.
T Consensus       157 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs  214 (297)
T PRK14168        157 VETSG-AEVVVVGRSNIVGKPIANMMTQKG--PGANATVTIVHTR-------------------SKNLARHCQRADILIV  214 (297)
T ss_pred             CCCCC-CEEEEECCCCcccHHHHHHHHhcc--cCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence            47999 999999955 88999999997650  0002345443211                   2367788999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       215 AvGkp~---~i~--~~~ik~gavVIDvG  237 (297)
T PRK14168        215 AAGVPN---LVK--PEWIKPGATVIDVG  237 (297)
T ss_pred             ecCCcC---ccC--HHHcCCCCEEEecC
Confidence            986433   333  24578999999986

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=95.38  E-value=0.17  Score=44.18  Aligned_cols=71  Identities=20%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             CCCCEEEEEc--ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--c----cH----HHHHHCCceecCCCcCCHHhhh
Q 021356          109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--R----SF----AEARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       109 ~GikkIgIIG--~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~----s~----~~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      +| ++|++||  .+++..|++..+..+      |+++.+....+-  +    ..    +.+.+.|....  ...+++|++
T Consensus         1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~--~~~~~~e~l   71 (158)
T PF00185_consen    1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKIT--ITDDIEEAL   71 (158)
T ss_dssp             TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEE--EESSHHHHH
T ss_pred             CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeE--EEeCHHHhc
Confidence            57 9999999  389999999999999      998666654431  1    11    22233342110  145899999


Q ss_pred             ccCCEEEEcccc
Q 021356          177 SGSDLVLLLISD  188 (313)
Q Consensus       177 ~~ADvIiLavP~  188 (313)
                      +++|+|..-.-.
T Consensus        72 ~~aDvvy~~~~~   83 (158)
T PF00185_consen   72 KGADVVYTDRWQ   83 (158)
T ss_dssp             TT-SEEEEESSS
T ss_pred             CCCCEEEEcCcc
Confidence            999998887665

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.30  E-value=0.17  Score=48.92  Aligned_cols=71  Identities=17%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             cccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~i~~  178 (313)
                      ..++| .+|++||-|   ++..|++..+...      |+++.+...++-    ...+.+++.|...+  ...++++++++
T Consensus       146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~  216 (301)
T TIGR00670       146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDE  216 (301)
T ss_pred             CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCC
Confidence            45888 999999985   9999999999998      999877765432    22345555664321  14589999999


Q ss_pred             CCEEEEc
Q 021356          179 SDLVLLL  185 (313)
Q Consensus       179 ADvIiLa  185 (313)
                      ||+|...
T Consensus       217 aDvvyt~  223 (301)
T TIGR00670       217 ADVLYVT  223 (301)
T ss_pred             CCEEEEC
Confidence            9999874

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.29  E-value=0.048  Score=54.91  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhhccCCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      .-+.| ++|+|+|+|..|.++|+.|++.      |++|.+.++.....    .+...+.|+....+  ....+.+.++|+
T Consensus        10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl   80 (458)
T PRK01710         10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV   80 (458)
T ss_pred             hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence            55678 9999999999999999999999      99876665443211    12344567643111  122455688999


Q ss_pred             EEEc
Q 021356          182 VLLL  185 (313)
Q Consensus       182 IiLa  185 (313)
                      ||..
T Consensus        81 VV~S   84 (458)
T PRK01710         81 IFKT   84 (458)
T ss_pred             EEEC
Confidence            9886

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.28  E-value=0.09  Score=50.32  Aligned_cols=68  Identities=21%  Similarity=0.268  Sum_probs=40.9

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC-cee--cCC--CcCCHHhhhccCCEEEEcc
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG-FTE--ENG--TLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G-~~~--~~~--~~~~~~e~i~~ADvIiLav  186 (313)
                      |+|||.|.+|.++|..|...      |+  ++.+.+...+.....+.+.. ...  ...  ...+..+.+++||+||++.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita   74 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence            68999999999999999887      74  55555543332222222110 000  000  0112256899999999987


Q ss_pred             c
Q 021356          187 S  187 (313)
Q Consensus       187 P  187 (313)
                      .
T Consensus        75 g   75 (300)
T cd00300          75 G   75 (300)
T ss_pred             C
Confidence            5

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.27  E-value=0.12  Score=50.88  Aligned_cols=96  Identities=13%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhh-hccCCEEEE
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYET-ISGSDLVLL  184 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~-i~~ADvIiL  184 (313)
                      ++||+||| .|--|.-+.+.|...     +.+++.+...+.........    ..|..+-.-...+.+++ ..+||+|||
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl   76 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL   76 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence            47999999 788899888888764     24464444322111111111    11221100011233333 456999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+|...-.+++.++.+   +|..|+|.++-
T Consensus        77 alPhg~s~~~v~~l~~---~g~~VIDLSad  103 (349)
T COG0002          77 ALPHGVSAELVPELLE---AGCKVIDLSAD  103 (349)
T ss_pred             ecCchhHHHHHHHHHh---CCCeEEECCcc
Confidence            9999998888887764   35559998763

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=95.25  E-value=0.012  Score=58.46  Aligned_cols=99  Identities=18%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ..-..| .++|+||+|..|.++++..+.+      |..|+.++..-.+-.+.+.-.+++      .++.|++-++|-+.+
T Consensus       173 ~~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~S~  239 (435)
T KOG0067|consen  173 LARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVVIFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCVSL  239 (435)
T ss_pred             cccccc-cceeeeccccccceehhhhhcc------cceeeeecchhhhhhhhhccccee------cccchhhhhccceee
Confidence            345667 8999999999999999999999      987654433323333444333343      368888999999999


Q ss_pred             cccchhHHH-HHHH-HHhcCCCCcEEEE-ecCchh
Q 021356          185 LISDAAQAD-NYEK-IFSCMKPNSILGL-SHGFLL  216 (313)
Q Consensus       185 avP~~a~~~-vi~e-i~~~mk~gaiLid-~~Gv~l  216 (313)
                      +|......+ +++. -...|+.|+.+.. +.|..+
T Consensus       240 hc~~~~~~h~lin~~tikqm~qGaflvnta~gglv  274 (435)
T KOG0067|consen  240 HCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLV  274 (435)
T ss_pred             ecccCcccccccccccceeecccceEeeecccccC
Confidence            999999876 6663 4578999998875 456543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.24  E-value=0.1  Score=51.09  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=56.7

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC---------------------cccH---HHHHH
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA  159 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~  159 (313)
                      ...|+. ++|.|||+|-+|..+|+.|...      |+ ++.+.++..                     ++..   +...+
T Consensus        19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~   91 (338)
T PRK12475         19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK   91 (338)
T ss_pred             HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence            467888 9999999999999999999998      87 454444321                     0110   00011


Q ss_pred             --CCcee----cCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhc
Q 021356          160 --AGFTE----ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC  201 (313)
Q Consensus       160 --~G~~~----~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~  201 (313)
                        .++..    .+.+..+++++++++|+||.++-......+++++...
T Consensus        92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~  139 (338)
T PRK12475         92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK  139 (338)
T ss_pred             HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence              12211    0111124577899999999999665555577766543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.24  E-value=0.047  Score=51.96  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHH
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIY  173 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~~~~---~~~  173 (313)
                      ..++| +++.|+|.|-+|.+++..|.+.      |.+ |.+.+|..   ++..+.+.+.   +  .........   +.+
T Consensus       122 ~~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~  194 (289)
T PRK12548        122 VDVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLK  194 (289)
T ss_pred             CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHH
Confidence            35778 9999999999999999999988      885 77777764   2222222221   1  000000011   223


Q ss_pred             hhhccCCEEEEcccchhHHH----HHHHHHhcCCCCcEEEEe
Q 021356          174 ETISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       174 e~i~~ADvIiLavP~~a~~~----vi~ei~~~mk~gaiLid~  211 (313)
                      +.++++|+||-+||......    .+. -...++++.+|.|+
T Consensus       195 ~~~~~~DilINaTp~Gm~~~~~~~~~~-~~~~l~~~~~v~D~  235 (289)
T PRK12548        195 AEIASSDILVNATLVGMKPNDGETNIK-DTSVFRKDLVVADT  235 (289)
T ss_pred             hhhccCCEEEEeCCCCCCCCCCCCCCC-cHHhcCCCCEEEEe
Confidence            45678899999999764321    110 01335566666665

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=95.21  E-value=0.078  Score=51.54  Aligned_cols=75  Identities=11%  Similarity=0.043  Sum_probs=41.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhc-hhhhcCCcEEEEEecCCcccHHHHHHCCceec------C-CCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------N-GTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~------~-~~~~~~~e~i~~ADvI  182 (313)
                      .||+|||. |.+|.+++..|... +..-..+.++++.++........+....+.+-      + ....+..+.+++||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            58999998 99999999999875 00000023565555432211111111111100      0 0023556889999999


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      |++.
T Consensus        83 I~tA   86 (325)
T cd01336          83 ILVG   86 (325)
T ss_pred             EEeC
Confidence            9865

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=95.20  E-value=0.061  Score=52.35  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             EEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhhc
Q 021356          113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETIS  177 (313)
Q Consensus       113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~~-------~~~~~~~e~i~  177 (313)
                      +|+|||. |.+|.++|..|...      ++       ++++.+.........+......+-.       ....+..+.++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~   74 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT   74 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence            5899999 99999999999875      33       3444443222111111111111100       00124468899


Q ss_pred             cCCEEEEcc
Q 021356          178 GSDLVLLLI  186 (313)
Q Consensus       178 ~ADvIiLav  186 (313)
                      +||+||++.
T Consensus        75 ~aDiVVitA   83 (324)
T TIGR01758        75 DVDVAILVG   83 (324)
T ss_pred             CCCEEEEcC
Confidence            999999965

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.19  E-value=0.034  Score=54.36  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=46.9

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +-=+| .+++|+|+|.+|.+++++.|..      |..-|++.|.+++-.+.|++.|+++
T Consensus       189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence            34468 9999999999999999999999      9877899999999899999999985

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.15  E-value=0.046  Score=53.25  Aligned_cols=74  Identities=18%  Similarity=0.120  Sum_probs=44.8

Q ss_pred             ccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhh
Q 021356          105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYET  175 (313)
Q Consensus       105 ~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-G~~~~~~~~-~~~~e~  175 (313)
                      +..++. +||+|||. |.+|.++|..|...      +.  ++++.+..  .....+.+    . .....+.+. .+..+.
T Consensus         3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~   73 (321)
T PTZ00325          3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKA   73 (321)
T ss_pred             CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHH
Confidence            356777 99999999 99999999999865      43  55555442  11111111    0 111101111 122678


Q ss_pred             hccCCEEEEccc
Q 021356          176 ISGSDLVLLLIS  187 (313)
Q Consensus       176 i~~ADvIiLavP  187 (313)
                      +++||+|+++.-
T Consensus        74 l~gaDvVVitaG   85 (321)
T PTZ00325         74 LRGADLVLICAG   85 (321)
T ss_pred             hCCCCEEEECCC
Confidence            999999998763

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.062  Score=54.49  Aligned_cols=75  Identities=15%  Similarity=0.103  Sum_probs=50.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..+.+ ++|.|+|+|-.|.++|+.|++.      |.+|.+.+++.....+...+.|+....  .....+.+.++|+||..
T Consensus        11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S   81 (473)
T PRK00141         11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS   81 (473)
T ss_pred             ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence            45677 9999999999999999999999      997766554322222223445765311  11234556789999885


Q ss_pred             --ccch
Q 021356          186 --ISDA  189 (313)
Q Consensus       186 --vP~~  189 (313)
                        +|++
T Consensus        82 pgi~~~   87 (473)
T PRK00141         82 PGWRPD   87 (473)
T ss_pred             CCCCCC
Confidence              4543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.11  E-value=0.083  Score=51.36  Aligned_cols=90  Identities=14%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~~ADvIiLav  186 (313)
                      ++|+||| .|..|..+.+.|.+.      ++   ++....+..+...... -.|...   ...+. .+.++++|+||+++
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A~   71 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFSA   71 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEECC
Confidence            7999999 799999999999886      55   3333333221111110 011110   01111 13457999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |-....++.+++.   +.|+.|+|.++-
T Consensus        72 g~g~s~~~~~~~~---~~G~~VIDlS~~   96 (334)
T PRK14874         72 GGSVSKKYAPKAA---AAGAVVIDNSSA   96 (334)
T ss_pred             ChHHHHHHHHHHH---hCCCEEEECCch
Confidence            9887777777654   357888887763

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.12  Score=52.77  Aligned_cols=71  Identities=18%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..+.| +++.|+|+|..|.+.++.|++.      |.+|++.+++ ....+.+++.|+....  .....+.++++|+||..
T Consensus         8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S   77 (488)
T PRK03369          8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS   77 (488)
T ss_pred             cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence            45578 9999999999999999999999      9988765533 3333445556764311  11234567889999885


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      -
T Consensus        78 p   78 (488)
T PRK03369         78 P   78 (488)
T ss_pred             C
Confidence            4

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.01  E-value=0.41  Score=47.08  Aligned_cols=94  Identities=12%  Similarity=0.028  Sum_probs=56.3

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc--E-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|||+| .|..|+.+.+.|.+.      .+  + +.+.....+.-.++..-.|....-..........+++|+++.+.+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag   75 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAG   75 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCc
Confidence            7899998 799999999999885      33  2 222222211111111111221000000012245668999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      -....++.++..+   .|.+|+|.++.
T Consensus        76 ~~~s~~~~p~~~~---~G~~VIdnsSa   99 (334)
T COG0136          76 GSVSKEVEPKAAE---AGCVVIDNSSA   99 (334)
T ss_pred             hHHHHHHHHHHHH---cCCEEEeCCcc
Confidence            8877777776654   58999988765

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.00  E-value=0.12  Score=51.49  Aligned_cols=72  Identities=24%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ++++ +++.|||.|.+|.++|+.|.+.      |++|.+.++......    +...+.|.....  ....++...++|+|
T Consensus         2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~v   72 (450)
T PRK14106          2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLV   72 (450)
T ss_pred             CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEE
Confidence            4678 9999999999999999999999      999877766532222    122233543210  11233556789999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      |.++-
T Consensus        73 v~~~g   77 (450)
T PRK14106         73 VVSPG   77 (450)
T ss_pred             EECCC
Confidence            99764

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.00  E-value=0.093  Score=51.55  Aligned_cols=87  Identities=15%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc---EEE-EEec-CCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VGLR-KGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~---~Vi-vg~r-~~~~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++|+||| .|..|..+.+.|.+.      ++   ++. +..+ ...+....   .|  ...+   ..+. +.++++|+||
T Consensus         8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~~v~---~~~~-~~~~~~D~vf   74 (344)
T PLN02383          8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDYTVE---ELTE-DSFDGVDIAL   74 (344)
T ss_pred             CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCceeEEE---eCCH-HHHcCCCEEE
Confidence            7899999 789999999999875      54   222 2222 21111111   12  1110   0122 4568999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +++|.....++..+...   .|+.|+|.++.
T Consensus        75 ~a~p~~~s~~~~~~~~~---~g~~VIDlS~~  102 (344)
T PLN02383         75 FSAGGSISKKFGPIAVD---KGAVVVDNSSA  102 (344)
T ss_pred             ECCCcHHHHHHHHHHHh---CCCEEEECCch
Confidence            99999877777776533   68899998864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.96  E-value=0.096  Score=52.74  Aligned_cols=71  Identities=27%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhhccCCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      .++.| +++.|||.|.+|.+.|..|++.      |++|.+.++.+...    .+..++.|+...   .....+...++|+
T Consensus        12 ~~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~   81 (480)
T PRK01438         12 SDWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDL   81 (480)
T ss_pred             cCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCE
Confidence            35678 9999999999999999999999      99987766443211    233445676531   1111124557999


Q ss_pred             EEEcc
Q 021356          182 VLLLI  186 (313)
Q Consensus       182 IiLav  186 (313)
                      ||++.
T Consensus        82 Vv~s~   86 (480)
T PRK01438         82 VVTSP   86 (480)
T ss_pred             EEECC
Confidence            99976

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.93  E-value=0.29  Score=46.87  Aligned_cols=95  Identities=21%  Similarity=0.148  Sum_probs=62.7

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hhccCCEEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL  183 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~~e--~i~~ADvIi  183 (313)
                      .+| .++.|+|.|.+|...++.++..      |.+|++..++  +++..+.+++.|...-+....+..+  .....|+||
T Consensus       171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi  243 (355)
T cd08230         171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII  243 (355)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence            368 9999999999999999999998      9887666553  3455667788886421100011111  224579999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      -++....   .+++....++++-.++.++
T Consensus       244 d~~g~~~---~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         244 EATGVPP---LAFEALPALAPNGVVILFG  269 (355)
T ss_pred             ECcCCHH---HHHHHHHHccCCcEEEEEe
Confidence            9887432   4556666777777665443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd00704 MDH Malate dehydrogenase

Probab=94.92  E-value=0.096  Score=50.94  Aligned_cols=68  Identities=12%  Similarity=0.076  Sum_probs=39.3

Q ss_pred             EEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcccHHHHHHCCceec------C-CCcCCHHhhhc
Q 021356          113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE------N-GTLGDIYETIS  177 (313)
Q Consensus       113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~------~-~~~~~~~e~i~  177 (313)
                      ||+|||. |.+|.+++..|...      ++       ++.+.+.........+......+.      + .......+.++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~   75 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK   75 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC
Confidence            7999999 99999999998865      43       344444432000011111111100      0 00135678899


Q ss_pred             cCCEEEEcc
Q 021356          178 GSDLVLLLI  186 (313)
Q Consensus       178 ~ADvIiLav  186 (313)
                      +||+||++-
T Consensus        76 ~aDiVVitA   84 (323)
T cd00704          76 DVDVAILVG   84 (323)
T ss_pred             CCCEEEEeC
Confidence            999999865

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.92  E-value=0.049  Score=49.70  Aligned_cols=79  Identities=9%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             CEEEEEcccchHHHHHHH--HHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~--Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      -++.|||.|++|.|++..  .++.      +++++-..|.+++..-. .-.++...  ...++++.++  +.|+.||++|
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~-~~~~v~V~--~~d~le~~v~~~dv~iaiLtVP  155 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGT-KIGDVPVY--DLDDLEKFVKKNDVEIAILTVP  155 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCc-ccCCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence            578999999999999864  3345      88888777776542211 11233321  2456777777  7899999999


Q ss_pred             chhHHHHHHHHH
Q 021356          188 DAAQADNYEKIF  199 (313)
Q Consensus       188 ~~a~~~vi~ei~  199 (313)
                      -....++.+.+.
T Consensus       156 a~~AQ~vad~Lv  167 (211)
T COG2344         156 AEHAQEVADRLV  167 (211)
T ss_pred             HHHHHHHHHHHH
Confidence            766555666543

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.91  E-value=0.098  Score=51.26  Aligned_cols=88  Identities=22%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcE--EEEEecCCc---ccHHHH-HHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGS---RSFAEA-RAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~--Vivg~r~~~---~s~~~A-~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ++|+||| .|..|..+.+.|.+.      ++.  .+......+   +..... ...-+.     ..+.++ ++++|++++
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~-----~~~~~~-~~~vD~vFl   72 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAGKNLRVR-----EVDSFD-FSQVQLAFF   72 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCCcceEEe-----eCChHH-hcCCCEEEE
Confidence            6899999 599999999999865      431  112222211   111100 001111     112233 589999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++|.....++.++..+   .|..++|.+|.
T Consensus        73 a~p~~~s~~~v~~~~~---~G~~VIDlS~~   99 (336)
T PRK05671         73 AAGAAVSRSFAEKARA---AGCSVIDLSGA   99 (336)
T ss_pred             cCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence            9997655566665544   48889988764

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.91  E-value=0.084  Score=51.06  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=55.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhc-hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .+|+| |++.|||-+ .+|..+|..|.+. +.   .+..|.+.-.+                   +.++++.+++||+||
T Consensus       153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~---~~aTVtvchs~-------------------T~~l~~~~~~ADIvI  209 (297)
T PRK14167        153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKADG---GNATVTVCHSR-------------------TDDLAAKTRRADIVV  209 (297)
T ss_pred             CCCCC-CEEEEECCCcccHHHHHHHHhcCccC---CCCEEEEeCCC-------------------CCCHHHHHhhCCEEE
Confidence            37999 999999965 7899999998653 00   02345443111                   236778899999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .++--..   ++.  .+++|+|++|+|++
T Consensus       210 sAvGkp~---~i~--~~~ik~gaiVIDvG  233 (297)
T PRK14167        210 AAAGVPE---LID--GSMLSEGATVIDVG  233 (297)
T ss_pred             EccCCcC---ccC--HHHcCCCCEEEEcc
Confidence            9886433   333  25679999999986

>PRK05086 malate dehydrogenase; Provisional

Probab=94.90  E-value=0.14  Score=49.37  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=40.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH--C-C--ceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--A-G--FTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~-G--~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |||+|||. |.+|.+++..|...+.   .+.++.+..+. +.....+.+  . +  .........++.+.++++|+||++
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~---~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit   76 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLP---AGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS   76 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCC---CccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence            68999999 9999999988854210   03344444443 322111111  1 1  110000013556788999999998


Q ss_pred             cc
Q 021356          186 IS  187 (313)
Q Consensus       186 vP  187 (313)
                      .-
T Consensus        77 aG   78 (312)
T PRK05086         77 AG   78 (312)
T ss_pred             CC
Confidence            74

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.87  E-value=0.14  Score=49.26  Aligned_cols=69  Identities=26%  Similarity=0.349  Sum_probs=41.6

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCC--cccHHHHH-------HCCceecCCCcCCHHhhhccC
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~~~~~~~e~i~~A  179 (313)
                      |||+|||. |.+|..++..|...      |+  ++++.++..  +.....+.       ..+...+-....+ .+.+++|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~a   73 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGS   73 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCC
Confidence            68999997 99999999999887      76  355555532  11111110       1111000000124 4569999


Q ss_pred             CEEEEccc
Q 021356          180 DLVLLLIS  187 (313)
Q Consensus       180 DvIiLavP  187 (313)
                      |+||++..
T Consensus        74 DiViitag   81 (309)
T cd05294          74 DIVIITAG   81 (309)
T ss_pred             CEEEEecC
Confidence            99999885

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.80  E-value=0.08  Score=53.08  Aligned_cols=67  Identities=30%  Similarity=0.291  Sum_probs=46.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| ++|.|||+|-.|.+.|+.|++.      |++|.+.++. ........+.|+...   ..+ .+-+.++|+||.
T Consensus         5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~---~~~-~~~~~~~d~vv~   71 (460)
T PRK01390          5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDN-PASRAKAAAAGITTA---DLR-TADWSGFAALVL   71 (460)
T ss_pred             cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCC-hhhHHHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence            45788 9999999999999999999999      9987655533 222223345566521   112 234578999886

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.77  E-value=0.13  Score=49.36  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=59.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      | ++|+|||--.=-..+++.|.+.      |++|.+..-+++.   + ...|...    ..+.+++++++|+|++.+|+.
T Consensus         2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~   66 (296)
T PRK08306          2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGT   66 (296)
T ss_pred             C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccc
Confidence            5 8999999888778889999999      9988764333221   1 2246553    346688999999999999973


Q ss_pred             hH--------H--H-HH-HHHHhcCCCCcEEE
Q 021356          190 AQ--------A--D-NY-EKIFSCMKPNSILG  209 (313)
Q Consensus       190 a~--------~--~-vi-~ei~~~mk~gaiLi  209 (313)
                      ..        .  + -+ ++.++.|++++++.
T Consensus        67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~   98 (296)
T PRK08306         67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF   98 (296)
T ss_pred             cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence            21        0  1 12 36788899998655

>PLN02602 lactate dehydrogenase

Probab=94.76  E-value=0.1  Score=51.47  Aligned_cols=68  Identities=22%  Similarity=0.260  Sum_probs=40.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--C--ceec-CCCc-CCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEE-NGTL-GDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~-~~~~-~~~~e~i~~ADvIi  183 (313)
                      +||+|||.|.+|.++|..|...      +.  ++.+.+.........+.+.  .  +... .-.. .+. +.+++||+||
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVV  110 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCI  110 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEE
Confidence            5999999999999999998877      65  4444443322222222211  0  1100 0001 233 4589999999


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      ++.
T Consensus       111 itA  113 (350)
T PLN02602        111 VTA  113 (350)
T ss_pred             ECC
Confidence            984

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.76  E-value=0.3  Score=47.65  Aligned_cols=94  Identities=15%  Similarity=0.203  Sum_probs=62.6

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcC-CHH----hhh--ccC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~-~~~----e~i--~~A  179 (313)
                      ..| .++.|+|.|.||.-.++.++..      |...++..+.++..++.|++ .|...-..... +..    +.-  ..+
T Consensus       167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~  239 (350)
T COG1063         167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA  239 (350)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence            444 5899999999999999999988      87656666777777888888 44321000001 111    222  359


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      |++|-++-   ....+++....++++-.+..+
T Consensus       240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         240 DVVIEAVG---SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             CEEEECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence            99999999   333566667777777665543

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.74  E-value=0.19  Score=49.57  Aligned_cols=92  Identities=15%  Similarity=0.122  Sum_probs=65.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhhccC--CEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~A--DvIiLavP~  188 (313)
                      -++||+|+|.|+.-.++.|.-. .+  +++.|+. +.++-+...+.|++.++. .-...++.+|++++.  |+|.+.+|.
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~   82 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN   82 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence            4789999999999999998764 11  2555443 334344556788888883 123467999999876  999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEE
Q 021356          189 AAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      ..+.++.-..+.+=|+  +|+
T Consensus        83 ~qH~evv~l~l~~~K~--VL~  101 (351)
T KOG2741|consen   83 PQHYEVVMLALNKGKH--VLC  101 (351)
T ss_pred             ccHHHHHHHHHHcCCc--EEe
Confidence            9998877655544333  555

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.70  E-value=0.18  Score=47.69  Aligned_cols=89  Identities=9%  Similarity=-0.003  Sum_probs=59.2

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      .+| +++.|+|.|.+|...++.++..      |.++++..+.+++..+.+.+.++++      ..++.-...|+|+=++.
T Consensus       143 ~~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G  209 (308)
T TIGR01202       143 VKV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASG  209 (308)
T ss_pred             cCC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCC
Confidence            367 8999999999999999999988      9876666555544455555444432      11112246899998887


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEec
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ...   .+++..+.++++-.++.++
T Consensus       210 ~~~---~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       210 DPS---LIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CHH---HHHHHHHhhhcCcEEEEEe
Confidence            543   3455566677777666443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.68  E-value=0.11  Score=50.69  Aligned_cols=98  Identities=16%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhc---hhh-hcCCcEEEEEecCCc-------ccHH----HHHHCCceec---CCCcCCHH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS---LAE-AKSDIVVKVGLRKGS-------RSFA----EARAAGFTEE---NGTLGDIY  173 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~---~~~-~~~G~~Vivg~r~~~-------~s~~----~A~~~G~~~~---~~~~~~~~  173 (313)
                      .+|+|||+|.||..+++.|++.   +.+ .+.+++++...+++.       -..+    .+.+.|....   .....+.+
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            5899999999999999998754   111 112445433333210       0111    2222232110   00123777


Q ss_pred             hhh--ccCCEEEEcccchhHH-HH-HHHHHhcCCCCcEEE
Q 021356          174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILG  209 (313)
Q Consensus       174 e~i--~~ADvIiLavP~~a~~-~v-i~ei~~~mk~gaiLi  209 (313)
                      +++  .+.|+|+.++|+..+. +. .+-+...|+.|.-|+
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVV  122 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVV  122 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEE
Confidence            877  4689999999986542 21 222233445565554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.62  E-value=0.24  Score=50.70  Aligned_cols=102  Identities=16%  Similarity=0.226  Sum_probs=67.8

Q ss_pred             cccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-----cee------
Q 021356          106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------  164 (313)
Q Consensus       106 ~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~------  164 (313)
                      ..+.| ++|+|+|+          .+-...+++.|.+.      |.+|.+.+.. -...+.....+     +..      
T Consensus       320 ~~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~-v~~~~~~~~~~~~~~~~~~~~~~~~  391 (473)
T PLN02353        320 NTVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQ-VTEEQIQRDLSMNKFDWDHPRHLQP  391 (473)
T ss_pred             cccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCC-CChHHHHHHhhcccccccccccccc
Confidence            35889 99999998          45667788888887      9987665543 11111111111     100      


Q ss_pred             -------cCCCcCCHHhhhccCCEEEEcccchhHHHH-HHHHHhcCCCCcEEEEecCch
Q 021356          165 -------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       165 -------~~~~~~~~~e~i~~ADvIiLavP~~a~~~v-i~ei~~~mk~gaiLid~~Gv~  215 (313)
                             +...+.+.++++++||+|++++.-....++ ++++.+.|++..+|+|..++.
T Consensus       392 ~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l  450 (473)
T PLN02353        392 MSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL  450 (473)
T ss_pred             cccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence                   001133567899999999999998887763 567777787666889988774

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.60  E-value=0.23  Score=45.60  Aligned_cols=83  Identities=17%  Similarity=0.037  Sum_probs=56.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .-+|+| +++.|||-|..|..=++.|.+.      |-+|++....- ++......+.++...+ ...+.++. ..+++|+
T Consensus         7 ~~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~-~~~~lvi   77 (210)
T COG1648           7 FLDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDL-DDAFLVI   77 (210)
T ss_pred             EEEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhh-cCceEEE
Confidence            368999 9999999999999999999888      88877666543 2333344444421111 12344444 4599999


Q ss_pred             EcccchhHHHHHH
Q 021356          184 LLISDAAQADNYE  196 (313)
Q Consensus       184 LavP~~a~~~vi~  196 (313)
                      .+|.+....+-+.
T Consensus        78 aAt~d~~ln~~i~   90 (210)
T COG1648          78 AATDDEELNERIA   90 (210)
T ss_pred             EeCCCHHHHHHHH
Confidence            9999988766443

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.55  E-value=0.13  Score=47.07  Aligned_cols=68  Identities=22%  Similarity=0.264  Sum_probs=46.9

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~---~~~~~e~i~~ADvIiLavP  187 (313)
                      |||+||| .|..|..+++-+.+.      |++|....|+.++...   ..+.......   .....+.+..-|+||.+.-
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc---cccceeecccccChhhhHhhhcCCceEEEecc
Confidence            7999999 799999999999999      9998777776443221   1232110111   2233468889999999874


Q ss_pred             c
Q 021356          188 D  188 (313)
Q Consensus       188 ~  188 (313)
                      .
T Consensus        72 ~   72 (211)
T COG2910          72 A   72 (211)
T ss_pred             C
Confidence            3

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.52  E-value=0.31  Score=47.80  Aligned_cols=71  Identities=17%  Similarity=0.160  Sum_probs=49.8

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      .++| .+|++||-+  ++..|++..+...      |+++.+...+.    ....+    .+++.|...  ....++++++
T Consensus       153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~  223 (334)
T PRK12562        153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKI--TLTEDIAAGV  223 (334)
T ss_pred             CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence            4778 999999976  7899999999888      99877665432    11122    233445321  0146899999


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      +++|+|..-.
T Consensus       224 ~~aDvvyt~~  233 (334)
T PRK12562        224 KGADFIYTDV  233 (334)
T ss_pred             CCCCEEEEcC
Confidence            9999999865

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.43  E-value=0.42  Score=45.64  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc---cCCEEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL  183 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~---~ADvIi  183 (313)
                      .+| .++.|+|.|.+|...++.++..      |.+.++..+.+++..+.+++.|...- +....+..+...   ..|+|+
T Consensus       168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi  240 (343)
T PRK09880        168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF  240 (343)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence            468 9999999999999999999998      98433444444556778888886320 000112333332   279999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      =++...   ..++.....++++-.++.++
T Consensus       241 d~~G~~---~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 EVSGHP---SSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             ECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence            888743   23455556677777766554

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.42  E-value=0.26  Score=47.81  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             EEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCc--ccHHHHHHCCce---ecCCCcC-CHHhhhccCCEEE
Q 021356          113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGFT---EENGTLG-DIYETISGSDLVL  183 (313)
Q Consensus       113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~~---~~~~~~~-~~~e~i~~ADvIi  183 (313)
                      ||+|||. |.+|.++|..|...      ++  ++++.+....  ..++.  ..+..   ....+.. +..+.+++||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL--~~~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADL--SHIPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchh--hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence            6899999 99999999998776      65  4444443321  11111  11111   0000001 2367899999999


Q ss_pred             Eccc
Q 021356          184 LLIS  187 (313)
Q Consensus       184 LavP  187 (313)
                      ++.-
T Consensus        73 itaG   76 (312)
T TIGR01772        73 IPAG   76 (312)
T ss_pred             EeCC
Confidence            9764

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.42  E-value=0.21  Score=49.18  Aligned_cols=85  Identities=14%  Similarity=0.109  Sum_probs=57.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc---
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS---  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP---  187 (313)
                      .+|||||+ .+|...+.++++.    ..+.+++...+++ ++..+.|.+.|+..    ..+.+|++++.|++++++|   
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~   74 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI   74 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence            68999999 5799999988876    0035654444444 34456777788752    5799999988888888875   


Q ss_pred             -chhHHHHHHHHHhcCCCCcEE
Q 021356          188 -DAAQADNYEKIFSCMKPNSIL  208 (313)
Q Consensus       188 -~~a~~~vi~ei~~~mk~gaiL  208 (313)
                       +..+.++..+.+   +.|+-|
T Consensus        75 P~~~H~e~a~~aL---~aGkHV   93 (343)
T TIGR01761        75 VGGQGSALARALL---ARGIHV   93 (343)
T ss_pred             CCccHHHHHHHHH---hCCCeE
Confidence             345666655443   345543

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.39  E-value=0.24  Score=44.73  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      .+.|+. ++|.|||+|.+|..++++|...
T Consensus        16 Q~~L~~-s~VlIiG~gglG~evak~La~~   43 (197)
T cd01492          16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS   43 (197)
T ss_pred             HHHHHh-CcEEEEcCCHHHHHHHHHHHHc
Confidence            467788 9999999999999999999998

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=94.36  E-value=0.16  Score=49.57  Aligned_cols=95  Identities=9%  Similarity=0.024  Sum_probs=55.3

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCc-----ee---cCCCc-CCHHhhhccCC
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGF-----TE---ENGTL-GDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~-----~~---~~~~~-~~~~e~i~~AD  180 (313)
                      ++|+|+|+ |.+|..+++.|...     ..+++....+..+. .........+     ..   .+-.+ ...++...++|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~-----~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   75 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKH-----PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVD   75 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-----CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCC
Confidence            47999995 99999999988765     13565444333211 0111111111     00   00001 01223558999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|++++|.....++.+++..   .|..++|.+|.
T Consensus        76 vVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~  106 (341)
T TIGR00978        76 IVFSALPSEVAEEVEPKLAE---AGKPVFSNASN  106 (341)
T ss_pred             EEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence            99999999887777765543   57778887764

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.35  E-value=0.096  Score=54.23  Aligned_cols=94  Identities=22%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLa  185 (313)
                      +++| +++.|+|.|-+|.+++..|.+.      |.+|++.+|..++..+.+.+.+...  ....+..+. ...+|+|+-+
T Consensus       376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINt  446 (529)
T PLN02520        376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANT  446 (529)
T ss_pred             CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEec
Confidence            4778 9999999999999999999998      9888777775444444444433110  001122222 2357888888


Q ss_pred             ccchhHHH----HHHHHHhcCCCCcEEEEe
Q 021356          186 ISDAAQAD----NYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       186 vP~~a~~~----vi~ei~~~mk~gaiLid~  211 (313)
                      +|......    -++  ...++++.++.|+
T Consensus       447 T~vGm~~~~~~~pl~--~~~l~~~~~v~D~  474 (529)
T PLN02520        447 TSVGMQPNVDETPIS--KHALKHYSLVFDA  474 (529)
T ss_pred             ccCCCCCCCCCCccc--HhhCCCCCEEEEe
Confidence            88765321    111  1235556666665

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=94.32  E-value=0.58  Score=47.71  Aligned_cols=75  Identities=17%  Similarity=0.080  Sum_probs=41.0

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhc-hhhhcCCc--EEEEEecCCcccHHHHHH--CCc---eecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI--VVKVGLRKGSRSFAEARA--AGF---TEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~-~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~---~~~~~~~~~~~e~i~~ADvI  182 (313)
                      -||+|||. |.+|.++|..|... +.+...++  ++++.+...+.....+.+  .+.   ..+-....+..+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            78999999 99999999987643 10000022  444444333332222221  111   00000012456789999999


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      |+..
T Consensus       181 VitA  184 (444)
T PLN00112        181 LLIG  184 (444)
T ss_pred             EECC
Confidence            9976

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.28  E-value=0.34  Score=45.03  Aligned_cols=48  Identities=21%  Similarity=0.170  Sum_probs=37.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      +| .++.|+|.|.+|...++.++..      |.+.++..+.+++..+.+++.|..
T Consensus       120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~  167 (280)
T TIGR03366       120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPSPDRRELALSFGAT  167 (280)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCc
Confidence            78 9999999999999999999998      986334445555556777777763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.26  E-value=0.26  Score=44.46  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVG  146 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg  146 (313)
                      .+-|.. .+|.|||+|-+|..++++|...      |+. +.+.
T Consensus        14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lv   49 (198)
T cd01485          14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIV   49 (198)
T ss_pred             HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEE
Confidence            366778 9999999999999999999998      874 4344

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.21  E-value=0.17  Score=51.48  Aligned_cols=74  Identities=24%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHC--CceecCCCcCCHHhhhccCCEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++.+ ++|.|||.|..|.++|+.|++.      |++|.+.+.... +..+...+.  |+....+  ....+.+.++|+||
T Consensus         4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g--~~~~~~~~~~d~vv   74 (498)
T PRK02006          4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFVGG--PFDPALLDGVDLVA   74 (498)
T ss_pred             ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEEeC--CCchhHhcCCCEEE
Confidence            3667 9999999999999999999999      998765553321 122222233  3322111  12345677899999


Q ss_pred             Ec--ccch
Q 021356          184 LL--ISDA  189 (313)
Q Consensus       184 La--vP~~  189 (313)
                      ..  +|+.
T Consensus        75 ~sp~I~~~   82 (498)
T PRK02006         75 LSPGLSPL   82 (498)
T ss_pred             ECCCCCCc
Confidence            95  5653

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.19  E-value=0.14  Score=50.29  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhc-hhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLav  186 (313)
                      ++|+||| .|..|+.+.+.|... +    +..++......++  +.....- ....     ..+.++. ..++|++++++
T Consensus         5 ~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~   74 (336)
T PRK08040          5 WNIALLGATGAVGEALLELLAERQF----PVGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA   74 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence            7999999 599999999999874 1    1224332222211  1111000 0111     2233333 37899999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |.....++..+..+   .|+.|+|.++.
T Consensus        75 p~~~s~~~~~~~~~---~g~~VIDlS~~   99 (336)
T PRK08040         75 GREASAAYAEEATN---AGCLVIDSSGL   99 (336)
T ss_pred             CHHHHHHHHHHHHH---CCCEEEECChH
Confidence            98877777776644   58899998864

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.99  E-value=0.16  Score=51.13  Aligned_cols=91  Identities=15%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchh----hhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~----~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLa  185 (313)
                      .+|||||+|.+|..+++.|.+..+    ..|.++++....+++..   .+....... .....+.++++.  +.|+|+.+
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~---~~~~~~~~~-~~~~~d~~~ll~d~~iDvVve~   79 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE---KDRGVDLPG-ILLTTDPEELVNDPDIDIVVEL   79 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh---hccCCCCcc-cceeCCHHHHhhCCCCCEEEEC
Confidence            579999999999999998865411    11223454333333221   111111100 012347888885  57999999


Q ss_pred             ccchh-HHHHHHHHHhcCCCCcEEE
Q 021356          186 ISDAA-QADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       186 vP~~a-~~~vi~ei~~~mk~gaiLi  209 (313)
                      ++... ..+.+.   ..|+.|+-|+
T Consensus        80 tg~~~~~~~~~~---~aL~~GkhVV  101 (426)
T PRK06349         80 MGGIEPARELIL---KALEAGKHVV  101 (426)
T ss_pred             CCCchHHHHHHH---HHHHCCCeEE
Confidence            87643 233333   3344565544

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.97  E-value=0.16  Score=42.50  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEe
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL  147 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~  147 (313)
                      ++|.|||+|.+|..++++|...      |+ ++.+.+
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD   33 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVD   33 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHh------CCCceeecC
Confidence            7899999999999999999998      87 455554

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.91  E-value=0.38  Score=47.87  Aligned_cols=90  Identities=19%  Similarity=0.250  Sum_probs=62.6

Q ss_pred             cccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021356          106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~  175 (313)
                      ..+.| ++|+|.|+          -+-.-.+++.|.+.      |.+|.+.+..-.. .. ....+.      ..+.+++
T Consensus       309 ~~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~-~~~~~~------~~~~~~~  373 (411)
T TIGR03026       309 GPLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EE-VKGLPL------IDDLEEA  373 (411)
T ss_pred             hcccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hh-hhhccc------CCCHHHH
Confidence            35799 99999998          44666778888888      9987666543221 11 111111      3478899


Q ss_pred             hccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEe
Q 021356          176 ISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~  211 (313)
                      +++||+|++++.-....+ -++++...|++ .+|+|.
T Consensus       374 ~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~  409 (411)
T TIGR03026       374 LKGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT  409 (411)
T ss_pred             HhCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence            999999999999888766 35667776764 477774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.89  E-value=0.22  Score=49.44  Aligned_cols=71  Identities=21%  Similarity=0.181  Sum_probs=46.7

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhhcc-CCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~~~e~i~~-ADvI  182 (313)
                      ++.| +++.|+|.|.+|.+.|+.|.+.      |.+|++.++....   ..+...+.|+....+  ....+++.+ .|+|
T Consensus         2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~v   72 (447)
T PRK02472          2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLM   72 (447)
T ss_pred             CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEE
Confidence            3678 9999999999999999999999      9988766543221   123334456542100  123344454 8988


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      |...
T Consensus        73 V~s~   76 (447)
T PRK02472         73 VKNP   76 (447)
T ss_pred             EECC
Confidence            8854

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.88  E-value=0.24  Score=45.38  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ..-|.. ++|.|||+|-+|..+|++|...
T Consensus        16 q~~L~~-~~VlivG~GglGs~va~~La~~   43 (228)
T cd00757          16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA   43 (228)
T ss_pred             HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence            356778 9999999999999999999998

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.86  E-value=2.4  Score=42.88  Aligned_cols=167  Identities=20%  Similarity=0.192  Sum_probs=100.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccH--HHHHHC--Cceec----------------CCCc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL  169 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~--~~A~~~--G~~~~----------------~~~~  169 (313)
                      |.++-|+|.|..+--+|..+++.      +- ++-+..|.+.++.  -.+.+.  +....                +...
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~   74 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF   74 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence            46889999999999999999976      33 4545556543333  222222  21110                0113


Q ss_pred             CCHHhhhccCCEEEEcccchhHHHHHHHH----HhcCCCCcEEEEecCch----h-hhhhhcccCCCCCccEEE------
Q 021356          170 GDIYETISGSDLVLLLISDAAQADNYEKI----FSCMKPNSILGLSHGFL----L-GHLQSIGLDFPKNIGVIA------  234 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a~~~vi~ei----~~~mk~gaiLid~~Gv~----l-~~~~~~~~~l~~~i~vV~------  234 (313)
                      .+.+++..+=|.+|||||-++..++++++    +..+|  .+|.++..+.    + ..+.    ....++.||.      
T Consensus        75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk--~iVLvSPtfGS~~lv~~~l~----~~~~~~EVISFStY~g  148 (429)
T PF10100_consen   75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVK--SIVLVSPTFGSHLLVKGFLN----DLGPDAEVISFSTYYG  148 (429)
T ss_pred             cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCC--EEEEECcccchHHHHHHHHH----hcCCCceEEEeecccc
Confidence            46677888889999999999999998765    34443  3555555442    2 2222    2233677775      


Q ss_pred             ----eccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce-eecChhHHHh
Q 021356          235 ----VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-FATTLEQEYK  299 (313)
Q Consensus       235 ----vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~-~~tT~~~e~~  299 (313)
                          .+...|-.+.-...+         ...++... +.+...++....++..+|-.-. +.+-++.|.+
T Consensus       149 dTr~~d~~~~~~vlt~~vK---------~kiYigSt-~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r  208 (429)
T PF10100_consen  149 DTRWSDGEQPNRVLTTAVK---------KKIYIGST-HSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR  208 (429)
T ss_pred             cceeccCCCcceehhhhhh---------ceEEEEeC-CCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence                444444444433443         22334443 4556788888999999997654 5555555654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.86  E-value=0.48  Score=45.45  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHh-chhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiL  184 (313)
                      +| .++.|+|.|.+|...++.+++ .      | .+|++..+ ++...+.+++.|...      ..++..+  ..|+|+=
T Consensus       163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~-~~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD  228 (341)
T cd08237         163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGK-HQEKLDLFSFADETY------LIDDIPEDLAVDHAFE  228 (341)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeC-cHhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence            47 899999999999998888775 4      4 35554443 344455666555432      1112222  4799998


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      ++........+++..+.++++-.++.+
T Consensus       229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         229 CVGGRGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence            887432334666677778887766543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.85  E-value=0.17  Score=49.04  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=40.4

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHH--HCC---ceecCC-CcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG---FTEENG-TLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G---~~~~~~-~~~~~~e~i~~ADvI  182 (313)
                      +||+|||. |.+|.++|..|...      ++  ++++.+..  .....+.  ..+   ...... ...++.+.+++||+|
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDiv   72 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVV   72 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence            58999999 99999999999876      65  44444332  2111111  111   111000 011335789999999


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      +++.
T Consensus        73 vita   76 (310)
T cd01337          73 VIPA   76 (310)
T ss_pred             EEeC
Confidence            9975

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.83  E-value=0.25  Score=52.03  Aligned_cols=72  Identities=21%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT  168 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~  168 (313)
                      .| ++|+|||.|..|.+.|..|++.      |++|.+..+...                    ...+...+.|+...-++
T Consensus       309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~  381 (639)
T PRK12809        309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC  381 (639)
T ss_pred             CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence            58 9999999999999999999998      998877765532                    12344456665321111


Q ss_pred             ----cCCHHhhhccCCEEEEccc
Q 021356          169 ----LGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       169 ----~~~~~e~i~~ADvIiLavP  187 (313)
                          ..+++++..+.|.|++++-
T Consensus       382 ~v~~~~~~~~l~~~~DaV~latG  404 (639)
T PRK12809        382 EIGRDITFSDLTSEYDAVFIGVG  404 (639)
T ss_pred             ccCCcCCHHHHHhcCCEEEEeCC
Confidence                1245566678999999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.82  E-value=0.4  Score=43.77  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=25.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ...|+. .+|.|||+|-+|..+++.|...
T Consensus        23 q~~L~~-~~V~ViG~GglGs~ia~~La~~   50 (212)
T PRK08644         23 LEKLKK-AKVGIAGAGGLGSNIAVALARS   50 (212)
T ss_pred             HHHHhC-CCEEEECcCHHHHHHHHHHHHc
Confidence            467888 9999999999999999999988

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=93.80  E-value=0.57  Score=45.26  Aligned_cols=71  Identities=18%  Similarity=0.209  Sum_probs=50.9

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc----cHHH-HHHCCceecCCCcCCHHhhhccC
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE-ARAAGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~-A~~~G~~~~~~~~~~~~e~i~~A  179 (313)
                      ..++| .+|++||- ++...|++..+...      |+++.+.....-.    ..+. +++.|...+  ...+++++++++
T Consensus       148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a  218 (304)
T PRK00779        148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGA  218 (304)
T ss_pred             CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCC
Confidence            45888 89999996 78999999999988      9987766543211    1111 455663211  145889999999


Q ss_pred             CEEEEc
Q 021356          180 DLVLLL  185 (313)
Q Consensus       180 DvIiLa  185 (313)
                      |+|..-
T Consensus       219 Dvvy~~  224 (304)
T PRK00779        219 DVVYTD  224 (304)
T ss_pred             CEEEec
Confidence            999985

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.79  E-value=0.3  Score=45.51  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=25.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ...|.. ++|.|||+|-+|..++++|...
T Consensus        27 Q~~L~~-~~VliiG~GglGs~va~~La~~   54 (245)
T PRK05690         27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA   54 (245)
T ss_pred             HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence            467788 9999999999999999999998

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.78  E-value=0.53  Score=39.54  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEE
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG  146 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg  146 (313)
                      +|.|||+|-+|..++++|...      |+ ++.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~iv   29 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS------GVGKITLI   29 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC------CCCEEEEE
Confidence            588999999999999999998      87 34444

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.73  E-value=0.38  Score=47.11  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC---------------------cccHHHHHH---
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA---  159 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~~~A~~---  159 (313)
                      ..-|.. .+|.|||+|-+|..+|+.|...      |. ++.+.++..                     .+....+.+   
T Consensus        19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~   91 (339)
T PRK07688         19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE   91 (339)
T ss_pred             HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence            466778 9999999999999999999988      87 555554321                     111111111   


Q ss_pred             --CCce----ecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021356          160 --AGFT----EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       160 --~G~~----~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~  200 (313)
                        ..+.    ..+-+..+..++++++|+||.++-......++++...
T Consensus        92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~  138 (339)
T PRK07688         92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ  138 (339)
T ss_pred             HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence              1111    0001112345788999999999887766667776543

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.69  E-value=0.21  Score=50.59  Aligned_cols=71  Identities=20%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH--HHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~--A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+.| ++|+|+|+|.=|.+.++.|++.      |.+|++.+.+.......  ..+.+.....  .....+.+.++|+||.
T Consensus         5 ~~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~d~vV~   75 (468)
T PRK04690          5 QLEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLVE--TEASAQRLAAFDVVVK   75 (468)
T ss_pred             hcCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEEe--CCCChHHccCCCEEEE
Confidence            3568 9999999999999999999999      99987776443221111  1222322111  1123456788999988


Q ss_pred             cc
Q 021356          185 LI  186 (313)
Q Consensus       185 av  186 (313)
                      .-
T Consensus        76 Sp   77 (468)
T PRK04690         76 SP   77 (468)
T ss_pred             CC
Confidence            43

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=93.64  E-value=0.21  Score=49.75  Aligned_cols=93  Identities=14%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             CCEEEEEcc-cchHHHHHH-HHHhchhhhcCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~-~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |++|||||+ |..|+.+.+ .|...      .+.   +.......+ ......-.|....-....+ ++.++++|+++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~~ss~~s-g~~~~~f~g~~~~v~~~~~-~~~~~~~Divf~a   72 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVFFSTSQA-GGAAPSFGGKEGTLQDAFD-IDALKKLDIIITC   72 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEEecchhh-CCcccccCCCcceEEecCC-hhHhcCCCEEEEC
Confidence            478999995 999999998 66555      553   433222110 0000000111000000112 2445889999999


Q ss_pred             ccchhHHHHHHHHHhcCCCC--cEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPN--SILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~g--aiLid~~Gv  214 (313)
                      +|.....++..+...   .|  ++|+|.+|.
T Consensus        73 ~~~~~s~~~~~~~~~---aG~~~~VID~Ss~  100 (369)
T PRK06598         73 QGGDYTNEVYPKLRA---AGWQGYWIDAAST  100 (369)
T ss_pred             CCHHHHHHHHHHHHh---CCCCeEEEECChH
Confidence            998877777776544   47  678988864

>PRK09414 glutamate dehydrogenase; Provisional

Probab=93.63  E-value=0.2  Score=51.02  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=52.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec----------CCcccH-HHHHHC-C----ceec-CCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR----------KGSRSF-AEARAA-G----FTEE-NGT  168 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r----------~~~~s~-~~A~~~-G----~~~~-~~~  168 (313)
                      .+|+| ++|+|.|+|++|...|+.|.+.      |.+|+...+          -+...+ +...+. |    +... +..
T Consensus       228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~  300 (445)
T PRK09414        228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE  300 (445)
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe
Confidence            57899 9999999999999999999998      988765534          111111 111111 1    1100 000


Q ss_pred             cCCHHhhhc-cCCEEEEcccchhHHH-HHHHHH
Q 021356          169 LGDIYETIS-GSDLVLLLISDAAQAD-NYEKIF  199 (313)
Q Consensus       169 ~~~~~e~i~-~ADvIiLavP~~a~~~-vi~ei~  199 (313)
                      ..+.++++. +|||++-|...+.+.. ....+.
T Consensus       301 ~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~  333 (445)
T PRK09414        301 YLEGGSPWSVPCDIALPCATQNELDEEDAKTLI  333 (445)
T ss_pred             ecCCccccccCCcEEEecCCcCcCCHHHHHHHH
Confidence            113334333 7999999988776643 555554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=93.58  E-value=0.24  Score=48.42  Aligned_cols=94  Identities=14%  Similarity=0.098  Sum_probs=54.9

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCcee--------cCCC--cCCHHhhhccC
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTE--------ENGT--LGDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~--------~~~~--~~~~~e~i~~A  179 (313)
                      ++|+|+| .|.+|..+.+.|.+.     ..+++....+..+..- ......++..        .+-.  ..+. +.+.++
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~   77 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV   77 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence            7899998 899999999999875     1335443323321100 0100011100        0000  1133 345899


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+|++++|.....++.+.+..   .|..++|.+|.
T Consensus        78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~~  109 (349)
T PRK08664         78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNASA  109 (349)
T ss_pred             CEEEEeCChhHHHHHHHHHHH---CCCEEEECCch
Confidence            999999999876666655433   57778887764

>PLN00106 malate dehydrogenase

Probab=93.58  E-value=0.19  Score=48.95  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=41.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCccc--HHHHHHCC-ceecC-CCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAAG-FTEEN-GTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s--~~~A~~~G-~~~~~-~~~~~~~e~i~~ADvIiL  184 (313)
                      .||+|||. |.+|.++|..|...      ++  ++.+.+....+.  ++...... ....+ ....+..+.+++||+||+
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi   92 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII   92 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence            79999999 99999999999866      54  454444332111  11110000 11101 012355789999999999


Q ss_pred             cc
Q 021356          185 LI  186 (313)
Q Consensus       185 av  186 (313)
                      +.
T Consensus        93 tA   94 (323)
T PLN00106         93 PA   94 (323)
T ss_pred             eC
Confidence            65

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=93.58  E-value=0.11  Score=51.58  Aligned_cols=66  Identities=18%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~i~~ADvIiL  184 (313)
                      ++|||||-|.+|.=++...+..      |+++++.+ .++.+-........+..+ +....+.++++.||+|-.
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLd-p~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARL------GIKVIVLD-PDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhc------CCEEEEec-CCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            8999999999999999999999      99976555 323222222222222100 001246688899999975

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=93.56  E-value=0.14  Score=50.25  Aligned_cols=65  Identities=22%  Similarity=0.181  Sum_probs=41.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL  184 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiL  184 (313)
                      +++|||||-|.+|.-+++.+++.      |+++++........... .......  ....+   +.++++.+|+|..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~-~ad~~~~--~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQ-VADEVIV--ADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhH-hCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence            48999999999999999999999      99977665432211111 1122221  01223   4567788998754

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=93.56  E-value=0.16  Score=50.16  Aligned_cols=84  Identities=14%  Similarity=0.036  Sum_probs=50.6

Q ss_pred             CEEEEEcccchHHHH-HHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc----eecCC-C---------c--CCHHh
Q 021356          112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF----TEENG-T---------L--GDIYE  174 (313)
Q Consensus       112 kkIgIIG~G~mG~Al-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~----~~~~~-~---------~--~~~~e  174 (313)
                      |+|.++|.|+||.+. +..|.+.      |++|++.. .++...+.-.+.|.    +.... .         .  .+.++
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd-~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~   73 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVD-VNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA   73 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhC------CCeEEEEE-CCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence            689999999999876 6667667      88865555 33334444444453    11111 0         0  02122


Q ss_pred             ---hhccCCEEEEcccchhHHHHHHHHHhcC
Q 021356          175 ---TISGSDLVLLLISDAAQADNYEKIFSCM  202 (313)
Q Consensus       175 ---~i~~ADvIiLavP~~a~~~vi~ei~~~m  202 (313)
                         .+.++|+|+++++++....++..+.+.|
T Consensus        74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L  104 (381)
T PRK02318         74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL  104 (381)
T ss_pred             HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence               4458899999999877655555444433

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=93.55  E-value=0.17  Score=43.84  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ....+| ++|++||+  +.+ +...|+..      +.++.+.++.. .... ....++.     ....++++++||+|++
T Consensus         6 ~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~-~~~~-~~~~~~~-----~~~~~~~l~~aD~vii   68 (147)
T PF04016_consen    6 LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNP-DNIG-EEPGDVP-----DEDAEEILPWADVVII   68 (147)
T ss_dssp             CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSG-GG---SSCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred             hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCC-CCCC-CCCCcCC-----HHHHHHHHccCCEEEE
Confidence            355677 99999996  222 67777766      77887777653 2211 0112232     3477899999999988


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .-. +-...-+++++++.++++.++..+
T Consensus        69 TGs-TlvN~Ti~~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   69 TGS-TLVNGTIDDILELARNAREVILYG   95 (147)
T ss_dssp             ECH-HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred             Eee-eeecCCHHHHHHhCccCCeEEEEe
Confidence            532 222246777777777777766554

; PDB: 3L5O_B 3NPG_A.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=93.54  E-value=0.55  Score=44.24  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=65.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhhc---cCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD  180 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~i~---~AD  180 (313)
                      |.| ++|-=||+|  |+.++.-|.+.      |.+| .|.|-.++..+.|+    +.|+.. +-...+.+|+..   +-|
T Consensus        58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD  126 (243)
T COG2227          58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD  126 (243)
T ss_pred             CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence            899 999999999  67888888777      8875 68887777776665    344431 112345666665   579


Q ss_pred             EEEE-----cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiL-----avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+.     |+|+...  ++.....++|||-++.++.
T Consensus       127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLST  161 (243)
T ss_pred             EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEec
Confidence            8876     6665443  7788889999998887653

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.54  E-value=0.24  Score=48.93  Aligned_cols=89  Identities=12%  Similarity=0.143  Sum_probs=55.2

Q ss_pred             CEEEEEcc-cchHHHHHHHHHh-chhhhcCCcE---EEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~-~~~~~~~G~~---Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ++|||||+ |..|+.+.+.|.+ .      .++   +.......  .+......+ ....+   ..+.+ .+++.|++++
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~   74 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF   74 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence            68999995 9999999999984 4      444   32222221  111111100 11110   11333 4589999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++|.....++..+..   +.|+.|+|.++.
T Consensus        75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~  101 (347)
T PRK06728         75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE  101 (347)
T ss_pred             CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence            999887777777654   358899998864

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.49  E-value=0.16  Score=48.26  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLavP~~  189 (313)
                      +++.|+|.|-.+.+++..|.+.      |. ++.+.+|..++..+.+...+..     . . ++. ...+|+||-++|..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~-~-~~~~~~~~dlvINaTp~G  189 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----W-R-PDLGGIEADILVNVTPIG  189 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----c-h-hhcccccCCEEEECCccc
Confidence            7899999999999999999988      87 5888888765555555544432     1 1 111 25689999999965


Q ss_pred             hHHH------HHHHHHhcCCCCcEEEEe
Q 021356          190 AQAD------NYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       190 a~~~------vi~ei~~~mk~gaiLid~  211 (313)
                      ....      -++  ...++++.++.|+
T Consensus       190 m~~~~~~~~~pi~--~~~l~~~~~v~D~  215 (272)
T PRK12550        190 MAGGPEADKLAFP--EAEIDAASVVFDV  215 (272)
T ss_pred             cCCCCccccCCCC--HHHcCCCCEEEEe
Confidence            4311      111  1335666777765

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.49  E-value=0.48  Score=47.45  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=54.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCCHHh----hhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE----TISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e----~i~~ADvIiLa  185 (313)
                      ..+-|+|+|.+|..+++.|++.      |.++++.+.. .  .+...+.|  ++.  +...+.+.    -+++||.|+++
T Consensus       241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d-~--~~~~~~~g~~vI~--GD~td~e~L~~AgI~~A~aVI~~  309 (393)
T PRK10537        241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL-G--LEHRLPDDADLIP--GDSSDSAVLKKAGAARARAILAL  309 (393)
T ss_pred             CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc-h--hhhhccCCCcEEE--eCCCCHHHHHhcCcccCCEEEEc
Confidence            5688999999999999999988      8876665533 1  12333333  332  12223321    35689999999


Q ss_pred             ccchhHHHHHHHHHhcCCCC-cEEEE
Q 021356          186 ISDAAQADNYEKIFSCMKPN-SILGL  210 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~g-aiLid  210 (313)
                      +++++..-.+-.....+.|+ .++.-
T Consensus       310 t~dD~~Nl~ivL~ar~l~p~~kIIa~  335 (393)
T PRK10537        310 RDNDADNAFVVLAAKEMSSDVKTVAA  335 (393)
T ss_pred             CCChHHHHHHHHHHHHhCCCCcEEEE
Confidence            98877655443333344443 34443

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=93.48  E-value=0.53  Score=45.27  Aligned_cols=91  Identities=15%  Similarity=0.267  Sum_probs=67.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~  188 (313)
                      .+|.|.| .|.+|..+-++++..      |.+++++..++.-   ...-.|+..    ..+.+|+-+.  .|+.++++|.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~~~---~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa   73 (286)
T TIGR01019         7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPGKG---GTTVLGLPV----FDSVKEAVEETGANASVIFVPA   73 (286)
T ss_pred             CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCCCC---cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence            5788999 799999999999998      8876666655410   111245552    5578887765  6999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      ....+.+++.... .-..+++.++||..
T Consensus        74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e  100 (286)
T TIGR01019        74 PFAADAIFEAIDA-GIELIVCITEGIPV  100 (286)
T ss_pred             HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence            9999988876652 23467788999853

ATP citrate lyases appear to form an outgroup.

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=93.48  E-value=0.59  Score=45.68  Aligned_cols=91  Identities=11%  Similarity=0.181  Sum_probs=68.2

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLav  186 (313)
                      .+|-|-| .|..|.-.++.+++.      |-+|+.|..++.  ....   ..|+..    +.+..|+.+.  .|+.++.+
T Consensus        30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V   96 (317)
T PTZ00187         30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV   96 (317)
T ss_pred             CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence            6788889 599999999999999      999888887653  2111   125543    5688898887  99999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      |+....+.+.+..+. .-..+|+.+.|+..
T Consensus        97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe  125 (317)
T PTZ00187         97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQ  125 (317)
T ss_pred             CHHHHHHHHHHHHHc-CCCEEEEECCCCch
Confidence            999998877765442 12347778889853

>PLN03075 nicotianamine synthase; Provisional

Probab=93.47  E-value=0.3  Score=47.26  Aligned_cols=120  Identities=14%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             ccccchhhhhhcCCCccccc--ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--
Q 021356           85 SLANRDEFIVRGGRDLFKLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--  160 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~~--~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--  160 (313)
                      +|.+|..| .+=++-++.++  ...... ++|..||+|..|-+-.-.++...    .+- .+++.+.+++..+.|++.  
T Consensus        98 ~Fpy~~nY-~~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~----p~~-~~~giD~d~~ai~~Ar~~~~  170 (296)
T PLN03075         98 LFPYYNNY-LKLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHL----PTT-SFHNFDIDPSANDVARRLVS  170 (296)
T ss_pred             cCCchHHH-HHHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcC----CCC-EEEEEeCCHHHHHHHHHHhh
Confidence            47777777 65555544432  122255 99999999998775544444331    122 357888877666655542  


Q ss_pred             ---Cceec-CCCcCCHHhh---hccCCEEEEccc----chhHHHHHHHHHhcCCCCcEEEEe
Q 021356          161 ---GFTEE-NGTLGDIYET---ISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       161 ---G~~~~-~~~~~~~~e~---i~~ADvIiLavP----~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                         |+... .....+..+.   ..+-|+|++.+=    .....++++.+...|+||.+++.-
T Consensus       171 ~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        171 SDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             hccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence               22100 0001222222   468999999851    134456999999999999988744

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=93.37  E-value=0.44  Score=38.71  Aligned_cols=82  Identities=23%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             cccchHHHHHHHHHhchhhhcCCcEEEEEecCC---cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccchhHH
Q 021356          118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA  192 (313)
Q Consensus       118 G~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~~a~~  192 (313)
                      |+|.||+++++.|.+.-..  .++++....+++   .... .....+...    ..++++++.  +.|+||=+++.....
T Consensus         1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~   73 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA   73 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred             CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence            8999999999999876111  244544333333   1111 111122211    458889988  999999999988887


Q ss_pred             HHHHHHHhcCCCCcEEE
Q 021356          193 DNYEKIFSCMKPNSILG  209 (313)
Q Consensus       193 ~vi~ei~~~mk~gaiLi  209 (313)
                      +.+.+.+.   .|.-|+
T Consensus        74 ~~~~~~L~---~G~~VV   87 (117)
T PF03447_consen   74 EYYEKALE---RGKHVV   87 (117)
T ss_dssp             HHHHHHHH---TTCEEE
T ss_pred             HHHHHHHH---CCCeEE
Confidence            77776554   455444

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK15076 alpha-galactosidase; Provisional

Probab=93.36  E-value=0.18  Score=51.01  Aligned_cols=75  Identities=20%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             CCEEEEEcccchHHHHHH--HHHhchhhhcCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhhccCC
Q 021356          111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      ++||+|||.|+||-+.+.  .+...  ..-.+.+|++.+ .+++..+.+        ...+...+-..+++..+++++||
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvD-id~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMD-IDPERLEESEIVARKLAESLGASAKITATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence            479999999999866655  44311  011144655444 433322211        11221100011357789999999


Q ss_pred             EEEEcccc
Q 021356          181 LVLLLISD  188 (313)
Q Consensus       181 vIiLavP~  188 (313)
                      +|+.++-.
T Consensus        78 fVv~ti~v   85 (431)
T PRK15076         78 YVINAIQV   85 (431)
T ss_pred             EEeEeeee
Confidence            99998754

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.34  E-value=0.28  Score=47.19  Aligned_cols=66  Identities=21%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             EEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecC-CCcCCHHhhhccCCEEEEccc
Q 021356          116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN-GTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       116 IIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~-~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |||.|.+|.++|..|...      ++  ++.+.+.........+.+..    +...+ .......+.+++||+||++.-
T Consensus         1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag   73 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG   73 (299)
T ss_pred             CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence            799999999999999877      65  45555443332222332211    00000 001234578999999999764

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.34  E-value=0.33  Score=48.49  Aligned_cols=71  Identities=21%  Similarity=0.159  Sum_probs=46.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++.+ ++|.|+|.|..|.+.|+.|.+.      |.+|.+.+..... ..+..++  .|+....+  ...++...++|+||
T Consensus         2 ~~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv   72 (445)
T PRK04308          2 TFQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILA   72 (445)
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEE
Confidence            3568 9999999999999999999999      9987766544322 1222222  36542111  11234557899999


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      ...
T Consensus        73 ~sp   75 (445)
T PRK04308         73 LSP   75 (445)
T ss_pred             ECC
Confidence            843

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.34  E-value=0.7  Score=44.79  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEcc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI  186 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~i~~ADvIiLav  186 (313)
                      .| .++.|+|.|.+|...++.++..      |.+|++......+..+.+++.|...- +.. .....+.....|+|+=++
T Consensus       183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~  255 (360)
T PLN02586        183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV  255 (360)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence            67 8999999999999999999998      98876655544444445566776310 000 001222333579998887


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      ...   ..+++....++++-.++.+
T Consensus       256 g~~---~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        256 SAV---HALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             CCH---HHHHHHHHHhcCCcEEEEe
Confidence            632   2344555667777665544

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.32  E-value=0.22  Score=50.71  Aligned_cols=71  Identities=25%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-H--HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-F--AEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~--~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ..+.| |+|.|+|+|.=|.+.++.|++.      |..|++.+++.... .  ......++....+.  ...+-..++|+|
T Consensus         3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v   73 (448)
T COG0771           3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV   73 (448)
T ss_pred             ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence            44557 9999999999999999999999      99988777553321 1  12223454321111  122567889999


Q ss_pred             EEc
Q 021356          183 LLL  185 (313)
Q Consensus       183 iLa  185 (313)
                      ++.
T Consensus        74 V~S   76 (448)
T COG0771          74 VKS   76 (448)
T ss_pred             EEC
Confidence            984

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.30  E-value=0.86  Score=42.36  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=55.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      -.++| +++.|||-|.+|..=++.|.+.      |.+|.+....-.+......+.| +.-.... ... +-+.++++|+.
T Consensus        21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~-~~~-~dl~g~~LVia   91 (223)
T PRK05562         21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGN-YDK-EFIKDKHLIVI   91 (223)
T ss_pred             EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CCh-HHhCCCcEEEE
Confidence            47779 9999999999999988889888      8877666543222222222333 2211111 122 34689999999


Q ss_pred             cccchhHHHHHHHHH
Q 021356          185 LISDAAQADNYEKIF  199 (313)
Q Consensus       185 avP~~a~~~vi~ei~  199 (313)
                      ||.+....+-+.+..
T Consensus        92 ATdD~~vN~~I~~~a  106 (223)
T PRK05562         92 ATDDEKLNNKIRKHC  106 (223)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999988776555443

>PRK08328 hypothetical protein; Provisional

Probab=93.27  E-value=0.56  Score=43.31  Aligned_cols=28  Identities=21%  Similarity=0.404  Sum_probs=25.9

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ...|.+ .+|.|||+|-+|..++++|...
T Consensus        22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~   49 (231)
T PRK08328         22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA   49 (231)
T ss_pred             HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence            467888 9999999999999999999988

>PLN02527 aspartate carbamoyltransferase

Probab=93.22  E-value=0.6  Score=45.21  Aligned_cols=72  Identities=17%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             cccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~  178 (313)
                      ..++| .||++||-+   ++..|++..+...     .|+++.+...++    ....+.+++.|...+  ...++++++++
T Consensus       147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~  218 (306)
T PLN02527        147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASK  218 (306)
T ss_pred             CCcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCC
Confidence            45888 999999976   5789999887763     177776665432    122344555554211  14588999999


Q ss_pred             CCEEEEc
Q 021356          179 SDLVLLL  185 (313)
Q Consensus       179 ADvIiLa  185 (313)
                      ||+|...
T Consensus       219 aDvvyt~  225 (306)
T PLN02527        219 CDVLYQT  225 (306)
T ss_pred             CCEEEEC
Confidence            9999984

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.22  E-value=0.18  Score=48.09  Aligned_cols=76  Identities=21%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC----Cc--eecCCCcCCHHhhhccC
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GF--TEENGTLGDIYETISGS  179 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~--~~~~~~~~~~~e~i~~A  179 (313)
                      ++.| +++.|+|.|=.|.+++..|.+.      |. ++.+.+|..++..+.+.+.    +.  +. .....+..+.+.++
T Consensus       124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~  195 (283)
T PRK14027        124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAA  195 (283)
T ss_pred             CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhc
Confidence            5678 9999999999999999999988      87 5677777654444444332    11  11 00001123456789


Q ss_pred             CEEEEcccchh
Q 021356          180 DLVLLLISDAA  190 (313)
Q Consensus       180 DvIiLavP~~a  190 (313)
                      |+||-++|...
T Consensus       196 divINaTp~Gm  206 (283)
T PRK14027        196 DGVVNATPMGM  206 (283)
T ss_pred             CEEEEcCCCCC
Confidence            99999999654

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=93.19  E-value=0.33  Score=47.53  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhh
Q 021356          106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~  175 (313)
                      ..++| .+|++||-+  ++..|++..+...      |+++.+...+.    +...    +.+.+.|...  ....+++++
T Consensus       151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea  221 (332)
T PRK04284        151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEG  221 (332)
T ss_pred             CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence            35788 999999975  8889999999888      99877665432    1122    2233456321  014689999


Q ss_pred             hccCCEEEEcc
Q 021356          176 ISGSDLVLLLI  186 (313)
Q Consensus       176 i~~ADvIiLav  186 (313)
                      +++||+|..-+
T Consensus       222 ~~~aDvvy~~~  232 (332)
T PRK04284        222 VKGSDVIYTDV  232 (332)
T ss_pred             hCCCCEEEECC
Confidence            99999999853

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=93.16  E-value=0.68  Score=44.94  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=72.9

Q ss_pred             ccchhHHHHHHHH--HhcCCCCcEEEEe-cCc---hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021356          186 ISDAAQADNYEKI--FSCMKPNSILGLS-HGF---LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       186 vP~~a~~~vi~ei--~~~mk~gaiLid~-~Gv---~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      +++.....++++.  .-.++||.+|+.. +|-   .+..+..     ..+.+++.+||.++..+.+.+-+.      .|+
T Consensus        41 vKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a------~GA  109 (300)
T COG0031          41 VKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRA------LGA  109 (300)
T ss_pred             hhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHH------cCC
Confidence            5566666677633  3459999999965 443   3444433     247899999999999998887775      589


Q ss_pred             eEEEEec-cCCCHHHHHHHHHHHHHcCCCc------eeecChhHHHh
Q 021356          260 NSSFAVH-QDVDGRATNVALGWSVALGSPF------TFATTLEQEYK  299 (313)
Q Consensus       260 ~~iitp~-~d~~~ea~e~a~~L~~alG~~~------~~~tT~~~e~~  299 (313)
                      ..+++|. +.....++++++++........      --...++.||+
T Consensus       110 evi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~  156 (300)
T COG0031         110 EVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYE  156 (300)
T ss_pred             EEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHh
Confidence            9999998 3436779999999999996522      24456666664

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=93.11  E-value=0.5  Score=45.67  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhh
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~~~~~~~e~i  176 (313)
                      ..|+| .+|++||- .++..|++..+...      |+++.+...+.-    ...+.    +.+.|...+  ...++++++
T Consensus       144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~  214 (304)
T TIGR00658       144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAV  214 (304)
T ss_pred             CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence            44788 99999995 78889999999888      998776654321    11111    344553210  145889999


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      ++||+|..-+
T Consensus       215 ~~aDvvy~~~  224 (304)
T TIGR00658       215 KGADVIYTDV  224 (304)
T ss_pred             CCCCEEEEcC
Confidence            9999999853

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.07  E-value=0.3  Score=47.25  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ..++| .||++||-   +++..|++..+...      |+++.+...++-....  . ..+.    ...+++|++++||+|
T Consensus       152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~----~~~d~~ea~~~aDvv  217 (305)
T PRK00856        152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYG----VHTDLDEVIEDADVV  217 (305)
T ss_pred             CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceE----EECCHHHHhCCCCEE
Confidence            45888 99999996   58999999999999      9987766544321100  0 0112    245889999999998


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      ....
T Consensus       218 yt~~  221 (305)
T PRK00856        218 MMLR  221 (305)
T ss_pred             EECC
Confidence            7743

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.92  E-value=0.51  Score=47.79  Aligned_cols=73  Identities=25%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT  168 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~  168 (313)
                      .| ++|.|||.|..|-+.|..|++.      |++|++..+...                    ...+..++.|+...-++
T Consensus       140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~  212 (467)
T TIGR01318       140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC  212 (467)
T ss_pred             CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence            68 9999999999999999999998      998877765421                    12345667786432111


Q ss_pred             -c---CCHHhhhccCCEEEEcccc
Q 021356          169 -L---GDIYETISGSDLVLLLISD  188 (313)
Q Consensus       169 -~---~~~~e~i~~ADvIiLavP~  188 (313)
                       .   ...++...+.|.||+++--
T Consensus       213 ~v~~~~~~~~~~~~~D~vilAtGa  236 (467)
T TIGR01318       213 EVGRDISLDDLLEDYDAVFLGVGT  236 (467)
T ss_pred             EeCCccCHHHHHhcCCEEEEEeCC
Confidence             1   1334555689999998843

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=92.91  E-value=0.48  Score=45.97  Aligned_cols=70  Identities=14%  Similarity=0.082  Sum_probs=50.4

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-c-H----HHHHHCCceecCCCcCCHHhhhccC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-F----AEARAAGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s-~----~~A~~~G~~~~~~~~~~~~e~i~~A  179 (313)
                      .++| .+|++||- +++..|++..+...      |+++.+...++.. . .    +.+.+.|-+.   ...+++++++++
T Consensus       150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~---~~~d~~~av~~a  219 (311)
T PRK14804        150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLS---WEMNLHKAVSHA  219 (311)
T ss_pred             CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeE---EEeCHHHHhCCC
Confidence            5889 99999996 68999999999888      9988777655421 1 1    2233344221   135889999999


Q ss_pred             CEEEEcc
Q 021356          180 DLVLLLI  186 (313)
Q Consensus       180 DvIiLav  186 (313)
                      |+|..-+
T Consensus       220 Dvvy~d~  226 (311)
T PRK14804        220 DYVYTDT  226 (311)
T ss_pred             CEEEeee
Confidence            9999854

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.84  E-value=0.79  Score=43.76  Aligned_cols=90  Identities=18%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      +| .++.|+|.|.+|...++.++..      |.+|+...+. ++..+.+++.|...-   ....++.-...|+++.+...
T Consensus       165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~  233 (329)
T TIGR02822       165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAASA---GGAYDTPPEPLDAAILFAPA  233 (329)
T ss_pred             CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence            47 8999999999999999988888      9886554444 455788888887431   11111112357888877665


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEec
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .   +.+++..+.++++-.++..+
T Consensus       234 ~---~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       234 G---GLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             H---HHHHHHHHhhCCCcEEEEEe
Confidence            3   35666677788877766543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.80  E-value=0.68  Score=45.70  Aligned_cols=89  Identities=10%  Similarity=0.076  Sum_probs=54.0

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC-------------------CcccHHHHHHC----
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA----  160 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~-------------------~~~s~~~A~~~----  160 (313)
                      ...|+. ++|.|||+|-+|..+++.|...      |+ ++.+.++.                   ..+....+.+.    
T Consensus       130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n  202 (376)
T PRK08762        130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN  202 (376)
T ss_pred             HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence            356888 9999999999999999999998      87 44444432                   11111111111    


Q ss_pred             C-ce--ecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021356          161 G-FT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       161 G-~~--~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~  200 (313)
                      . +.  ......  .+.++.++++|+||.++-......++++...
T Consensus       203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~  247 (376)
T PRK08762        203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACV  247 (376)
T ss_pred             CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence            1 11  000011  1234678899999998876655556666543

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.74  E-value=1.1  Score=40.20  Aligned_cols=37  Identities=24%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .++| +++-|.|. |-+|.++++.|.+.      |++|++..|+.
T Consensus         3 ~~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK   40 (248)
T ss_pred             CCCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence            4678 99999995 89999999999988      99887766653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.70  E-value=1  Score=39.81  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEec
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLR  148 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r  148 (313)
                      +|.|||+|-+|..+++.|...      |+. +.+.++
T Consensus         1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF   31 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence            589999999999999999888      773 444443

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=92.58  E-value=0.98  Score=44.41  Aligned_cols=71  Identities=13%  Similarity=0.038  Sum_probs=48.9

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhhc
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETIS  177 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~~~~~~~e~i~  177 (313)
                      .|+| .+|++||- .++..|++..+...      |++|.+...+.-    ...+.    +...|...+  ...+++|+++
T Consensus       151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~  221 (338)
T PRK02255        151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK  221 (338)
T ss_pred             CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence            5889 99999996 57888888888888      998776654421    12222    223453210  1458899999


Q ss_pred             cCCEEEEcc
Q 021356          178 GSDLVLLLI  186 (313)
Q Consensus       178 ~ADvIiLav  186 (313)
                      ++|+|..-+
T Consensus       222 ~aDvvy~~~  230 (338)
T PRK02255        222 DADFVYTDV  230 (338)
T ss_pred             CCCEEEEcc
Confidence            999999843

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=92.54  E-value=1  Score=45.15  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=20.3

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDS  133 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~  133 (313)
                      -||+|||. |.+|.++|-.|...
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~   67 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASG   67 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhc
Confidence            79999999 99999999998766

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=92.47  E-value=0.26  Score=48.24  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             EEEEEc-ccchHHHHHHHHHhchhhhcCCcE---EEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEEEcc
Q 021356          113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +|+||| .|..|..+.+.|.+.      ++.   +.+..+..+...... ..|  ....   ..+. +.++++|+|++++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~---~~~~-~~~~~~D~v~~a~   69 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT-FKGKELEVN---EAKI-ESFEGIDIALFSA   69 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee-eCCeeEEEE---eCCh-HHhcCCCEEEECC
Confidence            589999 899999999999886      553   222222211111111 112  1110   0122 3458999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |.....++..++.+   .|..|+|.++.
T Consensus        70 g~~~s~~~a~~~~~---~G~~VID~ss~   94 (339)
T TIGR01296        70 GGSVSKEFAPKAAK---CGAIVIDNTSA   94 (339)
T ss_pred             CHHHHHHHHHHHHH---CCCEEEECCHH
Confidence            99877777766543   57888888763

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.45  E-value=0.28  Score=46.43  Aligned_cols=69  Identities=17%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~i~~ADvIiLavP  187 (313)
                      |+|.|+| .|.+|..+++.|.+.      |++|++..|+.++. ......|+....+..   .++.++++++|+|+-+..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            5899999 699999999999999      99987777753321 111223432111112   235677899999988654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=92.43  E-value=0.7  Score=44.30  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=49.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-----C----ceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----G----FTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-----G----~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ++|+|||.|.+--+.....+..    +.+. .+.+.|.++...+.+++.     |    ..-......+...-+.+.|+|
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~----~~~~-~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV  196 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQH----GPGA-RVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV  196 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--H----TT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHh----CCCC-eEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence            5999999999987776666554    1133 345667766555544321     1    110000011222235789999


Q ss_pred             EEcccch----hHHHHHHHHHhcCCCCcEEE--EecCch
Q 021356          183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL  215 (313)
Q Consensus       183 iLavP~~----a~~~vi~ei~~~mk~gaiLi--d~~Gv~  215 (313)
                      +++.-..    .-.++++.+.++|++|++|+  -.+|..
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR  235 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR  235 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence            9988766    44569999999999999887  456653

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=92.43  E-value=0.47  Score=46.53  Aligned_cols=71  Identities=17%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      .|+| .+|++||-+  ++..|++..+...      |+++.+...+.-    ...    +.+.+.|...+  ...++++++
T Consensus       153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~  223 (334)
T PRK01713        153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV  223 (334)
T ss_pred             CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence            5788 999999986  6788888888888      998776654321    111    22344563211  146899999


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      ++||+|..-+
T Consensus       224 ~~aDvVyt~~  233 (334)
T PRK01713        224 KGVDFVHTDV  233 (334)
T ss_pred             CCCCEEEEcc
Confidence            9999999843

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.21  E-value=0.56  Score=46.71  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++.+ ++|.|||+|-.|.+.++.|++.      |++|...+...........+.|+....+  ....+.++..|+||..
T Consensus         3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~s   72 (438)
T PRK03806          3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVAS   72 (438)
T ss_pred             ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEEC
Confidence            4567 9999999999999999999998      9987655533222111122336542111  1223456788987764

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.09  E-value=0.76  Score=45.22  Aligned_cols=88  Identities=11%  Similarity=0.115  Sum_probs=53.2

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------------------cccHHHHH---H--
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---A--  159 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~---~--  159 (313)
                      ...|+. .+|.|||+|-+|..++++|...      |+ ++.+.++..                   .+....++   +  
T Consensus        23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n   95 (355)
T PRK05597         23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN   95 (355)
T ss_pred             HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence            467888 9999999999999999999888      77 333333211                   01111111   1  


Q ss_pred             CCceec--CCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       160 ~G~~~~--~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                      ..+..+  ....  .+..+.++++|+|+.++-.-....++++..
T Consensus        96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c  139 (355)
T PRK05597         96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA  139 (355)
T ss_pred             CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence            111100  0011  123568899999999987665555666543

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.08  E-value=1.2  Score=43.53  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=47.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhh--hcCC--cEEEEE-ecCCc----c--cH----HHHHHCCceec-----CCCcCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSD--IVVKVG-LRKGS----R--SF----AEARAAGFTEE-----NGTLGD  171 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~--~~~G--~~Vivg-~r~~~----~--s~----~~A~~~G~~~~-----~~~~~~  171 (313)
                      .+|+|+|+|++|..+++.|.+.-+.  ...|  ++|+.. +++..    +  ..    +...+.|-...     .....+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            6899999999999999998773110  0114  444322 22110    0  01    11111121100     000125


Q ss_pred             HHhhh--ccCCEEEEcccchhHHHHHHHHH
Q 021356          172 IYETI--SGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       172 ~~e~i--~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                      .+|++  .++|+||=++++....+++.+.+
T Consensus        83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al  112 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL  112 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcHHHHHHHHHHH
Confidence            66777  58999999998776666665544

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.07  E-value=0.46  Score=51.47  Aligned_cols=65  Identities=22%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             CEEEEEcccchHHHH-HHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~Al-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++|.|||+|-.|.+. |+.|++.      |++|.+.+.......+..++.|+...   .....+.+.++|+||+.
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S   70 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS   70 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence            569999999999997 9999999      99986655443333333445676532   22234667889999874

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=92.02  E-value=0.58  Score=45.88  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhh
Q 021356          106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~~~~~~~e~  175 (313)
                      ..|+| .||++||-+  ++..|++..+...      |+++.+...+.-    ...+    .+++.|...+  ...+++++
T Consensus       151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea  221 (331)
T PRK02102        151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEA  221 (331)
T ss_pred             CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence            45888 999999987  7889999988888      998766654321    1111    2334553210  14588999


Q ss_pred             hccCCEEEEcc
Q 021356          176 ISGSDLVLLLI  186 (313)
Q Consensus       176 i~~ADvIiLav  186 (313)
                      +++||+|..-+
T Consensus       222 ~~~aDvvyt~~  232 (331)
T PRK02102        222 VKGADVIYTDV  232 (331)
T ss_pred             hCCCCEEEEcC
Confidence            99999999854

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.99  E-value=0.51  Score=47.18  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      -+|.|||+|-.|.++|+.|++.      |++|.+.+..... ..+..++  .|+....+  ....+.+.++|+||..
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s   75 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS   75 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence            5899999999999999999999      9987665544322 2222222  26543110  1224567789998884

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=91.88  E-value=0.68  Score=45.27  Aligned_cols=95  Identities=18%  Similarity=0.134  Sum_probs=52.7

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCcee---------cC------CC---cC---
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------EN------GT---LG---  170 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~---------~~------~~---~~---  170 (313)
                      +|||+|+|.||..+.+.|.+.  +.+.+++|.-.++. +.+......+++-+.         ++      +.   +.   
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP   78 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence            589999999999999998764  00113565443432 223333443333110         00      00   01   


Q ss_pred             CHHhh-h--ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          171 DIYET-I--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       171 ~~~e~-i--~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++++ .  .+.|+|+.|++.....+.....   ++.|+.+++.+
T Consensus        79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~S  120 (325)
T TIGR01532        79 TPEALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFS  120 (325)
T ss_pred             ChhhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEec
Confidence            22221 1  4899999999988776655543   34566655544

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.87  E-value=0.4  Score=49.59  Aligned_cols=75  Identities=20%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC--------------------cccHHHHHHCCceecC
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEEN  166 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~~  166 (313)
                      .-.| ++|.|||.|.+|-+.|..|++.      |++|++..+..                    ....+.+++.|+...-
T Consensus       134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~  206 (564)
T PRK12771        134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL  206 (564)
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence            4578 9999999999999999999999      99887765321                    1223456777864211


Q ss_pred             CC-c---CCHHhhhccCCEEEEcccc
Q 021356          167 GT-L---GDIYETISGSDLVLLLISD  188 (313)
Q Consensus       167 ~~-~---~~~~e~i~~ADvIiLavP~  188 (313)
                      ++ .   .+.++.-.+.|+|++++-.
T Consensus       207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~  232 (564)
T PRK12771        207 GVRVGEDITLEQLEGEFDAVFVAIGA  232 (564)
T ss_pred             CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence            11 1   1233444568999998853

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=91.82  E-value=0.7  Score=43.03  Aligned_cols=88  Identities=15%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC------------------C-cccHH---HHHHC-
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------G-SRSFA---EARAA-  160 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~------------------~-~~s~~---~A~~~-  160 (313)
                      ..-|++ .+|.|||+|-+|..+++.|...      |. ++.+.++.                  + .+...   ...+. 
T Consensus        19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in   91 (240)
T TIGR02355        19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN   91 (240)
T ss_pred             HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence            467888 9999999999999999999988      76 33333221                  0 01110   11111 


Q ss_pred             -Cce--ecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       161 -G~~--~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                       .+.  ..+...  .+..+.++++|+||.++-.......+++..
T Consensus        92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~  135 (240)
T TIGR02355        92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC  135 (240)
T ss_pred             CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence             111  000011  134567899999999997766666777654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=91.82  E-value=0.65  Score=45.10  Aligned_cols=67  Identities=9%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021356          106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      ..++| .+|++||-   +++..|++..+...      |+ ++.+.-.++-...+ -....+..    ..+++++++++|+
T Consensus       153 g~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~~p~~-~~~~~~~~----~~d~~ea~~~aDv  220 (310)
T PRK13814        153 PHWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSLLPDK-VGNDSIKK----FTELKPSLLNSDV  220 (310)
T ss_pred             CCcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCcccCcCc-cccceEEE----EcCHHHHhCCCCE
Confidence            34788 99999997   69999999999998      98 77666543211000 00012332    4588999999999


Q ss_pred             EEE
Q 021356          182 VLL  184 (313)
Q Consensus       182 IiL  184 (313)
                      |..
T Consensus       221 vy~  223 (310)
T PRK13814        221 IVT  223 (310)
T ss_pred             EEE
Confidence            987

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=91.80  E-value=0.55  Score=46.56  Aligned_cols=89  Identities=18%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC--Cc-----------------ccHHHH---HH--
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--GS-----------------RSFAEA---RA--  159 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~--~~-----------------~s~~~A---~~--  159 (313)
                      ..-|.. .+|.|||+|-+|..+++.|...      |+ ++.+.++.  ..                 +....+   .+  
T Consensus        36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n  108 (370)
T PRK05600         36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ  108 (370)
T ss_pred             HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence            467888 9999999999999999999988      77 44444332  00                 100000   01  


Q ss_pred             CCc--eecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021356          160 AGF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       160 ~G~--~~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~  200 (313)
                      ..+  .......  .+..+.++++|+|+-|+-.-....+++++..
T Consensus       109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~  153 (370)
T PRK05600        109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE  153 (370)
T ss_pred             CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence            111  1100111  2345688999999988887776667776543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=91.77  E-value=1.5  Score=39.85  Aligned_cols=93  Identities=19%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--hccCCEEEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL  184 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--i~~ADvIiL  184 (313)
                      -+| .+|.|.|.|.+|.+..+.++..      |.+ |+ ..+.+.+..+.+.+.|..+  ......++.  -...|+|+-
T Consensus        96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi-~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~  165 (277)
T cd08255          96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVV-GVDPDAARRELAEALGPAD--PVAADTADEIGGRGADVVIE  165 (277)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEE-EECCCHHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEE
Confidence            367 8999999999999999999998      887 54 4444444456777777221  011111111  135899988


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++....   .+.+....++++..+++.+.
T Consensus       166 ~~~~~~---~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         166 ASGSPS---ALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             ccCChH---HHHHHHHHhcCCcEEEEEec
Confidence            776433   45566667777776665543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=91.74  E-value=0.31  Score=47.55  Aligned_cols=71  Identities=20%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--Cc--eecC--CCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GF--TEEN--GTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~--~~~~--~~~~~~~e~i~~ADvIiLa  185 (313)
                      +||+|||.|.+|.++|..|...    +.+-++++.+.......-.+.+.  ..  ...+  -......+.+++||+|++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit   76 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT   76 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence            5899999999999999999554    11224544444322222122111  10  0000  0010125678999999997


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      .
T Consensus        77 A   77 (313)
T COG0039          77 A   77 (313)
T ss_pred             C
Confidence            7

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=91.73  E-value=0.62  Score=45.28  Aligned_cols=85  Identities=19%  Similarity=0.267  Sum_probs=57.8

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHH----HHCC--ceecCCCcCCHHhhh
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYETI  176 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~~~~~~~e~i  176 (313)
                      |+| +|++.||=| ||+.|+..+....      |+++.+...++    ++-.+.|    .+.|  +..    ..++++++
T Consensus       151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv  219 (310)
T COG0078         151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV  219 (310)
T ss_pred             ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence            788 999999966 8999998888888      99988875542    2333333    3334  332    45889999


Q ss_pred             ccCCEEEEcccchhH--HHHHHHHHhcCC
Q 021356          177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK  203 (313)
Q Consensus       177 ~~ADvIiLavP~~a~--~~vi~ei~~~mk  203 (313)
                      ++||+|.-=+..+.-  .+..++....++
T Consensus       220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~  248 (310)
T COG0078         220 KGADVVYTDVWVSMGEEAEAEERRIAFLP  248 (310)
T ss_pred             CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence            999999987765542  223444444444

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=91.71  E-value=1.3  Score=45.08  Aligned_cols=71  Identities=15%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             cCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021356          108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       108 l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      |+| +||++||-   +++..|++..+...+     |+++.+...++-    ...+.+.+.|...+  ...+++|++++||
T Consensus       239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD  310 (429)
T PRK11891        239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD  310 (429)
T ss_pred             cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence            789 99999998   488999999876531     888766654332    22344444453211  1458899999999


Q ss_pred             EEEEcc
Q 021356          181 LVLLLI  186 (313)
Q Consensus       181 vIiLav  186 (313)
                      +|....
T Consensus       311 VVYt~~  316 (429)
T PRK11891        311 VVYATR  316 (429)
T ss_pred             EEEEcC
Confidence            999844

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=91.70  E-value=0.44  Score=46.39  Aligned_cols=21  Identities=29%  Similarity=0.289  Sum_probs=19.9

Q ss_pred             EEEEEcccchHHHHHHHHHhc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      +|.|||+|-+|..+|++|..+
T Consensus         1 kVLIvGaGGLGs~vA~~La~a   21 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGW   21 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHc
Confidence            588999999999999999998

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=91.63  E-value=0.77  Score=45.11  Aligned_cols=71  Identities=20%  Similarity=0.202  Sum_probs=50.1

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      .++| .+|++||-+  ++..|+...+...      |+++.+...+.-    +..    +.+++.|...+  ...++++++
T Consensus       153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~  223 (336)
T PRK03515        153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV  223 (336)
T ss_pred             CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence            5788 999999976  6899999999888      998776654321    111    23344563211  146899999


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      +++|+|..-+
T Consensus       224 ~~aDvvytd~  233 (336)
T PRK03515        224 KGADFIYTDV  233 (336)
T ss_pred             CCCCEEEecC
Confidence            9999999863

>PRK06392 homoserine dehydrogenase; Provisional

Probab=91.56  E-value=0.73  Score=45.05  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ++|+|||+|++|+.+++.|++.
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~   22 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSR   22 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC
Confidence            4899999999999999998773

>PLN02342 ornithine carbamoyltransferase

Probab=91.56  E-value=0.73  Score=45.54  Aligned_cols=71  Identities=23%  Similarity=0.265  Sum_probs=50.3

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCc--eecCCCcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGF--TEENGTLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~--~~~~~~~~~~~e~i~~  178 (313)
                      ..|+| .||++||-+ ++..|++..+...      |+++.+...+.    .+..+.+++.|.  +.   ...++++++++
T Consensus       190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~---~~~d~~eav~~  259 (348)
T PLN02342        190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIE---ITNDPAEAVKG  259 (348)
T ss_pred             CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEE---EEcCHHHHhCC
Confidence            45889 999999964 6888888888888      99877665432    122334444442  11   14588999999


Q ss_pred             CCEEEEcc
Q 021356          179 SDLVLLLI  186 (313)
Q Consensus       179 ADvIiLav  186 (313)
                      ||+|..-+
T Consensus       260 aDVvy~~~  267 (348)
T PLN02342        260 ADVVYTDV  267 (348)
T ss_pred             CCEEEECC
Confidence            99999874

>PRK01581 speE spermidine synthase; Validated

Probab=91.54  E-value=1  Score=44.97  Aligned_cols=133  Identities=14%  Similarity=0.182  Sum_probs=74.9

Q ss_pred             cccccchhhh-hhcccccchhhhhhcCCCcccc-------------cccccCCCCEEEEEcccchHHHHHHHHHhchhhh
Q 021356           72 LDFETSVFKK-DAISLANRDEFIVRGGRDLFKL-------------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEA  137 (313)
Q Consensus        72 ~~f~~~~~~~-~~~~~~~~~e~~v~~G~w~f~~-------------~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~  137 (313)
                      +|-.++.|+. +.+...+|.  .+-.|.|+++-             ++......++|.|||.|. |..+...++..    
T Consensus       100 l~~~~S~yQ~I~I~et~~~~--L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGd-G~tlrelLk~~----  172 (374)
T PRK01581        100 LFAEKSNYQNINLLQVSDIR--LYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGD-GLALREVLKYE----  172 (374)
T ss_pred             EEecCCCCceEEEEEcCCEE--EEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCH-HHHHHHHHhcC----
Confidence            4555555654 222333442  36677776641             233344449999999983 55555555443    


Q ss_pred             cCCcEEEEEecCCcccHHHHHHC---------CceecCC--CcCCHHhhh----ccCCEEEEcccchhH--------HHH
Q 021356          138 KSDIVVKVGLRKGSRSFAEARAA---------GFTEENG--TLGDIYETI----SGSDLVLLLISDAAQ--------ADN  194 (313)
Q Consensus       138 ~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~--~~~~~~e~i----~~ADvIiLavP~~a~--------~~v  194 (313)
                        +...+...+.++...+.|++.         .+.+..-  ...|..+.+    ..-|+||+-+|+...        .++
T Consensus       173 --~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EF  250 (374)
T PRK01581        173 --TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSEL  250 (374)
T ss_pred             --CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHH
Confidence              443456666777777777752         1100000  012333333    346999999875421        347


Q ss_pred             HHHHHhcCCCCcEEEEecC
Q 021356          195 YEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       195 i~ei~~~mk~gaiLid~~G  213 (313)
                      ++.+...|+||-+++.-++
T Consensus       251 y~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        251 FARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             HHHHHHhcCCCcEEEEecC
Confidence            7788899999998764443

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=91.53  E-value=0.71  Score=46.38  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             ccCCCCEEEEEcc-----c---chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021356          107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG  170 (313)
Q Consensus       107 ~l~GikkIgIIG~-----G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~  170 (313)
                      .++| +||+|+|-     |   ++..|++..+...      |+++.+...++    ++..+.    +.+.|...+  ...
T Consensus       184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~  254 (395)
T PRK07200        184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN  254 (395)
T ss_pred             ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence            3777 89999986     4   5678988888888      99887776542    121222    344553210  146


Q ss_pred             CHHhhhccCCEEEEcc
Q 021356          171 DIYETISGSDLVLLLI  186 (313)
Q Consensus       171 ~~~e~i~~ADvIiLav  186 (313)
                      +++|++++||+|..-+
T Consensus       255 d~~eav~~aDvVYtd~  270 (395)
T PRK07200        255 SMEEAFKDADIVYPKS  270 (395)
T ss_pred             CHHHHhCCCCEEEEcC
Confidence            8999999999999874

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.45  E-value=1.8  Score=42.75  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhh----h--ccCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYET----I--SGSD  180 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~----i--~~AD  180 (313)
                      -.| .++.|.|.|.+|...++.++..      |.++++..+.+++..+.+++.|+..-+... .+..+.    .  ...|
T Consensus       184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D  256 (393)
T TIGR02819       184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD  256 (393)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence            357 8999999999999999999998      987666555555667788888873211000 122222    2  2479


Q ss_pred             EEEEcccchhH-----------HHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~-----------~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++-....           ...+++..+.++++-.++.++
T Consensus       257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            99988875321           235666667777776665443

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02477 glutamate dehydrogenase

Probab=91.36  E-value=0.38  Score=48.54  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .+|+| ++|+|.|+|++|...|+.|.+.      |.+|+...+
T Consensus       202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVVaVsD  237 (410)
T PLN02477        202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIVAVSD  237 (410)
T ss_pred             CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEC
Confidence            47999 9999999999999999999998      988763333

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=91.32  E-value=0.84  Score=42.29  Aligned_cols=88  Identities=18%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhc---cCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETIS---GSD  180 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~---~AD  180 (313)
                      ..| ++|.-||+|. | .++..+.+.      |...+++.+.++...+.|++.    ++.+       ..++..   ..|
T Consensus       118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~-------~~~~~~~~~~fD  181 (250)
T PRK00517        118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL-------NVYLPQGDLKAD  181 (250)
T ss_pred             CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc-------eEEEccCCCCcC
Confidence            467 9999999998 5 455556665      654457778776665555432    3311       001111   579


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +|+..........+++++...||||..++.+
T Consensus       182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        182 VIVANILANPLLELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9887665555667888999999999887754

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=91.29  E-value=1.3  Score=43.97  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=81.9

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---------Hhhhc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---------YETIS  177 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---------~e~i~  177 (313)
                      -=.| .+++|+|+|-+|-+..++++..      |-..+++.+.++...+.|++.|.++-   ..+.         .++-.
T Consensus       183 v~~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~  252 (366)
T COG1062         183 VEPG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTD  252 (366)
T ss_pred             CCCC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcC
Confidence            3457 8999999999999999999998      88778899998888999999998751   2221         12333


Q ss_pred             -cCCEEEEcccchhHHHHHHHHHhcC-CCCcEEE-EecCc--hhhhhhhcccCCCCCccEE-----EeccCCCchhHHHH
Q 021356          178 -GSDLVLLLISDAAQADNYEKIFSCM-KPNSILG-LSHGF--LLGHLQSIGLDFPKNIGVI-----AVCPKGMGPSVRRL  247 (313)
Q Consensus       178 -~ADvIiLavP~~a~~~vi~ei~~~m-k~gaiLi-d~~Gv--~l~~~~~~~~~l~~~i~vV-----~vhPn~pg~~~r~l  247 (313)
                       .+|..|-++-...   +++.-+... +-|..++ =+.+.  .+. +....+.  ....+.     ..-|..--+.+-++
T Consensus       253 gG~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~~~lv--~gr~~~Gs~~G~~~p~~diP~lv~~  326 (366)
T COG1062         253 GGADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRPFQLV--TGRVWKGSAFGGARPRSDIPRLVDL  326 (366)
T ss_pred             CCCCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cChHHee--ccceEEEEeecCCccccchhHHHHH
Confidence             7899998887655   444222222 3465544 23322  110 1110011  111222     25666666677889


Q ss_pred             HHhcc
Q 021356          248 YVQGK  252 (313)
Q Consensus       248 f~~G~  252 (313)
                      |.+||
T Consensus       327 y~~Gk  331 (366)
T COG1062         327 YMAGK  331 (366)
T ss_pred             HHcCC
Confidence            99885

>PRK10637 cysG siroheme synthase; Provisional

Probab=91.28  E-value=1.2  Score=45.20  Aligned_cols=82  Identities=18%  Similarity=0.138  Sum_probs=54.7

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc-eecCCCcCCHHhhhccCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .-+|.| +++.|||-|.++..=++.|.+.      |.+|.+....-.+......+.|- .-..... . ++-++++|+|+
T Consensus         7 ~~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~   77 (457)
T PRK10637          7 FCQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAI   77 (457)
T ss_pred             EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEE
Confidence            468999 9999999999999989999888      88776654321222222223332 1111111 2 34578999999


Q ss_pred             EcccchhHHHHH
Q 021356          184 LLISDAAQADNY  195 (313)
Q Consensus       184 LavP~~a~~~vi  195 (313)
                      .|+.+....+-+
T Consensus        78 ~at~d~~~n~~i   89 (457)
T PRK10637         78 AATDDDAVNQRV   89 (457)
T ss_pred             ECCCCHHHhHHH
Confidence            999998776533

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=91.27  E-value=0.51  Score=46.98  Aligned_cols=90  Identities=18%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHH-hchhhhcCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhhccCCEEEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr-~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~-e~i~~ADvIiL  184 (313)
                      ++|||||+ |.+|+.+.+.|. +.      ++.   ++......+  ....  ..+..+.....+. + +.+++.|+++.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~~s--~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff   70 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTSQL--GQAA--PSFGGTTGTLQDAFDIDALKALDIIIT   70 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEchhh--CCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence            58999995 999999999888 44      432   222222111  0000  1110000011122 2 35789999999


Q ss_pred             cccchhHHHHHHHHHhcCCCC--cEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~g--aiLid~~Gv  214 (313)
                      +.+.....++..+..   +.|  ++|+|.++.
T Consensus        71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa   99 (366)
T TIGR01745        71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS   99 (366)
T ss_pred             cCCHHHHHHHHHHHH---hCCCCeEEEECChh
Confidence            998775555665544   358  789988764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=91.20  E-value=0.61  Score=46.30  Aligned_cols=65  Identities=26%  Similarity=0.287  Sum_probs=43.0

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +|.|||+|-.|.++|+.|++.      |++|.+.+........    ..+ ..|+...   .....+.++++|+||..-
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~sp   70 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKSP   70 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEECC
Confidence            478999999999999999999      9987666544322111    112 2466431   112245678899988843

>PRK08223 hypothetical protein; Validated

Probab=91.20  E-value=1.3  Score=42.63  Aligned_cols=28  Identities=14%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ..-|+. .+|.|||+|-+|..+++.|...
T Consensus        22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a   49 (287)
T PRK08223         22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL   49 (287)
T ss_pred             HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence            567888 9999999999999999999998

>PRK14031 glutamate dehydrogenase; Provisional

Probab=91.10  E-value=0.92  Score=46.30  Aligned_cols=36  Identities=17%  Similarity=0.064  Sum_probs=31.9

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .+|+| +++.|.|+|++|...|+.|.+.      |.+|+...+
T Consensus       224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD  259 (444)
T PRK14031        224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD  259 (444)
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence            47999 9999999999999999999999      998766444

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.89  E-value=0.95  Score=47.79  Aligned_cols=72  Identities=22%  Similarity=0.202  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT  168 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~  168 (313)
                      .| ++|+|||.|..|.+.|..|++.      |++|++..+...                    ...+...+.|+...-++
T Consensus       326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~  398 (654)
T PRK12769        326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC  398 (654)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence            58 9999999999999999999999      999887765421                    01344556675321111


Q ss_pred             ----cCCHHhhhccCCEEEEccc
Q 021356          169 ----LGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       169 ----~~~~~e~i~~ADvIiLavP  187 (313)
                          ..+.+++..+.|.|++++-
T Consensus       399 ~v~~~i~~~~~~~~~DavilAtG  421 (654)
T PRK12769        399 EVGKDISLESLLEDYDAVFVGVG  421 (654)
T ss_pred             EeCCcCCHHHHHhcCCEEEEeCC
Confidence                1144555678999999873

>PRK08265 short chain dehydrogenase; Provisional

Probab=90.88  E-value=1.3  Score=40.49  Aligned_cols=38  Identities=21%  Similarity=0.074  Sum_probs=32.2

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ..++| +++-|.|. |-+|.++++.|.+.      |.+|++..|+.
T Consensus         2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~   40 (261)
T PRK08265          2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA   40 (261)
T ss_pred             CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence            45788 99999995 89999999999998      99887776653

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=90.76  E-value=1.1  Score=44.73  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ..-|.. .+|.|||+|-+|..+|++|...
T Consensus        37 q~~L~~-~~VlviG~GGlGs~va~~La~~   64 (392)
T PRK07878         37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA   64 (392)
T ss_pred             HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence            356778 9999999999999999999988

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.74  E-value=2.1  Score=41.95  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa  185 (313)
                      .| .++.|.|.|.+|...++.++..      |.+|++..+.+++..+.+++.|...--. ..+   ..+.....|+|+=+
T Consensus       178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~  249 (375)
T PLN02178        178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDT  249 (375)
T ss_pred             CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEEC
Confidence            58 9999999999999999999999      9887665544334355666777631000 011   12223457999988


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +....   .+++..+.++++-.++..
T Consensus       250 ~G~~~---~~~~~~~~l~~~G~iv~v  272 (375)
T PLN02178        250 VSAEH---ALLPLFSLLKVSGKLVAL  272 (375)
T ss_pred             CCcHH---HHHHHHHhhcCCCEEEEE
Confidence            76432   344444556666655544

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.67  E-value=2  Score=41.44  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEcc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI  186 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~i~~ADvIiLav  186 (313)
                      +| .++.|+|.|.+|...++.++..      |.++++..+.+.+....+.+.|...- +.. ...+.+.....|+|+=++
T Consensus       180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~  252 (357)
T PLN02514        180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV  252 (357)
T ss_pred             CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence            68 8999999999999999999998      98876655544333333345675310 000 001122234579999888


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ....   .+++..+.++++..++..+
T Consensus       253 g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        253 PVFH---PLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CchH---HHHHHHHHhccCCEEEEEC
Confidence            7432   3444555677777666544

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.64  E-value=2.5  Score=40.60  Aligned_cols=94  Identities=22%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hh--ccCCE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~i--~~ADv  181 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+.++..+.+++..+.+++.|...- +....+..+    ..  ...|+
T Consensus       176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~  248 (358)
T TIGR03451       176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV  248 (358)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence            57 8999999999999999999998      98533454444555677777775210 000112212    11  14688


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+=++-..   +.+++....++++-.++.++
T Consensus       249 vid~~g~~---~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       249 VIDAVGRP---ETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             EEECCCCH---HHHHHHHHHhccCCEEEEEC
Confidence            88777632   23344445566666555443

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=90.59  E-value=4.4  Score=31.94  Aligned_cols=93  Identities=17%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCC----HHhhhccCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~----~~e~i~~AD  180 (313)
                      .+ ++|.-||+|. |.-....++..     .+.+ +++.+.++...+.++    ..+.....-...+    ........|
T Consensus        19 ~~-~~vldlG~G~-G~~~~~l~~~~-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        19 PG-DVLWDIGAGS-GSITIEAARLV-----PNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             CC-CEEEEeCCCC-CHHHHHHHHHC-----CCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence            36 8999999998 43333333333     0234 467776655444432    2222100000011    122335799


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +|++..++....++++++...||||..++
T Consensus        91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li  119 (124)
T TIGR02469        91 RVFIGGSGGLLQEILEAIWRRLRPGGRIV  119 (124)
T ss_pred             EEEECCcchhHHHHHHHHHHHcCCCCEEE
Confidence            99998877777789999999999988765

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.55  E-value=3.3  Score=36.66  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      .|+| ++|.|.|. |-+|..+++.|.+.      |++|++..|+.+
T Consensus         2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN   40 (238)
T ss_pred             CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence            3678 99999995 78999999999998      999877776543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.53  E-value=1.8  Score=39.13  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .++| |++.|+| .|-+|.++|+.|.+.      |.+|++..++.
T Consensus         4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~   41 (255)
T PRK06463          4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSA   41 (255)
T ss_pred             CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCc
Confidence            4678 9999999 589999999999998      99887665544

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.50  E-value=3.7  Score=36.40  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----hccCCE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL  181 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~-----i~~ADv  181 (313)
                      .+| .+|.|.|.|.+|.++++.++..      |.+|+...+. +...+.+++.|...- +....+..+.     -...|+
T Consensus       133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~  204 (271)
T cd05188         133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV  204 (271)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence            467 8999999999999999999998      8877555443 344455555553210 0001122221     246899


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++...   ..++.....|+++..+++.+
T Consensus       205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence            99887753   23445555666666665544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06153 hypothetical protein; Provisional

Probab=90.46  E-value=1.4  Score=44.28  Aligned_cols=87  Identities=11%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC-------------------C---cccHHHH---HH
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------G---SRSFAEA---RA  159 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~-------------------~---~~s~~~A---~~  159 (313)
                      .-|++ .+|+|||+|-.|..++..|.+.      |. ++++.+..                   +   .+....+   .+
T Consensus       172 ~kL~~-~~VaIVG~GG~GS~Va~~LAR~------GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~  244 (393)
T PRK06153        172 AKLEG-QRIAIIGLGGTGSYILDLVAKT------PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN  244 (393)
T ss_pred             HHHhh-CcEEEEcCCccHHHHHHHHHHc------CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence            57788 9999999999999999999998      77 33333211                   0   0100011   11


Q ss_pred             C--CceecCCCcC-CHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          160 A--GFTEENGTLG-DIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       160 ~--G~~~~~~~~~-~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                      .  ++........ +..+.+.++|+||.|+-......++.+..
T Consensus       245 in~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a  287 (393)
T PRK06153        245 MRRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYL  287 (393)
T ss_pred             hCCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence            1  1221111111 22246789999999999888877777544

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.42  E-value=0.91  Score=44.72  Aligned_cols=123  Identities=19%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             hhhhhhcccccchhhhhhcCCC--ccc----c---------------cc---cccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356           78 VFKKDAISLANRDEFIVRGGRD--LFK----L---------------LP---DAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus        78 ~~~~~~~~~~~~~e~~v~~G~w--~f~----~---------------~~---~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      +.+..+++-.+|.++++-..++  ..+    +               ++   .--+| +.+||+|+|-+|.=-.+..++.
T Consensus       126 ~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG-~~vgI~GlGGLGh~aVq~AKAM  204 (360)
T KOG0023|consen  126 VYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPG-KWVGIVGLGGLGHMAVQYAKAM  204 (360)
T ss_pred             cccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCC-cEEEEecCcccchHHHHHHHHh
Confidence            3445667778888887665555  111    0               10   11178 9999999988776666777777


Q ss_pred             hhhhcCCcEEEEEecCCcccHHHHHH-CC---ceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          134 LAEAKSDIVVKVGLRKGSRSFAEARA-AG---FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       134 ~~~~~~G~~Vivg~r~~~~s~~~A~~-~G---~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                            |++|++..+.+.+ .+++.+ .|   |++--.+..-.+++...-|.++-+++.- ...-++....+||++-.|+
T Consensus       205 ------G~rV~vis~~~~k-keea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V  276 (360)
T KOG0023|consen  205 ------GMRVTVISTSSKK-KEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLV  276 (360)
T ss_pred             ------CcEEEEEeCCchh-HHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEE
Confidence                  9998766555323 334433 44   2320000001223444456655555532 1223444555565554444

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=90.38  E-value=0.73  Score=41.97  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=47.0

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhh-cc
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~----~~e~i-~~  178 (313)
                      ....+ |+|.|+| .|.+|..+++.|.+.      |++|+...|...+....... .++........+    +.+.+ .+
T Consensus        13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~   85 (251)
T PLN00141         13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD   85 (251)
T ss_pred             ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence            45567 9999999 599999999999998      99887666653321111111 122110011222    33455 58


Q ss_pred             CCEEEEcccc
Q 021356          179 SDLVLLLISD  188 (313)
Q Consensus       179 ADvIiLavP~  188 (313)
                      .|+|+.+.+.
T Consensus        86 ~d~vi~~~g~   95 (251)
T PLN00141         86 SDAVICATGF   95 (251)
T ss_pred             CCEEEECCCC
Confidence            9999988654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=90.31  E-value=2  Score=43.35  Aligned_cols=96  Identities=14%  Similarity=0.051  Sum_probs=64.1

Q ss_pred             cccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021356          106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~  175 (313)
                      +.++| ++|+|.|+          .+-+-.++..|++.      |.+|.+.+..-. .....+..+...    . + ..+
T Consensus       310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~~----~-~-~~~  375 (425)
T PRK15182        310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGIIP----V-S-EVK  375 (425)
T ss_pred             CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCccc----c-h-hhh
Confidence            35789 99999998          56777888888888      998776643211 111112234321    0 1 234


Q ss_pred             hccCCEEEEcccchhHHHH-HHHHHhcCCCCcEEEEecCch
Q 021356          176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~v-i~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +++||+|++++.-....++ ++++...|+...+|+|..++.
T Consensus       376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~  416 (425)
T PRK15182        376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVL  416 (425)
T ss_pred             hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCC
Confidence            7789999999998877653 556666677556888977664

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=90.30  E-value=1.9  Score=40.96  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .++.|.|.|.+|...++.++..      |.++++..+.+++..+.+++.|.
T Consensus       160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga  206 (347)
T PRK10309        160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA  206 (347)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence            57 8999999999999999999998      98754555544455556666664

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.29  E-value=2.4  Score=40.04  Aligned_cols=93  Identities=20%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHH---hhhc--cCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD  180 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~---e~i~--~AD  180 (313)
                      .+| .+|.|+|.|.+|...++.++..      |.+ |++ ...+++..+.+++.|...- +....+.+   +...  ..|
T Consensus       162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~-~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d  233 (339)
T cd08239         162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIG-VDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD  233 (339)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence            358 9999999999999999999998      987 654 4444455667777775210 00000111   2222  578


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +|+-++.....   +++....++++..++..
T Consensus       234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         234 VAIECSGNTAA---RRLALEAVRPWGRLVLV  261 (339)
T ss_pred             EEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence            88888775432   33334455666555543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=89.94  E-value=1.1  Score=44.48  Aligned_cols=72  Identities=13%  Similarity=0.093  Sum_probs=48.6

Q ss_pred             cccCCCCEEEEEccc--------chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCc
Q 021356          106 DAFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL  169 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~  169 (313)
                      ..|+| .||+|+|.|        ++..|++..+...      |+++.+...++    ++..+.    +.+.|...+  ..
T Consensus       166 ~~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~  236 (357)
T TIGR03316       166 ENLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IV  236 (357)
T ss_pred             cccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EE
Confidence            34778 899999864        4457888888888      99887775542    122222    334553211  14


Q ss_pred             CCHHhhhccCCEEEEcc
Q 021356          170 GDIYETISGSDLVLLLI  186 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLav  186 (313)
                      .+++|+++++|+|..-.
T Consensus       237 ~d~~ea~~~aDvvyt~~  253 (357)
T TIGR03316       237 NSMDEAFKDADIVYPKS  253 (357)
T ss_pred             cCHHHHhCCCCEEEECC
Confidence            68999999999999874

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=89.91  E-value=2.8  Score=40.09  Aligned_cols=161  Identities=16%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhhccCCE
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +++|+|+|+ |.||+.+.+.+...     .++++.-+.++.....     .+.   ...|+..    ..+......++|+
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV   72 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV   72 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence            389999997 99999999999876     2466555554432211     011   1122321    2345677889999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh--HHH-HHHhcccccCCC
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRR-LYVQGKEINGAG  258 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~-lf~~G~e~~g~G  258 (313)
                      +|==+-|....++++-...+=  -.+|+=+.|++-..++... .+.+.+.+| ..||+.--.  +-. +-...+-+.++.
T Consensus        73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l~-~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D  148 (266)
T COG0289          73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKLR-EAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD  148 (266)
T ss_pred             EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHHH-HHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence            999888888877777554432  2367778898643333211 122334443 557665433  111 111111112233


Q ss_pred             ceEEEEecc-----CCCHHHHHHHHHHHHHcC
Q 021356          259 INSSFAVHQ-----DVDGRATNVALGWSVALG  285 (313)
Q Consensus       259 ~~~iitp~~-----d~~~ea~e~a~~L~~alG  285 (313)
                      +-. |--|.     -.++.|+.+++.+.+..|
T Consensus       149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~  179 (266)
T COG0289         149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG  179 (266)
T ss_pred             EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence            332 33332     456889999999999999

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=89.89  E-value=1.1  Score=45.33  Aligned_cols=38  Identities=24%  Similarity=0.380  Sum_probs=33.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .+|+| ++|+|=|+||.|.-.|+.|.+.      |.+|+...+..
T Consensus       203 ~~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~  240 (411)
T COG0334         203 DDLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSK  240 (411)
T ss_pred             CCcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCC
Confidence            35999 9999999999999999999988      99877666653

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=89.88  E-value=0.94  Score=45.38  Aligned_cols=64  Identities=20%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             EEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       113 kIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +|-|||.|-.|.+ +|+.|++.      |++|.+.+.......+..++.|+...   .....+.++++|+||+.
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s   65 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS   65 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence            3779999999998 99999999      99986655443222233445576531   11223567789999884

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK06057 short chain dehydrogenase; Provisional

Probab=89.86  E-value=1.9  Score=38.96  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=31.5

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ..++| ++|-|+|. |-||.++++.+.+.      |++|++..++
T Consensus         3 ~~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~   40 (255)
T PRK06057          3 QRLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID   40 (255)
T ss_pred             ccCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence            34788 99999996 89999999999998      9988766654

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.68  E-value=2.9  Score=40.38  Aligned_cols=92  Identities=17%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV  182 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~ADvI  182 (313)
                      +| .+|.|+|.|.+|...++.++..      |...++..+.++...+.+++.|...- +....+..+.+.     ..|+|
T Consensus       191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v  263 (371)
T cd08281         191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYA  263 (371)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence            57 8999999999999999999998      98423444444555677777776310 000011112121     47888


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEE
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                      +-++....   .++.....++++-.++.
T Consensus       264 id~~G~~~---~~~~~~~~l~~~G~iv~  288 (371)
T cd08281         264 FEMAGSVP---ALETAYEITRRGGTTVT  288 (371)
T ss_pred             EECCCChH---HHHHHHHHHhcCCEEEE
Confidence            88875322   33333444555555443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.66  E-value=1.3  Score=39.77  Aligned_cols=38  Identities=21%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ..++| +++-|.|. |.+|.++++.|.+.      |++|++..+..
T Consensus         3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~   41 (262)
T PRK13394          3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ   41 (262)
T ss_pred             ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence            35778 99999996 99999999999998      99887666553

>PRK07411 hypothetical protein; Validated

Probab=89.63  E-value=1.2  Score=44.49  Aligned_cols=88  Identities=11%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecC------------------C-cccHHHHH---H--
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRK------------------G-SRSFAEAR---A--  159 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~------------------~-~~s~~~A~---~--  159 (313)
                      ...|+. .+|.|||+|-+|..++++|...      |+. +.+.+..                  + .+....++   +  
T Consensus        33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n  105 (390)
T PRK07411         33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN  105 (390)
T ss_pred             HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence            467888 9999999999999999999998      773 3333221                  0 01111111   1  


Q ss_pred             CCc--eecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          160 AGF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       160 ~G~--~~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                      ..+  .......  .+..+.+.++|+|+.++-.-....++++..
T Consensus       106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~  149 (390)
T PRK07411        106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC  149 (390)
T ss_pred             CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence            111  0000011  134568899999999988777666777654

>PRK05867 short chain dehydrogenase; Provisional

Probab=89.58  E-value=1.1  Score=40.45  Aligned_cols=38  Identities=16%  Similarity=0.155  Sum_probs=32.2

Q ss_pred             ccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       105 ~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +..++| +++-|.|. |-||.++++.|.+.      |.+|++..+.
T Consensus         4 ~~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~   42 (253)
T PRK05867          4 LFDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH   42 (253)
T ss_pred             cccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence            346789 99999996 79999999999998      9998776654

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=89.52  E-value=2.1  Score=41.46  Aligned_cols=90  Identities=9%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~  188 (313)
                      .+|.|.| .|.-|...-+.+++.      |-+++.|...+..   ...-.|+..    ..++.|+-..  .|+.++++|.
T Consensus        13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa   79 (300)
T PLN00125         13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP   79 (300)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence            6788889 889999999999999      9888888876520   011245553    4578887765  7999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ....+.+++.... .-..+++.++||.
T Consensus        80 ~~v~~al~e~~~~-Gvk~~vIisaGf~  105 (300)
T PLN00125         80 PFAAAAILEAMEA-ELDLVVCITEGIP  105 (300)
T ss_pred             HHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence            9999988876652 2234778899985

>PRK05717 oxidoreductase; Validated

Probab=89.35  E-value=1.8  Score=39.07  Aligned_cols=37  Identities=22%  Similarity=0.048  Sum_probs=31.2

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      -.|+| |++-|+| .|.+|.++|+.|.+.      |.+|++..+.
T Consensus         6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~   43 (255)
T PRK05717          6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD   43 (255)
T ss_pred             cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence            46789 9999999 589999999999988      9887766544

>PRK07825 short chain dehydrogenase; Provisional

Probab=89.33  E-value=2  Score=39.26  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .++| +++-|.|. |-+|.++++.|.+.      |.+|++..|+
T Consensus         2 ~~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~   38 (273)
T PRK07825          2 DLRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLD   38 (273)
T ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECC
Confidence            4678 99999995 79999999999998      9988776654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.29  E-value=2.2  Score=39.79  Aligned_cols=94  Identities=18%  Similarity=0.133  Sum_probs=56.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hhccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~i~~ADvIi  183 (313)
                      +| .+|.|+|.|.+|.++++.++..      |.++++....+++..+.+.+.|...- +....+..+    .-+..|+++
T Consensus       159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~  231 (334)
T cd08234         159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVI  231 (334)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEE
Confidence            57 8999999999999999999998      98733444444444555556664210 000011110    124689999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      -++...   ..+.+....|+++..+++.+
T Consensus       232 ~~~~~~---~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         232 EATGVP---KTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             ECCCCh---HHHHHHHHHHhcCCEEEEEe
Confidence            887632   24445555566666655443

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=89.24  E-value=2.8  Score=39.85  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhh--ccCCE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----e~i--~~ADv  181 (313)
                      +| .+|.|.|.|.+|...++.++..      |..+++..+.+++..+.+++.|...- +....+..    +..  +..|+
T Consensus       166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~  238 (351)
T cd08285         166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA  238 (351)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence            47 8999999999999999999988      88644555555555677777775210 00001221    122  24799


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++...   +.+.+....++++..++..+
T Consensus       239 vld~~g~~---~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         239 VIIAGGGQ---DTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             EEECCCCH---HHHHHHHHHhhcCCEEEEec
Confidence            88877643   24555566677776665443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02740 Alcohol dehydrogenase-like

Probab=89.18  E-value=2.7  Score=40.95  Aligned_cols=46  Identities=22%  Similarity=0.466  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .++.|+|.|.+|...++.++..      |. +|+ ..+.+++..+.+++.|.
T Consensus       198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi-~~~~~~~r~~~a~~~Ga  244 (381)
T PLN02740        198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKII-GVDINPEKFEKGKEMGI  244 (381)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEE-EEcCChHHHHHHHHcCC
Confidence            47 8999999999999999999998      98 454 44444555677777775

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=89.16  E-value=0.69  Score=43.80  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK  144 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vi  144 (313)
                      .+|+| ++|.|.|+|++|...|+.|.+.      |.+|+
T Consensus        34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv   65 (254)
T cd05313          34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV   65 (254)
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence            67899 9999999999999999999998      99876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.11  E-value=1.2  Score=44.94  Aligned_cols=86  Identities=20%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             cCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhh
Q 021356          108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET  175 (313)
Q Consensus       108 l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~e~  175 (313)
                      |+| |+|||.|+-          +-...++..|.+.      |.+|++++...   .+.+...  ++.    ...+.+++
T Consensus       308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~a---~~~~~~~~~~~~----~~~~~~~~  373 (414)
T COG1004         308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPVA---MENAFRNFPDVE----LESDAEEA  373 (414)
T ss_pred             CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECchh---hHHHHhcCCCce----EeCCHHHH
Confidence            999 999999973          2344566677777      99876554332   2222222  122    25689999


Q ss_pred             hccCCEEEEcccchhHHHHH-HHHHhcCCCCcEEEE
Q 021356          176 ISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGL  210 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~vi-~ei~~~mk~gaiLid  210 (313)
                      +++||+|++++..++..++= +.+  .||. .+|+|
T Consensus       374 ~~~aDaivi~tew~ef~~~d~~~~--~m~~-~~v~D  406 (414)
T COG1004         374 LKGADAIVINTEWDEFRDLDFEKL--LMKT-PVVID  406 (414)
T ss_pred             HhhCCEEEEeccHHHHhccChhhh--hccC-CEEEe
Confidence            99999999999988877643 334  5543 45554

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=89.10  E-value=1.7  Score=37.60  Aligned_cols=80  Identities=19%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA  192 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~  192 (313)
                      ++.|+|.|..|..++..|++.      |++++-..+.+.... ...-.|+..- +...++.+..++.|.+++++++....
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pvl-g~~~~l~~~~~~~~~~iiai~~~~~~   72 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPVL-GGDEDLLRYPPDEVDLVVAIGDNKLR   72 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccEE-CCHHHHhhhcccccEEEEEcCCHHHH
Confidence            367999999999999999988      998776665543211 1112344320 01112333345568899999755544


Q ss_pred             -HHHHHHHh
Q 021356          193 -DNYEKIFS  200 (313)
Q Consensus       193 -~vi~ei~~  200 (313)
                       ++++.+..
T Consensus        73 ~~i~~~l~~   81 (201)
T TIGR03570        73 RRLFEKLKA   81 (201)
T ss_pred             HHHHHHHHh
Confidence             35555443

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=89.09  E-value=0.62  Score=45.04  Aligned_cols=62  Identities=24%  Similarity=0.233  Sum_probs=39.9

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL  184 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiL  184 (313)
                      +|||||.|..|..+++.+++.      |+++++..... ......+. .-++.   ...+   +.++++.+|+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~ad-~~~~~---~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVAD-HVVLA---PFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhCc-eeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence            589999999999999999999      99876654432 22222221 11211   1223   5567788998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK10083 putative oxidoreductase; Provisional

Probab=89.05  E-value=4.3  Score=38.12  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHh-chhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc----cCCE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL  181 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~----~ADv  181 (313)
                      -+| .+|.|+|.|.+|...++.++. .      |.++++..+..++..+.+.+.|...- +....+..+.+.    +.|+
T Consensus       159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~  231 (339)
T PRK10083        159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL  231 (339)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence            357 899999999999999988885 6      87655666555556667777775210 000112334342    3467


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      |+-++...   ..+.+....++++-.+++.
T Consensus       232 vid~~g~~---~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        232 IIDAACHP---SILEEAVTLASPAARIVLM  258 (339)
T ss_pred             EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence            77777632   2344445566666655544

>PLN02827 Alcohol dehydrogenase-like

Probab=88.93  E-value=3.3  Score=40.43  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .++.|+|.|.+|...++.++..      |..+++..+.+++..+.+.+.|.
T Consensus       193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa  239 (378)
T PLN02827        193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGV  239 (378)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence            57 9999999999999999999998      98645555544455667777776

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=88.91  E-value=1.4  Score=39.70  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .+|+| |++.|.| .|.+|.++++.|.+.      |++|++..|.
T Consensus         6 ~~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~   43 (255)
T PRK07523          6 FDLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD   43 (255)
T ss_pred             cCCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence            35789 9999999 589999999999998      9998766654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=88.91  E-value=1.7  Score=41.79  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEe
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGL  147 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~  147 (313)
                      ++-|.. .+|.|||+|-+|..+|++|...      |+. +.+.+
T Consensus        14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D   50 (286)
T cd01491          14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD   50 (286)
T ss_pred             HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence            456777 9999999999999999999988      874 44443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07774 short chain dehydrogenase; Provisional

Probab=88.79  E-value=3.3  Score=36.98  Aligned_cols=37  Identities=27%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ..++| +++-|+|. |-+|.++++.|.+.      |++|++..|.
T Consensus         2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~   39 (250)
T PRK07774          2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADIN   39 (250)
T ss_pred             cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence            35788 99999996 99999999999998      9988776665

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=88.76  E-value=4.3  Score=39.14  Aligned_cols=86  Identities=21%  Similarity=0.270  Sum_probs=52.0

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhh-----cc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SG  178 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i-----~~  178 (313)
                      .+| .++.|+|.|.+|...++.++..      |. +|+ .....+...+.+++.|...- +...  .+..+.+     ..
T Consensus       183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi-~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g  254 (365)
T cd08277         183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRII-GVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGG  254 (365)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCC
Confidence            357 8999999999999999999998      98 454 44444455666777775210 0000  0112212     24


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCC
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKP  204 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~  204 (313)
                      .|+|+-++...   ..+.+....+++
T Consensus       255 ~d~vid~~g~~---~~~~~~~~~l~~  277 (365)
T cd08277         255 VDYSFECTGNA---DLMNEALESTKL  277 (365)
T ss_pred             CCEEEECCCCh---HHHHHHHHhccc
Confidence            78888777642   234445556654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK09242 tropinone reductase; Provisional

Probab=88.62  E-value=3.8  Score=36.92  Aligned_cols=37  Identities=19%  Similarity=0.164  Sum_probs=31.2

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .++| |++-|+|. |.||.++++.|.+.      |++|++..|..
T Consensus         6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~   43 (257)
T PRK09242          6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA   43 (257)
T ss_pred             ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence            4678 99999994 79999999999998      99987776653

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.50  E-value=1.8  Score=43.21  Aligned_cols=67  Identities=28%  Similarity=0.293  Sum_probs=42.9

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLLL  185 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa  185 (313)
                      +|.|||.|..|.+.|+.|.+.      |++|.+.++.......    .-.+.|+...-+...+   ..+.+.+.|+|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s   75 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS   75 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence            689999999999999999999      9987766544322121    1234565431111111   11357789999883

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=88.50  E-value=0.66  Score=42.87  Aligned_cols=66  Identities=17%  Similarity=0.088  Sum_probs=42.6

Q ss_pred             EEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhh------cc-CCE
Q 021356          113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETI------SG-SDL  181 (313)
Q Consensus       113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~i------~~-ADv  181 (313)
                      +|.|+|. |.+|..+++.|.+.      |++|.+..|+.++..    ..++.......   .++.+++      .. +|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~   70 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA   70 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence            4778995 99999999999998      999888877643211    11211000112   2344455      45 899


Q ss_pred             EEEcccc
Q 021356          182 VLLLISD  188 (313)
Q Consensus       182 IiLavP~  188 (313)
                      |+++.|+
T Consensus        71 v~~~~~~   77 (285)
T TIGR03649        71 VYLVAPP   77 (285)
T ss_pred             EEEeCCC
Confidence            9988775

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.49  E-value=2.9  Score=39.54  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhhccCCEEEEc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLL  185 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~-~~e~i~~ADvIiLa  185 (313)
                      -+| .++.|.|.|.+|.++++.++..      |.++++..+. .+..+.+.+.|...- +....+ ..+.-...|+|+-+
T Consensus       168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~  239 (337)
T cd05283         168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDT  239 (337)
T ss_pred             CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence            357 8999999999999999999998      9876555444 344556666664210 000001 11223567999988


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++...   .+++....++++..+++.+
T Consensus       240 ~g~~~---~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         240 VSASH---DLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             CCCcc---hHHHHHHHhcCCCEEEEEe
Confidence            87642   2445556666666665543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK06138 short chain dehydrogenase; Provisional

Probab=88.41  E-value=1.8  Score=38.67  Aligned_cols=37  Identities=24%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +|+| +++.|+|. |-+|..+++.|.+.      |++|++..|+.
T Consensus         2 ~~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~   39 (252)
T PRK06138          2 RLAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA   39 (252)
T ss_pred             CCCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence            3678 99999994 89999999999988      99877666653

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=88.37  E-value=3.4  Score=39.46  Aligned_cols=46  Identities=20%  Similarity=0.199  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .++.|+|.|.+|...++.++..      |.+|++. ..+++..+.+++.|.
T Consensus       166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~-~~~~~~~~~~~~~Ga  211 (349)
T TIGR03201       166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAI-DIDPEKLEMMKGFGA  211 (349)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE-cCCHHHHHHHHHhCC
Confidence            57 8999999999999999999998      9876544 444455667777775

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK12828 short chain dehydrogenase; Provisional

Probab=88.35  E-value=4.7  Score=35.33  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .++| +++-|+| .|.+|.++++.|.+.      |.+|++..|+.
T Consensus         4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~   41 (239)
T PRK12828          4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA   41 (239)
T ss_pred             CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence            3678 9999999 589999999999988      99877666643

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=88.33  E-value=1  Score=47.33  Aligned_cols=73  Identities=25%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDL  181 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADv  181 (313)
                      ...+.. |+|||||-|..|.-+++.+++.      |+++++.... +.............  ....+   +.++++++|+
T Consensus        17 ~~~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~-~~apa~~~AD~~~v--~~~~D~~~l~~~a~~~dv   86 (577)
T PLN02948         17 VHGVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPL-EDCPASSVAARHVV--GSFDDRAAVREFAKRCDV   86 (577)
T ss_pred             ccCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-CCCchhhhCceeee--CCCCCHHHHHHHHHHCCE
Confidence            345677 9999999999999999999999      9987665443 22111111111111  11223   3455678999


Q ss_pred             EEEccc
Q 021356          182 VLLLIS  187 (313)
Q Consensus       182 IiLavP  187 (313)
                      |.....
T Consensus        87 It~e~e   92 (577)
T PLN02948         87 LTVEIE   92 (577)
T ss_pred             EEEecC
Confidence            876544

>PRK13984 putative oxidoreductase; Provisional

Probab=88.32  E-value=1.8  Score=45.15  Aligned_cols=73  Identities=21%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG  167 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~  167 (313)
                      -.+ ++|.|||.|..|.+.|..|++.      |++|.+..+...                    ...+...+.|+...-+
T Consensus       281 ~~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~  353 (604)
T PRK13984        281 KKN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN  353 (604)
T ss_pred             cCC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence            357 9999999999999999999999      998777654321                    1123445566532111


Q ss_pred             Cc----CCHHhhhccCCEEEEccc
Q 021356          168 TL----GDIYETISGSDLVLLLIS  187 (313)
Q Consensus       168 ~~----~~~~e~i~~ADvIiLavP  187 (313)
                      +.    .+.+++..+.|.|||++-
T Consensus       354 ~~v~~~~~~~~~~~~yD~vilAtG  377 (604)
T PRK13984        354 TRVGKDIPLEELREKHDAVFLSTG  377 (604)
T ss_pred             CEeCCcCCHHHHHhcCCEEEEEcC
Confidence            11    133455567999999986

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=88.31  E-value=2  Score=42.27  Aligned_cols=71  Identities=14%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             ccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhccC
Q 021356          107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       107 ~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~A  179 (313)
                      .++| .||++||-   +++..|++..+...+     |+++.+...++    ....+.+++.|...+  .+.+++|++++|
T Consensus       156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a  227 (338)
T PRK08192        156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA  227 (338)
T ss_pred             CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence            5899 99999997   588999888765331     78876665442    122344455553211  146889999999


Q ss_pred             CEEEEc
Q 021356          180 DLVLLL  185 (313)
Q Consensus       180 DvIiLa  185 (313)
                      |+|...
T Consensus       228 Dvvyt~  233 (338)
T PRK08192        228 DILYLT  233 (338)
T ss_pred             CEEEEc
Confidence            999984

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=88.22  E-value=2  Score=45.58  Aligned_cols=73  Identities=25%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc--------------------cHHHHHHCCceecCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEENG  167 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~--------------------s~~~A~~~G~~~~~~  167 (313)
                      -.| ++|+|||.|..|.+.|..|+..      |++|++..+....                    ..+...+.|+...-+
T Consensus       191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~  263 (652)
T PRK12814        191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN  263 (652)
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            467 9999999999999999999998      9988777654211                    123445566542111


Q ss_pred             Cc----CCHHhhhccCCEEEEccc
Q 021356          168 TL----GDIYETISGSDLVLLLIS  187 (313)
Q Consensus       168 ~~----~~~~e~i~~ADvIiLavP  187 (313)
                      +.    .+.++...+.|.|+|++-
T Consensus       264 ~~v~~dv~~~~~~~~~DaVilAtG  287 (652)
T PRK12814        264 TVFGRDITLEELQKEFDAVLLAVG  287 (652)
T ss_pred             CcccCccCHHHHHhhcCEEEEEcC
Confidence            11    134444556999999874

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=88.21  E-value=1.9  Score=40.21  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH--HHHHH-CC------ceecCCC-cCCHHhhhc
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS  177 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~~~~-~~~~~e~i~  177 (313)
                      .| ++|.|.| .|-+|..+++.|.+.      |++|++..+......  ..... .+      ++..|-. ....+++++
T Consensus         3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   75 (322)
T PLN02662          3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD   75 (322)
T ss_pred             CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence            36 8999999 699999999999999      998876665533211  11110 11      1210100 124567788


Q ss_pred             cCCEEEEccc
Q 021356          178 GSDLVLLLIS  187 (313)
Q Consensus       178 ~ADvIiLavP  187 (313)
                      ++|+||-+..
T Consensus        76 ~~d~Vih~A~   85 (322)
T PLN02662         76 GCEGVFHTAS   85 (322)
T ss_pred             CCCEEEEeCC
Confidence            9998887653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=88.16  E-value=2  Score=43.48  Aligned_cols=74  Identities=23%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc--------------------cHHHHHHCCceec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEE  165 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~--------------------s~~~A~~~G~~~~  165 (313)
                      ..-.| ++|.|||.|..|-+.|..|++.      |++|++..+....                    ..+...+.|+...
T Consensus       139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~  211 (471)
T PRK12810        139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR  211 (471)
T ss_pred             cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence            34467 9999999999999999999998      9988777653210                    1234555665421


Q ss_pred             CCCc----CCHHhhhccCCEEEEcc
Q 021356          166 NGTL----GDIYETISGSDLVLLLI  186 (313)
Q Consensus       166 ~~~~----~~~~e~i~~ADvIiLav  186 (313)
                      -++.    .+.++.....|.|++++
T Consensus       212 ~~~~v~~~~~~~~~~~~~d~vvlAt  236 (471)
T PRK12810        212 TNVEVGKDITAEELLAEYDAVFLGT  236 (471)
T ss_pred             eCCEECCcCCHHHHHhhCCEEEEec
Confidence            1111    13345556899999987

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.15  E-value=1.8  Score=38.49  Aligned_cols=36  Identities=17%  Similarity=0.100  Sum_probs=30.7

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +|+| +++.|+|. |-+|.++++.|.+.      |.+|++..+.
T Consensus         2 ~~~~-~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~   38 (253)
T PRK08217          2 DLKD-KVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLN   38 (253)
T ss_pred             CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence            3678 99999997 99999999999998      9887666554

>PRK06500 short chain dehydrogenase; Provisional

Probab=88.14  E-value=2.4  Score=37.70  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .++| +++.|.|. |.+|.++++.|.+.      |++|++..++
T Consensus         3 ~~~~-k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~   39 (249)
T PRK06500          3 RLQG-KTALITGGTSGIGLETARQFLAE------GARVAITGRD   39 (249)
T ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCC
Confidence            4678 99999995 89999999999998      9987666554

>PLN02214 cinnamoyl-CoA reductase

Probab=88.13  E-value=1.9  Score=41.40  Aligned_cols=76  Identities=17%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH---HHHC---C--ceecCC-CcCCHHhh
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAA---G--FTEENG-TLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~---A~~~---G--~~~~~~-~~~~~~e~  175 (313)
                      ..+++ ++|.|.|. |.+|..+++.|.+.      |++|+...|........   ....   .  +...|- ...+++++
T Consensus         6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   78 (342)
T PLN02214          6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA   78 (342)
T ss_pred             ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence            45678 99999996 99999999999998      99887666643221111   0111   1  121010 01235567


Q ss_pred             hccCCEEEEcccc
Q 021356          176 ISGSDLVLLLISD  188 (313)
Q Consensus       176 i~~ADvIiLavP~  188 (313)
                      ++++|+||-+..+
T Consensus        79 ~~~~d~Vih~A~~   91 (342)
T PLN02214         79 IDGCDGVFHTASP   91 (342)
T ss_pred             HhcCCEEEEecCC
Confidence            8899998887643

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=88.13  E-value=4.9  Score=36.33  Aligned_cols=43  Identities=16%  Similarity=0.102  Sum_probs=34.8

Q ss_pred             cccccccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          100 LFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       100 ~f~~~~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .|..+.-.|+| +++-|.|. |-+|.++++.|.+.      |++|++..+.
T Consensus         5 ~~~~~~~~l~~-k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~   48 (258)
T PRK06935          5 KFSMDFFSLDG-KVAIVTGGNTGLGQGYAVALAKA------GADIIITTHG   48 (258)
T ss_pred             hhccccccCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence            34544457899 99999995 69999999999988      9988777665

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=88.12  E-value=4  Score=39.49  Aligned_cols=46  Identities=22%  Similarity=0.352  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      .| .++.|+|.|.+|...++.++..      |. +|+ ..+.+++..+.+++.|.
T Consensus       185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi-~~~~~~~~~~~a~~~Ga  231 (368)
T TIGR02818       185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRII-AIDINPAKFELAKKLGA  231 (368)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCC
Confidence            47 8999999999999999999998      98 554 44444455667777775

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=88.05  E-value=0.74  Score=45.00  Aligned_cols=34  Identities=32%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |++|.|||.|.+|.+.|..|.+.      |.+|++.++..
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence            46899999999999999999998      99988887653

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.04  E-value=4.6  Score=35.48  Aligned_cols=38  Identities=26%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      .++. ++|.|+| .|.+|.++++.|.+.      |+++++..+.+.
T Consensus         3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~   41 (249)
T PRK12825          3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE   41 (249)
T ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence            4566 8999998 699999999999998      998776666544

>PRK06197 short chain dehydrogenase; Provisional

Probab=87.96  E-value=4.6  Score=37.75  Aligned_cols=46  Identities=17%  Similarity=0.014  Sum_probs=36.2

Q ss_pred             cCCCcccccccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356           96 GGRDLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus        96 ~G~w~f~~~~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      -+.|... .+.+++| +++-|.| .|-||.++++.|.+.      |++|++..|.
T Consensus         3 ~~~~~~~-~~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~   49 (306)
T PRK06197          3 MTKWTAA-DIPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRN   49 (306)
T ss_pred             CCCCCcc-ccccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCC
Confidence            3455433 3467899 9999999 589999999999998      9988777665

>PRK07060 short chain dehydrogenase; Provisional

Probab=87.74  E-value=2.5  Score=37.57  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .++| +++.|.|. |.+|..+++.+.+.      |++|++..|..
T Consensus         6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~   43 (245)
T PRK07060          6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA   43 (245)
T ss_pred             ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence            4788 99999997 79999999999998      99877766654

>PRK12937 short chain dehydrogenase; Provisional

Probab=87.66  E-value=4.4  Score=35.93  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .+++ +++-|+| .|-+|.++++.|.+.      |+++++..+++
T Consensus         2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS   39 (245)
T ss_pred             CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence            4678 9999999 589999999999998      99876665544

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=87.63  E-value=7.2  Score=36.63  Aligned_cols=94  Identities=20%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hh--ccCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TI--SGSD  180 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i--~~AD  180 (313)
                      .+| .+|.|.|.|.+|.++++.++..      |. +++.. ...++....+.+.|...-+....+..+    ..  ...|
T Consensus       166 ~~~-~~vlI~g~g~vg~~~~~~a~~~------g~~~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~d  237 (344)
T cd08284         166 RPG-DTVAVIGCGPVGLCAVLSAQVL------GAARVFAV-DPVPERLERAAALGAEPINFEDAEPVERVREATEGRGAD  237 (344)
T ss_pred             ccC-CEEEEECCcHHHHHHHHHHHHc------CCceEEEE-cCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCC
Confidence            467 9999999999999999999999      97 55444 444444556666774210000112222    22  3478


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++...   ..+.+....++++..++..+
T Consensus       238 vvid~~~~~---~~~~~~~~~l~~~g~~v~~g  266 (344)
T cd08284         238 VVLEAVGGA---AALDLAFDLVRPGGVISSVG  266 (344)
T ss_pred             EEEECCCCH---HHHHHHHHhcccCCEEEEEC
Confidence            888776642   23445555566666665543

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK07478 short chain dehydrogenase; Provisional

Probab=87.61  E-value=2.1  Score=38.62  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=31.1

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .++| +++-|.|. |-+|.++++.|.+.      |.+|++..+..
T Consensus         3 ~~~~-k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~   40 (254)
T PRK07478          3 RLNG-KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQ   40 (254)
T ss_pred             CCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence            5678 99999995 78999999999998      99887776653

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.59  E-value=1.2  Score=39.72  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=31.4

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ++++ +++.|+| .|.+|.++++.|.+.      |++|++..|+.
T Consensus         2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE   39 (251)
T ss_pred             CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence            4678 9999999 589999999999998      99977776654

>PRK06114 short chain dehydrogenase; Provisional

Probab=87.56  E-value=5.9  Score=35.78  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      .++| +++-|.| .|-||.++|+.|.+.      |++|++..++.+
T Consensus         5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRTD   43 (254)
T ss_pred             CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCcc
Confidence            5788 9999999 668999999999998      999887776543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.52  E-value=5.3  Score=38.90  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcC-CHHhhh----c--cCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLG-DIYETI----S--GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~-~~~e~i----~--~AD  180 (313)
                      +| .+|.|+|.|.+|...++.++..      |...+++.+.++...+.+++. +...-+.... +..+.+    .  ..|
T Consensus       184 ~g-~~VlV~g~G~vG~~~~~la~~~------g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D  256 (386)
T cd08283         184 PG-DTVAVWGCGPVGLFAARSAKLL------GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPD  256 (386)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence            57 8999999999999999999998      874345554445555666665 3211000011 122222    1  479


Q ss_pred             EEEEcccch------------------hHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDA------------------AQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~------------------a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+=++...                  .-...+++....++++..+++.+
T Consensus       257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            998887421                  12346677778888887776554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=87.51  E-value=0.89  Score=43.87  Aligned_cols=97  Identities=13%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..+.|+|.|.++........+.    .+.+ +|.++++..+...+.|....     +.-+-....+.+++++.+|+|+-+
T Consensus       139 ~vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~a  214 (333)
T KOG3007|consen  139 CVLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGA  214 (333)
T ss_pred             eEEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEec
Confidence            3567999999999988776554    1112 68899998877777776321     111111245788999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      ++-..- -+   ....+|||+-|-.+++++.
T Consensus       215 tlsteP-il---fgewlkpgthIdlVGsf~p  241 (333)
T KOG3007|consen  215 TLSTEP-IL---FGEWLKPGTHIDLVGSFKP  241 (333)
T ss_pred             cccCCc-ee---eeeeecCCceEeeeccCCc
Confidence            885421 11   1246789988888999864

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=87.44  E-value=1  Score=47.37  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      .-.+| ++|.|.|. |.+|..+++.|.+.      |++|++..|...
T Consensus        76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~e  115 (576)
T PLN03209         76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQ  115 (576)
T ss_pred             ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHH
Confidence            34467 99999995 99999999999998      999877776543

>PRK05876 short chain dehydrogenase; Provisional

Probab=87.36  E-value=2  Score=39.92  Aligned_cols=38  Identities=21%  Similarity=0.230  Sum_probs=32.3

Q ss_pred             ccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       105 ~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++|+| +++-|.| .|-+|.++|+.|.+.      |.+|++..++
T Consensus         1 ~~~~~~-k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~   39 (275)
T PRK05876          1 MDGFPG-RGAVITGGASGIGLATGTEFARR------GARVVLGDVD   39 (275)
T ss_pred             CCCcCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence            356889 9999998 779999999999998      9998776655

>PLN02702 L-idonate 5-dehydrogenase

Probab=87.29  E-value=4.7  Score=38.64  Aligned_cols=94  Identities=14%  Similarity=0.128  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC---CCcCCHHhhh--------c
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLGDIYETI--------S  177 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~~~~~~~e~i--------~  177 (313)
                      +| .+|.|+|.|.+|....+.++..      |.++++..+......+.+.+.|.....   ....+..+.+        .
T Consensus       181 ~g-~~vlI~g~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (364)
T PLN02702        181 PE-TNVLVMGAGPIGLVTMLAARAF------GAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGG  253 (364)
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCC
Confidence            57 8999999999999999999998      986555555555555666677753200   0001222211        2


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..|+|+-++....   .+.+....++++..+++.+
T Consensus       254 ~~d~vid~~g~~~---~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        254 GIDVSFDCVGFNK---TMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEEc
Confidence            4799998887432   3555566677776666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3fr7_A	525	Ketol-Acid Reductoisomerase (Kari) In Complex With		1e-114
1yve_I	524	Acetohydroxy Acid Isomeroreductase Complexed With N		1e-113
1np3_A	338	Crystal Structure Of Class I Acetohydroxy Acid Isom		6e-18
3ulk_A	491	E. Coli Ketol-Acid Reductoisomerase In Complex With		2e-07
1yrl_A	491	Escherichia Coli Ketol-Acid Reductoisomerase Length		2e-07

>pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525

Iteration: 1
 Score =  408 bits (1048), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/235 (84%), Positives = 212/235 (90%)
Query: 72  LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
           LDF+TSVF K+ +SLA  +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15  LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
           DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75  DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
           ADNYEKIFS MKPNSI            QS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGER 249

>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524

Iteration: 1
 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/249 (77%), Positives = 216/249 (86%), Gaps = 2/249 (0%)
Query: 60  MASETALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVI 117
           M S  ++ TP     DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVI
Sbjct: 1   MVSAPSIDTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVI 60
Query: 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177
           GWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETIS
Sbjct: 61  GWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETIS 120
Query: 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCP 237
           GSDLVLLLISD+AQADNYEK+FS MKPNSI            QS+G DFPKNI VIAVCP
Sbjct: 121 GSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCP 180
Query: 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297
           KGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQE
Sbjct: 181 KGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQE 240
Query: 298 YKSDIFGER 306
           YKSDIFGER
Sbjct: 241 YKSDIFGER 249

>pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++ +IG+GSQG A A NL+DS       + V VGLR GS + A+A A G       + D+
Sbjct: 18  KVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADV 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NI 230
              ++ +D+V++L  D  Q   Y E+I   +K  +             Q +    P+ ++
Sbjct: 67  KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV----PRADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT- 289
            VI + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G   T 
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKG-----GGIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 290 -FATTLEQEYKSDIFGER 306
              TT + E ++D+FGE+
Sbjct: 178 IIETTFKDETETDLFGEQ 195

>pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 23/216 (10%)
Query: 97  GRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156
           GRD F        G  ++ ++G G+QG  Q  N+RDS       + +   LRK   + AE
Sbjct: 24  GRDEFADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISYALRK--EAIAE 74
Query: 157 ARAA--GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXX 214
            RA+    TE    +G   E I  +DLV+ L  D   +D    +   MK  +        
Sbjct: 75  KRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF 134
Query: 215 XXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT 274
                  +G    K+I V+ V PK  G  VR  Y +     G G+ +  AVH + D +  
Sbjct: 135 NIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGE 186
Query: 275 NVALGWSVALGSPFTFATTLEQ----EYKSDIFGER 306
            +A+  + A  +    A  LE     E KSD+ GE+
Sbjct: 187 GMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQ 222

>pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 23/216 (10%)
Query: 97  GRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156
           GRD F        G  ++ ++G G+QG  Q  N+RDS       + +   LRK   + AE
Sbjct: 24  GRDEFADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISYALRK--EAIAE 74
Query: 157 ARAA--GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXX 214
            RA+    TE    +G   E I  +DLV+ L  D   +D    +   MK  +        
Sbjct: 75  KRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF 134
Query: 215 XXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT 274
                  +G    K+I V+ V PK  G  VR  Y +     G G+ +  AVH + D +  
Sbjct: 135 NIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGE 186
Query: 275 NVALGWSVALGSPFTFATTLEQ----EYKSDIFGER 306
            +A+  + A  +    A  LE     E KSD+ GE+
Sbjct: 187 GMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQ 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	1e-117
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	4e-43
1yrl_A	491	Ketol-acid reductoisomerase; branched-chain amino	1e-39
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	1e-04

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525

 Score =  346 bits (890), Expect = e-117
 Identities = 211/235 (89%), Positives = 224/235 (95%)

Query: 72  LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
           LDF+TSVF K+ +SLA  +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15  LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74

Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
           DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75  DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134

Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
           ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194

Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
           KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGER 249

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338

 Score =  150 bits (380), Expect = 4e-43
 Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 22/195 (11%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
           + +IG+GSQG A A NL+DS  +      V VGLR GS + A+A A G       + D+ 
Sbjct: 19  VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67

Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
             ++ +D+V++L  D  Q   Y++ I   +K  + L  +HGF + H   +      ++ V
Sbjct: 68  TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQV--VPRADLDV 124

Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTF 290
           I + PK  G +VR  +V+G      GI    A++QD  G A NVAL ++  +G       
Sbjct: 125 IMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTGII 179

Query: 291 ATTLEQEYKSDIFGE 305
            TT + E ++D+FGE
Sbjct: 180 ETTFKDETETDLFGE 194

>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491

 Score =  144 bits (364), Expect = 1e-39
 Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 32/203 (15%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
           + ++G G+QG  Q  N+RDS  +      +   LRK +      S+ +A   GF      
Sbjct: 40  VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88

Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228
           +G   E I  +DLV+ L  D   +D    +   MK  + LG SHGF +           K
Sbjct: 89  VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNI-VEVGE--QIRK 145

Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
           +I V+ V PK  G  VR  Y +G      G+ +  AVH   D  G    +A  W+ A G 
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200

Query: 287 PFTFA----TTLEQEYKSDIFGE 305
               A    ++   E KSD+ GE
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGE 221

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 55.1 bits (132), Expect = 6e-09
 Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)

Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           + ++G  G  G    + + DS             +          +  G       L D 
Sbjct: 14  VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61

Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSIGLDFPKNI 230
              I  +D+V+L + D       E I   ++P +I+ +        G +         +I
Sbjct: 62  DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116

Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
                 P              +     GI     V   + G   + A+G  + 
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 30/269 (11%), Positives = 76/269 (28%), Gaps = 100/269 (37%)

Query: 41  KSLRALKTTRG------RGSALGAQ-MASETALKTPFLLDFETSVFKKDAISLANRDEFI 93
           ++L  L+  +        GS  G   +A +  L        +  +F    ++L N +   
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNS-- 194

Query: 94  VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS-------------- 139
                 + ++L      I+        +     + N++  +   ++              
Sbjct: 195 ---PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 140 -----DI----VVK--------------------VGLRKGSRSFAEARAAGFTEE----- 165
                ++                           +     +    +  +   T +     
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 166 -----NGTLGDI-YETISGSDLVLLLIS-----DAAQADNYEKIFSCMKPNSILGLSHGF 214
                +    D+  E ++ +   L +I+       A  DN++ + +C K  +I+  S   
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESS--- 362

Query: 215 LLGHLQ-----------SIGLDFPKNIGV 232
            L  L+           S+   FP +  +
Sbjct: 363 -LNVLEPAEYRKMFDRLSV---FPPSAHI 387

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)

Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
           + V G G+     +                    AE  +  +    L          +  
Sbjct: 5   VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64

Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
             +       D    ISG+D+V+L +   A    ++ +   ++ ++++           Q
Sbjct: 65  VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124

Query: 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
              +        +++      P   R+   G+++   G  S  A 
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	100.0
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	100.0
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.95
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.83
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.81
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.8
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.78
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.74
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.72
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.7
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.68
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.67
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.67
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.66
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.66
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.65
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.65
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.64
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.64
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.64
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.62
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.61
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.61
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.61
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.59
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.59
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.59
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.59
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.59
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.58
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.58
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.58
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.57
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.57
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.56
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.56
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.55
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.55
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.55
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.55
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.54
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.54
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.54
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.53
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.53
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.53
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.52
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.52
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.52
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.5
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.5
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.48
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.48
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.48
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.47
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.47
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.46
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.46
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.46
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.46
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.46
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.44
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.44
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.42
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.42
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.41
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.41
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.38
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.37
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.37
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.36
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.33
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.32
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.31
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.31
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.31
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.31
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.28
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.27
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.27
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.27
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.25
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.25
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.24
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.24
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.23
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.22
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.22
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.21
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.21
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.2
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.2
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.19
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.18
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.18
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.17
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.17
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.17
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.12
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.09
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.07
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.06
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.06
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.05
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.01
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.01
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.98
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.94
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.93
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.93
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.92
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.89
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.88
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.86
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.84
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.81
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.81
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.78
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.75
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.75
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.75
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.74
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.73
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.7
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.7
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.67
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.65
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.63
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.63
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.63
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.62
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.59
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.56
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.55
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.52
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.49
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.48
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.47
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.37
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.34
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.27
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.25
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.24
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.24
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.23
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.21
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.21
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.18
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.17
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.17
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.16
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.14
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.12
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.11
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.11
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.11
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.1
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.09
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.09
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.08
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.07
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.07
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.03
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.03
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.02
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.02
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.02
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.01
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.01
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.96
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.95
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.94
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.93
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.92
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.92
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.91
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.91
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.9
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.9
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.89
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.88
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.85
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.85
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.82
4had_A	350	Probable oxidoreductase protein; structural genomi	97.8
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.8
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.79
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.78
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.78
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.78
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.77
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.77
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.74
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.73
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.7
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.67
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.66
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.66
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.64
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.64
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.63
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.62
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.61
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.61
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.6
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.59
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.59
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.58
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.58
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.56
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.56
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.55
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.53
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.53
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.53
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.52
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.51
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.51
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.5
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.49
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.46
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.46
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.45
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.43
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.42
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.42
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.41
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.41
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.41
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.39
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.38
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.38
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.37
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.34
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.31
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.31
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.3
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.3
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.3
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.29
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.27
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.25
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.23
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.21
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	97.2
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.19
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.19
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.16
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.13
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.13
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.12
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.12
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.1
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.08
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.07
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.06
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.06
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.05
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.05
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.04
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.03
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.01
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.98
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.96
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.95
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.92
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.91
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.91
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.88
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.84
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.84
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.82
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.8
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.8
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.68
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.65
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.65
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.65
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.64
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.64
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.63
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.62
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.61
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.57
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.54
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.53
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.53
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.51
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.5
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	96.5
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.48
1lnq_A	336	MTHK channels, potassium channel related protein;	96.44
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.43
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.4
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.35
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.25
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.23
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.23
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.21
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.13
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.12
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.05
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.0
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.98
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.92
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.91
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.91
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.86
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.82
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	95.8
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	95.8
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.79
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	95.75
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.71
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.7
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.7
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.67
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.63
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.61
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.59
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.59
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.53
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.51
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	95.41
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.39
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.39
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.35
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.35
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.34
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.32
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.29
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.28
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	95.25
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.22
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.16
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.14
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.1
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.09
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.06
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.05
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.04
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.01
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.01
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.0
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	94.99
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	94.98
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.89
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	94.87
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	94.86
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.71
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.7
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	94.68
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.65
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.63
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.6
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.58
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	94.57
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.56
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.54
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.53
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.51
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	94.51
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.51
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.5
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.49
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.49
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.47
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	94.47
2csu_A	457	457AA long hypothetical protein; structural genomi	94.43
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.41
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.39
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	94.36
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.33
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.29
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.27
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.21
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.11
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.09
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	94.03
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	94.02
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	94.01
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	93.98
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.97
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.97
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.9
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	93.9
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	93.8
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	93.74
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.73
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.7
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.66
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	93.63
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.63
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.62
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	93.58
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	93.58
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.55
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	93.54
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	93.5
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.48
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.45
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	93.43
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	93.42
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.37
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.35
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.34
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	93.3
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.25
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	93.25
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	93.21
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.2
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.18
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	93.14
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.13
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.13
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	93.08
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.04
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.0
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.96
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	92.95
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.88
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.88
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	92.85
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.82
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.82
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.77
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.74
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	92.73
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.73
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	92.71
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.71
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.71
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.7
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	92.6
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.59
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.56
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.52
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.43
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.43
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.41
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.38
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	92.37
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.34
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	92.3
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	92.28
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	92.21
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.13
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.09
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	92.01
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.99
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	91.99
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	91.94
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	91.93
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	91.93
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	91.9
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	91.9
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.89
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	91.89
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	91.81
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.75
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	91.73
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	91.68
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	91.65
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	91.62
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	91.54
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	91.51
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	91.49
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	91.46
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	91.45
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	91.45
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	91.42
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.29
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	91.25
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.16
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	91.1
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	91.07
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	91.06
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.04
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.95
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	90.83
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	90.77
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	90.66
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	90.6
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	90.5
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	90.49
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	90.49
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	90.46
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	90.46
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	90.39

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=100.00  E-value=5.5e-50  Score=400.20  Aligned_cols=244  Identities=87%  Similarity=1.293  Sum_probs=226.1

Q ss_pred             ccccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356           69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus        69 ~~~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .+.++|++++|.+|+|+|++..|++|++|+|+|++++..|+|||+|||||+|+||.++|++|+++++++++|++|+++++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r   91 (525)
T 3fr7_A           12 MPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLR   91 (525)
T ss_dssp             ---CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             ccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeC
Confidence            56799999999999999999999999999999998889999999999999999999999999999888999999999999


Q ss_pred             CCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC
Q 021356          149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK  228 (313)
Q Consensus       149 ~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~  228 (313)
                      +++++.+.|.+.|+...+.+..++.|++++||+|||++||+.+.+++++++++||+|++|++++|+++.++++.+..+|+
T Consensus        92 ~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~  171 (525)
T 3fr7_A           92 KGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPK  171 (525)
T ss_dssp             TTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCT
T ss_pred             CchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCC
Confidence            88888899999999742223358899999999999999999999999999999999999999999999887654567788


Q ss_pred             CccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHHhhcccchhhh
Q 021356          229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGEREG  308 (313)
Q Consensus       229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~~d~~ge~~~  308 (313)
                      +++||++|||+|++.+|+.|.+|++.||+|++++|++++|+++++++.+++|+.++|..++++||+++|+++||||||++
T Consensus       172 dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtv  251 (525)
T 3fr7_A          172 NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGI  251 (525)
T ss_dssp             TSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 021356          309 SLKM  312 (313)
Q Consensus       309 l~g~  312 (313)
                      |||.
T Consensus       252 LsG~  255 (525)
T 3fr7_A          252 LLGA  255 (525)
T ss_dssp             TTHH
T ss_pred             hcCc
Confidence            9984

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=100.00  E-value=1.2e-43  Score=349.94  Aligned_cols=218  Identities=33%  Similarity=0.510  Sum_probs=194.5

Q ss_pred             ccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356           71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus        71 ~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .+|||+++||.+..+|. ..+++   .|..|...+..|+| |+|+|||+|++|.++|+|||++      |++|+++.|++
T Consensus         2 ~ny~n~l~~~~~~~~~~-~c~~m---~~~eF~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~Vglr~~   70 (491)
T 3ulk_A            2 ANYFNTLNLRQQLAQLG-KCRFM---GRDEFADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISYALRKE   70 (491)
T ss_dssp             CCTGGGSCHHHHHHHHT-CCEEC---CGGGGTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEEEECHH
T ss_pred             cchhccccHHHHHHHhc-cceec---cHHHhcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEEEeCCC
Confidence            48999999997655332 22231   13355667799999 9999999999999999999999      99999999954


Q ss_pred             c-----ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccC
Q 021356          151 S-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD  225 (313)
Q Consensus       151 ~-----~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~  225 (313)
                      +     ++++.|.+.|+.     +.+.+|++++||+|++++||..+.+++++|.++||+|++|..+|||.+.+.   +..
T Consensus        71 s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~---~i~  142 (491)
T 3ulk_A           71 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEV---GEQ  142 (491)
T ss_dssp             HHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTT---CCC
T ss_pred             CcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCccccccc---ccc
Confidence            3     788999999998     458999999999999999999999999999999999999999999988554   347


Q ss_pred             CCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec--cCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhc
Q 021356          226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSD  301 (313)
Q Consensus       226 l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~--~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d  301 (313)
                      +|++++||.++|++||+.+|++|++|     .|.|++|+++  +|.++++.+++++|+.++|+.|  +++|||++||++|
T Consensus       143 pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetD  217 (491)
T 3ulk_A          143 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD  217 (491)
T ss_dssp             CCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHH
T ss_pred             cCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHH
Confidence            88999999999999999999999997     7999999997  8999999999999999999975  7999999999999


Q ss_pred             ccchhhhcccC
Q 021356          302 IFGEREGSLKM  312 (313)
Q Consensus       302 ~~ge~~~l~g~  312 (313)
                      |||||+||||+
T Consensus       218 LfGEQaVLcGg  228 (491)
T 3ulk_A          218 LMGEQTILCGM  228 (491)
T ss_dssp             HHHHHTTTTHH
T ss_pred             HHhhHHHHHHH
Confidence            99999999984

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.95  E-value=1.2e-27  Score=228.33  Aligned_cols=188  Identities=35%  Similarity=0.579  Sum_probs=165.5

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ...|++ ++|+|||+|+||.++|++|++.      |++|+++.++.+...+.+.+.|+..    . ++++++++||+|++
T Consensus        11 ~~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVil   78 (338)
T 1np3_A           11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMI   78 (338)
T ss_dssp             HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEE
T ss_pred             cchhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEE
Confidence            367889 9999999999999999999999      9988877776656577888888763    2 78899999999999


Q ss_pred             cccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       185 avP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ++|++.+.++++ ++.+++++|++|++++|+++ ....  ...+.+++|++.||++|++..+++|+.|     .|.++++
T Consensus        79 avp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii  150 (338)
T 1np3_A           79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI  150 (338)
T ss_dssp             CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred             eCCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEE
Confidence            999999999998 99999999999999999887 4443  2235678899999999999999999866     7899999


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhcccC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLKM  312 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g~  312 (313)
                      +|+++.++++++.+++|++.+|..+  ++.+|+++|.+.|+|+++++|||.
T Consensus       151 ~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~  201 (338)
T 1np3_A          151 AIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGG  201 (338)
T ss_dssp             EEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHH
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhh
Confidence            9999999999999999999999766  999999999999999999999873

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.83  E-value=3.8e-20  Score=175.15  Aligned_cols=187  Identities=14%  Similarity=0.088  Sum_probs=132.2

Q ss_pred             hhhcCCCccc-cc-ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCC
Q 021356           93 IVRGGRDLFK-LL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT  168 (313)
Q Consensus        93 ~v~~G~w~f~-~~-~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~  168 (313)
                      .|.+|.|.-. ++ ...+.. ++|+|||+|+||+++|+.|++.      |+  +|+ +++++++..+.+.+.|+.++  .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~-~kI~IIG~G~mG~slA~~l~~~------G~~~~V~-~~dr~~~~~~~a~~~G~~~~--~   83 (314)
T 3ggo_A           14 LVPRGSHMKNIIKILKSLSM-QNVLIVGVGFMGGSFAKSLRRS------GFKGKIY-GYDINPESISKAVDLGIIDE--G   83 (314)
T ss_dssp             ---------------CCCSC-SEEEEESCSHHHHHHHHHHHHT------TCCSEEE-EECSCHHHHHHHHHTTSCSE--E
T ss_pred             ccccccCcCcCCchhhhcCC-CEEEEEeeCHHHHHHHHHHHhC------CCCCEEE-EEECCHHHHHHHHHCCCcch--h
Confidence            3555666221 11 133344 8999999999999999999999      98  765 45555666777888887521  2


Q ss_pred             cCCHHh-hhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhH
Q 021356          169 LGDIYE-TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSV  244 (313)
Q Consensus       169 ~~~~~e-~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~  244 (313)
                      ..++++ ++++||+||+++|++...++++++.++++++++|+|+++++.   ..+.+   .+++  +||..||... ++.
T Consensus        84 ~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G-~e~  157 (314)
T 3ggo_A           84 TTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAG-TEK  157 (314)
T ss_dssp             ESCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCC-CCC
T ss_pred             cCCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccC-Ccc
Confidence            347778 899999999999999999999999999999999999998863   33332   3333  8999999542 110


Q ss_pred             HHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                       ..+...+...+.|..+++||.+..++++++.++.+++.+| .+++.++.++|
T Consensus       158 -sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~~h  208 (314)
T 3ggo_A          158 -SGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVG-GVVEYMSPELH  208 (314)
T ss_dssp             -CSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTT-CEEEECCHHHH
T ss_pred             -cchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence             0000111122246789999998899999999999999999 57888888887

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=9.5e-20  Score=175.11  Aligned_cols=171  Identities=13%  Similarity=0.115  Sum_probs=129.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc----CCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~----ADvIiLavP  187 (313)
                      ++|+|||+|+||+++|++|++.      |++|++ ++++++..+.+.+.|+..    ..++++++++    +|+||+++|
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~-~dr~~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP   77 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAA------NHSVFG-YNRSRSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP   77 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT------TCCEEE-ECSCHHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHC------CCEEEE-EeCCHHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence            7899999999999999999999      988754 455566677788888753    4577787764    799999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +....++++++.++ +++++|+|+++++....+.....++ +.+||..||.. +.+. ..+..+....+.|.++++||.+
T Consensus        78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPma-G~e~-sG~~aa~~~Lf~g~~~iltp~~  153 (341)
T 3ktd_A           78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMA-GTAN-SGWSASMDGLFKRAVWVVTFDQ  153 (341)
T ss_dssp             HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECC-SCC--CCGGGCCSSTTTTCEEEECCGG
T ss_pred             HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccc-cccc-cchhhhhhHHhcCCeEEEEeCC
Confidence            99888899988886 8999999999997532221111333 57899999943 3220 1111233333457899999998


Q ss_pred             CCCHH--------HHHHHHHHHHHcCCCceeecChhHHH
Q 021356          268 DVDGR--------ATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       268 d~~~e--------a~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      +++++        +++.++.+++.+| .+++.+++++|=
T Consensus       154 ~~~~e~~~~~~~~~~~~v~~l~~~~G-a~v~~~~~~~HD  191 (341)
T 3ktd_A          154 LFDGTDINSTWISIWKDVVQMALAVG-AEVVPSRVGPHD  191 (341)
T ss_dssp             GTSSCCCCHHHHHHHHHHHHHHHHTT-CEEEECCHHHHH
T ss_pred             CCChhhhccchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence            88888        9999999999999 468889998884

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.80  E-value=2.7e-19  Score=166.30  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=124.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc---EEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||+|+||.+++++|.+.      |+   +|++++++.+ ..+...+ .|+..    ..++.++++++|+||+++|
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~-~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~   72 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLD-KLDFFKEKCGVHT----TQDNRQGALNADVVVLAVK   72 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSH-HHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSC
T ss_pred             CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHH-HHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeC
Confidence            8999999999999999999998      87   7776666544 3444443 58763    4588899999999999999


Q ss_pred             chhHHHHHHHHHhc-CCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          188 DAAQADNYEKIFSC-MKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       188 ~~a~~~vi~ei~~~-mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      |+...++++++.++ ++++++|+ +++|+.+..++.   .++.+.+++++|||+|...       |     .|+.. +++
T Consensus        73 p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v-------~-----~g~~~-l~~  136 (280)
T 3tri_A           73 PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV-------R-----AGATG-LFA  136 (280)
T ss_dssp             GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG-------T-----CEEEE-EEC
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh-------c-----CccEE-EEe
Confidence            99999999999998 88887665 788998877765   4556678999999999876       3     45555 778


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCceeecChh
Q 021356          266 HQDVDGRATNVALGWSVALGSPFTFATTLE  295 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT~~  295 (313)
                      ..+++++.++.++.|++.+|.  +.....|
T Consensus       137 ~~~~~~~~~~~v~~l~~~iG~--~~~v~~E  164 (280)
T 3tri_A          137 NETVDKDQKNLAESIMRAVGL--VIWVSSE  164 (280)
T ss_dssp             CTTSCHHHHHHHHHHHGGGEE--EEECSSH
T ss_pred             CCCCCHHHHHHHHHHHHHCCC--eEEECCH
Confidence            888999999999999999994  4444333

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.78  E-value=8.4e-19  Score=158.91  Aligned_cols=154  Identities=22%  Similarity=0.300  Sum_probs=121.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|||+|+||.+++++|.+.      |+    +|.+++++ ++..+.. .+.|+..    ..++.|+++++|+||+++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~-~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav   71 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLN-TANLKNASEKYGLTT----TTDNNEVAKNADILILSI   71 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSC-HHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECS
T ss_pred             CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCC-HHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEe
Confidence            7899999999999999999998      87    77766554 3333333 3457763    568899999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      |++...++++++.+.++++++|+ +++|+++..++.   .++.+.++++.|||.|...       +     +|. ..+++
T Consensus        72 ~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~-------~-----~g~-~~~~~  135 (247)
T 3gt0_A           72 KPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV-------G-----EGM-SALCP  135 (247)
T ss_dssp             CTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG-------T-----CEE-EEEEE
T ss_pred             CHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH-------c-----Cce-EEEEe
Confidence            99999999999999999998876 788998766654   4455678999999998866       2     344 44788


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          266 HQDVDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                      ....+++..+.++.+++.+|.  ++..+.
T Consensus       136 ~~~~~~~~~~~~~~l~~~~G~--~~~~~e  162 (247)
T 3gt0_A          136 NEMVTEKDLEDVLNIFNSFGQ--TEIVSE  162 (247)
T ss_dssp             CTTCCHHHHHHHHHHHGGGEE--EEECCG
T ss_pred             CCCCCHHHHHHHHHHHHhCCC--EEEeCH
Confidence            888889999999999999995  555553

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.74  E-value=1.2e-17  Score=153.88  Aligned_cols=167  Identities=12%  Similarity=0.099  Sum_probs=125.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|+|||+|+||.++|+.|.+.    +.+++|++ ++++++..+.+.+.|..+  ....+++++++++|+||+++|++..
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~-~d~~~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~~   79 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRD----HPHYKIVG-YNRSDRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKKT   79 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----CTTSEEEE-ECSSHHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhC----CCCcEEEE-EcCCHHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHHH
Confidence            8999999999999999999876    11356654 444455555666677631  0134677889999999999999999


Q ss_pred             HHHHHHHHhc-CCCCcEEEEecCchh---hhhhhcccCCCC-CccEEEeccC------CCchhHHHHHHhcccccCCCce
Q 021356          192 ADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSIGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       192 ~~vi~ei~~~-mk~gaiLid~~Gv~l---~~~~~~~~~l~~-~i~vV~vhPn------~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      .++++++.++ ++++++|+++++++.   ..+.+   .+++ .++|+..||.      +|.....++|        .|.+
T Consensus        80 ~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~--------~g~~  148 (290)
T 3b1f_A           80 IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNLF--------ENAY  148 (290)
T ss_dssp             HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTTT--------TTSE
T ss_pred             HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHHh--------CCCe
Confidence            8899999999 999999999888754   33333   3343 6789999996      5554433333        3578


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      ++++|....+++..+.++.+++.+|. .++.++.++|
T Consensus       149 ~~~~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~~  184 (290)
T 3b1f_A          149 YIFSPSCLTKPNTIPALQDLLSGLHA-RYVEIDAAEH  184 (290)
T ss_dssp             EEEEECTTCCTTHHHHHHHHTGGGCC-EEEECCHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence            88999887888999999999999995 5666776665

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.72  E-value=5.5e-17  Score=148.70  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=122.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEccc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS  187 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiLavP  187 (313)
                      |++|+|||+|+||.++|+.|++.      |+  +|++ ++++++..+.+.+.|+.+.  ...+++++++ ++|+|++++|
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~-~d~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~aDvVilavp   71 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYG-YDINPESISKAVDLGIIDE--GTTSIAKVEDFSPDFVMLSSP   71 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEE-ECSCHHHHHHHHHTTSCSE--EESCGGGGGGTCCSEEEECSC
T ss_pred             CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEE-EeCCHHHHHHHHHCCCccc--ccCCHHHHhcCCCCEEEEcCC
Confidence            47999999999999999999998      87  7655 4555555566777787420  1346778899 9999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCC------CchhHHHHHHhcccccCCC
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAG  258 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G  258 (313)
                      ++...++++++.++++++++|+++++++.   ..+.+   .+++  .++..||..      |.....++        +.|
T Consensus        72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~~gp~~a~~~l--------~~g  138 (281)
T 2g5c_A           72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEKSGVEYSLDNL--------YEG  138 (281)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSCCSGGGCCSST--------TTT
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCccCChhhhhhHH--------hCC
Confidence            99999999999999999999999888753   22332   2232  377778733      12221111        246


Q ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      .+++++|+...+++..+.++++++.+|. +++.++.++|
T Consensus       139 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~  176 (281)
T 2g5c_A          139 KKVILTPTKKTDKKRLKLVKRVWEDVGG-VVEYMSPELH  176 (281)
T ss_dssp             CEEEECCCSSSCHHHHHHHHHHHHHTTC-EEEECCHHHH
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence            7888999988889999999999999995 5667776665

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.70  E-value=8e-18  Score=169.80  Aligned_cols=186  Identities=17%  Similarity=0.124  Sum_probs=134.7

Q ss_pred             ccccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      ++..+++. +|+|+|... +...+|.| ++|||||+|+||+++|+.|+++      |++|+++++. . ..+.+.+.|+.
T Consensus       117 ~~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~-~-~~~~a~~~g~~  186 (529)
T 1ygy_A          117 QIPAADAS-LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPY-V-SPARAAQLGIE  186 (529)
T ss_dssp             THHHHHHH-HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTT-S-CHHHHHHHTCE
T ss_pred             hhHHHHHH-HHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCC-C-ChhHHHhcCcE
Confidence            45667777 999999643 33478999 9999999999999999999999      9987655443 3 34556677876


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccch-hHHHHHH-HHHhcCCCCcEEEEecCch-h--hhhhh---cccCCCCCccEEEe
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLSHGFL-L--GHLQS---IGLDFPKNIGVIAV  235 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~-a~~~vi~-ei~~~mk~gaiLid~~Gv~-l--~~~~~---~~~~l~~~i~vV~v  235 (313)
                      .     .++++++++||+|++|+|++ ....+++ ++++.||+|++|++++-.. +  ..+.+   .+......++|+..
T Consensus       187 ~-----~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~  261 (529)
T 1ygy_A          187 L-----LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT  261 (529)
T ss_dssp             E-----CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSS
T ss_pred             E-----cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccC
Confidence            3     38899999999999999999 4556776 4889999999999876322 1  11111   11111124678899


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHH-----HHHHHHHcCCCc---eeecC-hhHH
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSPF---TFATT-LEQE  297 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~-----a~~L~~alG~~~---~~~tT-~~~e  297 (313)
                      ||. +.   ..||.        ..++++|||.. .+.++++.     +++++..++...   .+..+ +++|
T Consensus       262 eP~-~~---~~L~~--------~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~~~~~~~h  321 (529)
T 1ygy_A          262 EPC-TD---SPLFE--------LAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVN  321 (529)
T ss_dssp             SSC-SC---CGGGG--------CTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSCCSTTSC
T ss_pred             CCC-CC---chHHh--------CCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcccccc
Confidence            994 32   24665        46899999988 78888775     788999998753   34444 4443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.68  E-value=7.9e-17  Score=152.69  Aligned_cols=167  Identities=16%  Similarity=0.103  Sum_probs=120.3

Q ss_pred             ccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      ++..+++. +|+|+|. .....++.| ++|||||+|.||+++|+.++++      |++|++.++... . ..+.+.|+..
T Consensus       119 ~~~~~~~~-~~~g~w~-~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~-~-~~~~~~g~~~  187 (313)
T 2ekl_A          119 KMYTSMAL-AKSGIFK-KIEGLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDI-R-EKAEKINAKA  187 (313)
T ss_dssp             THHHHHHH-HHTTCCC-CCCCCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCC-H-HHHHHTTCEE
T ss_pred             CHHHHHHH-HHcCCCC-CCCCCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcc-h-hHHHhcCcee
Confidence            45667777 8999996 233479999 9999999999999999999999      999866655433 2 2466778762


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHH-HHH-HHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi-~ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~vV~v  235 (313)
                           .++++++++||+|++++|++..+ .++ ++.++.||+|++|++++.-.+       ..+++ +......++|+..
T Consensus       188 -----~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~  261 (313)
T 2ekl_A          188 -----VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKK-GKVYAYATDVFWN  261 (313)
T ss_dssp             -----CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHT-TCEEEEEESCCSS
T ss_pred             -----cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCCcEEEEecCCC
Confidence                 38899999999999999998754 477 478889999999998764322       11221 1111124688889


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA  277 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a  277 (313)
                      ||.. ......||.        ..|+++|||.. .+.++.+.+
T Consensus       262 eP~~-~~~~~~L~~--------~~nviltPH~~~~t~~~~~~~  295 (313)
T 2ekl_A          262 EPPK-EEWELELLK--------HERVIVTTHIGAQTKEAQKRV  295 (313)
T ss_dssp             SSCC-SHHHHHHHH--------STTEEECCSCTTCSHHHHHHH
T ss_pred             CCCC-CcccchHhh--------CCCEEECCccCcCcHHHHHHH
Confidence            9954 443446887        36899999864 345554443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.67  E-value=1.9e-15  Score=139.44  Aligned_cols=162  Identities=17%  Similarity=0.116  Sum_probs=118.7

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      +++|+|||+ |+||.++|+.|.+.      |++|++.++ +++..+...+.|+.     ..+..++++++|+||+++|++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r-~~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~   78 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEI-APEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN   78 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECC-SHHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEEC-CHHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence            379999999 99999999999999      998765554 44444555556754     236678899999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCchh----HHHHHHhcccccCCC------
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPS----VRRLYVQGKEINGAG------  258 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~G-v~l~~~~~~~~~l~~~i~vV~vhPn~pg~~----~r~lf~~G~e~~g~G------  258 (313)
                      ...++++++.+.++++++|++.+. ..+..++.   . ..+..|++.||+.+..-    ..+.+        .|      
T Consensus        79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~~--------~g~l~~~~  146 (286)
T 3c24_A           79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAAR--------TDYHGGIA  146 (286)
T ss_dssp             HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHHH--------TCSSSSSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhhc--------cCcccccc
Confidence            988899999999999999998544 33433332   2 34678999999987650    01122        24      


Q ss_pred             -ceEEEEeccCCCHHHHHHHHHHHHHcCCC--ceeecChhHH
Q 021356          259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQE  297 (313)
Q Consensus       259 -~~~iitp~~d~~~ea~e~a~~L~~alG~~--~~~~tT~~~e  297 (313)
                       ..+++++.. .+++..+.++.+++.+|.+  +++.++.++|
T Consensus       147 ~~~~i~~~~~-~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~  187 (286)
T 3c24_A          147 KQAIVCALMQ-GPEEHYAIGADICETMWSPVTRTHRVTTEQL  187 (286)
T ss_dssp             CEEEEEEEEE-SCTHHHHHHHHHHHHHTCSEEEEEECCHHHH
T ss_pred             cceeeeeccC-CCHHHHHHHHHHHHHhcCCcceEEEeChhHh
Confidence             355445444 5678999999999999974  5677775543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.67  E-value=4.2e-16  Score=147.03  Aligned_cols=156  Identities=15%  Similarity=0.114  Sum_probs=117.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      .+.- |+|+|||+|+||.++|++|.+.      |    ++|++++|..+ +..+...+.|+..    ..+..++++++|+
T Consensus        19 ~~~~-mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDv   87 (322)
T 2izz_A           19 YFQS-MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDV   87 (322)
T ss_dssp             ---C-CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSE
T ss_pred             ccCC-CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCE
Confidence            3344 7899999999999999999998      8    67776665543 2444555668764    3578889999999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~-~Gv~l~~~~~~-~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      ||+++|++...++++++.+.++++++|+++ .|+....+.+. ...++ +.++++.||+.|...       +     .|.
T Consensus        88 Vilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~-~~~vv~~~p~~p~~~-------~-----~g~  154 (322)
T 2izz_A           88 LFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRP-APRVIRCMTNTPVVV-------R-----EGA  154 (322)
T ss_dssp             EEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSS-CCEEEEEECCGGGGG-------T-----CEE
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCC-CCeEEEEeCCcHHHH-------c-----CCe
Confidence            999999998899999999999999999876 57765444321 01112 358999999888765       2     344


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          260 NSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       260 ~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                       .+++..++.+++..+.++.+++.+|..
T Consensus       155 -~v~~~g~~~~~~~~~~v~~ll~~~G~~  181 (322)
T 2izz_A          155 -TVYATGTHAQVEDGRLMEQLLSSVGFC  181 (322)
T ss_dssp             -EEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred             -EEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence             556677777889999999999999953

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.66  E-value=4.6e-16  Score=145.25  Aligned_cols=147  Identities=15%  Similarity=0.126  Sum_probs=112.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      ++|+||| +|+||.++|+.|++.      |++|++..+.. .                 .+..+++++||+||+++|++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~-~-----------------~~~~~~~~~aDvVilavp~~~   77 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDRED-W-----------------AVAESILANADVVIVSVPINL   77 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTC-G-----------------GGHHHHHTTCSEEEECSCGGG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCc-c-----------------cCHHHHhcCCCEEEEeCCHHH
Confidence            7999999 999999999999999      99877665432 1                 145678899999999999999


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD  270 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~  270 (313)
                      ..++++++.++++++++|+|++|++...++......+  .+|+..||. .++.. .+        ..|.+++++|+.  +
T Consensus        78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~-~g~~~-~~--------~~g~~~~l~~~~--~  143 (298)
T 2pv7_A           78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPM-FGADI-AS--------MAKQVVVRCDGR--F  143 (298)
T ss_dssp             HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEEC-SCTTC-SC--------CTTCEEEEEEEE--C
T ss_pred             HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCC-CCCCc-hh--------hcCCeEEEecCC--C
Confidence            9999999999999999999999986433321111223  579999994 23321 11        135678899876  5


Q ss_pred             HHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          271 GRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       271 ~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      ++..+.++++++.+|. +++.++.++|
T Consensus       144 ~~~~~~v~~l~~~~G~-~~~~~~~~~~  169 (298)
T 2pv7_A          144 PERYEWLLEQIQIWGA-KIYQTNATEH  169 (298)
T ss_dssp             GGGTHHHHHHHHHTTC-EEEECCHHHH
T ss_pred             HHHHHHHHHHHHHcCC-EEEECCHHHH
Confidence            7889999999999995 5677777765

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.66  E-value=2.4e-16  Score=148.95  Aligned_cols=166  Identities=18%  Similarity=0.113  Sum_probs=119.4

Q ss_pred             ccccchhhhhhcCCCcc-cccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           85 SLANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f-~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      ++..+++. +|+|+|.. .....+|.| ++|||||+|.||.++|+.++.+      |++|++.++.. .. +.+.+.|+.
T Consensus       117 ~~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~-~~-~~~~~~g~~  186 (307)
T 1wwk_A          117 KIAFADRK-MREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYP-NE-ERAKEVNGK  186 (307)
T ss_dssp             THHHHHHH-HTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSC-CH-HHHHHTTCE
T ss_pred             CHHHHHHH-HHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCC-Ch-hhHhhcCcc
Confidence            35566777 89999964 233479999 9999999999999999999999      99986655543 32 456677875


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~vV~  234 (313)
                           ..++++++++||+|++++|++..+ .+++ +.++.||+|++|++++.-.+       ..+++ +......++|+.
T Consensus       187 -----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~  260 (307)
T 1wwk_A          187 -----FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFE  260 (307)
T ss_dssp             -----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCS
T ss_pred             -----ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCC
Confidence                 247899999999999999998754 4674 78899999999998764321       22222 222223577888


Q ss_pred             eccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021356          235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA  277 (313)
Q Consensus       235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a  277 (313)
                      .||..+.+   .||.        ..|+++|||.. .+.++.+.+
T Consensus       261 ~eP~~~~~---~L~~--------~~nviltPh~~~~t~~~~~~~  293 (307)
T 1wwk_A          261 EEPLPKDH---PLTK--------FDNVVLTPHIGASTVEAQERA  293 (307)
T ss_dssp             SSSCCTTC---GGGG--------CTTEEECSSCTTCBHHHHHHH
T ss_pred             CCCCCCCC---hHHh--------CCCEEECCccccCcHHHHHHH
Confidence            88853333   3565        36899999874 345554444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.65  E-value=1.2e-15  Score=138.07  Aligned_cols=148  Identities=12%  Similarity=0.176  Sum_probs=115.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||+|+||.++|++|.+.      |    ++|.++++..+.       .|+..    ..+..++++++|+||+++|
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence            7899999999999999999988      8    577666655432       56653    4578889999999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      ++...++++++.+.++++.+|++++|+....+++   .++.+.++++.+|+.|...       +     .| .+++++..
T Consensus        68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~-------~-----~g-~~~~~~~~  131 (262)
T 2rcy_A           68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV-------G-----EG-SFIYCSNK  131 (262)
T ss_dssp             TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG-------T-----CE-EEEEEECT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH-------c-----CC-eEEEEeCC
Confidence            9988889999988885555667899998766554   3455456788888777654       2     46 56678877


Q ss_pred             CCCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          268 DVDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       268 d~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                      +.+++..+.++.+++.+|.  ++..+.
T Consensus       132 ~~~~~~~~~~~~ll~~~G~--~~~~~~  156 (262)
T 2rcy_A          132 NVNSTDKKYVNDIFNSCGI--IHEIKE  156 (262)
T ss_dssp             TCCHHHHHHHHHHHHTSEE--EEECCG
T ss_pred             CCCHHHHHHHHHHHHhCCC--EEEeCH
Confidence            7789999999999999994  666654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.65  E-value=4e-16  Score=149.57  Aligned_cols=164  Identities=16%  Similarity=0.083  Sum_probs=118.6

Q ss_pred             ccccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      ++..+++. +|+|+|... +...+|.| ++|||||+|.||+++|+.++.+      |++|++.++...+  +.+.+.|+.
T Consensus       140 ~~~~~~~~-~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~  209 (335)
T 2g76_A          140 QIPQATAS-MKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ  209 (335)
T ss_dssp             THHHHHHH-HHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE
T ss_pred             chHHHHHH-HHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce
Confidence            45567777 899999643 23479999 9999999999999999999999      9998665554332  356677875


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~vV~  234 (313)
                           ..++++++++||+|++++|.+..+ .+++ +.++.||+|++|++++...+       ..+++ +......++|+.
T Consensus       210 -----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~-g~i~gA~lDV~~  283 (335)
T 2g76_A          210 -----QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQS-GQCAGAALDVFT  283 (335)
T ss_dssp             -----ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEEEESCCS
T ss_pred             -----eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHh-CCccEEEEeecC
Confidence                 248899999999999999999755 4774 78999999999998764321       22222 111122467888


Q ss_pred             eccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHH
Q 021356          235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV  276 (313)
Q Consensus       235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~  276 (313)
                      .|| .+.   ..||.        ..|+++|||.. .+.++.+.
T Consensus       284 ~EP-~~~---~~L~~--------~~nvilTPH~~~~t~e~~~~  314 (335)
T 2g76_A          284 EEP-PRD---RALVD--------HENVISCPHLGASTKEAQSR  314 (335)
T ss_dssp             SSS-CSC---CHHHH--------STTEEECSSCTTCBHHHHHH
T ss_pred             CCC-CCC---chHHh--------CCCEEECCcCCCCCHHHHHH
Confidence            999 333   34676        36899999863 34555443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.64  E-value=1.9e-15  Score=137.24  Aligned_cols=163  Identities=19%  Similarity=0.147  Sum_probs=111.9

Q ss_pred             cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc--------------cHHHHHHCCceecCCCc
Q 021356          104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTL  169 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~--------------s~~~A~~~G~~~~~~~~  169 (313)
                      ...++.+ ++|||||+|+||.++|++|.+.      |++|+++++..++              ..+.+.+.|...    .
T Consensus        13 ~~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   81 (245)
T 3dtt_A           13 ENLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----L   81 (245)
T ss_dssp             ------C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----E
T ss_pred             cccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----c
Confidence            4578899 9999999999999999999999      9998877665332              112222234332    4


Q ss_pred             CCHHhhhccCCEEEEcccchhHHHHHHHH-HhcCCCCcEEEEec-Cc----------------h-hhhhhhcccCCCCCc
Q 021356          170 GDIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSIGLDFPKNI  230 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a~~~vi~ei-~~~mk~gaiLid~~-Gv----------------~-l~~~~~~~~~l~~~i  230 (313)
                      .++.|++++||+||+++|++...+++.++ .+.+ ++++|+|++ |+                . ...+++   .+|. .
T Consensus        82 ~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~~-~  156 (245)
T 3dtt_A           82 AAFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFPE-A  156 (245)
T ss_dssp             EEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HSTT-S
T ss_pred             cCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCCC-C
Confidence            57889999999999999999999988888 7777 899999877 21                1 233443   4454 6


Q ss_pred             cEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      ++|+.+|+.+.+...+.-..     -.|...++...+  ++++.+.++.+++.+|+..+
T Consensus       157 ~vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~  208 (245)
T 3dtt_A          157 KVVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDV  208 (245)
T ss_dssp             EEEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCE
T ss_pred             eEEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCCce
Confidence            89999999988885321100     012233233333  47899999999999998653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.64  E-value=2.6e-15  Score=137.18  Aligned_cols=166  Identities=16%  Similarity=0.125  Sum_probs=118.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |+|+|||+|+||.++++.|.+.      |++|++. +++++..+.+.+.|..+.  ...+++++ +++|+|++++|++..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~-~~~~~~~~~~~~~g~~~~--~~~~~~~~-~~~D~vi~av~~~~~   70 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGV-SRQQSTCEKAVERQLVDE--AGQDLSLL-QTAKIIFLCTPIQLI   70 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTSCSE--EESCGGGG-TTCSEEEECSCHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC------CCEEEEE-ECCHHHHHHHHhCCCCcc--ccCCHHHh-CCCCEEEEECCHHHH
Confidence            5899999999999999999998      9887655 444455555666776410  13467788 999999999999988


Q ss_pred             HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCC----chhHHHHHHhcccccCCCceEEEEecc
Q 021356          192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM----GPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~p----g~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      .++++++.+.++++++|+++++++...++.....++   +++..||...    ++..      .....+.|..+++++..
T Consensus        71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~------a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDG------AEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGG------CCTTTTTTCEEEEEECT
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHH------HhHHHhCCCcEEEecCC
Confidence            899999999999999999988776433322111222   6888888430    1110      11111235678889987


Q ss_pred             CCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021356          268 DVDGRATNVALGWSVALGSPFTFATTLEQE  297 (313)
Q Consensus       268 d~~~ea~e~a~~L~~alG~~~~~~tT~~~e  297 (313)
                      ..+++..+.++++++.+|. +++.++..+|
T Consensus       142 ~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~  170 (279)
T 2f1k_A          142 YTDPEQLACLRSVLEPLGV-KIYLCTPADH  170 (279)
T ss_dssp             TCCHHHHHHHHHHHGGGTC-EEEECCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence            7789999999999999995 4555554443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.64  E-value=2.1e-16  Score=150.20  Aligned_cols=167  Identities=16%  Similarity=0.154  Sum_probs=116.3

Q ss_pred             ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccHHHHHH
Q 021356           85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARA  159 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~  159 (313)
                      ++..+++. +|+|+|. +.   ....+|.| ++|||||+|+||+++|+.++.+      |++|++.++ .. .. ..+.+
T Consensus       118 ~~~~~~~~-~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~-~~-~~~~~  187 (320)
T 1gdh_A          118 RAGEGEKM-IRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRA-SS-SDEAS  187 (320)
T ss_dssp             THHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCC-CH-HHHHH
T ss_pred             cHHHHHHH-HHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-Ch-hhhhh
Confidence            35556777 8999995 22   23469999 9999999999999999999999      999866655 43 32 34556


Q ss_pred             CCceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCc
Q 021356          160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNI  230 (313)
Q Consensus       160 ~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i  230 (313)
                      .|+..    ..++++++++||+|++++|++..+ .+++ +.++.||+|++|++++.-.+       ..+++ +.......
T Consensus       188 ~g~~~----~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~-g~i~gA~l  262 (320)
T 1gdh_A          188 YQATF----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGF  262 (320)
T ss_dssp             HTCEE----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEE
T ss_pred             cCcEE----cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCcEEEE
Confidence            67652    337899999999999999988754 4774 68899999999998764321       12222 11112246


Q ss_pred             cEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHHH
Q 021356          231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL  278 (313)
Q Consensus       231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a~  278 (313)
                      +|+..+| .+.   ..||.        ..|+++|||.. .+.++.+.+.
T Consensus       263 Dv~~~eP-~~~---~~L~~--------~~nviltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          263 DVFAGEP-NIN---EGYYD--------LPNTFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             SCCTTTT-SCC---TTGGG--------CTTEEECSSCTTCBHHHHHHHH
T ss_pred             eCCCCCC-CCC---Chhhh--------CCCEEECCcCCcCcHHHHHHHH
Confidence            6777788 222   34665        36899999864 3455544443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.61  E-value=1.9e-15  Score=142.78  Aligned_cols=161  Identities=11%  Similarity=0.029  Sum_probs=111.1

Q ss_pred             ccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      ++..+++. +|+|+|....+..+|.| ++|||||+|.||+++|+.++++      |++|++.++...   +    .+...
T Consensus       100 ~~~~~~~~-~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~----~~~~~  164 (303)
T 1qp8_A          100 RIIQYGEK-MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---E----GPWRF  164 (303)
T ss_dssp             THHHHHHH-HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---C----SSSCC
T ss_pred             CHHHHHHH-HHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---c----cCccc
Confidence            35566777 89999964434468999 9999999999999999999999      999866555432   1    13321


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..++++++++||+|++|+|++..+ .+++ +.++.||+|++|++++...+       ..+++ +.......++.  
T Consensus       165 ----~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~-g~i~gA~lDv~--  237 (303)
T 1qp8_A          165 ----TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKE-RPQFIFASDVW--  237 (303)
T ss_dssp             ----BSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHH-CTTCEEEESCC--
T ss_pred             ----CCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHh-CCceEEEeccC--
Confidence                357889999999999999999754 4775 78999999999998875422       12222 11111123333  


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEeccCC---CHHHHH
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATN  275 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~---~~ea~e  275 (313)
                      ....|.+....||.        ..|+++|||...   +.++.+
T Consensus       238 ~~~ep~~~~~~L~~--------~~nviltPH~~~~~~t~e~~~  272 (303)
T 1qp8_A          238 WGRNDFAKDAEFFS--------LPNVVATPWVAGGYGNERVWR  272 (303)
T ss_dssp             TTTTCCGGGHHHHT--------STTEEECCSCSSSSSCHHHHH
T ss_pred             CCCCCCCCCChhhc--------CCCEEECCCcCCCCCCHHHHH
Confidence            02244444456776        368999999753   566644

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.61  E-value=4.1e-16  Score=146.91  Aligned_cols=158  Identities=16%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      +..|++. +++|+|.... ..+|.| ++|||||+|.||+++|+.|+.+      |++|+++++.... .     ..+.. 
T Consensus       100 ~~~~~~~-~~~g~w~~~~-~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~-----~~~~~-  163 (290)
T 3gvx_A          100 ILENNEL-MKAGIFRQSP-TTLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVD-Q-----NVDVI-  163 (290)
T ss_dssp             HHHHHHH-HHTTCCCCCC-CCCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCC-T-----TCSEE-
T ss_pred             hhhhhhH-hhhcccccCC-ceeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEeccccc-c-----ccccc-
Confidence            4556767 8999997653 488999 9999999999999999999999      9998766554322 1     11221 


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHH-HH-HHHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC  236 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi-~ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vh  236 (313)
                         ..+++|++++||+|++++|++..++ ++ .+.++.||+|++|++++ |-.      ...+++ +.......+|+..+
T Consensus       164 ---~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~ga~lDV~~~E  239 (290)
T 3gvx_A          164 ---SESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKE-RSDVWYLSDVWWNE  239 (290)
T ss_dssp             ---CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHH-CTTCEEEESCCTTT
T ss_pred             ---cCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhh-ccceEEeeccccCC
Confidence               4489999999999999999877665 66 48899999999999887 321      122322 22223356777778


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEecc--CCCHHHHHHH
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNVA  277 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~--d~~~ea~e~a  277 (313)
                      |..      .++.        -.|+++|||-  ..+.++.+.+
T Consensus       240 P~~------pL~~--------~~nvilTPHiag~~t~e~~~~~  268 (290)
T 3gvx_A          240 PEI------TETN--------LRNAILSPHVAGGMSGEIMDIA  268 (290)
T ss_dssp             TSC------CSCC--------CSSEEECCSCSSCBTTBCCHHH
T ss_pred             ccc------chhh--------hhhhhcCccccCCccchHHHHH
Confidence            841      1232        3689999993  3455544443

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.61  E-value=1.6e-15  Score=146.41  Aligned_cols=165  Identities=19%  Similarity=0.157  Sum_probs=117.4

Q ss_pred             ccccchhhhhhcCCCccc-----------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc
Q 021356           85 SLANRDEFIVRGGRDLFK-----------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS  153 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-----------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s  153 (313)
                      ++..|++. +|+|+|...           ....+|.| ++|||||+|.||+++|+.++++      |++|+++++. . .
T Consensus       125 ~~~~~~~~-~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~-~-~  194 (352)
T 3gg9_A          125 RIPQYVAS-LKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE-N-S  194 (352)
T ss_dssp             THHHHHHH-HHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH-H-H
T ss_pred             hHHHHHHH-HHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC-C-C
Confidence            35557777 899999642           13579999 9999999999999999999999      9997665543 2 3


Q ss_pred             HHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhccc
Q 021356          154 FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGL  224 (313)
Q Consensus       154 ~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~  224 (313)
                      .+.+.+.|+..    ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++--.       ...+++ +.
T Consensus       195 ~~~~~~~g~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~  269 (352)
T 3gg9_A          195 KERARADGFAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNR-GR  269 (352)
T ss_dssp             HHHHHHTTCEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHH-TS
T ss_pred             HHHHHhcCceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHh-CC
Confidence            34566778763    4589999999999999999988665 665 7899999999999887321       223332 22


Q ss_pred             CCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHH
Q 021356          225 DFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN  275 (313)
Q Consensus       225 ~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e  275 (313)
                      .....++|+..+|..+.+.   ++.        --|.++|||- ..+.++.+
T Consensus       270 i~gA~lDV~~~EPl~~~~p---L~~--------~~nvilTPHia~~t~e~~~  310 (352)
T 3gg9_A          270 PGMAAIDVFETEPILQGHT---LLR--------MENCICTPHIGYVERESYE  310 (352)
T ss_dssp             SSEEEECCCSSSCCCSCCG---GGG--------CTTEEECCSCTTCBHHHHH
T ss_pred             ccEEEecccCCCCCCCCCh---hhc--------CCCEEECCCCCCCCHHHHH
Confidence            2223566777777443333   333        2589999986 33444433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.59  E-value=1.2e-14  Score=134.49  Aligned_cols=154  Identities=15%  Similarity=0.121  Sum_probs=114.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-----------C--ceec--------CCCc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--FTEE--------NGTL  169 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------G--~~~~--------~~~~  169 (313)
                      +++|+|||+|.||.++|+.+...      |++|++.++. ++..+.+.+.           |  ...+        -...
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~   76 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDIN-TDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS   76 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe
Confidence            48999999999999999999999      9998766544 4434333332           1  1000        0013


Q ss_pred             CCHHhhhccCCEEEEcccch--hHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021356          170 GDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~--a~~~vi~ei~~~mk~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      .++++++++||+||+++|++  ...++++++.+.++++++|++ +++..+..+..   .++...++++.||..|...   
T Consensus        77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~~---  150 (283)
T 4e12_A           77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVWV---  150 (283)
T ss_dssp             SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTTT---
T ss_pred             CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCccc---
Confidence            57888999999999999998  445588899999999999885 56666655543   2234468999999877654   


Q ss_pred             HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                                 +....++++..++++.++.++.+++.+|..-
T Consensus       151 -----------~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~  181 (283)
T 4e12_A          151 -----------NNTAEVMGTTKTDPEVYQQVVEFASAIGMVP  181 (283)
T ss_dssp             -----------SCEEEEEECTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             -----------CceEEEEeCCCCCHHHHHHHHHHHHHcCCEE
Confidence                       3456788999999999999999999999543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.59  E-value=1.1e-15  Score=147.39  Aligned_cols=166  Identities=14%  Similarity=0.106  Sum_probs=117.8

Q ss_pred             cccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           86 LANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +..+++. +++|+|...   ....+|.| ++|||||+|.||.++|+.|+.+      |++|++.++. ....+.+.+.|+
T Consensus       138 ~~~~~~~-~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~  208 (351)
T 3jtm_A          138 FVPGYNQ-VVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRL-QMAPELEKETGA  208 (351)
T ss_dssp             HHHHHHH-HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSS-CCCHHHHHHHCC
T ss_pred             cHHHHHH-HHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCC-ccCHHHHHhCCC
Confidence            5556667 899999653   23578999 9999999999999999999999      9997655544 334556666777


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEE
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV  233 (313)
                      ..    ..+++|++++||+|++|+|.+..+. +++ +.++.||+|++|++++ |-.      ...+++ +.......+|.
T Consensus       209 ~~----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~  283 (351)
T 3jtm_A          209 KF----VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES-GHIGGYSGDVW  283 (351)
T ss_dssp             EE----CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCC
T ss_pred             eE----cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHh-CCccEEEeCCC
Confidence            53    4589999999999999999887654 664 8899999999999876 321      122332 22222346677


Q ss_pred             EeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021356          234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV  276 (313)
Q Consensus       234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~  276 (313)
                      ..+|..+.+.   ++.        --|.++|||- ..+.++.+.
T Consensus       284 ~~EP~~~~~p---L~~--------~~nvilTPHia~~t~ea~~~  316 (351)
T 3jtm_A          284 DPQPAPKDHP---WRY--------MPNQAMTPHTSGTTIDAQLR  316 (351)
T ss_dssp             SSSSCCTTCG---GGT--------STTBCCCCSCGGGSHHHHHH
T ss_pred             CCCCCCCCCh---hhc--------CCCEEECCcCCCCCHHHHHH
Confidence            7777544433   332        1478899993 455555544

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.59  E-value=6.6e-15  Score=141.52  Aligned_cols=162  Identities=20%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             ccccchhhhhhcCCCccc--c-cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           85 SLANRDEFIVRGGRDLFK--L-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~--~-~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      ++..+++. +|+|+|...  + ...+|.| |+|||||+|.||+++|+.++.+      |++|+++++....      ..+
T Consensus       144 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~  209 (340)
T 4dgs_A          144 RVGDGDRL-VREGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVD  209 (340)
T ss_dssp             THHHHHHH-HHTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSC
T ss_pred             ChHHHHHH-HhcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccC
Confidence            45567777 999999653  2 2479999 9999999999999999999999      9998766654322      234


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HH-HHHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi-~ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~v  232 (313)
                      +..    ..+++|++++||+|++++|.+..++ ++ ++.++.||+|++|++++ |-.+      ..+++ +......++|
T Consensus       210 ~~~----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV  284 (340)
T 4dgs_A          210 WIA----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKS-GTIAGAGLDV  284 (340)
T ss_dssp             CEE----CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------CCSSEEEESC
T ss_pred             cee----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCceEEEeCC
Confidence            432    4589999999999999999888765 77 48899999999999876 3221      11221 1122234677


Q ss_pred             EEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021356          233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA  277 (313)
Q Consensus       233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a  277 (313)
                      +..+|..+.    .|+..        -|.++|||- ..+.++.+.+
T Consensus       285 f~~EP~~~~----~L~~~--------~nvilTPHia~~t~e~~~~~  318 (340)
T 4dgs_A          285 FVNEPAIRS----EFHTT--------PNTVLMPHQGSATVETRMAM  318 (340)
T ss_dssp             CSSSSSCCS----HHHHS--------SSEEECSSCSSCCHHHHHHH
T ss_pred             cCCCCCCcc----chhhC--------CCEEEcCcCCcCCHHHHHHH
Confidence            778885432    35552        589999985 4445554443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.59  E-value=7e-15  Score=133.15  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=111.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      +++|+|||+|.||.++++.|.+.      |.+|.+.+++ ++..+ .+.+.|+..    ..+.+++++++|+|++++|+.
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~-~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~   71 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSS-LERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQ   71 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSS-HHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGG
T ss_pred             ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCC-HHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcH
Confidence            47999999999999999999988      8877655544 33333 333447653    457889999999999999988


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          190 AQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~-~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      .+.+++.+    +++|++|++. .|+....+++   .++.+.++++.||+.|...       +     .| ...+++...
T Consensus        72 ~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~-------~-----~g-~~~i~~~~~  131 (259)
T 2ahr_A           72 LFETVLKP----LHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI-------L-----QS-STALTGNAL  131 (259)
T ss_dssp             GHHHHHTT----SCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG-------T-----CE-EEEEEECTT
T ss_pred             hHHHHHHH----hccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH-------c-----Cc-eEEEEcCCC
Confidence            76666654    4588888876 5777655554   3344568899999877665       2     34 344677777


Q ss_pred             CCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          269 VDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                      .+++..+.++.+++.+|  .++.++.
T Consensus       132 ~~~~~~~~~~~ll~~~G--~~~~~~~  155 (259)
T 2ahr_A          132 VSQELQARVRDLTDSFG--STFDISE  155 (259)
T ss_dssp             CCHHHHHHHHHHHHTTE--EEEECCG
T ss_pred             CCHHHHHHHHHHHHhCC--CEEEecH
Confidence            78999999999999999  4666664

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.59  E-value=1.4e-15  Score=148.90  Aligned_cols=166  Identities=14%  Similarity=0.023  Sum_probs=115.9

Q ss_pred             ccccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      ++..+++. +|+|+|...   ....+|.| ++|||||+|.||+++|+.++.+      |++|++.++. ....+.+.+.|
T Consensus       164 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~-~~~~~~~~~~G  234 (393)
T 2nac_A          164 NYLPSHEW-ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRH-RLPESVEKELN  234 (393)
T ss_dssp             THHHHHHH-HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSS-CCCHHHHHHHT
T ss_pred             ccHHHHHH-HHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCC-ccchhhHhhcC
Confidence            34456666 899999642   12468999 9999999999999999999999      9997655544 33344566667


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~v  232 (313)
                      +..    ..++++++++||+|++|+|.+..+ .+++ +.++.||+|++|++++--.+       ..+++ +......++|
T Consensus       235 ~~~----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~lDV  309 (393)
T 2nac_A          235 LTW----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDV  309 (393)
T ss_dssp             CEE----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESC
T ss_pred             cee----cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc-CCeeEEEEEe
Confidence            763    347899999999999999988654 4774 78899999999998763321       12222 1111234677


Q ss_pred             EEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHH
Q 021356          233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN  275 (313)
Q Consensus       233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e  275 (313)
                      +..+|..+.+.   ++.        ..|+++|||- ..+.++.+
T Consensus       310 ~~~EP~~~~~p---L~~--------~~nvilTPHia~~T~e~~~  342 (393)
T 2nac_A          310 WFPQPAPKDHP---WRT--------MPYNGMTPHISGTTLTAQA  342 (393)
T ss_dssp             CSSSSCCTTCG---GGT--------STTBCCCCSCTTCSHHHHH
T ss_pred             cCCCCCCCCCh---hHc--------CCCEEECCCCCcCcHHHHH
Confidence            77888544333   443        3588899986 33444443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.58  E-value=6.2e-15  Score=143.00  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=116.3

Q ss_pred             ccccchhhhhhcCCCccc----ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356           85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      ++..+++. +|+|+|.+.    ....+|.| ++|||||+|.||+++|+.++.+      |++|+++++. . ..+.+.+.
T Consensus       148 ~~~~~~~~-~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~-~-~~~~~~~~  217 (365)
T 4hy3_A          148 GIVDADIA-FQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPW-L-PRSMLEEN  217 (365)
T ss_dssp             TTTHHHHH-HHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSS-S-CHHHHHHT
T ss_pred             chhHHHHH-HHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCC-C-CHHHHhhc
Confidence            45566777 899995432    24589999 9999999999999999999999      9998766554 2 34455667


Q ss_pred             CceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021356          161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG  231 (313)
Q Consensus       161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~  231 (313)
                      |+.     ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-.      ...+++ +.+ ...++
T Consensus       218 g~~-----~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i-~aaLD  290 (365)
T 4hy3_A          218 GVE-----PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSS-GHI-VAASD  290 (365)
T ss_dssp             TCE-----ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHT-TSS-EEEES
T ss_pred             Cee-----eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHc-CCc-eEEee
Confidence            876     3489999999999999999987765 664 8899999999999876 321      233333 222 23566


Q ss_pred             EEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021356          232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV  276 (313)
Q Consensus       232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~  276 (313)
                      |+..+|..+.+.   |+.        --|.++|||- ..+.++.+.
T Consensus       291 V~~~EPl~~~~p---L~~--------~~nvilTPHia~~t~e~~~~  325 (365)
T 4hy3_A          291 VYPEEPLPLDHP---VRS--------LKGFIRSAHRAGALDSAFKK  325 (365)
T ss_dssp             CCSSSSCCTTCG---GGT--------CTTEEECCSCSSCCHHHHHH
T ss_pred             CCCCCCCCCCCh---hhc--------CCCEEECCccccCHHHHHHH
Confidence            777777544333   333        2589999986 345555443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.58  E-value=3.4e-15  Score=141.44  Aligned_cols=161  Identities=20%  Similarity=0.190  Sum_probs=111.5

Q ss_pred             ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356           85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      ++..+++. +|+|+|. +.   ....++.| ++|||||+|.||+++|+.++++      |++|++.++..... .     
T Consensus       116 ~~~~~~~~-~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~-~-----  181 (311)
T 2cuk_A          116 RVVEGAAY-ARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPL-P-----  181 (311)
T ss_dssp             THHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS-S-----
T ss_pred             ChHHHHHH-HHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCccc-c-----
Confidence            35566777 8999995 21   23468999 9999999999999999999999      99986665543321 1     


Q ss_pred             CceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCchh---hhhhh--cccCCCCCccEE
Q 021356          161 GFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL---GHLQS--IGLDFPKNIGVI  233 (313)
Q Consensus       161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv~l---~~~~~--~~~~l~~~i~vV  233 (313)
                       +.     ..++++++++||+|++++|++..+ .+++ +.++.||+|+++++++...+   ..+.+  .+......++|+
T Consensus       182 -~~-----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~  255 (311)
T 2cuk_A          182 -YP-----FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVT  255 (311)
T ss_dssp             -SC-----BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSC
T ss_pred             -cc-----cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeC
Confidence             11     348899999999999999999654 5775 78889999999998765432   11111  011112246677


Q ss_pred             EeccCCCchhHHHHHHhcccccCCCceEEEEeccCC-CHHHHHH
Q 021356          234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV-DGRATNV  276 (313)
Q Consensus       234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~-~~ea~e~  276 (313)
                      ..||..+.+   .||.        ..|+++|||... +.++.+.
T Consensus       256 ~~eP~~~~~---~L~~--------~~nviltPh~~~~t~~~~~~  288 (311)
T 2cuk_A          256 DPEPLPPGH---PLYA--------LPNAVITPHIGSAGRTTRER  288 (311)
T ss_dssp             SSSSCCTTS---GGGG--------CTTEEECCSCTTCBHHHHHH
T ss_pred             CCCCCCCCC---hhhh--------CCCEEECCcCCCCCHHHHHH
Confidence            788843332   3565        368999998743 3444333

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.58  E-value=3.3e-15  Score=143.84  Aligned_cols=165  Identities=19%  Similarity=0.208  Sum_probs=114.5

Q ss_pred             ccccchhhhhhcCCCcc----cccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356           85 SLANRDEFIVRGGRDLF----KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f----~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      ++..+++. +|+|+|..    .+...+|.| ++|||||+|.||+++|+.++.+      |++|+++++.. ...+.+  .
T Consensus       145 ~~~~~~~~-~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~-~~~~~~--~  213 (345)
T 4g2n_A          145 RGYEADRM-VRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTR-LSHALE--E  213 (345)
T ss_dssp             THHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSC-CCHHHH--T
T ss_pred             CHHHHHHH-HHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCC-cchhhh--c
Confidence            35566767 89999963    123579999 9999999999999999999999      99987665543 222222  2


Q ss_pred             CceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021356          161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG  231 (313)
Q Consensus       161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~  231 (313)
                      |+..    ..+++|++++||+|++++|.+..+. +++ +.++.||+|++|++++ |-.      +..+++ +......++
T Consensus       214 g~~~----~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~LD  288 (345)
T 4g2n_A          214 GAIY----HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRS-KHLFAAGLD  288 (345)
T ss_dssp             TCEE----CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEES
T ss_pred             CCeE----eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCceEEEec
Confidence            6552    3489999999999999999887765 664 8899999999999876 321      223332 222233566


Q ss_pred             EEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021356          232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA  277 (313)
Q Consensus       232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a  277 (313)
                      |...+| .+.+.   |+.        --|.++|||- ..+.++.+.+
T Consensus       289 Vf~~EP-~~~~p---L~~--------~~nvilTPHia~~t~e~~~~~  323 (345)
T 4g2n_A          289 VFANEP-AIDPR---YRS--------LDNIFLTPHIGSATHETRDAM  323 (345)
T ss_dssp             CCTTTT-SCCTT---GGG--------CTTEEECCSCTTCBHHHHHHH
T ss_pred             CCCCCC-CCCch---HHh--------CCCEEEcCccCcCCHHHHHHH
Confidence            777788 33322   333        2589999985 3344444433

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.57  E-value=3.8e-15  Score=142.33  Aligned_cols=166  Identities=20%  Similarity=0.252  Sum_probs=115.9

Q ss_pred             cccchhhhhhcCCCc-cc--ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           86 LANRDEFIVRGGRDL-FK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~-f~--~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +..+++. +|+|+|. +.  ....+|.| ++|||||+|.||+++|+.++.+      |++|++.++. ....+.+.+.|+
T Consensus       119 ~~~~~~~-~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~-~~~~~~~~~~g~  189 (330)
T 4e5n_A          119 LRAADAF-VRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAK-ALDTQTEQRLGL  189 (330)
T ss_dssp             HHHHHHH-HHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSS-CCCHHHHHHHTE
T ss_pred             hHHHHHH-HHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-CCcHhHHHhcCc
Confidence            5556777 8999995 32  23478999 9999999999999999999999      9997655544 333445556677


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhcccCCCCCccEE
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~~l~~~i~vV  233 (313)
                      .     ..++++++++||+|++|+|.+..+. +++ +.++.||+|++|++++--.       ...+++ +......++|.
T Consensus       190 ~-----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~-g~i~gA~lDV~  263 (330)
T 4e5n_A          190 R-----QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALER-GQLGGYAADVF  263 (330)
T ss_dssp             E-----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCC
T ss_pred             e-----eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCccEEEeccc
Confidence            5     3489999999999999999887654 665 8999999999999876321       122222 11212345666


Q ss_pred             Eec-------cCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021356          234 AVC-------PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA  277 (313)
Q Consensus       234 ~vh-------Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a  277 (313)
                      ..+       |..+.+   .|+..        -|.++|||- ..+.++.+.+
T Consensus       264 ~~E~~~~~~~Pl~~~~---~L~~~--------~nvilTPHia~~t~e~~~~~  304 (330)
T 4e5n_A          264 EMEDWARADRPQQIDP---ALLAH--------PNTLFTPHIGSAVRAVRLEI  304 (330)
T ss_dssp             GGGCTTCTTCCSSCCH---HHHTC--------SSEEECSSCTTCCHHHHHHH
T ss_pred             ccccccccCCCCCCCc---hHHcC--------CCEEECCcCCCChHHHHHHH
Confidence            666       643332   35542        589999986 3445544443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.57  E-value=6.9e-15  Score=133.06  Aligned_cols=146  Identities=15%  Similarity=0.212  Sum_probs=108.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |+|+|||+|+||.++|+.|.+.      | ++|.+.++..+...+.+.+.|+..    ..+.++++ ++|+|++++|+..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~   69 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD   69 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence            5899999999999999999998      9 887666554333223333357663    34667788 9999999999877


Q ss_pred             HHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCC
Q 021356          191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV  269 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~-~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~  269 (313)
                      ..++++++.+  + +++|+++ +|+....+.+   .++.+.++++.+|+.|...       +     .|... +++..+.
T Consensus        70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~-------~-----~g~~~-i~~~~~~  130 (263)
T 1yqg_A           70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI-------G-----LGVSG-MYAEAEV  130 (263)
T ss_dssp             HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG-------T-----CEEEE-EECCTTS
T ss_pred             HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH-------c-----CceEE-EEcCCCC
Confidence            7777776655  5 8899887 7887655554   4455678999999877654       2     34444 6666667


Q ss_pred             CHHHHHHHHHHHHHcCCC
Q 021356          270 DGRATNVALGWSVALGSP  287 (313)
Q Consensus       270 ~~ea~e~a~~L~~alG~~  287 (313)
                      +++..+.++.+++.+|..
T Consensus       131 ~~~~~~~~~~l~~~~g~~  148 (263)
T 1yqg_A          131 SETDRRIADRIMKSVGLT  148 (263)
T ss_dssp             CHHHHHHHHHHHHTTEEE
T ss_pred             CHHHHHHHHHHHHhCCCE
Confidence            789999999999999954

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.56  E-value=1.5e-15  Score=144.97  Aligned_cols=154  Identities=11%  Similarity=0.076  Sum_probs=108.9

Q ss_pred             ccc-hhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           87 ANR-DEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        87 ~~~-~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      ..| ++. +++|+|.......+|.| ++|||||+|.||+++|+.|+.+      |++|+++++..... +.. ...+.  
T Consensus       114 ~~~~~~~-~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~--  181 (324)
T 3evt_A          114 HAAWLNQ-RGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA--  181 (324)
T ss_dssp             HHHHHHH-TTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE--
T ss_pred             hHHHHHH-HhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc--
Confidence            334 666 89999975535689999 9999999999999999999999      99987666553321 111 01111  


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC  236 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vh  236 (313)
                         ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-.      ...+++ +.......+|...+
T Consensus       182 ---~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~E  257 (324)
T 3evt_A          182 ---FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDH-HQLSMAALDVTEPE  257 (324)
T ss_dssp             ---GGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHT-TSCSEEEESSCSSS
T ss_pred             ---cCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHh-CCceEEEeCCCCCC
Confidence               3478899999999999999887765 664 8899999999999876 321      223332 22222356777788


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      |..+.+.   |+.        --|.++|||-
T Consensus       258 Pl~~~~p---L~~--------~~nvilTPHi  277 (324)
T 3evt_A          258 PLPTDHP---LWQ--------RDDVLITPHI  277 (324)
T ss_dssp             SCCTTCG---GGG--------CSSEEECCSC
T ss_pred             CCCCCCh---hhc--------CCCEEEcCcc
Confidence            8544433   343        2589999985

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.56  E-value=2.4e-14  Score=127.98  Aligned_cols=173  Identities=14%  Similarity=0.073  Sum_probs=111.2

Q ss_pred             hhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCH
Q 021356           94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDI  172 (313)
Q Consensus        94 v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~  172 (313)
                      +-+|-|.++.-+.-..- ++|+|||+|+||.++|+.|.+.      |++|++..+++++. .+.+.+.|...    ..+.
T Consensus         7 ~~~~~~~~~~~~~~m~m-mkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~   75 (220)
T 4huj_A            7 HSSGVDLGTENLYFQSM-TTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVE   75 (220)
T ss_dssp             ----------CTTGGGS-CCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECC
T ss_pred             ccccccccccchhhhcC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccCh
Confidence            55677766532122223 8999999999999999999998      99887734444443 34455556542    2355


Q ss_pred             HhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec-Cc--------------hhhhhhhcccCCCCCccEEEecc
Q 021356          173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF--------------LLGHLQSIGLDFPKNIGVIAVCP  237 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv--------------~l~~~~~~~~~l~~~i~vV~vhP  237 (313)
                      .+.++++|+|++++|++...++++++.+ + ++++|++++ |+              ....+++   .+| +..+++.+|
T Consensus        76 ~~~~~~aDvVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~  149 (220)
T 4huj_A           76 LKDALQADVVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFN  149 (220)
T ss_dssp             HHHHTTSSEEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESC
T ss_pred             HHHHhcCCEEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCC
Confidence            5678999999999999999999988776 5 578888755 55              3445544   445 568999999


Q ss_pred             CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcee
Q 021356          238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF  290 (313)
Q Consensus       238 n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~  290 (313)
                      +.+....    ..|....+.+ ..++....  ++++.+.+.++++.+|..-+.
T Consensus       150 ~~~~~v~----~~g~~~~~~~-~~v~~~g~--~~~~~~~v~~l~~~~G~~~~~  195 (220)
T 4huj_A          150 TLPAAVL----AADPDKGTGS-RVLFLSGN--HSDANRQVAELISSLGFAPVD  195 (220)
T ss_dssp             SSCHHHH----TSCSBCSSCE-EEEEEEES--CHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHh----hhCcccCCCC-eeEEEeCC--CHHHHHHHHHHHHHhCCCeEe
Confidence            9987763    1122222222 23233333  378999999999999965443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.55  E-value=5.4e-15  Score=143.01  Aligned_cols=170  Identities=15%  Similarity=0.023  Sum_probs=117.0

Q ss_pred             ccccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHC
Q 021356           85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAA  160 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~  160 (313)
                      ++..+++. +++|+|.+.   ....+|.| ++|||||+|.||.++|+.|+.+      |++ |++.++. ....+.+.+.
T Consensus       137 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~-~~~~~~~~~~  207 (364)
T 2j6i_A          137 NFVPAHEQ-IINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQ-ALPKDAEEKV  207 (364)
T ss_dssp             THHHHHHH-HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSS-CCCHHHHHHT
T ss_pred             ChHHHHHH-HHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCC-ccchhHHHhc
Confidence            35566767 899999642   23479999 9999999999999999999999      996 7665544 3334556677


Q ss_pred             CceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhcccCCCCCcc
Q 021356          161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFPKNIG  231 (313)
Q Consensus       161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~~l~~~i~  231 (313)
                      |+..    ..++++++++||+|++|+|++..++ +++ +.++.||+|++|++++--.       ...+++ +......++
T Consensus       208 g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~-g~i~gA~LD  282 (364)
T 2j6i_A          208 GARR----VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALES-GQLRGYGGD  282 (364)
T ss_dssp             TEEE----CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEES
T ss_pred             CcEe----cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHc-CCCcEEEEe
Confidence            8763    3489999999999999999987654 775 7889999999999876321       122322 222223467


Q ss_pred             EEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHH
Q 021356          232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRAT  274 (313)
Q Consensus       232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~  274 (313)
                      |+..+|..+.+..   +.....   .+.|.++|||- ..+.++.
T Consensus       283 Vf~~EP~~~~~pL---~~~~~~---~~~nvilTPHia~~t~e~~  320 (364)
T 2j6i_A          283 VWFPQPAPKDHPW---RDMRNK---YGAGNAMTPHYSGTTLDAQ  320 (364)
T ss_dssp             CCSSSSCCTTCHH---HHCCCT---TSCCEEECCSCGGGSHHHH
T ss_pred             cCCCCCCCCCChH---HhccCC---ccCcEEECCccCcCCHHHH
Confidence            7777886544443   221000   01179999986 3334444

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.55  E-value=5e-15  Score=145.95  Aligned_cols=167  Identities=17%  Similarity=0.129  Sum_probs=111.1

Q ss_pred             ccccchhhhhhcCCCcccc-cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           85 SLANRDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~-~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      ++..+++. +++|+|.... ...+|.| ++|||||+|.||+++|+.++++      |++|+++++.....     ..+..
T Consensus       131 ~i~~~~~~-~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~  197 (416)
T 3k5p_A          131 RIFPRSVS-AHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVK  197 (416)
T ss_dssp             THHHHHHH-HHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBE
T ss_pred             ccHHHHHh-hhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcE
Confidence            35556767 8999996543 3579999 9999999999999999999999      99986665542211     11232


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~  234 (313)
                      .    ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-.      ...+++ +......++|+.
T Consensus       198 ~----~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~-g~i~gAalDVf~  272 (416)
T 3k5p_A          198 P----AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE-GHLAGAAIDVFP  272 (416)
T ss_dssp             E----CSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT-TSEEEEEECCCS
T ss_pred             e----cCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCccEEEeCCCC
Confidence            2    4589999999999999999998776 664 7899999999999876 421      122322 222223466667


Q ss_pred             eccCCCchhH-HHHHHhcccccCCCceEEEEec-cCCCHHHHHHH
Q 021356          235 VCPKGMGPSV-RRLYVQGKEINGAGINSSFAVH-QDVDGRATNVA  277 (313)
Q Consensus       235 vhPn~pg~~~-r~lf~~G~e~~g~G~~~iitp~-~d~~~ea~e~a  277 (313)
                      .+|..+.... ..|+.        --|.++||| ...+.++.+.+
T Consensus       273 ~EP~~~~~~~~~pL~~--------~~nvilTPHig~~T~ea~~~~  309 (416)
T 3k5p_A          273 VEPASNGERFSTPLQG--------LENVILTPHIGGSTEEAQERI  309 (416)
T ss_dssp             SCCSSTTSCCCCTTTT--------CTTEEECCSCTTCCHHHHHHH
T ss_pred             CCCCCcccccchhHhc--------CCCEEECCCCCCCCHHHHHHH
Confidence            7775543211 11222        258999999 45666655543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.55  E-value=1.5e-14  Score=132.53  Aligned_cols=130  Identities=13%  Similarity=0.026  Sum_probs=101.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |+|+|||+|+||.++|++|++.      |++|+..++.                       ++ +++||  ||++|++.+
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai   54 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV   54 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred             cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence            8999999999999999999999      9986543331                       12 56899  999999999


Q ss_pred             HHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021356          192 ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD  270 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~G-v~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~  270 (313)
                      .++++++.+++++|++|+|++| ++...++.   ..+.+..||+.||.           +       |..+.++..   +
T Consensus        55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm-----------~-------g~~~~i~a~---d  110 (232)
T 3dfu_A           55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPI-----------G-------QDRWVASAL---D  110 (232)
T ss_dssp             HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEE-----------E-------TTEEEEEES---S
T ss_pred             HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeC-----------C-------CCceeeeCC---C
Confidence            9999999999999999999765 44433432   11346789999993           1       345656654   5


Q ss_pred             HHHHHHHHHHHHHcCCCceeecChhHHH
Q 021356          271 GRATNVALGWSVALGSPFTFATTLEQEY  298 (313)
Q Consensus       271 ~ea~e~a~~L~~alG~~~~~~tT~~~e~  298 (313)
                      +++++.++.|++.|| .+++.++.++|-
T Consensus       111 ~~a~~~l~~L~~~lG-~~vv~~~~~~hd  137 (232)
T 3dfu_A          111 ELGETIVGLLVGELG-GSIVEIADDKRA  137 (232)
T ss_dssp             HHHHHHHHHHHHHTT-CEECCCCGGGHH
T ss_pred             HHHHHHHHHHHHHhC-CEEEEeCHHHHh
Confidence            789999999999999 567788887764

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.55  E-value=6.8e-15  Score=144.32  Aligned_cols=164  Identities=18%  Similarity=0.117  Sum_probs=105.8

Q ss_pred             ccccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-c
Q 021356           85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-F  162 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~  162 (313)
                      ++..+++. +++|+|... +...+|.| |+|||||+|.||..+|+.++++      |++|+++++.....      .| +
T Consensus       120 ~i~~~~~~-~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~------~~~~  185 (404)
T 1sc6_A          120 GVPEANAK-AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP------LGNA  185 (404)
T ss_dssp             THHHHHHH-HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC------CTTC
T ss_pred             ChHHHHHH-HHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc------cCCc
Confidence            35566777 899999653 23479999 9999999999999999999999      99986665543221      23 3


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhcccCCCCCccEE
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~~l~~~i~vV  233 (313)
                      ..    ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++--.       ...+++ +......++|+
T Consensus       186 ~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gA~lDVf  260 (404)
T 1sc6_A          186 TQ----VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVF  260 (404)
T ss_dssp             EE----CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC-
T ss_pred             ee----cCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHc-CCccEEEEeec
Confidence            31    3489999999999999999997654 774 7889999999999876321       122222 11112246788


Q ss_pred             EeccCCCchh-HHHHHHhcccccCCCceEEEEeccC-CCHHHHH
Q 021356          234 AVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD-VDGRATN  275 (313)
Q Consensus       234 ~vhPn~pg~~-~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e  275 (313)
                      ..+|..+... ...|+.        --|.++|||-- .+.++.+
T Consensus       261 ~~EP~~~~~~~~~pL~~--------~~nvilTPHi~~~T~ea~~  296 (404)
T 1sc6_A          261 PTEPATNSDPFTSPLAE--------FDNVLLTPHIGGSTQEAQE  296 (404)
T ss_dssp             --------CTTTGGGTT--------CTTEEEECCCSCCSHHHHH
T ss_pred             CCCCCCccccccchhhc--------CCCEEECCCCCCCcHHHHH
Confidence            8898543211 112333        25899999863 4455544

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.54  E-value=1.6e-15  Score=144.98  Aligned_cols=155  Identities=18%  Similarity=0.150  Sum_probs=110.3

Q ss_pred             ccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      ++..|++. +++|+|... ...+|.| ++|||||+|.||+++|+.|+.+      |++|+++++..... ...  .+.. 
T Consensus       117 ~~~~~~~~-~~~g~W~~~-~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~-  183 (324)
T 3hg7_A          117 QLPLYREQ-QKQRLWQSH-PYQGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVY-  183 (324)
T ss_dssp             THHHHHHH-HHTTCCCCC-CCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEE-
T ss_pred             ChHHHHHH-HhhCCCcCC-CCccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hccc-
Confidence            45667777 899999754 4479999 9999999999999999999999      99987665543221 110  1111 


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v  235 (313)
                         ...+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-.      ...+++ +......++|+..
T Consensus       184 ---~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~  259 (324)
T 3hg7_A          184 ---QLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRT-GKLGMAVLDVFEQ  259 (324)
T ss_dssp             ---CGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHT-TSSSEEEESCCSS
T ss_pred             ---ccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHc-CCceEEEeccCCC
Confidence               13588999999999999999887655 665 7889999999999876 321      123332 2222335777788


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +|..+.+.   ++.        --|.++|||-
T Consensus       260 EPl~~~~p---L~~--------~~nvilTPHi  280 (324)
T 3hg7_A          260 EPLPADSP---LWG--------QPNLIITPHN  280 (324)
T ss_dssp             SSCCTTCT---TTT--------CTTEEECCSC
T ss_pred             CCCCCCCh---hhc--------CCCEEEeCCC
Confidence            88544433   332        2589999985

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.54  E-value=1.5e-15  Score=144.40  Aligned_cols=155  Identities=13%  Similarity=0.098  Sum_probs=110.5

Q ss_pred             ccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      ++..|++. +++|+|... +..+|.| ++|||||+|.||+++|+.++.+      |++|+++.+.....      .++..
T Consensus       116 ~~~~~~~~-~~~g~W~~~-~~~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~  180 (315)
T 3pp8_A          116 RFDDYQAL-KNQALWKPL-PEYTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVES  180 (315)
T ss_dssp             THHHHHHH-HHTTCCCCC-CCCCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEE
T ss_pred             CChHHHHH-HHhcccCCC-CCCCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhh
Confidence            35567777 899999765 4589999 9999999999999999999999      99987666553321      22321


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HH-HHHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi-~ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v  235 (313)
                      . ....+++|++++||+|++|+|.+..++ ++ .+.++.||+|++|++++ |-.      +..+++ +......++|...
T Consensus       181 ~-~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~  258 (315)
T 3pp8_A          181 Y-VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDS-GKLKGAMLDVFSQ  258 (315)
T ss_dssp             E-ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCSS
T ss_pred             h-cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHh-CCccEEEcCCCCC
Confidence            0 011378899999999999999887665 77 48899999999999876 321      223332 2222335677778


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +|..+.+.   ++.        --|.++|||-
T Consensus       259 EPl~~~~p---L~~--------~~nvilTPHi  279 (315)
T 3pp8_A          259 EPLPQESP---LWR--------HPRVAMTPHI  279 (315)
T ss_dssp             SSCCTTCG---GGG--------CTTEEECSSC
T ss_pred             CCCCCCCh---hhc--------CCCEEECCCC
Confidence            88544433   333        2588999985

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.54  E-value=2.3e-13  Score=126.52  Aligned_cols=153  Identities=15%  Similarity=0.155  Sum_probs=112.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC-------------
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-------------  166 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-------------  166 (313)
                      |++|+|||+|.||.++|..|.+.      |++|++.++. ++..+.+           .+.|...+.             
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~   87 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQT-EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST   87 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence            48999999999999999999998      9988766554 3333322           123421100             


Q ss_pred             -CCcCCHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 021356          167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP  242 (313)
Q Consensus       167 -~~~~~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~  242 (313)
                       ....++++++++||+||+++|++..  ..+++++.+.++++++|+ .++|+.+..+..   .++..-++++.||+.|..
T Consensus        88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~  164 (302)
T 1f0y_A           88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP  164 (302)
T ss_dssp             EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred             eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence             0134777789999999999998763  357889989999999887 567776665544   333345799999988765


Q ss_pred             hHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .              +....+++..+.+++..+.+..+++.+|..
T Consensus       165 ~--------------~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~  195 (302)
T 1f0y_A          165 V--------------MKLVEVIKTPMTSQKTFESLVDFSKALGKH  195 (302)
T ss_dssp             T--------------CCEEEEECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred             c--------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence            4              234557788888999999999999999953

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.53  E-value=1.2e-14  Score=139.15  Aligned_cols=161  Identities=20%  Similarity=0.255  Sum_probs=111.5

Q ss_pred             ccccchhhhhhcCCCcccc--cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           85 SLANRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~--~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      ++..+++. +|+|+|....  ...+|.| ++|||||+|.||.++|+.++++      |++|++.++.....      .|+
T Consensus       138 ~~~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~  203 (333)
T 3ba1_A          138 RICECDKY-VRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNY  203 (333)
T ss_dssp             THHHHHHH-HHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCS
T ss_pred             CHHHHHHH-HHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCc
Confidence            35556777 8999996421  2469999 9999999999999999999999      99987666543221      255


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhH-HHHH-HHHHhcCCCCcEEEEecCch-h------hhhhhcccCCCCCccEE
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFL-L------GHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~-~~vi-~ei~~~mk~gaiLid~~Gv~-l------~~~~~~~~~l~~~i~vV  233 (313)
                      ..    ..++++++++||+|++++|++.. ..++ ++.++.||+|++|++++... +      ..+++ +......++|+
T Consensus       204 ~~----~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~-g~i~ga~lDv~  278 (333)
T 3ba1_A          204 TY----YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVE-GRLGGAGLDVF  278 (333)
T ss_dssp             EE----ESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHH-TSSCEEEESCC
T ss_pred             ee----cCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHc-CCCeEEEEecC
Confidence            42    45889999999999999999865 4577 47888999999999876432 1      12222 11111246777


Q ss_pred             EeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHH
Q 021356          234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV  276 (313)
Q Consensus       234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~  276 (313)
                      ..||. +.   ..++.        ..|+++|||-. .+.++.+.
T Consensus       279 ~~EP~-~~---~~L~~--------~~nviltPH~~~~t~e~~~~  310 (333)
T 3ba1_A          279 EREPE-VP---EKLFG--------LENVVLLPHVGSGTVETRKV  310 (333)
T ss_dssp             TTTTC-CC---GGGGG--------CTTEEECSSCTTCSHHHHHH
T ss_pred             CCCCC-Cc---chhhc--------CCCEEECCcCCCCCHHHHHH
Confidence            78884 22   23554        36899999863 34444433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.53  E-value=4.1e-14  Score=132.95  Aligned_cols=149  Identities=13%  Similarity=0.053  Sum_probs=105.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      +++|||||+|.||.++|++|.+.      |+ +|+++++. +++..+.+.+.|+..    ..++.|++++||+||+++|+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~   93 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTA   93 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCc
Confidence            38999999999999999999999      99 87766664 245566677788764    56889999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCC-CC--CccEEEeccC-CCchhHHHHHHhcccccCCCceEEEE
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PK--NIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~--~i~vV~vhPn-~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      ....++++++.+.++++++|+|++++...........+ ..  ++.|+.. |- ++...     ..       |...+++
T Consensus        94 ~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~-pv~g~~~~-----~~-------g~l~i~v  160 (312)
T 3qsg_A           94 QAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV-AVMSAVKP-----HG-------HRVPLVV  160 (312)
T ss_dssp             TTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE-EECSCSTT-----TG-------GGSEEEE
T ss_pred             hhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec-cccCCchh-----hc-------CCEEEEe
Confidence            99999999999999999999998877431111000011 11  4666652 31 11111     01       2345455


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCC
Q 021356          265 VHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ...+.     +.++.+++.+|..
T Consensus       161 gg~~~-----~~~~~ll~~~g~~  178 (312)
T 3qsg_A          161 DGDGA-----RRFQAAFTLYGCR  178 (312)
T ss_dssp             ESTTH-----HHHHHHHHTTTCE
T ss_pred             cCChH-----HHHHHHHHHhCCC
Confidence            55432     7888999999953

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.52  E-value=9.7e-15  Score=140.53  Aligned_cols=166  Identities=17%  Similarity=0.093  Sum_probs=113.8

Q ss_pred             ccccchhhhhhcCCCcccc--------cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH
Q 021356           85 SLANRDEFIVRGGRDLFKL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE  156 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~~--------~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~  156 (313)
                      ++..|++. +|+|+|....        ...+|.| ++|||||+|.||.++|+.|+++      |++|+++++...+.  .
T Consensus       136 ~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~~--~  205 (347)
T 1mx3_A          136 RATWLHQA-LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--V  205 (347)
T ss_dssp             CHHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--H
T ss_pred             hHHHHHHH-HHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcchh--h
Confidence            45566766 8999994321        2368999 9999999999999999999999      99987666543332  3


Q ss_pred             HHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH-HHH-HHHHhcCCCCcEEEEecCch-------hhhhhhcccCCC
Q 021356          157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFP  227 (313)
Q Consensus       157 A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi-~ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~~l~  227 (313)
                      +.+.|+..    ..+++|++++||+|++++|++..+ .++ ++.++.||+|++|++++...       ...+++ +....
T Consensus       206 ~~~~g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~-g~i~g  280 (347)
T 1mx3_A          206 ERALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE-GRIRG  280 (347)
T ss_dssp             HHHHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEE
T ss_pred             HhhcCCee----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHh-CCCcE
Confidence            34556642    348899999999999999998654 477 47889999999999876432       122222 11112


Q ss_pred             CCccEEEeccCCC-chhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHH
Q 021356          228 KNIGVIAVCPKGM-GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV  276 (313)
Q Consensus       228 ~~i~vV~vhPn~p-g~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~  276 (313)
                      ...+|+..+|... ...   ++.        -.|++++||-. .+.+..+.
T Consensus       281 A~lDV~~~EP~~~~~~~---L~~--------~~nvi~tPHia~~t~~~~~~  320 (347)
T 1mx3_A          281 AALDVHESEPFSFSQGP---LKD--------APNLICTPHAAWYSEQASIE  320 (347)
T ss_dssp             EEESCCSSSSCCTTSST---TTT--------CSSEEECSSCTTCCHHHHHH
T ss_pred             EEEeecccCCCCCCCch---HHh--------CCCEEEEchHHHHHHHHHHH
Confidence            3467788888431 121   222        36899999864 34444433

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.52  E-value=1.6e-14  Score=139.01  Aligned_cols=166  Identities=17%  Similarity=0.073  Sum_probs=113.8

Q ss_pred             ccccchhhhhh-cCCCcc--cccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           85 SLANRDEFIVR-GGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        85 ~~~~~~e~~v~-~G~w~f--~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      ++..|++. +| +|+|.+  .....+|.| ++|||||+|.||+++|+.++.+      |++|+++++....    ..+.+
T Consensus       121 ~~~~~~~~-~~~~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~  188 (343)
T 2yq5_A          121 KIGEFRYR-MDHDHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPF  188 (343)
T ss_dssp             THHHHHHH-HHHHCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTT
T ss_pred             chHHHHHH-HHHcCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcc
Confidence            35556766 78 887654  345689999 9999999999999999999999      9998766655332    12233


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~v  232 (313)
                      +.     ..+++|++++||+|++|+|.+..+. +++ +.++.||+|++|++++ |-.      ...+++ +......++|
T Consensus       189 ~~-----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~i~gA~LDV  262 (343)
T 2yq5_A          189 LT-----YTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD-GEIAGAGLDT  262 (343)
T ss_dssp             CE-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSCEEESC
T ss_pred             cc-----ccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCCcEEEecc
Confidence            33     3489999999999999999887655 665 7889999999999876 321      223332 2233346777


Q ss_pred             EEeccCC-C-c-------hh-HHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021356          233 IAVCPKG-M-G-------PS-VRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV  276 (313)
Q Consensus       233 V~vhPn~-p-g-------~~-~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~  276 (313)
                      ...+|.. | .       +. ...|+.        --|.++|||- ..+.++.+.
T Consensus       263 ~~~EP~~~~~~~~~~~~l~~~~~pL~~--------~~nvilTPHia~~t~ea~~~  309 (343)
T 2yq5_A          263 LAGESSYFGHTGLTDSEIPEDYKTLAK--------MPNVVITPHSAFYTETSIRN  309 (343)
T ss_dssp             CTTGGGTTTCCSCCTTTSCHHHHHHTT--------CTTEEECSSCTTCBHHHHHH
T ss_pred             cccCCCccccccccccccccchhHHhc--------CCCEEECCccccchHHHHHH
Confidence            7777721 1 1       00 123444        2589999986 344555443

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.52  E-value=2.1e-14  Score=136.89  Aligned_cols=162  Identities=20%  Similarity=0.216  Sum_probs=111.0

Q ss_pred             cccchhhhhhcCCCc-----cc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH
Q 021356           86 LANRDEFIVRGGRDL-----FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA  157 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~-----f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A  157 (313)
                      +..+++. +|+|+|.     +.   ....+|.| ++|||||+|.||.++|+.++.+      |++|++.++....  +.+
T Consensus       119 ~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~  188 (334)
T 2dbq_A          119 VVKGDRF-VRSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVE  188 (334)
T ss_dssp             HHHHHHH-HHTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHH
T ss_pred             HHHHHHH-HHcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhH
Confidence            5556766 8999995     21   12468999 9999999999999999999999      9998666554333  445


Q ss_pred             HHCCceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCc-hh------hhhhhcccCCCC
Q 021356          158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGF-LL------GHLQSIGLDFPK  228 (313)
Q Consensus       158 ~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv-~l------~~~~~~~~~l~~  228 (313)
                      .+.|+.     ..++++++++||+|++++|++..+ .++. ++++.||+|++|++++-. .+      ..+.. +.....
T Consensus       189 ~~~g~~-----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~-~~i~ga  262 (334)
T 2dbq_A          189 RELNAE-----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKE-GWIAGA  262 (334)
T ss_dssp             HHHCCE-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEE
T ss_pred             hhcCcc-----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEE
Confidence            556665     348889999999999999999854 5774 788999999999986532 22      12222 111112


Q ss_pred             CccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHH
Q 021356          229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN  275 (313)
Q Consensus       229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e  275 (313)
                      ..+|...+|    +....++.        ..|+++|||.. .+.++.+
T Consensus       263 ~lDv~~~EP----~~~~~L~~--------~~~vi~tPh~~~~t~~~~~  298 (334)
T 2dbq_A          263 GLDVFEEEP----YYNEELFK--------LDNVVLTPHIGSASFGARE  298 (334)
T ss_dssp             EESCCSSSS----CCCHHHHH--------CTTEEECSSCTTCSHHHHH
T ss_pred             EecCCCCCC----CCCchhhc--------CCCEEECCccCCCcHHHHH
Confidence            345555555    22345666        36899999863 3444333

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.50  E-value=4.9e-13  Score=133.29  Aligned_cols=156  Identities=14%  Similarity=0.178  Sum_probs=115.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-------cHHHHHHCCceecC---------CCcCCHH
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEARAAGFTEEN---------GTLGDIY  173 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-------s~~~A~~~G~~~~~---------~~~~~~~  173 (313)
                      -|++|+|||+|.||.++|+.+.+.      |++|++.++..++       ..+.+.+.|...+.         ....++ 
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-  125 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-  125 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-
Confidence            358999999999999999999999      9998776655331       12234455542100         012355 


Q ss_pred             hhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHh
Q 021356          174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ  250 (313)
Q Consensus       174 e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~  250 (313)
                      +.+++||+||+++|.+...  +++.++.+.+++++||+ .++++.+..+.+   .++...+|++.||..|...+      
T Consensus       126 ~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~~~~p~r~iG~HffnPv~~m------  196 (460)
T 3k6j_A          126 HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---VLRDPSNLVGIHFFNPANVI------  196 (460)
T ss_dssp             GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---TSSSGGGEEEEECCSSTTTC------
T ss_pred             HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---hccCCcceEEEEecchhhhC------
Confidence            4789999999999987543  48889999999999997 566777766654   33444689999998877642      


Q ss_pred             cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                              ...-+++...++++.++.+..+++.+|..-+
T Consensus       197 --------~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v  227 (460)
T 3k6j_A          197 --------RLVEIIYGSHTSSQAIATAFQACESIKKLPV  227 (460)
T ss_dssp             --------CEEEEECCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             --------CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEE
Confidence                    3455788888999999999999999996543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.50  E-value=4.6e-14  Score=135.45  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=90.6

Q ss_pred             ccccchhhhhhcCC---Ccc-c----ccccccCCCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHH
Q 021356           85 SLANRDEFIVRGGR---DLF-K----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFA  155 (313)
Q Consensus        85 ~~~~~~e~~v~~G~---w~f-~----~~~~~l~GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~  155 (313)
                      ++..+++. +|+|+   |.. .    ....+|.| ++|||||+|.||.++|+.++ .+      |++|++.++. ....+
T Consensus       131 ~~~~~~~~-~~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~-~~~~~  201 (348)
T 2w2k_A          131 LASYSERA-ARTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVA-PADAE  201 (348)
T ss_dssp             THHHHHHH-HTTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSS-CCCHH
T ss_pred             ChHHHHHH-HHcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCC-Ccchh
Confidence            35567777 89999   931 1    23478999 99999999999999999999 88      9987655544 33344


Q ss_pred             HHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHH-HHHhcCCCCcEEEEecCc
Q 021356          156 EARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       156 ~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                      .+.+.|+..    ..++++++++||+|++|+|++..+ .++. ++++.||+|++|++++..
T Consensus       202 ~~~~~g~~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg  258 (348)
T 2w2k_A          202 TEKALGAER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARG  258 (348)
T ss_dssp             HHHHHTCEE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred             hHhhcCcEE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            455557653    347889999999999999998754 4664 788899999999987654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.48  E-value=1.1e-13  Score=131.54  Aligned_cols=158  Identities=20%  Similarity=0.110  Sum_probs=109.6

Q ss_pred             ccccchhhhhhcCCCcc-c---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356           85 SLANRDEFIVRGGRDLF-K---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f-~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      ++..+++. +|+|+|.. .   ....+|.| ++|||||+|.||.++|+.++.+      |++|++.++.. ...+.+.+.
T Consensus       127 ~~~~~~~~-~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~-~~~~~~~~~  197 (330)
T 2gcg_A          127 RLPEAIEE-VKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQ-PRPEEAAEF  197 (330)
T ss_dssp             THHHHHHH-HHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSS-CCHHHHHTT
T ss_pred             CHHHHHHH-HHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCC-cchhHHHhc
Confidence            35556767 89999953 2   12378999 9999999999999999999999      99987666543 334445556


Q ss_pred             CceecCCCcCCHHhhhccCCEEEEcccchhHH-HHH-HHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCcc
Q 021356          161 GFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIG  231 (313)
Q Consensus       161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi-~ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~  231 (313)
                      |+..     .++++++++||+|++++|++..+ .++ +++++.||+|++|++++...+       ..+.+ +.......+
T Consensus       198 g~~~-----~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~-~~i~ga~lD  271 (330)
T 2gcg_A          198 QAEF-----VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS-GKIAAAGLD  271 (330)
T ss_dssp             TCEE-----CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEES
T ss_pred             Ccee-----CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHc-CCccEEEeC
Confidence            7653     28889999999999999998764 466 478889999999998764321       12222 111112356


Q ss_pred             EEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      |+..+|..+.+.   ++.        ..|.+++||-.
T Consensus       272 v~~~epl~~~~~---l~~--------~~nvi~tPh~~  297 (330)
T 2gcg_A          272 VTSPEPLPTNHP---LLT--------LKNCVILPHIG  297 (330)
T ss_dssp             CCSSSSCCTTCG---GGG--------CTTEEECCSCT
T ss_pred             CCCCCCCCCCCh---hhc--------CCCEEECCCCC
Confidence            666666433332   343        25888999863

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.48  E-value=5.9e-14  Score=133.99  Aligned_cols=162  Identities=17%  Similarity=0.154  Sum_probs=108.7

Q ss_pred             ccccchhhhhhcCCCcc----cc---cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH
Q 021356           85 SLANRDEFIVRGGRDLF----KL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA  157 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f----~~---~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A  157 (313)
                      ++..+++. +|+|+|..    ..   ++.+|.| ++|||||+|.||.++|+.++++      |++|++.++... . +.+
T Consensus       115 ~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~-~-~~~  184 (333)
T 2d0i_A          115 KIHYADKF-IRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRK-V-NVE  184 (333)
T ss_dssp             CHHHHHHH-HHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCC-H-HHH
T ss_pred             HHHHHHHH-HHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc-h-hhh
Confidence            35566777 89999952    11   1279999 9999999999999999999999      999866555433 2 445


Q ss_pred             HHCCceecCCCcCCHHhhhccCCEEEEcccchhH-HHHHH-HHHhcCCCCcEEEEecC-chh------hhhhhcccCCCC
Q 021356          158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHG-FLL------GHLQSIGLDFPK  228 (313)
Q Consensus       158 ~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~-~~vi~-ei~~~mk~gaiLid~~G-v~l------~~~~~~~~~l~~  228 (313)
                      .+.|+.     ..++++++++||+|++|+|++.. ..+++ ++++.||+| +|++++- ..+      ..+.. +.....
T Consensus       185 ~~~g~~-----~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~-~~i~ga  257 (333)
T 2d0i_A          185 KELKAR-----YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQ-GKLKGY  257 (333)
T ss_dssp             HHHTEE-----ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHT-TCBCEE
T ss_pred             hhcCce-----ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHc-CCceEE
Confidence            556765     23788999999999999999954 45775 678899999 9998763 222      11111 111112


Q ss_pred             CccEEEeccCCCchhHHHHHHhcccccCCCc-eEEEEecc-CCCHHHHH
Q 021356          229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGI-NSSFAVHQ-DVDGRATN  275 (313)
Q Consensus       229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~-~~iitp~~-d~~~ea~e  275 (313)
                      ..+|...+|.. .   ..+|.        .. |+++|||. ..+.++.+
T Consensus       258 glDv~~~EP~~-~---~~L~~--------~~~nviltPh~~~~t~~~~~  294 (333)
T 2d0i_A          258 ATDVFEKEPVR-E---HELFK--------YEWETVLTPHYAGLALEAQE  294 (333)
T ss_dssp             EESCCSSSSCS-C---CGGGG--------CTTTEEECCSCTTCCHHHHH
T ss_pred             EecCCCCCCCC-C---chHHc--------CCCCEEEcCccCCCcHHHHH
Confidence            34444455622 2   23454        36 89999986 33455443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.48  E-value=5.2e-13  Score=125.83  Aligned_cols=144  Identities=13%  Similarity=0.097  Sum_probs=109.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |+|||||+|.||.++|+++. .      |++|++.++. ++..+.+.+.       ++..    ..++++ +++||+||.
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~-~~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVS-EKALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME   79 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred             CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECC-HHHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence            99999999999999999999 9      9998666554 4455555554       4432    335655 899999999


Q ss_pred             cccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceE
Q 021356          185 LISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS  261 (313)
Q Consensus       185 avP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~  261 (313)
                      ++|.....+  ++.++.+.  |+++|+ +++++.+..+..   ......++++.||--|...              +...
T Consensus        80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv  140 (293)
T 1zej_A           80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV  140 (293)
T ss_dssp             CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred             cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence            999988643  66676554  999986 677777765543   2233357999999666543              3467


Q ss_pred             EEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          262 SFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       262 iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .+++...++++.++.++.+++.+|..
T Consensus       141 eiv~g~~t~~~~~~~~~~l~~~lGk~  166 (293)
T 1zej_A          141 EIVISRFTDSKTVAFVEGFLRELGKE  166 (293)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred             EEECCCCCCHHHHHHHHHHHHHcCCe
Confidence            78888889999999999999999954

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.47  E-value=1.1e-13  Score=132.01  Aligned_cols=166  Identities=14%  Similarity=0.041  Sum_probs=112.0

Q ss_pred             ccccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      ++..|++. +|+|+|... ....+|.| ++|||||+|.||+++|+.++.+      |++|++.++...+.   +.+ ++.
T Consensus       121 ~~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~  188 (333)
T 1j4a_A          121 QDKAMDEK-VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGY  188 (333)
T ss_dssp             THHHHHHH-HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTC
T ss_pred             CHHHHHHH-HHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCe
Confidence            35667777 899999542 34579999 9999999999999999999999      99986665543322   222 222


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~~l~~~i~vV~  234 (313)
                          ...++++++++||+|++++|.+..++ +++ +.++.||+|++|++++--.       ...+++ +......++|+.
T Consensus       189 ----~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~gA~LDV~~  263 (333)
T 1j4a_A          189 ----YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS-GKIFGYAMDVYE  263 (333)
T ss_dssp             ----BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCT
T ss_pred             ----ecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCceEEEEecCC
Confidence                12378999999999999999987654 674 7889999999999876321       122222 222223567777


Q ss_pred             eccC--CCc--------hhHHHHHHhcccccCCCceEEEEeccC-CCHHHHH
Q 021356          235 VCPK--GMG--------PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN  275 (313)
Q Consensus       235 vhPn--~pg--------~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e  275 (313)
                      .+|.  .+.        +....|+..        -|.++|||-- .+.++.+
T Consensus       264 ~EP~~l~~~~~~~~~~~p~~~~L~~~--------~nvilTPHia~~t~~~~~  307 (333)
T 1j4a_A          264 GEVGIFNEDWEGKEFPDARLADLIAR--------PNVLVTPKTAFYTTHAVR  307 (333)
T ss_dssp             TCTTTTTSBCTTSCCSCHHHHHHHHC--------TTEEECSSCTTCBHHHHH
T ss_pred             CCCCccccccccccCCccchhhHHhC--------CCEEECCccccCHHHHHH
Confidence            7873  111        111235552        4899999863 3444433

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.46  E-value=8.9e-14  Score=132.63  Aligned_cols=168  Identities=14%  Similarity=0.025  Sum_probs=113.2

Q ss_pred             ccccchhhhhhcCCCcc--cccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           85 SLANRDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f--~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      ++..+++. +|+|+|..  .....+|.| ++|||||+|.||.++|+.++.+      |++|++.++...+.   + +.++
T Consensus       120 ~~~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~  187 (331)
T 1xdw_A          120 HTAYTTSR-TAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYC  187 (331)
T ss_dssp             THHHHHHH-HTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTC
T ss_pred             CHHHHHHH-HHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhcc
Confidence            35567777 89999864  234578999 9999999999999999999999      99987666543322   1 1222


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhcccCCCCCccEE
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~Gv~-------l~~~~~~~~~l~~~i~vV  233 (313)
                      .     ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++--.       ...+++ +......++|+
T Consensus       188 ~-----~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~-g~i~gA~LDV~  261 (331)
T 1xdw_A          188 T-----QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES-GKLGGYGCDVL  261 (331)
T ss_dssp             E-----ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCC
T ss_pred             c-----cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHh-CCceEEEEecC
Confidence            2     3488999999999999999987654 774 7889999999999876321       122222 22223356777


Q ss_pred             EeccCC-C---------chhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021356          234 AVCPKG-M---------GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA  277 (313)
Q Consensus       234 ~vhPn~-p---------g~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a  277 (313)
                      ..+|.. |         .+....|+..       .-|.++|||-- .+.++.+.+
T Consensus       262 ~~EP~~~~~~~~~~~~~~~~~~~L~~~-------~~nvilTPHia~~t~~~~~~~  309 (331)
T 1xdw_A          262 DGEASVFGKDLEGQKLENPLFEKLVDL-------YPRVLITPHLGSYTDEAVKNM  309 (331)
T ss_dssp             TTGGGTTTCCCTTSCCSSHHHHHHHHT-------TTTEEECCSCTTCSHHHHHHH
T ss_pred             CCCCCcccccccccccCccchHHHHhC-------CCCEEEcCccccChHHHHHHH
Confidence            778731 1         1111235542       13799999873 344544433

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.46  E-value=3.1e-13  Score=124.65  Aligned_cols=151  Identities=19%  Similarity=0.172  Sum_probs=107.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc-hh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~-~a  190 (313)
                      |+|+|||+|.||.++|++|.+.      |++|+++++. ++..+...+.|+..    ..+++|++++||+|++++|+ ..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~   70 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRS-PEKAEELAALGAER----AATPCEVVESCPVTFAMLADPAA   70 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-GGGGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence            7999999999999999999999      9988766554 44455666678764    56899999999999999995 45


Q ss_pred             HHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       191 ~~~vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      ..+++   +++.+.+++|++|++++++.....+.....+ ..++.|+. +|-..+...  . ..       |...+++..
T Consensus        71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a-~~-------g~l~~~~gg  139 (287)
T 3pef_A           71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP--A-ED-------GTLIILAAG  139 (287)
T ss_dssp             HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH--H-HH-------TCEEEEEEE
T ss_pred             HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH--H-hc-------CCEEEEEeC
Confidence            66788   7888999999999999876432211100011 23567777 784433331  1 22       334434433


Q ss_pred             cCCCHHHHHHHHHHHHHcCCC
Q 021356          267 QDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~  287 (313)
                         ++++.+.++.+++.+|.+
T Consensus       140 ---~~~~~~~~~~ll~~~g~~  157 (287)
T 3pef_A          140 ---DRNLYDEAMPGFEKMGKK  157 (287)
T ss_dssp             ---CHHHHHHHHHHHHHHEEE
T ss_pred             ---CHHHHHHHHHHHHHhCCC
Confidence               368999999999999954

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.46  E-value=4.1e-13  Score=125.75  Aligned_cols=156  Identities=15%  Similarity=0.045  Sum_probs=108.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..... ++|+|||+|+||.++|++|.+.      |++|+++++. ++..+...+.|...    ..+++|++++||+||++
T Consensus        17 ~~~~m-~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~~~~~~aDvvi~~   84 (310)
T 3doj_A           17 RGSHM-MEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRT-LSKCDELVEHGASV----CESPAEVIKKCKYTIAM   84 (310)
T ss_dssp             -CCCS-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-GGGGHHHHHTTCEE----CSSHHHHHHHCSEEEEC
T ss_pred             ccccC-CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCeE----cCCHHHHHHhCCEEEEE
Confidence            34444 9999999999999999999999      9988766554 44455566778764    56899999999999999


Q ss_pred             ccchh-HHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          186 ISDAA-QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       186 vP~~a-~~~vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      +|... ..+++   +++.+.+++|++|+|++++.....+.....+ ..++.|+. +|-..+..  ..+.        |..
T Consensus        85 vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~--~a~~--------g~l  153 (310)
T 3doj_A           85 LSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKK--PAED--------GQL  153 (310)
T ss_dssp             CSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH--HHHH--------TCE
T ss_pred             cCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChh--HHhc--------CCe
Confidence            99764 45677   6788999999999999886432211100011 23567776 67332222  1222        344


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .+++.. +  +++.+.++.+++.+|..
T Consensus       154 ~i~~gg-~--~~~~~~~~~ll~~~g~~  177 (310)
T 3doj_A          154 IILAAG-D--KALFEESIPAFDVLGKR  177 (310)
T ss_dssp             EEEEEE-C--HHHHHHHHHHHHHHEEE
T ss_pred             EEEEcC-C--HHHHHHHHHHHHHhCCC
Confidence            444443 3  68999999999999953

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.46  E-value=7e-13  Score=132.64  Aligned_cols=154  Identities=13%  Similarity=0.151  Sum_probs=115.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~  170 (313)
                      +++|+|||+|+||.++|+.+.+.      |++|++.+++ ++..+.+.+           .|...+.         ....
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~   77 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT   77 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence            37999999999999999999999      9988665544 444444332           3432100         0123


Q ss_pred             CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      +. +.+++||+||+++|++..  .+++.++.+.++++++|+ +++++.+..+..   .+....+|++.||..|.+.+   
T Consensus        78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~---  150 (483)
T 3mog_A           78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM---  150 (483)
T ss_dssp             CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred             CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence            45 468999999999999864  358899999999999985 788888766654   33445689999999888762   


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                 .-..+++...++++.++.+..+++.+|..-+
T Consensus       151 -----------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v  181 (483)
T 3mog_A          151 -----------KLVEVVSGLATAAEVVEQLCELTLSWGKQPV  181 (483)
T ss_dssp             -----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -----------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEE
Confidence                       3456788888999999999999999996433

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.46  E-value=1.1e-12  Score=119.13  Aligned_cols=160  Identities=16%  Similarity=0.164  Sum_probs=107.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHH-HHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+.+ ++|+|||+|.||.++++.|.+.      |++ |.+.+ ++++..+.. .+.|+..    ..+++++++++|+|++
T Consensus         7 ~~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~-~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~   74 (266)
T 3d1l_A            7 SIED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYS-RTEESARELAQKVEAEY----TTDLAEVNPYAKLYIV   74 (266)
T ss_dssp             CGGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEEC-SSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEE
T ss_pred             CCCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEe-CCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEE
Confidence            3556 8999999999999999999998      987 54444 444433333 3347653    4578888999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G-v~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ++|+..+.++++++.+.++++++|+++++ .....+..   .++. ..  ..||..|....       ......+.++++
T Consensus        75 av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~--~~~~~~~~~g~-------~~~~~~~~~~~v  141 (266)
T 3d1l_A           75 SLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YG--VFYPMQTFSKQ-------REVDFKEIPFFI  141 (266)
T ss_dssp             CCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EE--EEEECCCC----------CCCCCTTCCEEE
T ss_pred             ecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-cc--CcCCceecCCC-------chhhcCCCeEEE
Confidence            99999888899999999999999997654 44433332   3332 11  24554442210       000112345533


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCceeecChh
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPFTFATTLE  295 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~  295 (313)
                         ...+++..+.++.+++.+|. +++.+..+
T Consensus       142 ---~~~~~~~~~~~~~l~~~~g~-~~~~~~~~  169 (266)
T 3d1l_A          142 ---EASSTEDAAFLKAIASTLSN-RVYDADSE  169 (266)
T ss_dssp             ---EESSHHHHHHHHHHHHTTCS-CEEECCHH
T ss_pred             ---ecCCHHHHHHHHHHHHhcCC-cEEEeCHH
Confidence               22357889999999999995 56666644

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.44  E-value=7.9e-13  Score=124.50  Aligned_cols=150  Identities=19%  Similarity=0.275  Sum_probs=106.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |+||||||+|+||..+|++|.+.      |++|.+++|. ++..+...+.|...    ..++.|++++||+|++++|+..
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~-~~~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~   71 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ   71 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred             cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence            68999999999999999999999      9998777665 44455666788875    6799999999999999999988


Q ss_pred             HHH-HHH---HHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          191 QAD-NYE---KIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       191 ~~~-vi~---ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ..+ ++.   .+.+.+++|++|+|++-+..   ..+.+  ..-..++.|+-. |-.=++.   .=++|        +..|
T Consensus        72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lDa-PVsGg~~---~A~~G--------~L~i  137 (300)
T 3obb_A           72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLDA-PVSGGTA---GAAAG--------TLTF  137 (300)
T ss_dssp             HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEEC-CEESCHH---HHHHT--------CEEE
T ss_pred             HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEec-CCCCCHH---HHHhC--------CEEE
Confidence            765 665   37889999999999887643   12221  111346777752 3111111   11223        2334


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      -+..+  +++.+.++.+++.+|..
T Consensus       138 mvGG~--~~~~~~~~p~l~~~g~~  159 (300)
T 3obb_A          138 MVGGD--AEALEKARPLFEAMGRN  159 (300)
T ss_dssp             EEESC--HHHHHHHHHHHHHHEEE
T ss_pred             EEeCC--HHHHHHHHHHHHHhCCC
Confidence            55554  68999999999999953

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.44  E-value=8.2e-14  Score=133.07  Aligned_cols=112  Identities=15%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             ccccchhhhhhcCCCcc--cccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           85 SLANRDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        85 ~~~~~~e~~v~~G~w~f--~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      ++..|++. +|+|+|.+  .....+|.| ++|||||+|.||.++|+.++.+      |++|++.++.....   + +.++
T Consensus       119 ~~~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~  186 (333)
T 1dxy_A          119 NMGKVQAQ-LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDF  186 (333)
T ss_dssp             THHHHHHH-HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTC
T ss_pred             hHHHHHHH-HHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhcc
Confidence            35567777 89999853  234579999 9999999999999999999999      99987665543322   1 1222


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEecC
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHG  213 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~G  213 (313)
                      .     ..++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++-
T Consensus       187 ~-----~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~sr  234 (333)
T 1dxy_A          187 D-----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTAR  234 (333)
T ss_dssp             E-----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSC
T ss_pred             c-----cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCC
Confidence            2     3488999999999999999988654 774 78899999999998763

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.42  E-value=6.4e-13  Score=123.71  Aligned_cols=150  Identities=19%  Similarity=0.162  Sum_probs=106.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|+|||+|.||.++|++|.+.      |++|+++++ +++..+...+.|...   ...+++|++++||+||+++|+...
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr-~~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~   77 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADL-NPQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ   77 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC------CCeEEEEEC-CHHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence            7899999999999999999999      998766654 445555666667642   034788999999999999998754


Q ss_pred             -HHHH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          192 -ADNY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       192 -~~vi---~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                       ..++   +++.+.+++|++|+|++++...   .+.+  .....++.|+. +|...+...   -.       .|...+++
T Consensus        78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~  144 (303)
T 3g0o_A           78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA--ALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA  144 (303)
T ss_dssp             HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE
T ss_pred             HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe
Confidence             4566   6788999999999998876432   2211  01123577887 884433331   12       24445444


Q ss_pred             eccCCCHHHHHHHHHHHHHcCCC
Q 021356          265 VHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ..   +++..+.++.+++.+|..
T Consensus       145 gg---~~~~~~~~~~ll~~~g~~  164 (303)
T 3g0o_A          145 SG---SEAAFTRLKPVLDAVASN  164 (303)
T ss_dssp             EC---CHHHHHHHHHHHHHHEEE
T ss_pred             CC---CHHHHHHHHHHHHHHCCC
Confidence            43   478999999999999954

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.42  E-value=1.9e-13  Score=130.83  Aligned_cols=135  Identities=19%  Similarity=0.111  Sum_probs=98.6

Q ss_pred             cccchhhhhhcCCCccc--ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      +..+++. +++|+|...  ....+|.| +++||||+|.||+.+|+.++.+      |++|+++++...   +...+.++.
T Consensus       116 ~~~~~~~-~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~  184 (334)
T 3kb6_A          116 LKRIEDR-VKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV  184 (334)
T ss_dssp             HHHHHHH-HHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE
T ss_pred             ccccccc-ccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce
Confidence            4445666 888888443  34589999 9999999999999999999999      999865554332   233445655


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~  234 (313)
                           ..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+.++ |-.      +..+++ +.+....++|..
T Consensus       185 -----~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~-g~i~gA~LDV~~  258 (334)
T 3kb6_A          185 -----YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQR-GKFSGLGLDVFE  258 (334)
T ss_dssp             -----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCEEEEEESCCT
T ss_pred             -----ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHh-CCceEEEEeCCC
Confidence                 4589999999999999999998876 776 8899999999999664 532      223332 222223456666


Q ss_pred             ecc
Q 021356          235 VCP  237 (313)
Q Consensus       235 vhP  237 (313)
                      .+|
T Consensus       259 ~EP  261 (334)
T 3kb6_A          259 DEE  261 (334)
T ss_dssp             THH
T ss_pred             CCC
Confidence            666

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.41  E-value=1.3e-12  Score=114.39  Aligned_cols=152  Identities=14%  Similarity=0.077  Sum_probs=107.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      |+|+||| .|.||.++++.|.+.      |++|.+..|..++..+...+.+       +.     ..+++++++++|+|+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi   69 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV   69 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence            5899999 999999999999998      9988776665332222222222       22     236778899999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec-Cch--------------hhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH-GFL--------------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv~--------------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      +++|+....++++++.+.++ +++|++++ |+.              ...+++   .++ +..+++.||+.++.......
T Consensus        70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~  144 (212)
T 1jay_A           70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD  144 (212)
T ss_dssp             ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT
T ss_pred             EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC
Confidence            99999888888888877774 88888654 565              344443   334 36899999988877631110


Q ss_pred             HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCc
Q 021356          249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPF  288 (313)
Q Consensus       249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al-G~~~  288 (313)
                             +.|...++++.+  ++++.+.++++++.+ |..-
T Consensus       145 -------~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~  176 (212)
T 1jay_A          145 -------EKFDWDVPVCGD--DDESKKVVMSLISEIDGLRP  176 (212)
T ss_dssp             -------CCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEE
T ss_pred             -------CCCCccEEEECC--cHHHHHHHHHHHHHcCCCCc
Confidence                   234445566554  578999999999999 9643

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.41  E-value=5.4e-13  Score=123.01  Aligned_cols=152  Identities=18%  Similarity=0.112  Sum_probs=105.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch-
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-  189 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~-  189 (313)
                      |++|+|||+|+||.++|++|.+.      |++|+++++. ++..+...+.|...    ..+++|++++||+|++++|+. 
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~   69 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRN-PAKCAPLVALGARQ----ASSPAEVCAACDITIAMLADPA   69 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSS-GGGGHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence            57999999999999999999999      9988766554 44445555567764    568999999999999999987 


Q ss_pred             hHHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       190 a~~~vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                      ...+++   +++.+.+++|++|++++.......+.....+ ..++.|+.. |...+..   ....       |...+++ 
T Consensus        70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~---~a~~-------g~l~~~~-  137 (287)
T 3pdu_A           70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKK---PAED-------GTLIILA-  137 (287)
T ss_dssp             HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHHH-------TCEEEEE-
T ss_pred             HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHH---HHhc-------CCEEEEE-
Confidence            455677   6788999999999998876432111100011 135677764 5322222   1122       3334343 


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCC
Q 021356          266 HQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ..  +++..+.++.+++.+|..
T Consensus       138 gg--~~~~~~~~~~ll~~~g~~  157 (287)
T 3pdu_A          138 AG--DQSLFTDAGPAFAALGKK  157 (287)
T ss_dssp             EE--CHHHHHHTHHHHHHHEEE
T ss_pred             eC--CHHHHHHHHHHHHHhCCC
Confidence            33  368999999999999953

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.38  E-value=3.1e-12  Score=123.33  Aligned_cols=150  Identities=17%  Similarity=0.120  Sum_probs=108.1

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC---CEEEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVLL  184 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~A---DvIiL  184 (313)
                      +++ |+|||||+|.||.++|++|.+.      |++|.++++ +++..+...+.|+..    ..+++|+++++   |+|++
T Consensus        20 m~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr-~~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           20 FQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDL-NVNAVQALEREGIAG----ARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEEE
T ss_pred             hcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeC-CHHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEEE
Confidence            456 8999999999999999999999      998766654 445555666677763    46899999999   99999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceE
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS  261 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~  261 (313)
                      ++|+....++++++.+.+++|++|+|++....   ..+..  .....++.|+.. |-.-+..   .-+.       |. .
T Consensus        88 ~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vda-pVsGg~~---~a~~-------G~-~  153 (358)
T 4e21_A           88 MVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVDV-GTSGGIF---GLER-------GY-C  153 (358)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEEE-EEECGGG---HHHH-------CC-E
T ss_pred             eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEeC-CCCCCHH---HHhc-------CC-e
Confidence            99999667799999999999999999887642   12211  112346777763 5221111   1112       33 3


Q ss_pred             EEEeccCCCHHHHHHHHHHHHHcCC
Q 021356          262 SFAVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       262 iitp~~d~~~ea~e~a~~L~~alG~  286 (313)
                       |.+..+  +++.+.++.+++.+|.
T Consensus       154 -im~GG~--~~a~~~~~~ll~~lg~  175 (358)
T 4e21_A          154 -LMIGGE--KQAVERLDPVFRTLAP  175 (358)
T ss_dssp             -EEEESC--HHHHHHTHHHHHHHSC
T ss_pred             -eeecCC--HHHHHHHHHHHHHhcc
Confidence             555554  6899999999999994

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.37  E-value=4.1e-12  Score=118.17  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh-
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-  190 (313)
                      ++|+|||+|.||.++|++|.+.      |++|+++++.. +..+...+.|+..    ..+++|+++ ||+|++++|+.. 
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~   83 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRI-EAMTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ   83 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSST-TTSHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence            6899999999999999999999      99887666554 4445566678764    568999999 999999999764 


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      ..++++++.+.++++++|+|++.+...   .+..  .....++.|+. +|-..+..   ....       |... +.+..
T Consensus        84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~-~~~gg  149 (296)
T 3qha_A           84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELAR--DLKARDIHIVD-APVSGGAA---AAAR-------GELA-TMVGA  149 (296)
T ss_dssp             HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHH--HHGGGTCEEEE-CCEESCHH---HHHH-------TCEE-EEEEC
T ss_pred             HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHH---HHhc-------CCcc-EEecC
Confidence            456889999999999999998876432   2211  01123566765 46332222   1122       2334 33333


Q ss_pred             CCCHHHHHHHHHHHHHcCCC
Q 021356          268 DVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       268 d~~~ea~e~a~~L~~alG~~  287 (313)
                        +++..+.++.+++.+|..
T Consensus       150 --~~~~~~~~~~ll~~~g~~  167 (296)
T 3qha_A          150 --DREVYERIKPAFKHWAAV  167 (296)
T ss_dssp             --CHHHHHHHHHHHHHHEEE
T ss_pred             --CHHHHHHHHHHHHHHcCC
Confidence              378999999999999954

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.37  E-value=7.8e-12  Score=114.62  Aligned_cols=159  Identities=14%  Similarity=0.109  Sum_probs=105.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC--------CCcCCHHhhhc---cC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------GTLGDIYETIS---GS  179 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--------~~~~~~~e~i~---~A  179 (313)
                      +|+|+|||+|+||.++|..|.+.      |++|.+..++ ++..+...+.|+....        -...+.+++.+   ++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQW-PAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV   75 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence            37999999999999999999998      9988766554 3344444455654210        00113344444   99


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEe-cCchh-hhhhhcccCCCCCccEEEeccC------CCchhHHHHHHhc
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL-GHLQSIGLDFPKNIGVIAVCPK------GMGPSVRRLYVQG  251 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~-~Gv~l-~~~~~~~~~l~~~i~vV~vhPn------~pg~~~r~lf~~G  251 (313)
                      |+||+++|+....++++++.+.++++++|+++ .|+.. ..+.+   .+++. +++..++.      +|+..        
T Consensus        76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~--------  143 (316)
T 2ew2_A           76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRV--------  143 (316)
T ss_dssp             SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEE--------
T ss_pred             CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEE--------
Confidence            99999999998888999999999999988865 57654 34443   44443 56644431      12211        


Q ss_pred             ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcee
Q 021356          252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF  290 (313)
Q Consensus       252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~  290 (313)
                       ...+.|... +++....+++..+.+..+++.+|..-..
T Consensus       144 -~~~~~g~~~-i~~~~~~~~~~~~~~~~ll~~~g~~~~~  180 (316)
T 2ew2_A          144 -KLLGDGEIE-LENIDPSGKKFALEVVDVFQKAGLNPSY  180 (316)
T ss_dssp             -EECSCCCEE-EEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred             -EEecCCcEE-EeecCCCccHHHHHHHHHHHhCCCCcEE
Confidence             012356666 4554445678889999999999965433

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.36  E-value=2.1e-12  Score=120.83  Aligned_cols=155  Identities=17%  Similarity=0.046  Sum_probs=105.5

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      +.. ++|||||+|+||.++|++|.+.      |++|+++++. ++..+.+.+.|...    ..+++|++++||+||+++|
T Consensus         7 ~~~-~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            7 SFE-FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRS-PGKAAALVAAGAHL----CESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CCS-CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCS
T ss_pred             cCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeC
Confidence            445 8999999999999999999999      9988766544 44455555667764    5689999999999999999


Q ss_pred             chh-HHHHHH--HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceE
Q 021356          188 DAA-QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS  261 (313)
Q Consensus       188 ~~a-~~~vi~--ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~  261 (313)
                      +.. ..+++.  .+ ..+++|++|+|++.+...   .+..  ..-..++.|+.. |-.-++..     .+     .+-..
T Consensus        75 ~~~~~~~v~~~~~l-~~~~~g~ivid~st~~~~~~~~l~~--~~~~~g~~~vda-pv~g~~~~-----~~-----~~~~~  140 (306)
T 3l6d_A           75 DNHATHEVLGMPGV-ARALAHRTIVDYTTNAQDEGLALQG--LVNQAGGHYVKG-MIVAYPRN-----VG-----HRESH  140 (306)
T ss_dssp             SHHHHHHHHTSTTH-HHHTTTCEEEECCCCCTTHHHHHHH--HHHHTTCEEEEE-EEESCGGG-----TT-----CTTCE
T ss_pred             CHHHHHHHhcccch-hhccCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-ccccCccc-----cc-----CCceE
Confidence            886 455775  55 346899999998876432   2211  011235677764 53222111     11     22224


Q ss_pred             EEEeccCCCHHHHHHHHHHHHHcCCCceeec
Q 021356          262 SFAVHQDVDGRATNVALGWSVALGSPFTFAT  292 (313)
Q Consensus       262 iitp~~d~~~ea~e~a~~L~~alG~~~~~~t  292 (313)
                      +++ ..  ++++.+.++.+++.+|. +++.+
T Consensus       141 i~~-gg--~~~~~~~~~~ll~~lg~-~~~~~  167 (306)
T 3l6d_A          141 SIH-TG--DREAFEQHRALLEGLAG-HTVFL  167 (306)
T ss_dssp             EEE-EE--CHHHHHHHHHHHHTTCS-EEEEC
T ss_pred             EEE-cC--CHHHHHHHHHHHHHhcC-CEEEe
Confidence            343 33  37899999999999976 55554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.36  E-value=3.8e-12  Score=120.01  Aligned_cols=144  Identities=15%  Similarity=0.025  Sum_probs=99.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCc------ccHHHHHHCCceecCCCcC-CHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~------~s~~~A~~~G~~~~~~~~~-~~~e~i~~ADvIi  183 (313)
                      ++|||||+|.||.++|++|.+.      | ++|+++++...      ...+...+.|+      .. +++|++++||+||
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~------~~~s~~e~~~~aDvVi   92 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV------EPLDDVAGIACADVVL   92 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC------EEESSGGGGGGCSEEE
T ss_pred             CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC------CCCCHHHHHhcCCEEE
Confidence            7999999999999999999999      9 88876665531      23344455565      23 6778999999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEecc-CCCchhHHHHHHhcccccCCCc
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCP-KGMGPSVRRLYVQGKEINGAGI  259 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhP-n~pg~~~r~lf~~G~e~~g~G~  259 (313)
                      +++|+....+.++++.+.++++++|+|++++...   .+.+  .....++.|+.. | .+|...     ..       |.
T Consensus        93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~--~l~~~g~~~~d~-pv~g~~~a-----~~-------g~  157 (317)
T 4ezb_A           93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAG--AIATGKGSFVEG-AVMARVPP-----YA-------EK  157 (317)
T ss_dssp             ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHH--HHHTSSCEEEEE-EECSCSTT-----TG-------GG
T ss_pred             EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-cCCCCchh-----hc-------CC
Confidence            9999999999889999999999999998876432   2221  011224566542 3 122111     01       23


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          260 NSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       260 ~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ..+++...+   +  +.++.+++.+|..
T Consensus       158 l~i~vgg~~---~--~~~~~ll~~~g~~  180 (317)
T 4ezb_A          158 VPILVAGRR---A--VEVAERLNALGMN  180 (317)
T ss_dssp             SEEEEESTT---H--HHHHHHHHTTTCE
T ss_pred             EEEEEeCCh---H--HHHHHHHHHhCCC
Confidence            444555443   2  7888999999853

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.33  E-value=1.1e-11  Score=116.54  Aligned_cols=150  Identities=18%  Similarity=0.108  Sum_probs=104.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .... ++|+|||+|.||.++|++|.+.      |++|+++++ +++..+...+.|+..    ..+++|++++||+|++++
T Consensus        28 ~~~~-~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr-~~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           28 DPYA-RKITFLGTGSMGLPMARRLCEA------GYALQVWNR-TPARAASLAALGATI----HEQARAAARDADIVVSML   95 (320)
T ss_dssp             -CCC-SEEEEECCTTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECC
T ss_pred             ccCC-CEEEEECccHHHHHHHHHHHhC------CCeEEEEcC-CHHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEEC
Confidence            3445 8999999999999999999999      998766554 444455556667763    568999999999999999


Q ss_pred             cchh-HHHHHH--HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          187 SDAA-QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       187 P~~a-~~~vi~--ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      |+.. ..+++.  ++.+.++++++|+|++.....   .+..  .....++.|+. +|-..+..   .-..       |..
T Consensus        96 p~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l  162 (320)
T 4dll_A           96 ENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAA--RLGALGIAHLD-TPVSGGTV---GAEQ-------GTL  162 (320)
T ss_dssp             SSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECHHH---HHHH-------TCE
T ss_pred             CCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHh---HHhc-------CCe
Confidence            9754 455776  788899999999998876432   2211  01123567776 36332221   1122       233


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHc
Q 021356          261 SSFAVHQDVDGRATNVALGWSVAL  284 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~al  284 (313)
                      . +.+..  ++++.+.++.+++.+
T Consensus       163 ~-i~~gg--~~~~~~~~~~ll~~~  183 (320)
T 4dll_A          163 V-IMAGG--KPADFERSLPLLKVF  183 (320)
T ss_dssp             E-EEEES--CHHHHHHHHHHHHHH
T ss_pred             e-EEeCC--CHHHHHHHHHHHHhc
Confidence            4 33333  378999999999999

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.00  E-value=1.4e-13  Score=122.34  Aligned_cols=151  Identities=14%  Similarity=0.093  Sum_probs=102.6

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      +.+ ++|+|||+|+||.++|++|.+.      |++|++..|...  .+...+.|+.     ..+.+++++++|+|++++|
T Consensus        17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~-----~~~~~~~~~~aDvVilav~   82 (201)
T 2yjz_A           17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAE-----VLCYSEAASRSDVIVLAVH   82 (201)
Confidence            566 8999999999999999999998      988776665432  2222334543     2367788999999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEe-cCch--------hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCC
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLS-HGFL--------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG  258 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~-~Gv~--------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G  258 (313)
                      ++...+++ ++.+ ++++++|+++ .|+.        ...+++   .++. ..+|+.+||++.......-..|     . 
T Consensus        83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g-----~-  150 (201)
T 2yjz_A           83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA-----S-  150 (201)
Confidence            98766666 4433 5678888754 5663        233433   3443 4899999999887632111111     1 


Q ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          259 INSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ... +...+  ++++.+.++.+++++|..
T Consensus       151 ~~~-~~~g~--~~~~~~~v~~ll~~~G~~  176 (201)
T 2yjz_A          151 RQV-FVCGN--DSKAKDRVMDIARTLGLT  176 (201)
Confidence            113 33333  367889999999999964

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.32  E-value=1.6e-12  Score=121.98  Aligned_cols=151  Identities=11%  Similarity=0.111  Sum_probs=99.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      +||||||+|+||..+|++|.+.      |++|+++++.. +..+...+.|...    ..++.|+++++|+||+++|+...
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~   74 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTA-SKAEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA   74 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence            5899999999999999999999      99987766553 3334445567764    56899999999999999999877


Q ss_pred             HH-HH-HHHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          192 AD-NY-EKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       192 ~~-vi-~ei~~~mk~gaiLid~~Gv~l~~~~~~~-~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      .+ ++ .++.+.++++.+++|.+-+.....++.. ..-..++.|+.. |-.-++.   .-.+|       .-. +.+..+
T Consensus        75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~lda-pVsGg~~---~a~~g-------~l~-im~gG~  142 (297)
T 4gbj_A           75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGA-PIFARPE---AVRAK-------VGN-ICLSGN  142 (297)
T ss_dssp             HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHHHT-------CCE-EEEEEC
T ss_pred             HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecC-CcCCCcc---ccccc-------cce-eecccc
Confidence            54 54 4788999999999998876432111100 111246677652 3111111   01122       333 444444


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 021356          269 VDGRATNVALGWSVALGSP  287 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG~~  287 (313)
                        +++.+.++.+++.+|..
T Consensus       143 --~~~~~~~~~~l~~~g~~  159 (297)
T 4gbj_A          143 --AGAKERIKPIVENFVKG  159 (297)
T ss_dssp             --HHHHHHHHHHHHTTCSE
T ss_pred             --hhHHHHHHHHHHHhhCC
Confidence              68899999999999953

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.31  E-value=3.1e-12  Score=117.54  Aligned_cols=151  Identities=17%  Similarity=0.143  Sum_probs=99.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh-
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-  190 (313)
                      |+|+|||+|.||.++|++|.+.      |++|++.++. ++..+...+.|+..    ..+++++++++|+|++++|... 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~   69 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVF-PDACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN   69 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSS-THHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence            5799999999999999999998      9887665554 44445555567653    4578899999999999997654 


Q ss_pred             HHHHHHH---HHhcCCCCcEEEEecCchhhhhhhcccCCC-CCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          191 QADNYEK---IFSCMKPNSILGLSHGFLLGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       191 ~~~vi~e---i~~~mk~gaiLid~~Gv~l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      ..+++.+   +.+.++++++|++++|+.....+.....++ ....++ .+|..+++   .....       |... +.+.
T Consensus        70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~-~~p~~~g~---~~a~~-------~~~~-~~~~  137 (296)
T 2gf2_A           70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM-DAPVSGGV---GAARS-------GNLT-FMVG  137 (296)
T ss_dssp             HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-ECCEESHH---HHHHH-------TCEE-EEEE
T ss_pred             HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE-EcCCCCCh---hHHhc-------CcEE-EEeC
Confidence            4557765   456789999999988876533221000111 123333 23432222   12222       3334 3343


Q ss_pred             cCCCHHHHHHHHHHHHHcCCC
Q 021356          267 QDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       267 ~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .  +++..+.++.+++.+|..
T Consensus       138 ~--~~~~~~~v~~l~~~~g~~  156 (296)
T 2gf2_A          138 G--VEDEFAAAQELLGCMGSN  156 (296)
T ss_dssp             S--CGGGHHHHHHHHTTTEEE
T ss_pred             C--CHHHHHHHHHHHHHHcCC
Confidence            3  468889999999999964

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.31  E-value=6.6e-12  Score=125.31  Aligned_cols=151  Identities=13%  Similarity=0.136  Sum_probs=105.0

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhcc---CCE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDL  181 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~i~~---ADv  181 (313)
                      +.- ++|||||+|+||.++|++|.+.      |++|.+++|..++..+...+.   |+..    ..+++|++++   +|+
T Consensus        13 ~~~-~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDv   81 (480)
T 2zyd_A           13 MSK-QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRR   81 (480)
T ss_dssp             --C-BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCE
T ss_pred             cCC-CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCE
Confidence            344 8999999999999999999999      999877766543333333332   6653    4588888877   999


Q ss_pred             EEEcccch-hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccC
Q 021356          182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEING  256 (313)
Q Consensus       182 IiLavP~~-a~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g  256 (313)
                      ||+++|+. ...++++++.+.+++|++|+|++...   ...+.+   .+ ..++.|+. +|...++..   ...      
T Consensus        82 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~---~l~~~g~~~v~-~pv~gg~~~---a~~------  148 (480)
T 2zyd_A           82 ILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR---ELSAEGFNFIG-TGVSGGEEG---ALK------  148 (480)
T ss_dssp             EEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEE-EEEESHHHH---HHH------
T ss_pred             EEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH---HHHHCCCCeeC-CccccCHhH---Hhc------
Confidence            99999995 67779999999999999999876442   122222   11 12567774 474333321   222      


Q ss_pred             CCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          257 AGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       257 ~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                       |. . +.+..  ++++.+.++.+++.+|..
T Consensus       149 -g~-~-i~~gg--~~~~~~~v~~ll~~~g~~  174 (480)
T 2zyd_A          149 -GP-S-IMPGG--QKEAYELVAPILTKIAAV  174 (480)
T ss_dssp             -CC-E-EEEES--CHHHHHHHHHHHHHHSCB
T ss_pred             -CC-e-EEecC--CHHHHHHHHHHHHHHhcc
Confidence             34 4 44544  378999999999999975

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.31  E-value=1.4e-11  Score=114.54  Aligned_cols=157  Identities=13%  Similarity=0.093  Sum_probs=102.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCceecC-------CCcC--CHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~-------~~~~--~~~e~i~~ADv  181 (313)
                      |+|+|||+|+||.++|..|.+.      |++|.+..+. +++..+...+.|.....       ....  ++.++++++|+
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence            5899999999999999999998      9988766651 33334444444431000       0123  56678899999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec-Cc------hhhhhhhc-ccCCCC-CccEEEeccCCCchhHHHHHHhcc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSI-GLDFPK-NIGVIAVCPKGMGPSVRRLYVQGK  252 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv------~l~~~~~~-~~~l~~-~i~vV~vhPn~pg~~~r~lf~~G~  252 (313)
                      ||+++|+....++++++.+ ++++++|+++. |+      ....+.+. ...++. ....+...|+.+..    ..    
T Consensus        75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~----~~----  145 (335)
T 1txg_A           75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE----VA----  145 (335)
T ss_dssp             EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHH----HH----
T ss_pred             EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHH----HH----
Confidence            9999999988889999999 99999988775 87      22222220 001121 11245677765322    22    


Q ss_pred             cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       253 e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                          .|.+..+++.. .+++..+.+..+++..|..-
T Consensus       146 ----~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~  176 (335)
T 1txg_A          146 ----KRMPTTVVFSS-PSESSANKMKEIFETEYFGV  176 (335)
T ss_dssp             ----TTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEE
T ss_pred             ----ccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEE
Confidence                23433344443 24788899999999888643

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.31  E-value=1.9e-11  Score=127.44  Aligned_cols=154  Identities=10%  Similarity=0.064  Sum_probs=111.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceec---------CCCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE---------NGTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~---------~~~~~  170 (313)
                      +++|+|||+|.||.++|..+.+.      |++|++.+++ ++..+.+           .+.|...+         -....
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~  386 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL  386 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred             CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence            58999999999999999999999      9998766554 3333322           22342100         00123


Q ss_pred             CHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      ++ +.+++||+||+++|.+...  .++.++.+.++++++|+ .++++.+..+.+   .+...-+|++.||..|...    
T Consensus       387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~----  458 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM----  458 (715)
T ss_dssp             SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred             CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc----
Confidence            45 6789999999999987643  48889999999999987 466666655544   2333357999999776654    


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                +....+++...++++.++.+..+++.+|..-+
T Consensus       459 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v  490 (715)
T 1wdk_A          459 ----------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI  490 (715)
T ss_dssp             ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCEeE
Confidence                      23455778888899999999999999996433

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.28  E-value=8.5e-12  Score=125.13  Aligned_cols=147  Identities=16%  Similarity=0.086  Sum_probs=104.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhhcc---CCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~~~~~~~e~i~~---ADvIi  183 (313)
                      .+|||||+|+||.++|++|.+.      |++|.+++|.. +..+...+     .|+..    ..+++|++++   +|+||
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~-~~~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQ-SKVDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSS-HHHHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred             CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence            7899999999999999999999      99987766654 33444444     46653    4588888877   99999


Q ss_pred             Ecccch-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCC
Q 021356          184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG  258 (313)
Q Consensus       184 LavP~~-a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G  258 (313)
                      +++|+. ...++++++.+.+++|++|+|++....   ..+.+   .+ ..++.|+. +|...++.   ....       |
T Consensus        80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~---~l~~~g~~~v~-~pVsgg~~---~a~~-------G  145 (497)
T 2p4q_A           80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE---ELKKKGILFVG-SGVSGGEE---GARY-------G  145 (497)
T ss_dssp             ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEE-EEEESHHH---HHHH-------C
T ss_pred             EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH---HHHHcCCceeC-CCcccChh---Hhhc-------C
Confidence            999995 666799999999999999998775532   22222   11 13567774 46222222   1122       3


Q ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          259 INSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      . . +.+..  ++++.+.++.+++.+|..
T Consensus       146 ~-~-im~gg--~~e~~~~v~~ll~~~g~~  170 (497)
T 2p4q_A          146 P-S-LMPGG--SEEAWPHIKNIFQSISAK  170 (497)
T ss_dssp             C-E-EEEEE--CGGGHHHHHHHHHHHSCE
T ss_pred             C-e-EEecC--CHHHHHHHHHHHHHhcCc
Confidence            4 3 44444  368899999999999964

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.27  E-value=2.1e-11  Score=108.28  Aligned_cols=145  Identities=17%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .++.+ ++|+|||+|+||.++|+.|.+.      |++|++..+.. +                      .+++||+|+++
T Consensus        15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~-~----------------------~~~~aD~vi~a   64 (209)
T 2raf_A           15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKD-Q----------------------ATTLGEIVIMA   64 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTC-C----------------------CSSCCSEEEEC
T ss_pred             cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-H----------------------HhccCCEEEEc
Confidence            56778 9999999999999999999999      99876665432 1                      45789999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEe-cCch---------------hhhhhhcccCCCCCccEEE-eccCCCchhHHHHH
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLS-HGFL---------------LGHLQSIGLDFPKNIGVIA-VCPKGMGPSVRRLY  248 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~-~Gv~---------------l~~~~~~~~~l~~~i~vV~-vhPn~pg~~~r~lf  248 (313)
                      +|+....++++++.+.++ +++|+++ .|+.               ...+++   .+| +.+|++ .+|. .++.....-
T Consensus        65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~-~~p~~~~~~  138 (209)
T 2raf_A           65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNTT-FAATLQSGQ  138 (209)
T ss_dssp             SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTTS-CHHHHHHSE
T ss_pred             CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeecc-cHhhccccc
Confidence            998888889998888888 8988875 4453               233333   344 467888 5652 233321111


Q ss_pred             HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecC
Q 021356          249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT  293 (313)
Q Consensus       249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT  293 (313)
                           ..|.+...++...  .++++.+.++++++.+|+.-+....
T Consensus       139 -----~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          139 -----VNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             -----ETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             -----cCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence                 1111233323332  2478899999999999975443333

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.27  E-value=1.2e-11  Score=113.66  Aligned_cols=148  Identities=16%  Similarity=0.229  Sum_probs=101.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh-
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-  190 (313)
                      |+|+|||+|.||..+++.|.+.      |++|.+.+ ++++..+...+.|+..    ..+.+++++++|+|++++|... 
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~   74 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSD-RNPEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH   74 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhC------CCEEEEEe-CCHHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence            6899999999999999999998      99875554 4444455555667763    4578899999999999999555 


Q ss_pred             HHHHH---HHHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          191 QADNY---EKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       191 ~~~vi---~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ...++   +++.+.+++|++|++++...   ...+.+   .++ .++.|+.. |..+...   ....+       ...++
T Consensus        75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-pv~~~~~---~~~~~-------~~~~~  140 (299)
T 1vpd_A           75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD---ALKAKGVEMLDA-PVSGGEP---KAIDG-------TLSVM  140 (299)
T ss_dssp             HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH---HHHTTTCEEEEC-CEESHHH---HHHHT-------CEEEE
T ss_pred             HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEEe-cCCCCHh---HHhcC-------CEEEE
Confidence            45577   57888899999999876542   223322   122 35667654 5332222   11122       22334


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      +..   +++..+.++.+++.+|..
T Consensus       141 ~~~---~~~~~~~~~~ll~~~g~~  161 (299)
T 1vpd_A          141 VGG---DKAIFDKYYDLMKAMAGS  161 (299)
T ss_dssp             EES---CHHHHHHHHHHHHTTEEE
T ss_pred             eCC---CHHHHHHHHHHHHHHcCC
Confidence            432   578899999999999964

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.27  E-value=8.1e-11  Score=116.72  Aligned_cols=152  Identities=14%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec-------CCCcCCH
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI  172 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------~~~~~~~  172 (313)
                      +++|+|||+|.||.++|..+...      |++|++.++. ++..+.+.+           .|....       .....+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~  109 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST  109 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence            48999999999999999999999      9988666544 333333322           121000       0002355


Q ss_pred             HhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHH
Q 021356          173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV  249 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~  249 (313)
                       +.+++||+||+++|.+..  .+++.++.+.++++++|+. +++..+..+..   .+....+|++.||..|...      
T Consensus       110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------  179 (463)
T 1zcj_A          110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------  179 (463)
T ss_dssp             -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred             -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence             578999999999998753  4588889999999999885 44555555543   3333457999999766543      


Q ss_pred             hcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       250 ~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                              +....+++....+++.++.+..+++.+|..
T Consensus       180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~  209 (463)
T 1zcj_A          180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKI  209 (463)
T ss_dssp             --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred             --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence                    235667888888999999999999999954

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.25  E-value=2.7e-11  Score=121.39  Aligned_cols=152  Identities=16%  Similarity=0.053  Sum_probs=103.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhhc---cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~i~---~ADvIiLavP  187 (313)
                      ++|||||+|.||.++|++|.+.      |++|+++++.. +..+...+.+..... ....+++|+++   ++|+|++++|
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~-~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp   77 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTV-SKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK   77 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSST-HHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred             CEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence            7899999999999999999999      99887666554 444444444321000 01357888876   5999999999


Q ss_pred             ch-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          188 DA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       188 ~~-a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      +. ...++++++.++|++|++|+|++....   .....  .....++.|+.. |- .+.. . .-+.|       . + |
T Consensus        78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pV-sGg~-~-gA~~G-------~-~-i  142 (484)
T 4gwg_A           78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GV-SGGE-E-GARYG-------P-S-L  142 (484)
T ss_dssp             SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EE-ESHH-H-HHHHC-------C-E-E
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-Cc-cCCH-H-HHhcC-------C-e-e
Confidence            96 555699999999999999999886642   11111  111246788874 62 2222 1 12223       3 4 4


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .+..+  +++.+.++.+++.+|.+
T Consensus       143 m~GG~--~ea~~~v~pll~~ig~~  164 (484)
T 4gwg_A          143 MPGGN--KEAWPHIKTIFQGIAAK  164 (484)
T ss_dssp             EEEEC--GGGHHHHHHHHHHHSCB
T ss_pred             ecCCC--HHHHHHHHHHHHHhcCc
Confidence            56554  68999999999999964

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.25  E-value=1.2e-11  Score=117.48  Aligned_cols=149  Identities=17%  Similarity=0.146  Sum_probs=100.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhhc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS  177 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~~~~~~~~~e~i~  177 (313)
                      ++|+|||+|+||.++|..|.+.      |++|.++.+. ++..+...+.|              +.    ...++.++++
T Consensus        16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~-~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   84 (366)
T 1evy_A           16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMN-EEEVRLVNEKRENVLFLKGVQLASNIT----FTSDVEKAYN   84 (366)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSC-HHHHHHHHHHTBCTTTSTTCBCCTTEE----EESCHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCccccccccccccccee----eeCCHHHHHc
Confidence            3999999999999999999988      9888766554 33333333332              11    1347788899


Q ss_pred             cCCEEEEcccchhHHHHHHH----HHhcCCC-CcEEEEec-Cchhhhh---hh-cccCCCCCccEEEeccCCCchhHHHH
Q 021356          178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLGHL---QS-IGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~e----i~~~mk~-gaiLid~~-Gv~l~~~---~~-~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      ++|+||+++|++...+++.+    +.+.+++ +++|+++. |+.....   .+ ....++.....+..+|+.+...    
T Consensus        85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~----  160 (366)
T 1evy_A           85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV----  160 (366)
T ss_dssp             TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH----
T ss_pred             CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH----
Confidence            99999999999888889988    9888988 89888766 7643211   11 0012232223567788764322    


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL  284 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al  284 (313)
                      +        .|....+... ..+++..+.+..++...
T Consensus       161 ~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~  188 (366)
T 1evy_A          161 A--------TGVFTCVSIA-SADINVARRLQRIMSTG  188 (366)
T ss_dssp             H--------TTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred             H--------hCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence            2        2444434443 23568888999999988

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.24  E-value=3.1e-11  Score=110.58  Aligned_cols=148  Identities=14%  Similarity=0.098  Sum_probs=100.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      +|+|+|||+|.||.++|+.|.+.      |++|++.+  +++..+...+.|+..    ..+++++++++|+|++++|...
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~--~~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~   70 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT--IGPVADELLSLGAVN----VETARQVTEFADIIFIMVPDTP   70 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC--SSCCCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc--CHHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence            37999999999999999999998      99876554  444444455557653    4578899999999999998887


Q ss_pred             H-HHHHH---HHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCchhHHHHHHhcccccCCCceEE
Q 021356          191 Q-ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS  262 (313)
Q Consensus       191 ~-~~vi~---ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i  262 (313)
                      . ..++.   ++.+.+++|++|++.+...   ...+.+   .++ .++.++. .|...++   .....       |...+
T Consensus        71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~---~~a~~-------g~~~~  136 (295)
T 1yb4_A           71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ---RVNEMGADYLD-APVSGGE---IGARE-------GTLSI  136 (295)
T ss_dssp             HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEE-CCEESHH---HHHHH-------TCEEE
T ss_pred             HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCH---HHHHc-------CCeEE
Confidence            5 45776   7788899999998776542   222322   122 2455553 3533222   12222       34444


Q ss_pred             EEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          263 FAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       263 itp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ++..   +++..+.++.+++.+|..
T Consensus       137 ~~~~---~~~~~~~~~~ll~~~g~~  158 (295)
T 1yb4_A          137 MVGG---EQKVFDRVKPLFDILGKN  158 (295)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEE
T ss_pred             EECC---CHHHHHHHHHHHHHhcCC
Confidence            4433   578899999999999964

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.24  E-value=4.7e-11  Score=114.24  Aligned_cols=150  Identities=10%  Similarity=-0.016  Sum_probs=101.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC-------cEEEEEecCCcc----cHHHHHHCC--------------ceec
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEE  165 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-------~~Vivg~r~~~~----s~~~A~~~G--------------~~~~  165 (313)
                      +++|+|||+|+||.++|..|.+.      |       ++|.++.+..+.    ..+...+.+              +.  
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~--   92 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIV--   92 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEE--
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeE--
Confidence            37899999999999999999988      8       888777665430    222222211              22  


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHh----cCCCCcEEEEec-Cchh---------hhhhhcccCCCCCcc
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLSH-GFLL---------GHLQSIGLDFPKNIG  231 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~----~mk~gaiLid~~-Gv~l---------~~~~~~~~~l~~~i~  231 (313)
                        ...+++++++++|+||+++|++...++++++.+    .++++++|+++. |+..         ..+..   .++.+ .
T Consensus        93 --~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~  166 (375)
T 1yj8_A           93 --AHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---FLNIP-C  166 (375)
T ss_dssp             --EESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---HSSSC-E
T ss_pred             --EECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---HcCCC-E
Confidence              134677889999999999999888889999998    899999988665 6543         11121   12322 3


Q ss_pred             EEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .+...|+.+...    .        .|....++... .+++..+.+..++...|+.
T Consensus       167 ~v~~gp~~a~~v----~--------~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~~  209 (375)
T 1yj8_A          167 SALSGANIAMDV----A--------MENFSEATIGG-NDKDSLVIWQRVFDLPYFK  209 (375)
T ss_dssp             EEEECSCCHHHH----H--------TTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred             EEEeCCchHHHH----H--------hCCCeEEEEec-CCHHHHHHHHHHhCCCCeE
Confidence            567888764322    1        23444344433 3567888889999888854

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.23  E-value=7.5e-11  Score=111.04  Aligned_cols=149  Identities=8%  Similarity=0.000  Sum_probs=101.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC-------cEEEEEecCCcc----cHHHHHHCC--------------ceecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN  166 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-------~~Vivg~r~~~~----s~~~A~~~G--------------~~~~~  166 (313)
                      |+|+|||+|+||.++|..|.+.      |       ++|.++.+....    ..+...+.+              +.   
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---   79 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVV---   79 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEE---
T ss_pred             CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeE---
Confidence            7999999999999999999988      8       787766665430    233322211              11   


Q ss_pred             CCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec-Cchh---------hhhhhcccCCCCCccEEEec
Q 021356          167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL---------GHLQSIGLDFPKNIGVIAVC  236 (313)
Q Consensus       167 ~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv~l---------~~~~~~~~~l~~~i~vV~vh  236 (313)
                       ...+.+++++++|+||+++|++...++++++.+.++++++|+++. |+..         ..+..   .++. ...+..+
T Consensus        80 -~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~-~~~v~~g  154 (354)
T 1x0v_A           80 -AVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGI-PMSVLMG  154 (354)
T ss_dssp             -EESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTC-CEEEEEC
T ss_pred             -EEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCC-CEEEEEC
Confidence             124677889999999999999988889999999999999888654 6642         11121   1231 2457788


Q ss_pred             cCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      |+.+...    +        .|....++.. ..+++..+.+..++...|..
T Consensus       155 p~~a~~v----~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~  192 (354)
T 1x0v_A          155 ANIASEV----A--------DEKFCETTIG-CKDPAQGQLLKELMQTPNFR  192 (354)
T ss_dssp             SCCHHHH----H--------TTCCEEEEEE-CSSHHHHHHHHHHHCBTTEE
T ss_pred             CCcHHHH----H--------hcCCceEEEE-ECCHHHHHHHHHHhCCCCEE
Confidence            8764422    2        2444434443 34578888999999988864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.23  E-value=3.7e-11  Score=111.80  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=101.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc-chh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP-~~a  190 (313)
                      ++|+|||+|.||.++|+.|.+.      |++|.+.++. ++..+...+.|+..    ..+.+++++++|+|++++| +..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~   99 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRT-AEKCDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA   99 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-GGGGHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence            7899999999999999999998      9887666554 34444555567653    4578889999999999999 566


Q ss_pred             HHHHHHH---HHhcCCCCcEEEEecCchh---hhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          191 QADNYEK---IFSCMKPNSILGLSHGFLL---GHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       191 ~~~vi~e---i~~~mk~gaiLid~~Gv~l---~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ..+++.+   +++.++++++|++++....   ..+.+   .+ ..+..|+.. |. ++...  ....       |...++
T Consensus       100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~-p~-~g~~~--~~~~-------g~~~~~  165 (316)
T 2uyy_A          100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEA-PV-SGNQQ--LSND-------GMLVIL  165 (316)
T ss_dssp             HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEEC-CE-ESCHH--HHHH-------TCEEEE
T ss_pred             HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEc-Cc-cCChh--HHhh-------CCEEEE
Confidence            6667764   3478999999998876542   22222   12 134567754 42 11111  1122       344444


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      +..   +++..+.+..+++.+|..
T Consensus       166 ~~g---~~~~~~~v~~ll~~~g~~  186 (316)
T 2uyy_A          166 AAG---DRGLYEDCSSCFQAMGKT  186 (316)
T ss_dssp             EEE---CHHHHHHTHHHHHHHEEE
T ss_pred             eCC---CHHHHHHHHHHHHHhcCC
Confidence            443   368889999999999954

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.22  E-value=6.5e-11  Score=117.62  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=103.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhcc---CCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~i~~---ADvIiLa  185 (313)
                      ++|||||+|.||.++|++|.+.      |++|.+.++..+...+...+.   |+..    ..+++|++++   +|+|+++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila   75 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM   75 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred             CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence            6899999999999999999998      998876665533322333332   5553    4588888876   9999999


Q ss_pred             ccch-hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          186 ISDA-AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       186 vP~~-a~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      +|+. ...++++++.+.+++|++|++++...   ...+.+   .++ .++.|+. +|...+...   ...       |. 
T Consensus        76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~---~l~~~g~~~v~-~pv~gg~~~---a~~-------g~-  140 (474)
T 2iz1_A           76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA---ELADSGINFIG-TGVSGGEKG---ALL-------GP-  140 (474)
T ss_dssp             CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HTTTSSCEEEE-EEECSHHHH---HHH-------CC-
T ss_pred             ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHCCCeEEC-CCCCCChhh---hcc-------CC-
Confidence            9996 56678999999999999999876432   222322   222 3567774 575433321   122       34 


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      . +.+..  ++++.+.++.+++.+|..
T Consensus       141 ~-i~~gg--~~~~~~~v~~ll~~~g~~  164 (474)
T 2iz1_A          141 S-MMPGG--QKEAYDLVAPIFEQIAAK  164 (474)
T ss_dssp             C-EEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred             e-EEecC--CHHHHHHHHHHHHHHhcc
Confidence            3 23444  478999999999999975

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.22  E-value=4.9e-12  Score=123.28  Aligned_cols=137  Identities=17%  Similarity=0.151  Sum_probs=95.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+|.| ++|||||+|+||+++|+.|+.+      |++|++.++. .    .....|..     ..+++|++++||+|++|
T Consensus       112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~-~----~~~~~g~~-----~~~l~ell~~aDvV~l~  174 (380)
T 2o4c_A          112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPP-R----QAREPDGE-----FVSLERLLAEADVISLH  174 (380)
T ss_dssp             CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHH-H----HHHSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred             cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC-h----hhhccCcc-----cCCHHHHHHhCCEEEEe
Confidence            58999 9999999999999999999999      9998655432 1    11123432     45899999999999999


Q ss_pred             ccchhH----H-HHHH-HHHhcCCCCcEEEEecCch-h------hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021356          186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSHGFL-L------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK  252 (313)
Q Consensus       186 vP~~a~----~-~vi~-ei~~~mk~gaiLid~~Gv~-l------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~  252 (313)
                      +|.+..    + .+++ +.++.||+|++|++++--. +      ..+++ +......++|...+|. |..   .++.   
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~-g~i~~A~LDV~~~EP~-~~~---~l~~---  246 (380)
T 2o4c_A          175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG-GADLEVALDVWEGEPQ-ADP---ELAA---  246 (380)
T ss_dssp             CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTS-CCH---HHHT---
T ss_pred             ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCceEEeeeeccCCC-Cch---hhcc---
Confidence            999885    4 4775 7889999999999876321 1      22222 1122234666677883 322   2442   


Q ss_pred             cccCCCceEEEEecc-CCCHHH
Q 021356          253 EINGAGINSSFAVHQ-DVDGRA  273 (313)
Q Consensus       253 e~~g~G~~~iitp~~-d~~~ea  273 (313)
                            .|.++|||- ..+.++
T Consensus       247 ------~nvi~TPHiag~t~e~  262 (380)
T 2o4c_A          247 ------RCLIATPHIAGYSLEG  262 (380)
T ss_dssp             ------TCSEECSSCTTCCHHH
T ss_pred             ------CCEEEccccCcCCHHH
Confidence                  367899985 334443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.21  E-value=9.2e-11  Score=107.88  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=102.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|+|||+|.||.++++.|.+.      |++|.+.++ +++..+...+.|+..    ..+.+++++++|+|++++|....
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~-~~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~   73 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDL-MEANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI   73 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHT------TCEEEEECS-SHHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHC------CCeEEEEeC-CHHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence            7999999999999999999998      998765544 344444445557653    45788999999999999986654


Q ss_pred             -HHHHH---HHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          192 -ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       192 -~~vi~---ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                       ..++.   ++.+.++++++|++.+...   ...+.+   .++ .++.++. +|..++..   ....       |...++
T Consensus        74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~  139 (301)
T 3cky_A           74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK---VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIM  139 (301)
T ss_dssp             HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH---HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEE
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEE
Confidence             55775   7888899999998765432   223332   122 2466764 46443332   2222       343444


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      +..   +++..+.+..+++.+|..
T Consensus       140 ~~g---~~~~~~~v~~ll~~~g~~  160 (301)
T 3cky_A          140 VGA---SEAVFEKIQPVLSVIGKD  160 (301)
T ss_dssp             EES---CHHHHHHHHHHHHHHEEE
T ss_pred             ECC---CHHHHHHHHHHHHHhcCC
Confidence            443   578899999999999964

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.21  E-value=6.5e-11  Score=107.07  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |+|+|||+|+||.++|++|.+.      |++|++..+. +++..+...+.|+.      .+.+++++++|+||+++|++.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~   68 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV   68 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred             CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence            5899999999999999999998      9987664331 33334444445664      266788999999999999998


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCch
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ..+.+.++.+.+++  +|+++++..
T Consensus        69 ~~~~~~~~~~~~~~--~vi~~s~~~   91 (264)
T 1i36_A           69 ALGAARRAGRHVRG--IYVDINNIS   91 (264)
T ss_dssp             HHHHHHHHHTTCCS--EEEECSCCC
T ss_pred             HHHHHHHHHHhcCc--EEEEccCCC
Confidence            87777788888887  888887764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.20  E-value=7.6e-11  Score=113.38  Aligned_cols=153  Identities=14%  Similarity=0.181  Sum_probs=103.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec---C-------CCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---~-------~~~~~~~e~i~~ADv  181 (313)
                      |+|+|||.|+||.++|..|.+.      |++|.++.+. ++..+...+.|....   +       ....+++++++++|+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~-~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv  102 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYE-SDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD  102 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSC-HHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred             CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence            7999999999999999999999      9988766654 333333333332100   0       013578889999999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEE-ecCchhh------hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLG------HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI  254 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid-~~Gv~l~------~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~  254 (313)
                      ||+++|++...++++++.++++++++|++ +.|+...      .+.+   .++...-.+...|+.....    .      
T Consensus       103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----~------  169 (356)
T 3k96_A          103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----A------  169 (356)
T ss_dssp             EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH----H------
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH----H------
Confidence            99999999888999999999999998775 4566542      2332   2333223466777653322    2      


Q ss_pred             cCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       255 ~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                        +|.+..++... .+.+..+.+++++...|++
T Consensus       170 --~g~pt~~via~-~~~~~~~~v~~lf~~~~~r  199 (356)
T 3k96_A          170 --ANLPTAVSLAS-NNSQFSKDLIERLHGQRFR  199 (356)
T ss_dssp             --TTCCEEEEEEE-SCHHHHHHHHHHHCCSSEE
T ss_pred             --cCCCeEEEEec-CCHHHHHHHHHHhCCCCee
Confidence              24455444443 3467788888888877754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.20  E-value=3.5e-11  Score=119.85  Aligned_cols=147  Identities=17%  Similarity=0.080  Sum_probs=101.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhhc---cCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETIS---GSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~~~~~~~e~i~---~ADvIi  183 (313)
                      ++|||||+|.||.++|++|.+.      |++|.+.++.. +..+...+     .|+..    ..+++++++   ++|+|+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~-~~~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi   71 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTV-SKVDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII   71 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSST-HHHHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence            6899999999999999999999      99887666554 33444444     45543    457888874   899999


Q ss_pred             Ecccch-hHHHHHHHHHhcCCCCcEEEEecC-chh--hhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCC
Q 021356          184 LLISDA-AQADNYEKIFSCMKPNSILGLSHG-FLL--GHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG  258 (313)
Q Consensus       184 LavP~~-a~~~vi~ei~~~mk~gaiLid~~G-v~l--~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G  258 (313)
                      +++|+. ...++++++.+.+++|++|++++. ...  ..+.+   .+ ..++.|+ .+|...+..   ....       |
T Consensus        72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~---~l~~~g~~~v-~~pv~g~~~---~a~~-------g  137 (482)
T 2pgd_A           72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR---DLKDKGILFV-GSGVSGGED---GARY-------G  137 (482)
T ss_dssp             ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEE-EEEEESHHH---HHHH-------C
T ss_pred             EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEe-CCCCCCChh---hhcc-------C
Confidence            999996 566799999999999999998753 321  12221   11 1356777 457433322   1122       3


Q ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          259 INSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      . . +.+..+  +++.+.++.+++.+|.+
T Consensus       138 ~-~-i~~gg~--~e~~~~v~~ll~~~g~~  162 (482)
T 2pgd_A          138 P-S-LMPGGN--KEAWPHIKAIFQGIAAK  162 (482)
T ss_dssp             C-E-EEEEEC--TTTHHHHHHHHHHHSCB
T ss_pred             C-e-EEeCCC--HHHHHHHHHHHHHhhhh
Confidence            4 3 344443  57889999999999975

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.19  E-value=2.9e-11  Score=110.25  Aligned_cols=146  Identities=13%  Similarity=0.091  Sum_probs=98.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |++|+|||+|.||.++++.|.+       |++|.+.++. ++..+...+.|+..    .. .+++++++|+|++++|...
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~-~~~~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~   67 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRT-FEKALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR   67 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSS-THHHHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCC-HHHHHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence            4789999999999999999853       5677665554 33334444446543    22 6678899999999999886


Q ss_pred             -HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCC-CCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021356          191 -QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV  265 (313)
Q Consensus       191 -~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp  265 (313)
                       ..++++++.+.+++|++|++++....   ..+.+   .++ .++.|+.. |..+++.   ....       |...+++.
T Consensus        68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-p~~~~~~---~~~~-------g~~~~~~~  133 (289)
T 2cvz_A           68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE---RLREKGVTYLDA-PVSGGTS---GAEA-------GTLTVMLG  133 (289)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEEC-CEESHHH---HHHH-------TCEEEEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEe-cCCCChh---HHhh-------CCeEEEEC
Confidence             55688889899999999998765432   22322   222 25677775 7544432   2222       34444443


Q ss_pred             ccCCCHHHHHHHHHHHHHcCCC
Q 021356          266 HQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       266 ~~d~~~ea~e~a~~L~~alG~~  287 (313)
                       .  +++..+.++.++ .+|..
T Consensus       134 -~--~~~~~~~~~~ll-~~g~~  151 (289)
T 2cvz_A          134 -G--PEEAVERVRPFL-AYAKK  151 (289)
T ss_dssp             -S--CHHHHHHHGGGC-TTEEE
T ss_pred             -C--CHHHHHHHHHHH-hhcCC
Confidence             2  478889999999 99863

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.18  E-value=7.4e-11  Score=117.51  Aligned_cols=148  Identities=16%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhcc---CCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~~~~~~~e~i~~---ADv  181 (313)
                      |+|||||+|.||.++|++|.+.      |++|.+.++..++..+...+.|       +..    ..+++|++++   +|+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv   71 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK   71 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred             CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence            6899999999999999999999      9988766665333333333335       332    4578888874   999


Q ss_pred             EEEcccch-hHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccC
Q 021356          182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEING  256 (313)
Q Consensus       182 IiLavP~~-a~~~vi~ei~~~mk~gaiLid~~-Gv~--l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g  256 (313)
                      |++++|+. ...++++++.+.+++|++|++.+ |..  ...+.+   .+ ..++.|+. +|...+..   ....      
T Consensus        72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~---~l~~~g~~~v~-~pv~gg~~---~a~~------  138 (478)
T 1pgj_A           72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ---QLEAAGLRFLG-MGISGGEE---GARK------  138 (478)
T ss_dssp             EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH---HHHTTTCEEEE-EEEESHHH---HHHH------
T ss_pred             EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH---HHHHCCCeEEE-eeccCCHH---HHhc------
Confidence            99999996 56678999999999999999875 432  222222   11 23566764 46433332   1222      


Q ss_pred             CCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          257 AGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       257 ~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                       |. . +.+..  ++++.+.++.+++.+|..
T Consensus       139 -g~-~-i~~gg--~~~~~~~v~~ll~~~g~~  164 (478)
T 1pgj_A          139 -GP-A-FFPGG--TLSVWEEIRPIVEAAAAK  164 (478)
T ss_dssp             -CC-E-EEEEE--CHHHHHHHHHHHHHHSCB
T ss_pred             -CC-e-EeccC--CHHHHHHHHHHHHHhccc
Confidence             34 3 33444  378899999999999975

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.18  E-value=3.4e-10  Score=118.24  Aligned_cols=152  Identities=12%  Similarity=0.071  Sum_probs=107.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG  170 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~  170 (313)
                      |++|+|||+|.||.++|..+.+.      |++|++.++. ++..+.+.+           .|...+.         ....
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~  384 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVN-EKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL  384 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSS-HHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence            58999999999999999999999      9998766554 333332211           2321000         0123


Q ss_pred             CHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021356          171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL  247 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l  247 (313)
                      +. +.+++||+||+++|.+...  .++.++.+.++++++|+ .++++.+..+..   .+...-+|++.|+--|...    
T Consensus       385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~----  456 (725)
T 2wtb_A          385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI----  456 (725)
T ss_dssp             SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred             CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence            44 6789999999999988743  47889999999999986 456666655543   2222347999999555443    


Q ss_pred             HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                                +....+.+...++++.++.+..+++.+|..
T Consensus       457 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~  486 (725)
T 2wtb_A          457 ----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKT  486 (725)
T ss_dssp             ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred             ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCE
Confidence                      234557788888999999999999999954

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.17  E-value=1.4e-11  Score=120.24  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=102.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+|.| ++|||||+|+||+++|+.|+.+      |++|++.++..     .....+.     ...+++|++++||+|++|
T Consensus       115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-----~~~~~~~-----~~~sl~ell~~aDiV~l~  177 (381)
T 3oet_A          115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPPR-----AARGDEG-----DFRTLDELVQEADVLTFH  177 (381)
T ss_dssp             CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH-----HHTTCCS-----CBCCHHHHHHHCSEEEEC
T ss_pred             CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCh-----HHhccCc-----ccCCHHHHHhhCCEEEEc
Confidence            58999 9999999999999999999999      99986654421     1111222     246899999999999999


Q ss_pred             ccchhH----HH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021356          186 ISDAAQ----AD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK  252 (313)
Q Consensus       186 vP~~a~----~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~  252 (313)
                      +|.+..    +. +++ +.++.||+|++|++++ |-.      +..+++ +......++|...+|.. ..   .++..  
T Consensus       178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV~e~EP~~-~~---~L~~~--  250 (381)
T 3oet_A          178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNA-GQPLSVVLDVWEGEPDL-NV---ALLEA--  250 (381)
T ss_dssp             CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTSC-CH---HHHHH--
T ss_pred             CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCCeEEEeeccccCCCC-cc---hhhhC--
Confidence            998876    54 665 7889999999999876 432      122322 22223356777778843 22   25542  


Q ss_pred             cccCCCceEEEEecc-CCCHHHHHH-----HHHHHHHcCC
Q 021356          253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS  286 (313)
Q Consensus       253 e~~g~G~~~iitp~~-d~~~ea~e~-----a~~L~~alG~  286 (313)
                             +.++|||- -.+.++.+.     +..+...++.
T Consensus       251 -------~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~  283 (381)
T 3oet_A          251 -------VDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGR  283 (381)
T ss_dssp             -------SSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -------CEEECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence                   35789986 334454443     3455666664

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.17  E-value=8.3e-11  Score=104.65  Aligned_cols=154  Identities=17%  Similarity=0.160  Sum_probs=98.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ++|+|||+|.||.++++.|.+.      |++|++..++ .+..+...+.|+..     .+.+++++++|+|++++|++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~   96 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRN-PKRTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY   96 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESS-HHHHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred             CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence            7999999999999999999998      9887766554 33333333346552     2778899999999999998766


Q ss_pred             HHHHHHHHhcCCCCcEEEEec-Cchhhhhh-------hcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          192 ADNYEKIFSCMKPNSILGLSH-GFLLGHLQ-------SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~-Gv~l~~~~-------~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      .++++ +.+.+ ++++|++++ |.....+.       .....++ +.++++.+ |......   +..+-. .  |...++
T Consensus        97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~-n~~~~~~---~~~~~~-~--g~~~~~  166 (215)
T 2vns_A           97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAF-NVISAWT---LQAGPR-D--GNRQVP  166 (215)
T ss_dssp             GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEEC-TTBCHHH---HHTCSC-S--SCCEEE
T ss_pred             HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEecc-ccccHhH---hccccc-C--CceeEE
Confidence            56664 44445 788888754 55433221       0001334 35788876 4433221   111211 1  223323


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      ....  ++++.+.++++++.+|..-+
T Consensus       167 ~~g~--~~~~~~~v~~ll~~~G~~~~  190 (215)
T 2vns_A          167 ICGD--QPEAKRAVSEMALAMGFMPV  190 (215)
T ss_dssp             EEES--CHHHHHHHHHHHHHTTCEEE
T ss_pred             EecC--CHHHHHHHHHHHHHcCCceE
Confidence            3332  47899999999999997443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.17  E-value=8.6e-12  Score=114.77  Aligned_cols=151  Identities=11%  Similarity=0.082  Sum_probs=90.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEE-EEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|+|||+|+||.++++.|.+.       ++|+ +.++ +++..+. +.+.|. .    ..+++++++++|+||+++|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~-~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~   69 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSR-SIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDR   69 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----------CCCEECS-SHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTT
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeC-CHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChH
Confidence            6899999999999999988642       2443 4444 3333333 334554 2    446778889999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEecc-----CCCchhHHHHHHhcccccCCCceEEE
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~G-v~l~~~~~~~~~l~~~i~vV~vhP-----n~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ...+++.++.   +++++|+++++ +....++.   .     .+...||     ++|...  +.+        .+.++.+
T Consensus        70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~-----~~~~~~p~~~~~g~~~~~--~~~--------~~~~~~~  128 (276)
T 2i76_A           70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKK---S-----GRASIHPNFSFSSLEKAL--EMK--------DQIVFGL  128 (276)
T ss_dssp             THHHHHTTTC---CSSCCEEECCSSSCGGGGCS---S-----SEEEEEECSCC--CTTGG--GCG--------GGCCEEE
T ss_pred             HHHHHHHHhc---cCCCEEEECCCCCcHHHHHH---h-----hccccchhhhcCCCchhH--HHh--------CCCeEEE
Confidence            8877776654   68888888764 45544432   1     2334444     333221  111        2345544


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCceeecChhHHHhhc
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSD  301 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~~d  301 (313)
                      +..    ++..+.++.+++.+|. .++..+.+++...|
T Consensus       129 ~~~----~~~~~~~~~l~~~lG~-~~~~v~~~~~~~~~  161 (276)
T 2i76_A          129 EGD----ERGLPIVKKIAEEISG-KYFVIPSEKKKAYH  161 (276)
T ss_dssp             CCC----TTTHHHHHHHHHHHCS-CEEECCGGGHHHHH
T ss_pred             EeC----hHHHHHHHHHHHHhCC-CEEEECHHHHHHHH
Confidence            442    3558899999999995 56666655544333

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.12  E-value=1.8e-10  Score=108.38  Aligned_cols=144  Identities=13%  Similarity=0.049  Sum_probs=93.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc-----------eecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-----------TEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-----------~~~~~~~~~~~e~i~~AD  180 (313)
                      ++|+|||+|+||.++|.+|.+.      |++|.++.|..+. .+...+.|.           ..    ..+.++ ++++|
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD   82 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED   82 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred             CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence            8999999999999999999999      9998777665332 333333342           21    346777 89999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec-Cchhhhhh---hc-ccCCCCCccEEEeccCCCchhHHHHHHhccccc
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLLGHLQ---SI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN  255 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv~l~~~~---~~-~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~  255 (313)
                      +||+++|++...++++++.+   ++++|+++. |+.....+   +. ...++ ....++.+|+.+...       +    
T Consensus        83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~-------~----  147 (335)
T 1z82_A           83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV-------A----  147 (335)
T ss_dssp             EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH-------H----
T ss_pred             EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH-------h----
Confidence            99999999887788877655   788888665 76431111   00 00223 234678999875543       1    


Q ss_pred             CCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       256 g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                       .|....++...+ +   .+.+..++...|..
T Consensus       148 -~g~~~~~~~g~~-~---~~~~~~ll~~~g~~  174 (335)
T 1z82_A          148 -KKLPTAVTLAGE-N---SKELQKRISTEYFR  174 (335)
T ss_dssp             -TTCCEEEEEEET-T---HHHHHHHHCCSSEE
T ss_pred             -CCCceEEEEEeh-h---HHHHHHHhCCCCEE
Confidence             244332333322 1   56778888887754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.09  E-value=1.8e-10  Score=106.20  Aligned_cols=166  Identities=16%  Similarity=0.108  Sum_probs=101.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHH-CCceecC--CC-------cCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~-~G~~~~~--~~-------~~~~~e~i~~AD  180 (313)
                      |+|+|||+|+||.++|..|.+.. ....| ++|.+..|  ++..+...+ .|+....  +.       ..+..+.++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~-~~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D   85 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRA-AATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD   85 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHH-HHTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCc-cccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence            68999999999999999997540 00003 67776665  344444555 6765321  00       012345678999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEE-ecCchh-hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc-cccCC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK-EINGA  257 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid-~~Gv~l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~-e~~g~  257 (313)
                      +||+++|+....++++++.+.++++++|++ ..|+.. ..+.+   .+++. .+++.+|+.+.....    .|. +..+.
T Consensus        86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~----pg~~~~~~~  157 (317)
T 2qyt_A           86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSA----PGLITLEAD  157 (317)
T ss_dssp             EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEE----TTEEEEEEE
T ss_pred             EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcC----CCEEEEcCC
Confidence            999999999998899999999998888775 567754 34443   44543 556665543332210    000 00123


Q ss_pred             CceEEEEec-cCCCHHHHHHHHHHHHHcCCCce
Q 021356          258 GINSSFAVH-QDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       258 G~~~iitp~-~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      |...++... ...+.+.. .+..++...|....
T Consensus       158 g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~  189 (317)
T 2qyt_A          158 RELFYFGSGLPEQTDDEV-RLAELLTAAGIRAY  189 (317)
T ss_dssp             EEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEE
T ss_pred             CceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCE
Confidence            333334443 33445666 78899999996533

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.07  E-value=1.9e-09  Score=102.69  Aligned_cols=154  Identities=12%  Similarity=0.129  Sum_probs=115.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC----------CCc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN----------GTL  169 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~----------~~~  169 (313)
                      +.+|+|||.|.||..+|..+...      |++|++.+.. ++..+.           ..+.|.....          ..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~   78 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIE-PRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC   78 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc
Confidence            47999999999999999999999      9998776543 322221           1222322100          113


Q ss_pred             CCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021356          170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR  246 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~  246 (313)
                      .+++|++++||+|+=++|-+-..  +++.++-+.++|++||. .++++.+..+.+   .....-+|++.||--|.+.+  
T Consensus        79 ~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~m--  153 (319)
T 3ado_A           79 TNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYYI--  153 (319)
T ss_dssp             CCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTTC--
T ss_pred             cchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCcccc--
Confidence            57788999999999999987664  49999999999999986 788888877765   33344689999997777764  


Q ss_pred             HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021356          247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF  288 (313)
Q Consensus       247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~  288 (313)
                                  .-.=+.++..++++.++.+.++.+.+|..-
T Consensus       154 ------------~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p  183 (319)
T 3ado_A          154 ------------PLVELVPHPETSPATVDRTHALMRKIGQSP  183 (319)
T ss_dssp             ------------CEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             ------------chHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence                        112267899999999999999999999554

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.06  E-value=1.4e-09  Score=101.67  Aligned_cols=154  Identities=20%  Similarity=0.150  Sum_probs=103.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~e~i~~ADv  181 (313)
                      |+|+|||.|+||.++|..|.+.      |.+|.+..|..   .+..++.|+....  +        ...+. +.++.+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~   72 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL   72 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence            7899999999999999999998      98887776653   3455567764211  0        01244 44789999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEec------cCCCchhHHHHHHhccc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE  253 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~~~~~~l~~~i~vV~vh------Pn~pg~~~r~lf~~G~e  253 (313)
                      ||+++|+....++++++.+.++++++|+ ...|+. ...+.+   .+|++ ++++..      -.+|+...         
T Consensus        73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~---------  139 (312)
T 3hn2_A           73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVH---------  139 (312)
T ss_dssp             EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEE---------
T ss_pred             EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEE---------
Confidence            9999999999999999999999998765 677885 444544   44542 454433      33444441         


Q ss_pred             ccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       254 ~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      ..|.|. ..|......+.+..+.+.+++...|....
T Consensus       140 ~~~~g~-~~ig~~~~~~~~~~~~l~~~l~~~g~~~~  174 (312)
T 3hn2_A          140 HLGAGR-IILGEFLPRDTGRIEELAAMFRQAGVDCR  174 (312)
T ss_dssp             ECEEEE-EEEEESSCCCSHHHHHHHHHHHHTTCCEE
T ss_pred             ECCCCe-EEEecCCCCccHHHHHHHHHHHhCCCCcE
Confidence            012233 33555444445667778888888886543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.06  E-value=3.1e-10  Score=102.97  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---Cc--eecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~--~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      |+|+|||+|+||.++|..|.+.      |++|.+..|..+...+ ....   |.  .. .... +..+.++++|+||+++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~-~~~~~~~~~d~vi~~v   71 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTA-NDPDFLATSDLLLVTL   71 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEE-SCHHHHHTCSEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeee-cCccccCCCCEEEEEe
Confidence            5899999999999999999999      9988777665432211 1111   11  00 0012 2346788999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEE-ecCchh-hhhhhcccCCCCCccEEEecc------CCCchhHHHHHHhcccccCCC
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSIGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGKEINGAG  258 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid-~~Gv~l-~~~~~~~~~l~~~i~vV~vhP------n~pg~~~r~lf~~G~e~~g~G  258 (313)
                      |+....++++++.+.++++++|++ ..|+.. ..+.+   .+++   ++..++      .+| ...         ..+.|
T Consensus        72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~---~~~g~~~~~~~~~~p-~~~---------~~~~g  135 (291)
T 1ks9_A           72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQP---LLMGTTTHAARRDGN-VII---------HVANG  135 (291)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSC---EEEEEECCEEEEETT-EEE---------EEECC
T ss_pred             cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCC---eEEEEEeEccEEcCC-EEE---------Eeccc
Confidence            999988899999999999998775 567643 23333   3343   333222      122 110         01245


Q ss_pred             ceEEEEeccCCCHHHHHHHHHHHHHcCCCcee
Q 021356          259 INSSFAVHQDVDGRATNVALGWSVALGSPFTF  290 (313)
Q Consensus       259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~  290 (313)
                      . ..+++... +.+..+.++.+++.+|.....
T Consensus       136 ~-~~i~~~~~-~~~~~~~~~~ll~~~g~~~~~  165 (291)
T 1ks9_A          136 I-THIGPARQ-QDGDYSYLADILQTVLPDVAW  165 (291)
T ss_dssp             C-EEEEESSG-GGTTCTHHHHHHHTTSSCEEE
T ss_pred             c-eEEccCCC-CcchHHHHHHHHHhcCCCCee
Confidence            5 44665332 356678889999999965433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.05  E-value=8.4e-11  Score=117.71  Aligned_cols=111  Identities=16%  Similarity=0.190  Sum_probs=84.6

Q ss_pred             cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      +.++.+. +++| |... ...++.| ++|||||+|.||.++|+.++.+      |++|++.++. ......+...|+.  
T Consensus       236 ~~~~~~~-l~~g-w~r~-~~~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~-~~~~~~a~~~g~~--  302 (479)
T 1v8b_A          236 VYGCRHS-LPDG-LMRA-TDFLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN--  302 (479)
T ss_dssp             HHHHHHH-HHHH-HHHH-HCCCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE--
T ss_pred             hHhHHHH-Hhhh-hhhc-cccccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCC-hhhHHHHHHcCCE--
Confidence            5566666 6667 8532 2358999 9999999999999999999999      9997665543 3333345667775  


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~  215 (313)
                         ..++++++++||+|++++.   ...+++ +.++.||+|++|++++...
T Consensus       303 ---~~~l~ell~~aDiVi~~~~---t~~lI~~~~l~~MK~gailiNvgrg~  347 (479)
T 1v8b_A          303 ---VVTLDEIVDKGDFFITCTG---NVDVIKLEHLLKMKNNAVVGNIGHFD  347 (479)
T ss_dssp             ---ECCHHHHTTTCSEEEECCS---SSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             ---ecCHHHHHhcCCEEEECCC---hhhhcCHHHHhhcCCCcEEEEeCCCC
Confidence               3589999999999999963   234564 7888999999999887543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.01  E-value=1.2e-10  Score=116.90  Aligned_cols=110  Identities=19%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      +.+..+. +++| |... ...++.| ++++|||+|.||.++|+.++.+      |++|++.++. ......+...|+.  
T Consensus       256 ~~~~~~~-l~~g-w~~~-~g~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~-~~~~~~a~~~G~~--  322 (494)
T 3d64_A          256 LYGCRES-LVDG-IKRA-TDVMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEID-PICALQAAMEGYR--  322 (494)
T ss_dssp             HHHHHTT-HHHH-HHHH-HCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSC-HHHHHHHHTTTCE--
T ss_pred             hHhhhhh-hhhh-hhhc-cccccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-hHhHHHHHHcCCE--
Confidence            3345555 5555 7432 2368999 9999999999999999999999      9997666544 3323345556776  


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                         ..++++++++||+|++++.   ...+++ +.++.||+|++|++++..
T Consensus       323 ---~~~l~ell~~aDiVi~~~~---t~~lI~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          323 ---VVTMEYAADKADIFVTATG---NYHVINHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             ---ECCHHHHTTTCSEEEECSS---SSCSBCHHHHHHCCTTEEEEECSSS
T ss_pred             ---eCCHHHHHhcCCEEEECCC---cccccCHHHHhhCCCCcEEEEcCCC
Confidence               3489999999999999983   234554 788899999999987654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.01  E-value=6.8e-09  Score=101.69  Aligned_cols=159  Identities=13%  Similarity=0.139  Sum_probs=100.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD  171 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~  171 (313)
                      |+|+|||+|.||.++|..|.+.      |++|++. +.+++..+...+                   .| +.    ...+
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~----~t~~   69 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGV-DVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS----GTTD   69 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE----EESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCEEEEE-ECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceE----EeCC
Confidence            5899999999999999999998      9987555 444443333322                   23 22    1357


Q ss_pred             HHhhhccCCEEEEcccchh----------HHHHHHHHHhcCCC---CcEEEEecCchhhh----h----hhc-ccCCCCC
Q 021356          172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLGH----L----QSI-GLDFPKN  229 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a----------~~~vi~ei~~~mk~---gaiLid~~Gv~l~~----~----~~~-~~~l~~~  229 (313)
                      .++++++||+||+++|...          ..++++++.+++++   +++|++.+++....    +    ... +..+..+
T Consensus        70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~  149 (436)
T 1mv8_A           70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD  149 (436)
T ss_dssp             HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred             HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence            7788999999999998655          66788899999999   99998876553211    1    110 1111112


Q ss_pred             ccEEEeccCC--CchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       230 i~vV~vhPn~--pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                      . .+...|..  ++....+++..        ...++...   ++++.+.+.++++.+|.. +..+++
T Consensus       150 ~-~v~~~Pe~~~~G~~~~~~~~~--------~~iv~G~~---~~~~~~~~~~l~~~~~~~-v~~~~~  203 (436)
T 1mv8_A          150 F-GVGTNPEFLRESTAIKDYDFP--------PMTVIGEL---DKQTGDLLEEIYRELDAP-IIRKTV  203 (436)
T ss_dssp             B-EEEECCCCCCTTSHHHHHHSC--------SCEEEEES---SHHHHHHHHHHHTTSSSC-EEEEEH
T ss_pred             E-EEEECcccccccccchhccCC--------CEEEEEcC---CHHHHHHHHHHHhccCCC-EEcCCH
Confidence            2 34456633  34443333321        12323332   478889999999999963 443544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.98  E-value=4.1e-09  Score=104.37  Aligned_cols=154  Identities=14%  Similarity=0.080  Sum_probs=98.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-------------------CCceecCCCcCCH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AGFTEENGTLGDI  172 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G~~~~~~~~~~~  172 (313)
                      |+|+|||+|.||.++|..|.+.      |++|++.+ .+++..+...+                   .|-..   ...+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D-~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~---~t~d~   72 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL------GANVRCID-TDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLR---FGTEI   72 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEE---EESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc------CCEEEEEE-CCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEE---EECCH
Confidence            7999999999999999999999      99876554 44433333222                   22111   13578


Q ss_pred             HhhhccCCEEEEcccch----------hHHHHHHHHHhcCCCCcEEEEecCchh---hh----hhhcccCCCCCcc-EEE
Q 021356          173 YETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLL---GH----LQSIGLDFPKNIG-VIA  234 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~----------a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~----~~~~~~~l~~~i~-vV~  234 (313)
                      ++++++||+||+++|..          ...++++++.++++++++|++.+.+..   ..    +++.......+.+ .+.
T Consensus        73 ~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~  152 (450)
T 3gg2_A           73 EQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIA  152 (450)
T ss_dssp             HHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             HHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEE
Confidence            88999999999999877          667788999999999999998876522   11    1111111111122 355


Q ss_pred             eccCCCc--hhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021356          235 VCPKGMG--PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       235 vhPn~pg--~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~  286 (313)
                      ..|....  ....+...         .+.++.-..  ++++.+.++.+++.++.
T Consensus       153 ~~Pe~a~eG~~~~~~~~---------p~~ivvG~~--~~~~~~~~~~l~~~~~~  195 (450)
T 3gg2_A          153 SNPEFLKEGNAIDDFMK---------PDRVVVGVD--SDRARELITSLYKPMLL  195 (450)
T ss_dssp             ECCCCCCTTSHHHHHHS---------CSCEEEEES--SHHHHHHHHHHHTTTCC
T ss_pred             echhhhcccchhhhccC---------CCEEEEEcC--CHHHHHHHHHHHHHHhc
Confidence            6674332  22222221         223222222  36889999999999886

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.94  E-value=2.1e-09  Score=99.91  Aligned_cols=94  Identities=17%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .++.| ++|+|||+|.||.++|+.++.+      |++|++.++.. +..+.+.+.|+...  ...+++++++++|+|++|
T Consensus       151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~  220 (293)
T 3d4o_A          151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARES-DLLARIAEMGMEPF--HISKAAQELRDVDVCINT  220 (293)
T ss_dssp             SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred             CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence            57899 9999999999999999999999      99887666553 33334455675420  023678899999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+..+.   ++.+..||++++|++++
T Consensus       221 ~p~~~i~---~~~l~~mk~~~~lin~a  244 (293)
T 3d4o_A          221 IPALVVT---ANVLAEMPSHTFVIDLA  244 (293)
T ss_dssp             CSSCCBC---HHHHHHSCTTCEEEECS
T ss_pred             CChHHhC---HHHHHhcCCCCEEEEec
Confidence            9985332   24567899999999887

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.93  E-value=4.7e-09  Score=98.36  Aligned_cols=155  Identities=20%  Similarity=0.161  Sum_probs=100.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC---C--------CcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~--------~~~~~~e~i~~AD  180 (313)
                      |+|+|||.|.||.++|..|.+.      |.+|.+..|..   .+...+.|+....   +        ...+.+++.+.+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D   73 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD   73 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence            7999999999999999999998      99887777653   2444455643211   0        1235566666999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEec------cCCCchhHHHHHHhcc
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGK  252 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~~~~~~l~~~i~vV~vh------Pn~pg~~~r~lf~~G~  252 (313)
                      +||+++|.....++++++.+.++++++|+ ...|+. ...+.+   .+|.+ .++...      -..|+...     .+ 
T Consensus        74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~-----~~-  143 (320)
T 3i83_A           74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIW-----HQ-  143 (320)
T ss_dssp             EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEE-----EE-
T ss_pred             EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEE-----EC-
Confidence            99999999999999999999999988765 677885 344544   44543 444322      12223221     11 


Q ss_pred             cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       253 e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                         +.|. ..|......+.+..+.+.+++...|.+..
T Consensus       144 ---~~~~-~~ig~~~~~~~~~~~~l~~~l~~~~~~~~  176 (320)
T 3i83_A          144 ---AYGR-LMLGNYPGGVSERVKTLAAAFEEAGIDGI  176 (320)
T ss_dssp             ---EEEE-EEEEESSSCCCHHHHHHHHHHHHTTSCEE
T ss_pred             ---CCCE-EEEecCCCCccHHHHHHHHHHHhCCCCce
Confidence               1222 23444333334566777788888886543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.93  E-value=1.6e-09  Score=100.96  Aligned_cols=95  Identities=21%  Similarity=0.332  Sum_probs=72.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ..++.| ++|+|||+|.||.++|+.++.+      |++|++.++.. +..+.+.+.|+...  ...++++++++||+|++
T Consensus       152 ~~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          152 DYTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSS-AHLARITEMGLVPF--HTDELKEHVKDIDICIN  221 (300)
T ss_dssp             SSCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCEEE--EGGGHHHHSTTCSEEEE
T ss_pred             CCCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHCCCeEE--chhhHHHHhhCCCEEEE
Confidence            368999 9999999999999999999999      99887766553 33333445565310  02478899999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++|+..+.   ++.++.||++++|++++
T Consensus       222 ~~p~~~i~---~~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          222 TIPSMILN---QTVLSSMTPKTLILDLA  246 (300)
T ss_dssp             CCSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred             CCChhhhC---HHHHHhCCCCCEEEEEe
Confidence            99984322   35678899999999876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.92  E-value=4.9e-09  Score=98.15  Aligned_cols=95  Identities=20%  Similarity=0.221  Sum_probs=73.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecC----------CCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~----------~~~~~~~e~i~~AD  180 (313)
                      |+|+|||+|.||..+|..|.+.      |++|.+..+. ++..+...+. |+...+          ....+.+++++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   77 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   77 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence            7999999999999999999998      9987665544 3333333333 321100          01347788899999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|++++|.....++++++.+.++++++|++..|
T Consensus        78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~  110 (359)
T 1bg6_A           78 VILIVVPAIHHASIAANIASYISEGQLIILNPG  110 (359)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred             EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            999999999998899999999999998887766

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.89  E-value=6.1e-09  Score=103.08  Aligned_cols=167  Identities=14%  Similarity=0.095  Sum_probs=99.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH---------------HH----CCceecCCCcCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---------------RA----AGFTEENGTLGD  171 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A---------------~~----~G~~~~~~~~~~  171 (313)
                      +|+|+|||+|.||.++|..|.+.    +.|++|++.+ .+++..+..               .+    .++..    ..+
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d-~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~   75 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVD-VNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN   75 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEEC-SCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEE-CCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence            47999999999999999999876    2247775554 433333221               11    23321    347


Q ss_pred             HHhhhccCCEEEEcccchh---------------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhc-ccCCCCCcc-
Q 021356          172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSI-GLDFPKNIG-  231 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a---------------~~~vi~ei~~~mk~gaiLid~~Gv~l~---~~~~~-~~~l~~~i~-  231 (313)
                      .++++++||+||+++|...               ..++++++.+++++|++|++.+.+...   .+... .......++ 
T Consensus        76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~  155 (467)
T 2q3e_A           76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNL  155 (467)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEE
T ss_pred             HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCe
Confidence            7888999999999997543               245677888999999999987654321   11110 001111233 


Q ss_pred             EEEeccCC--CchhHHHHHHhcccccCCCceEEEEe-ccCCCHHHHHHHHHHHHHc-CCCceeecCh
Q 021356          232 VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAV-HQDVDGRATNVALGWSVAL-GSPFTFATTL  294 (313)
Q Consensus       232 vV~vhPn~--pg~~~r~lf~~G~e~~g~G~~~iitp-~~d~~~ea~e~a~~L~~al-G~~~~~~tT~  294 (313)
                      .|...|..  ++....+++..        ...++.. ....++++.+.++.+++.+ |...+..++.
T Consensus       156 ~V~~~Pe~~~~G~~~~d~~~~--------~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~  214 (467)
T 2q3e_A          156 QVLSNPEFLAEGTAIKDLKNP--------DRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT  214 (467)
T ss_dssp             EEEECCCCCCTTSHHHHHHSC--------SCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECH
T ss_pred             EEEeCHHHhhcccchhhccCC--------CEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCH
Confidence            34566643  44444344431        1232332 2223578899999999999 6544555554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.88  E-value=9.5e-09  Score=96.90  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~e~i~~ADvI  182 (313)
                      |+|+|||.|.||.++|..|.+.      |++|.+..|.  +..+...+.|+.....         ...+.++ ++++|+|
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V   74 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV   74 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence            8999999999999999999998      9988777663  3445556677643110         0235555 6899999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEE-EecCc
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF  214 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv  214 (313)
                      |+++|.....++++++.+.++++++|+ ...|+
T Consensus        75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            999999988889999999999998876 56785

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.86  E-value=8.6e-09  Score=102.63  Aligned_cols=168  Identities=14%  Similarity=0.087  Sum_probs=97.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee---c------------C-CCcCCHHhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---E------------N-GTLGDIYET  175 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~---~------------~-~~~~~~~e~  175 (313)
                      |+|+|||+|.||.++|..|.+.    +.|++|++ ++.+++..+... .|...   .            . ....+..++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~-~D~~~~~v~~l~-~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~   83 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHK----CPHITVTV-VDMNTAKIAEWN-SDKLPIYEPGLDEIVFAARGRNLFFSSDIPKA   83 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHH----CTTSEEEE-ECSCHHHHHHHT-SSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCCCEEEE-EECCHHHHHHHH-CCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH
Confidence            7999999999999999999876    22467655 444443333222 21100   0            0 012466788


Q ss_pred             hccCCEEEEcccchh---------------HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccC-CC--CCcc-EE
Q 021356          176 ISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLD-FP--KNIG-VI  233 (313)
Q Consensus       176 i~~ADvIiLavP~~a---------------~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~-l~--~~i~-vV  233 (313)
                      +++||+||+++|...               ..++++++.++++++++|++.+.+..   ..+...-.. .+  ...+ +|
T Consensus        84 ~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v  163 (481)
T 2o3j_A           84 IAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQV  163 (481)
T ss_dssp             HHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEE
T ss_pred             hhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEE
Confidence            899999999987532               45677889999999999998765532   111110000 11  1233 36


Q ss_pred             EeccC--CCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHHHHHHHHcCC-CceeecC
Q 021356          234 AVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVALGS-PFTFATT  293 (313)
Q Consensus       234 ~vhPn--~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a~~L~~alG~-~~~~~tT  293 (313)
                      ..+|.  .++....+++..        ...++.... ..++++.+.++.+++.+|. ..+..++
T Consensus       164 ~~~Pe~~~~G~a~~~~~~~--------~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d  219 (481)
T 2o3j_A          164 LSNPEFLAEGTAMKDLANP--------DRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTN  219 (481)
T ss_dssp             EECCCCCCTTCHHHHHHSC--------SCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEE
T ss_pred             EeCcccccccchhhcccCC--------CEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecC
Confidence            78884  344444343331        123232221 2223678889999999985 3344433

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.84  E-value=4.2e-09  Score=104.27  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=74.4

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      -..|.| ++|+|||+|.||.++|+.|+.+      |++|++.+ +++.....+...|+.     ..+++|++++||+|++
T Consensus       206 g~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D-~~p~~a~~A~~~G~~-----~~sL~eal~~ADVVil  272 (436)
T 3h9u_A          206 DVMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTE-VDPINALQAAMEGYQ-----VLLVEDVVEEAHIFVT  272 (436)
T ss_dssp             CCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCE-----ECCHHHHTTTCSEEEE
T ss_pred             CCcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEC-CChhhhHHHHHhCCe-----ecCHHHHHhhCCEEEE
Confidence            367899 9999999999999999999999      99976554 444444556778876     3589999999999998


Q ss_pred             cccchhHHHHHH-HHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYE-KIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~-ei~~~mk~gaiLid~~G  213 (313)
                      +....   .+++ +.++.||+|++|++++-
T Consensus       273 t~gt~---~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          273 TTGND---DIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             CSSCS---CSBCTTTGGGCCTTEEEEECSS
T ss_pred             CCCCc---CccCHHHHhhcCCCcEEEEeCC
Confidence            65432   2454 77889999999998764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.81  E-value=4.5e-08  Score=96.83  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC------------------CceecCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------------GFTEENG  167 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~------------------G~~~~~~  167 (313)
                      ++..- |+|+|||+|.||.++|..|. .      |++|++ ++.+++..+...+.                  ++.    
T Consensus        32 r~~~~-mkIaVIGlG~mG~~lA~~La-~------G~~V~~-~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~----   98 (432)
T 3pid_A           32 RGSEF-MKITISGTGYVGLSNGVLIA-Q------NHEVVA-LDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFR----   98 (432)
T ss_dssp             ---CC-CEEEEECCSHHHHHHHHHHH-T------TSEEEE-ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEE----
T ss_pred             cccCC-CEEEEECcCHHHHHHHHHHH-c------CCeEEE-EecCHHHhhHHhccCCccccccHHHHHhhccCCeE----
Confidence            44444 89999999999999999875 4      788755 44444433332221                  222    


Q ss_pred             CcCCHHhhhccCCEEEEcccch-----------hHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          168 TLGDIYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       168 ~~~~~~e~i~~ADvIiLavP~~-----------a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ...++++++++||+||+++|..           .+..+++.+.+ +++|++|++.+.+.
T Consensus        99 ~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~  156 (432)
T 3pid_A           99 ATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP  156 (432)
T ss_dssp             EESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred             EEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            1357889999999999999976           34557788889 99999999988764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.81  E-value=6.1e-09  Score=103.58  Aligned_cols=93  Identities=25%  Similarity=0.281  Sum_probs=75.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..|.| ++++|||+|.||..+|+.++.+      |++|++..+. +.....+...|+.     ..+++|++++||+|+++
T Consensus       243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~d-p~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a  309 (464)
T 3n58_A          243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVD-PICALQAAMDGFE-----VVTLDDAASTADIVVTT  309 (464)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred             CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-cchhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence            57999 9999999999999999999999      9998766543 3334456667876     34899999999999998


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                      +..   ..+++ +.+..||+|++|+.++-+
T Consensus       310 tgt---~~lI~~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          310 TGN---KDVITIDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             CSS---SSSBCHHHHHHSCTTEEEEECSSS
T ss_pred             CCC---ccccCHHHHhcCCCCeEEEEcCCC
Confidence            653   33664 788999999999987754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.78  E-value=3.2e-08  Score=92.81  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~e~i~~ADvI  182 (313)
                      ++|+|||.|.||.++|..|.+.      |++|.+. ++ ++..+...+.|......         ...+.+ .++++|+|
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v   90 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQGADLV   90 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTTCSEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCCCCEE
Confidence            9999999999999999999998      9988766 44 34445555556432100         012443 46899999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhh
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS  221 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l-~~~~~  221 (313)
                      |+++|.....++++++.++++++++|+ ...|+.. ..+.+
T Consensus        91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~  131 (318)
T 3hwr_A           91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS  131 (318)
T ss_dssp             EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred             EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence            999999998899999999999998766 6788865 34433

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.75  E-value=3.7e-09  Score=97.55  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=70.8

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +++| ++|+|||.|.||.++++.|.+.      |.+|.+.+|..++..+.+.+.|+..    ..+++++++++|+||+++
T Consensus       126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at  194 (275)
T 2hk9_A          126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT  194 (275)
T ss_dssp             TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred             CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence            6789 9999999999999999999998      8877766665333333333445442    237778899999999999


Q ss_pred             cchhHHH---HHHHHHhcCCCCcEEEEecC
Q 021356          187 SDAAQAD---NYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       187 P~~a~~~---vi~ei~~~mk~gaiLid~~G  213 (313)
                      |+....+   .+.  .+.++++++|+|+..
T Consensus       195 p~~~~~~~~~~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          195 SVGLKDEDPEIFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             STTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred             CCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence            9886432   222  356899999998876

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.75  E-value=1.5e-07  Score=91.51  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=66.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee-c------------C-CCcCCHHhhhc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-E------------N-GTLGDIYETIS  177 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~------------~-~~~~~~~e~i~  177 (313)
                      |+|+|||+|.||..+|..|.+       |++|++. +.+++..+...+.+... +            . ....+..++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~-d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~   72 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIV-DILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK   72 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-------TSEEEEE-CSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-------CCEEEEE-ECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence            689999999999999999853       6776544 44444343333333210 0            0 01246678889


Q ss_pred             cCCEEEEcccch-----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       178 ~ADvIiLavP~~-----------a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +||+||+++|+.           ...++++++.+ ++++++|++.+.+
T Consensus        73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~  119 (402)
T 1dlj_A           73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI  119 (402)
T ss_dssp             HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred             CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence            999999999987           36678888989 9999999884443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.75  E-value=3.5e-08  Score=98.32  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-------Cc------------eecCCCcC
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GF------------TEENGTLG  170 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G~------------~~~~~~~~  170 (313)
                      |-|+|+|||+|.||.++|..|.+.      |++|++. +.+++..+...+.       |.            ..   ...
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~-d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~---~tt   76 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCL-DVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLR---FST   76 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EEC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhC------CCEEEEE-ECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEE---EEC
Confidence            449999999999999999999999      9987655 4444433333322       11            10   134


Q ss_pred             CHHhhhccCCEEEEcccc----------hhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          171 DIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~----------~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +.++++++||+||+++|.          +...++++++.++++++++|++.+++
T Consensus        77 d~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv  130 (478)
T 2y0c_A           77 DIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV  130 (478)
T ss_dssp             CHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             CHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence            677889999999999997          67777999999999999999987775

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.74  E-value=1.1e-08  Score=101.24  Aligned_cols=93  Identities=23%  Similarity=0.254  Sum_probs=74.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..|.| ++++|||+|.||..+|+.|+.+      |++|++.++ ++.....+...|+.     ..+++++++++|+|+++
T Consensus       216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~-dp~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a  282 (435)
T 3gvp_A          216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEI-DPICALQACMDGFR-----LVKLNEVIRQVDIVITC  282 (435)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred             ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeC-ChhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence            47899 9999999999999999999999      999766554 34334456778875     34899999999999996


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                       +  ....+++ +.+..||+|++|++++-.
T Consensus       283 -t--gt~~lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          283 -T--GNKNVVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             -S--SCSCSBCHHHHHHSCTTEEEEECSST
T ss_pred             -C--CCcccCCHHHHHhcCCCcEEEEecCC
Confidence             2  2234675 788999999999987643

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.73  E-value=1.9e-08  Score=96.70  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             CEEEEEcccchHHHHHHHHHh-chhhhcCCcEEEEEec--CCcccHHHHHH-CCcee----cCC-----------CcCCH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLR--KGSRSFAEARA-AGFTE----ENG-----------TLGDI  172 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r--~~~~s~~~A~~-~G~~~----~~~-----------~~~~~  172 (313)
                      |+|+|||.|.||.++|..|.+ .      |++|.+..+  ++++..+.+.+ .|...    .++           ...++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             ceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            799999999999999999966 6      888876651  22233333222 23100    000           13467


Q ss_pred             HhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +++++++|+||+++|.....++++++.++++++++|+..
T Consensus        77 ~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           77 EIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL  115 (404)
T ss_dssp             HHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred             HHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence            788999999999999999999999999999999988864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.70  E-value=5.7e-08  Score=96.28  Aligned_cols=151  Identities=14%  Similarity=0.112  Sum_probs=95.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD  171 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~  171 (313)
                      -+|+|||+|.||.++|..|.+.      |++|+++++. ++..+...+                   .| +.    ...+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~-~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~----~ttd   77 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKD-ARKIELLHQNVMPIYEPGLDALVASNVKAGRLS----FTTD   77 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEE----EESC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHhcCCCCccCCCHHHHHHhhcccCCEE----EECC
Confidence            6899999999999999999999      9998666554 333332222                   12 12    1357


Q ss_pred             HHhhhccCCEEEEcccch-----------hHHHHHHHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEE
Q 021356          172 IYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVI  233 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~-----------a~~~vi~ei~~~mk~gaiLid~~Gv~l-------~~~~~~~~~l~~~i~vV  233 (313)
                      +.+++++||+||+++|..           ...++++.+.+++++|++|++.+++..       ..+.+.  ....+ -.|
T Consensus        78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d-~~v  154 (446)
T 4a7p_A           78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSG-AKV  154 (446)
T ss_dssp             HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSC-CEE
T ss_pred             HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCC-ceE
Confidence            889999999999997644           356688899999999999999887632       112221  11122 245


Q ss_pred             EeccCCCchh--HHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          234 AVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       234 ~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      ...|......  +.++..         .+.++.-..  ++++.+.++.+++.++..
T Consensus       155 ~~~Pe~a~eG~a~~d~~~---------p~~ivvG~~--~~~~~~~~~~ly~~~~~~  199 (446)
T 4a7p_A          155 VSNPEFLREGAAIEDFKR---------PDRVVVGTE--DEFARQVMREIYRPLSLN  199 (446)
T ss_dssp             EECCCCCCTTSHHHHHHS---------CSCEEEECS--CHHHHHHHHHHHCSCC--
T ss_pred             EeCcccccccchhhhccC---------CCEEEEeCC--cHHHHHHHHHHHHHHhcC
Confidence            6667432221  111111         223222222  367888888999887753

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.70  E-value=2.9e-07  Score=96.51  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=112.9

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC------CCcCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------GTLGD  171 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~------~~~~~  171 (313)
                      .-|++|||||.|.||..+|..+...      |++|++.+.. ++..+.+.+           .+...+.      -...+
T Consensus       314 ~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~  386 (742)
T 3zwc_A          314 QPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS  386 (742)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred             ccccEEEEEcccHHHHHHHHHHHhC------CCchhcccch-HhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence            3469999999999999999999998      9998766544 322222211           0000000      00123


Q ss_pred             HHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      ..+.+++||+||=++|-+...  +++.++-+.++|++||. .+++..+..+.+   .....-+|++.|+--|.+.|    
T Consensus       387 ~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m----  459 (742)
T 3zwc_A          387 STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVM----  459 (742)
T ss_dssp             CGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTC----
T ss_pred             cHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCC----
Confidence            335588999999999987764  39999999999999986 788888877764   23334589999997777663    


Q ss_pred             HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                .-.=|.++..++++.++.+.++.+.+|..-+
T Consensus       460 ----------~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV  490 (742)
T 3zwc_A          460 ----------RLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  490 (742)
T ss_dssp             ----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             ----------ceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence                      1222678899999999999999999996543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.67  E-value=2.1e-07  Score=91.94  Aligned_cols=162  Identities=12%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-------------
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-------------  175 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-------------  175 (313)
                      .| .++.|||+|.||..+|..|.+.      |++|++++ .+++..+.. ..|....  ....++|+             
T Consensus        10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D-~~~~kv~~L-~~g~~pi--~epgl~~ll~~~~~~g~l~~t   78 (431)
T 3ojo_A           10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVD-INQQTIDKL-QNGQISI--EEPGLQEVYEEVLSSGKLKVS   78 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHH-HTTCCSS--CCTTHHHHHHHHHHTTCEEEE
T ss_pred             cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEE-CCHHHHHHH-HCCCCCc--CCCCHHHHHHhhcccCceEEe
Confidence            57 9999999999999999999999      99876554 444333322 2332100  00011111             


Q ss_pred             --hccCCEEEEcccchh------------HHHHHHHHHhcCCCCcEEEEecCchh---hhh-----hhcccCCCCCccEE
Q 021356          176 --ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLL---GHL-----QSIGLDFPKNIGVI  233 (313)
Q Consensus       176 --i~~ADvIiLavP~~a------------~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~-----~~~~~~l~~~i~vV  233 (313)
                        +++||+||+++|...            +....+.+.+++++|++|++.+++..   ..+     +..+.....+ -.+
T Consensus        79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d-~~v  157 (431)
T 3ojo_A           79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGED-IYL  157 (431)
T ss_dssp             SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTT-EEE
T ss_pred             CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCC-eEE
Confidence              468999999999664            34456789999999999999887632   111     1111111112 245


Q ss_pred             Eecc--CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       234 ~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                      ...|  -.++....+...         ...++ ...  ++++.+.++.+++.++...+..+++
T Consensus       158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~  208 (431)
T 3ojo_A          158 VHCPERVLPGKILEELVH---------NNRII-GGV--TKACIEAGKRVYRTFVQGEMIETDA  208 (431)
T ss_dssp             EECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHTTTCCSCEEEEEH
T ss_pred             EECCCcCCCcchhhcccC---------CCEEE-EeC--CHHHHHHHHHHHHHHhCCcEEeCCH
Confidence            6777  344554433332         23433 332  4789999999999998655544443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.65  E-value=6.1e-08  Score=81.36  Aligned_cols=110  Identities=7%  Similarity=-0.030  Sum_probs=77.4

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||+    |.||..++++|++.      |++|+..+.+. +.     -.|...    ..++.|+.+..|++++++|
T Consensus        15 ~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~-~~-----i~G~~~----~~s~~el~~~vDlvii~vp   78 (138)
T 1y81_A           15 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNY-DE-----IEGLKC----YRSVRELPKDVDVIVFVVP   78 (138)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-SE-----ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred             CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCC-Ce-----ECCeee----cCCHHHhCCCCCEEEEEeC
Confidence            89999999    99999999999999      99854433332 11     146553    4588898889999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS  243 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~  243 (313)
                      +....++++++.+ ...+.++++.++..-...+.   .-..++.+|  .||+++-.
T Consensus        79 ~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~  128 (138)
T 1y81_A           79 PKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEYS--FGRCIMVE  128 (138)
T ss_dssp             HHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEEE--CSCCHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEEE--cCCcceEE
Confidence            9888889988766 45567777777663211111   101256665  48876654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.63  E-value=1.5e-08  Score=84.02  Aligned_cols=91  Identities=20%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      .| ++|+|||.|.||.++++.|+..      |++|.+..+..++..+.+.+.|...  ....+.+++++++|+|+.++|.
T Consensus        20 ~~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~Divi~at~~   90 (144)
T 3oj0_A           20 GG-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEY--VLINDIDSLIKNNDVIITATSS   90 (144)
T ss_dssp             CC-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEE--EECSCHHHHHHTCSEEEECSCC
T ss_pred             cC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCce--EeecCHHHHhcCCCEEEEeCCC
Confidence            37 9999999999999999999888      9886666665444444566666432  1245788999999999999997


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEec
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ...  ++.  .+.+++|.+++|++
T Consensus        91 ~~~--~~~--~~~l~~g~~vid~~  110 (144)
T 3oj0_A           91 KTP--IVE--ERSLMPGKLFIDLG  110 (144)
T ss_dssp             SSC--SBC--GGGCCTTCEEEECC
T ss_pred             CCc--Eee--HHHcCCCCEEEEcc
Confidence            631  222  25678899988875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.63  E-value=3.4e-07  Score=73.60  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=63.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCHHh----hhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYE----TISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e----~i~~ADvIiLav  186 (313)
                      |+|.|||+|.+|..+++.|.+.      |++|++..+. ++..+... ..|+....+...+.+.    .++++|+|++++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence            7999999999999999999998      9887766554 33333333 3464210111223222    267899999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+......+.++...++++.+|..+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~  105 (140)
T 1lss_A           78 GKEEVNLMSSLLAKSYGINKTIARISEI  105 (140)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred             CCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence            9876655555666667777776655443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.63  E-value=8.2e-08  Score=96.45  Aligned_cols=92  Identities=22%  Similarity=0.329  Sum_probs=75.1

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      .+.| ++|+|||+|.||..+|+.++..      |++|++. ++++...+.+.+.|+.     ..+++++++++|+|++++
T Consensus       271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~-d~~~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at  337 (494)
T 3ce6_A          271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVT-EIDPINALQAMMEGFD-----VVTVEEAIGDADIVVTAT  337 (494)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred             CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence            6889 9999999999999999999999      9986554 4445555677888885     347889999999999999


Q ss_pred             cchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYE-KIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv  214 (313)
                      +...   ++. +.++.||+|.+|++++..
T Consensus       338 gt~~---~i~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          338 GNKD---IIMLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             SSSC---SBCHHHHHHSCTTCEEEECSSS
T ss_pred             CCHH---HHHHHHHHhcCCCcEEEEeCCC
Confidence            7654   344 677889999999988754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.62  E-value=2.6e-07  Score=92.42  Aligned_cols=161  Identities=21%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcc---cHHHHHH---------------------CCceec
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AGFTEE  165 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~---s~~~A~~---------------------~G~~~~  165 (313)
                      +|+|+|||+|.||..+|..|.+.     +|+ +|++.++..++   ..+...+                     .|... 
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~-   91 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE-   91 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE-
Confidence            48999999999999999998764     267 87665554330   2221111                     22221 


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchh------------HHHHHHHHHhcCCCCcEEEEecCchh------hh--h-hhccc
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLL------GH--L-QSIGL  224 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a------------~~~vi~ei~~~mk~gaiLid~~Gv~l------~~--~-~~~~~  224 (313)
                        ..++ .+++++||+||+++|...            +....+.+.+++++|++|++.+++..      ..  + +..+.
T Consensus        92 --~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~  168 (478)
T 3g79_A           92 --CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGL  168 (478)
T ss_dssp             --EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCC
T ss_pred             --EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCC
Confidence              0234 688999999999998652            23456789999999999998887632      11  1 11111


Q ss_pred             CCCCCccEEEeccC--CCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCceeecC
Q 021356          225 DFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATT  293 (313)
Q Consensus       225 ~l~~~i~vV~vhPn--~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al-G~~~~~~tT  293 (313)
                      ....++ .+...|.  .++....+...         ...++ ...  +++..+.++.+++.+ +...+..++
T Consensus       169 ~~~~d~-~v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~  227 (478)
T 3g79_A          169 KAGEDF-ALAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMS  227 (478)
T ss_dssp             CBTTTB-EEEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEE
T ss_pred             CcCCce-eEEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCC
Confidence            111222 4667773  34554433332         12333 332  357779999999999 765444443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.59  E-value=3.2e-08  Score=90.20  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=67.8

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +++|  +|+|||+|.||.++++.|.+.      |++|.+.+|..++..+.+.+.|..     ..+++++ +++|+|++++
T Consensus       114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t  179 (263)
T 2d5c_A          114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT  179 (263)
T ss_dssp             CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred             CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence            5677  899999999999999999998      887777666543333444444543     2367788 9999999999


Q ss_pred             cchhHH---HHHHHHHhcCCCCcEEEEecC
Q 021356          187 SDAAQA---DNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       187 P~~a~~---~vi~ei~~~mk~gaiLid~~G  213 (313)
                      |+....   ..+.  .+.+++|++|+|++-
T Consensus       180 p~~~~~~~~~~l~--~~~l~~g~~viD~~~  207 (263)
T 2d5c_A          180 RVGLEDPSASPLP--AELFPEEGAAVDLVY  207 (263)
T ss_dssp             STTTTCTTCCSSC--GGGSCSSSEEEESCC
T ss_pred             CCCCCCCCCCCCC--HHHcCCCCEEEEeec
Confidence            998543   2232  467899999998763

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.56  E-value=8.1e-08  Score=90.28  Aligned_cols=93  Identities=12%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEEEc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+ ++|+|||+|.||.+++++|.+.     .|+ +|.++++..++..+.+.+.+  +..    ..+++++++++|+|+++
T Consensus       134 ~~-~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~a  203 (312)
T 2i99_A          134 SS-EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITV  203 (312)
T ss_dssp             TC-CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEEC
T ss_pred             CC-cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEE
Confidence            45 8999999999999999998763     155 66666665444444455545  442    45889999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +|..  ..++..  +.+++|++|+++++..
T Consensus       204 tp~~--~~v~~~--~~l~~g~~vi~~g~~~  229 (312)
T 2i99_A          204 TLAT--EPILFG--EWVKPGAHINAVGASR  229 (312)
T ss_dssp             CCCS--SCCBCG--GGSCTTCEEEECCCCS
T ss_pred             eCCC--CcccCH--HHcCCCcEEEeCCCCC
Confidence            9953  223332  6789999999987664

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.55  E-value=2.3e-07  Score=86.73  Aligned_cols=110  Identities=21%  Similarity=0.162  Sum_probs=76.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC------cCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT------LGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~------~~~~~e~i~~ADvIiLa  185 (313)
                      |+|+|||.|+||.++|..|. .      |.+|.+..|. +...+...+.|+......      .....+.+..+|+||++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~-~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila   74 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRR-QEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT   74 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHh-c------CCceEEEECC-HHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence            79999999999999999999 8      9888766654 333344455676531100      00013467889999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCchhh-hhhhcccCCCCCccEEE
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~-~~~~~~~~l~~~i~vV~  234 (313)
                      +|++...++++++.+. .++++|....|+... .+.+   .+|.+ +++.
T Consensus        75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~  119 (307)
T 3ego_A           75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYV  119 (307)
T ss_dssp             CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEE
T ss_pred             eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEE
Confidence            9999999999888764 566666678899753 4443   44543 4443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.52  E-value=7e-08  Score=93.12  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             hhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCcee--cCCCcC
Q 021356           94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLG  170 (313)
Q Consensus        94 v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~~~~  170 (313)
                      .++|+|....+...+.| ++++|||.|.||..+++.++..      |++|++.+++ .+..+.+.+ .|...  ......
T Consensus       152 ~~~g~~~~~~~~~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~-~~~l~~~~~~~g~~~~~~~~~~~  223 (377)
T 2vhw_A          152 TQGGRGVLMGGVPGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDIN-IDKLRQLDAEFCGRIHTRYSSAY  223 (377)
T ss_dssp             GGTSCCCCTTCBTTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSSEEEECCHH
T ss_pred             hcCCCcccccCCCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHhcCCeeEeccCCHH
Confidence            44555532223457899 9999999999999999999999      9987655544 443444444 45320  000122


Q ss_pred             CHHhhhccCCEEEEccc--chhHHHH-HHHHHhcCCCCcEEEEec
Q 021356          171 DIYETISGSDLVLLLIS--DAAQADN-YEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP--~~a~~~v-i~ei~~~mk~gaiLid~~  212 (313)
                      ++++.++++|+||.+++  ......+ .++.++.||+|.+|++++
T Consensus       224 ~l~~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          224 ELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             HHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             HHHHHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            56788899999999774  3322233 357788999999999886

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.49  E-value=1.9e-07  Score=78.78  Aligned_cols=111  Identities=11%  Similarity=0.031  Sum_probs=75.6

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|||+    |.||..++++|++.      |++|+..+.... +.     -.|...    ..++.|+....|++++++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v   78 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR   78 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence            88999999    89999999999999      988544333220 11     146653    457888888999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS  243 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~  243 (313)
                      |+....++++++.+ ...+.++++.+.+.- .+.+  ..-..++.++  .||+++-.
T Consensus        79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~-~l~~--~a~~~Gi~~i--gpnc~g~~  129 (145)
T 2duw_A           79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINE-QAAV--LAREAGLSVV--MDRCPAIE  129 (145)
T ss_dssp             CSTHHHHHHHHHHH-HTCCEEECCTTCCCH-HHHH--HHHTTTCEEE--CSCCHHHH
T ss_pred             CHHHHHHHHHHHHH-cCCCEEEEcCChHHH-HHHH--HHHHcCCEEE--cCCeeeEE
Confidence            99888889987766 455667777655532 2211  0112356665  48776654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.48  E-value=1.6e-07  Score=91.54  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=72.1

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC---------CC---------
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT---------  168 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---------~~---------  168 (313)
                      -+++ .+++|||.|.||...++.++..      |.+|++.+++ ....+.+.+.|....+         +.         
T Consensus       181 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~-~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          181 TVKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVR-PEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             EECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS-GGGHHHHHHTTCEECCCC-------------CHHHH
T ss_pred             CcCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence            3577 8999999999999999999999      9987655544 4555667776653200         00         


Q ss_pred             ---cCCHHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          169 ---LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       169 ---~~~~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                         ..++++.++++|+||.++  |......++ ++..+.||||++|+|++
T Consensus       253 ~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          253 AQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             hhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence               124568999999999875  543334445 58889999999999986

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.47  E-value=1.3e-08  Score=94.31  Aligned_cols=97  Identities=12%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a  190 (313)
                      |+|+|||.|+||.++|..|.+.      |.+|.+..|..+. .+.....|..... ...+..+.+ +.+|+|++++|+..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~~~-~~~~~~~~~~~~~D~vilavk~~~   74 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPAQD-IVVKGYEDVTNTFDVIIIAVKTHQ   74 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCCEE-EEEEEGGGCCSCEEEEEECSCGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeeccc-eecCchHhcCCCCCEEEEeCCccC
Confidence            7899999999999999999998      8888777765321 1111122321000 011334444 88999999999999


Q ss_pred             HHHHHHHHHhcCCCCcEEE-EecCchh
Q 021356          191 QADNYEKIFSCMKPNSILG-LSHGFLL  216 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLi-d~~Gv~l  216 (313)
                      ..++++++.+.++++++|+ ...|+..
T Consensus        75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           75 LDAVIPHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred             HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence            9999999999998887655 6778854

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.37  E-value=8e-07  Score=79.65  Aligned_cols=80  Identities=24%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a  190 (313)
                      ++|||||+|.||..++++|.+.      |++++...+++.+.    .+   .     ..++++++ .++|+|++++|+..
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~~   62 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVRGEH----EK---M-----VRGIDEFLQREMDVAVEAASQQA   62 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCCC----TT---E-----ESSHHHHTTSCCSEEEECSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecCcch----hh---h-----cCCHHHHhcCCCCEEEECCCHHH
Confidence            5899999999999999999877      88875444443321    11   2     34888988 79999999999998


Q ss_pred             HHHHHHHHHhcCCCCcEEEEec
Q 021356          191 QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +.+++...   ++.|+.|++..
T Consensus        63 ~~~~~~~~---l~~G~~vv~~~   81 (236)
T 2dc1_A           63 VKDYAEKI---LKAGIDLIVLS   81 (236)
T ss_dssp             HHHHHHHH---HHTTCEEEESC
T ss_pred             HHHHHHHH---HHCCCcEEEEC
Confidence            87766543   45687777654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.34  E-value=5e-07  Score=88.75  Aligned_cols=98  Identities=18%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC-------------CCc----
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL----  169 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------------~~~----  169 (313)
                      .+.+ .+|+|||.|.+|...++.++..      |.+|++.+++ ....+.+.+.|...-.             +..    
T Consensus       187 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~-~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s  258 (405)
T 4dio_A          187 TVPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVR-PAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS  258 (405)
T ss_dssp             EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-TTHHHHHHHTTCEECCCCC-----------------
T ss_pred             CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCceeecccccccccccccchhhhcc
Confidence            4567 8999999999999999999999      9987665554 4445566666653100             000    


Q ss_pred             --------CCHHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          170 --------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       170 --------~~~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                              .++++++++||+||.++  |......++ ++....||||++|+|++
T Consensus       259 ~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          259 GEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             hhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence                    14678899999999875  544444455 48889999999999986

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.27  E-value=5.8e-06  Score=68.07  Aligned_cols=78  Identities=21%  Similarity=0.252  Sum_probs=54.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADvIiLavP  187 (313)
                      ++|.|||+|.+|..+++.|++.      |++|++.++ +++..+.+.+.|+..-.+...+.+.    -+.++|+|++++|
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~-~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIET-SRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP   80 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT------TCCEEEEES-CHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence            4789999999999999999999      998765554 4555666667776421111222221    2578999999999


Q ss_pred             chhHHHHHH
Q 021356          188 DAAQADNYE  196 (313)
Q Consensus       188 ~~a~~~vi~  196 (313)
                      +......+-
T Consensus        81 ~~~~n~~~~   89 (140)
T 3fwz_A           81 NGYEAGEIV   89 (140)
T ss_dssp             CHHHHHHHH
T ss_pred             ChHHHHHHH
Confidence            887655333

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.25  E-value=2e-06  Score=82.94  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---------------
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---------------  170 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---------------  170 (313)
                      ..+.| ++++|||.|.+|...++.++..      |.+|++.+++ ....+.+.+.|.....-...               
T Consensus       168 ~~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~-~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~  239 (384)
T 1l7d_A          168 GTVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM  239 (384)
T ss_dssp             EEECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC------------------
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeecccccccccccccchhhc
Confidence            47899 9999999999999999999999      9986655544 44455666677532000000               


Q ss_pred             ----------CHHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          171 ----------DIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       171 ----------~~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                                .+.+.++++|+||.++  |......++ ++.+..||+|.+|+|++
T Consensus       240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence                      1667889999999888  432222344 56778899999999886

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.24  E-value=1.2e-06  Score=85.48  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=70.6

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-----------------
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-----------------  169 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-----------------  169 (313)
                      .+.| ++|+|||.|.+|...++.++..      |++|++.+++ ....+.+.+.|.....-..                 
T Consensus       169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~  240 (401)
T 1x13_A          169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA  240 (401)
T ss_dssp             EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-GGGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred             CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence            5889 9999999999999999999999      9986655544 4445556667754200000                 


Q ss_pred             ------CCHHhhhccCCEEEEc--ccchhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       170 ------~~~~e~i~~ADvIiLa--vP~~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                            .++.++++++|+||.+  +|......++ ++.+..||+|.+|+|++
T Consensus       241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence                  0256788899999999  5532223444 46778899999999887

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.24  E-value=4.6e-06  Score=69.61  Aligned_cols=103  Identities=15%  Similarity=0.079  Sum_probs=63.8

Q ss_pred             cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCH---Hhh-hcc
Q 021356          104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISG  178 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~---~e~-i~~  178 (313)
                      .++.+.+ ++|.|||+|.+|..+++.|++.      |.+|++..+.. +..+.+. +.|...-.+...+.   .++ +.+
T Consensus        13 ~~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~-~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~   84 (155)
T 2g1u_A           13 MSKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNE-YAFHRLNSEFSGFTVVGDAAEFETLKECGMEK   84 (155)
T ss_dssp             ----CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCG-GGGGGSCTTCCSEEEESCTTSHHHHHTTTGGG
T ss_pred             hhcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHhcCCCcEEEecCCCHHHHHHcCccc
Confidence            3577888 9999999999999999999999      99877666543 3333333 34532101111222   223 678


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCC-cEEEEecCc
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPN-SILGLSHGF  214 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~Gv  214 (313)
                      +|+|++++++......+..+...+.+. .++..+.+.
T Consensus        85 ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           85 ADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             CCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            999999999987666555555544333 344444443

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.23  E-value=3.3e-06  Score=78.73  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=58.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC--cEEEEEecCCcccHHHHHHCC---------ceecCCCcCCHHhhhccC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS  179 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~~~G---------~~~~~~~~~~~~e~i~~A  179 (313)
                      |++|+|||.|.||.++|..|...      |  .+|.+.++..+.....+.+.+         ...   ...+. +.+++|
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a   70 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA   70 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence            47999999999999999999988      7  577665554322222222211         111   02355 788999


Q ss_pred             CEEEEcccchhH--------------------HHHHHHHHhcCCCCcEEEE
Q 021356          180 DLVLLLISDAAQ--------------------ADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       180 DvIiLavP~~a~--------------------~~vi~ei~~~mk~gaiLid  210 (313)
                      |+||+++|....                    .++++++.++. |+++|+.
T Consensus        71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~  120 (309)
T 1hyh_A           71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVV  120 (309)
T ss_dssp             SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred             CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE
Confidence            999999997653                    34566666655 5555543

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.21  E-value=1e-06  Score=84.60  Aligned_cols=98  Identities=19%  Similarity=0.176  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .. ++|+|||+|.||.++++++....    ...+|.+++|..++..+.+.+.    |+..  ....+.+++++++|+|++
T Consensus       128 ~~-~~v~iIGaG~~a~~~a~al~~~~----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NA-RKMALIGNGAQSEFQALAFHKHL----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TC-CEEEEECCSTTHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEE
T ss_pred             cC-CeEEEECCcHHHHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEEE
Confidence            45 89999999999999999986530    0235666666544444444442    5321  114588999999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ++|......++.  .+.+++|++|+++++..
T Consensus       201 aTps~~~~pvl~--~~~l~~G~~V~~vgs~~  229 (350)
T 1x7d_A          201 VTADKAYATIIT--PDMLEPGMHLNAVGGDC  229 (350)
T ss_dssp             CCCCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred             eccCCCCCceec--HHHcCCCCEEEECCCCC
Confidence            999863222332  25789999999888753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.21  E-value=1e-05  Score=65.94  Aligned_cols=91  Identities=16%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh----hccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----ISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~----i~~ADvIiLavP  187 (313)
                      ++|.|+|+|.+|.++++.|.+.      |++|++.++ +++..+.+.+.|+....+...+.+.+    +.++|+|++++|
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDK-SKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS   79 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT------TCCEEEEES-CHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCeEEEEEC-CHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence            7899999999999999999999      998766554 45555566666753211122233221    468999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEE
Q 021356          188 DAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +......+-.....+....++.
T Consensus        80 ~~~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           80 DDEFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             CHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CHHHHHHHHHHHHHhCCceEEE
Confidence            6655444434333333333444

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.18  E-value=4.8e-06  Score=78.14  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      ++|||||+|.||..++++|++.     .+++++...+++.+. .+.+.+.|...    ..+.+++++  +.|+|++++|+
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~   75 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred             eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence            6899999999999999999875     156665445554443 34455667542    568999998  89999999999


Q ss_pred             hhHHHHHHHHHhc
Q 021356          189 AAQADNYEKIFSC  201 (313)
Q Consensus       189 ~a~~~vi~ei~~~  201 (313)
                      ..+.+++.+.+..
T Consensus        76 ~~h~~~~~~al~~   88 (344)
T 3euw_A           76 STHVDLITRAVER   88 (344)
T ss_dssp             GGHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHc
Confidence            9998877765543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.17  E-value=3.2e-06  Score=78.16  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|||||+|.||.. ++..|++.     .+.+++...+++++. .+.+.+.|+..    ..+.++++++.|+|++++|+.
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~   77 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE   77 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred             CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence            68999999999996 88888774     166766445554433 34455667652    568999999999999999999


Q ss_pred             hHHHHHHHHHh
Q 021356          190 AQADNYEKIFS  200 (313)
Q Consensus       190 a~~~vi~ei~~  200 (313)
                      .+.+++.+.+.
T Consensus        78 ~h~~~~~~al~   88 (308)
T 3uuw_A           78 THYEIIKILLN   88 (308)
T ss_dssp             GHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99887776554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.17  E-value=2.5e-06  Score=80.73  Aligned_cols=91  Identities=15%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++++|||.|.||.++++.|++..     +. +|.+++|.  +..+.+.+    .|+..+  .. +.++++++||+|+.+|
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT  191 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARF-----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT  191 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred             cEEEEECccHHHHHHHHHHHHhC-----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence            89999999999999999998740     33 57667666  44444433    355321  14 8999999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      |...  .++.  .+.++||++|+++++.+.
T Consensus       192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          192 RSTT--PLFA--GQALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             CCSS--CSSC--GGGCCTTCEEEECCCSST
T ss_pred             CCCC--cccC--HHHcCCCcEEEECCCCCC
Confidence            9752  2333  357899999999988753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.16  E-value=7.8e-06  Score=65.65  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=58.5

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-hccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-i~~ADvI  182 (313)
                      .+++ ++|.|+|+|.+|..+++.|++.      |++|++..+. ++..+...+.|...-.+...+.+   ++ +.++|+|
T Consensus         3 ~~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~v   74 (144)
T 2hmt_A            3 RIKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYV   74 (144)
T ss_dssp             ---C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred             CCcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence            4567 8999999999999999999998      8887665543 33333333334321011122332   22 6789999


Q ss_pred             EEcccch-hHHHHHHHHHhcCCCCcEEEEecC
Q 021356          183 LLLISDA-AQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       183 iLavP~~-a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++++.. .....+.+....+.+..++..+.+
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQN  106 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            9999975 332233344444555555554444

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.14  E-value=3.8e-06  Score=82.07  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--------EEEEEecCCc---ccHHHHHHC---------Ccee--cCCCc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEARAA---------GFTE--ENGTL  169 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--------~Vivg~r~~~---~s~~~A~~~---------G~~~--~~~~~  169 (313)
                      .||+|||.|..|.++|..|.+.      |.        +|.++.|..+   +........         |+..  .-...
T Consensus        35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t  108 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN  108 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence            5999999999999999999886      43        4766765432   111111111         1110  00013


Q ss_pred             CCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCc
Q 021356          170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGF  214 (313)
Q Consensus       170 ~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv  214 (313)
                      .++++++++||+|++++|.+...++++++.++++++.+++ .+-|+
T Consensus       109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence            5788999999999999999999999999999999998776 44565

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.12  E-value=6.1e-06  Score=77.02  Aligned_cols=79  Identities=20%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      ++|||||+|.||..+++.+++.     .+.+++...+.+++. .+.+.+.|+.     ..+.+++++  +.|+|++++|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~   73 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT   73 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence            6899999999999999999874     166765445554433 3445566764     458899998  89999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.+.
T Consensus        74 ~~h~~~~~~al~   85 (331)
T 4hkt_A           74 DTHADLIERFAR   85 (331)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            999887776544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.11  E-value=4.1e-05  Score=75.97  Aligned_cols=157  Identities=15%  Similarity=0.163  Sum_probs=96.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-------------------HHHHCCceecCCCcCCH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-------------------EARAAGFTEENGTLGDI  172 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-------------------~A~~~G~~~~~~~~~~~  172 (313)
                      .+|+|||+|-+|..+|..+.+.      |++| ++.|.+++..+                   ++.+.|...   ...+.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~------G~~V-~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~---~tt~~   91 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALL------GHRV-VGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLS---FAESA   91 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCEE-EEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---ECSSH
T ss_pred             CEEEEEccCHHHHHHHHHHHhC------CCcE-EEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCee---EEcCH
Confidence            7999999999999999999988      9987 56666543221                   223333221   13477


Q ss_pred             HhhhccCCEEEEcccc----------hhHHHHHHHHHhcCC---CCcEEEEec----Cch--h-h-hhhhcccCCCCCcc
Q 021356          173 YETISGSDLVLLLISD----------AAQADNYEKIFSCMK---PNSILGLSH----GFL--L-G-HLQSIGLDFPKNIG  231 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~----------~a~~~vi~ei~~~mk---~gaiLid~~----Gv~--l-~-~~~~~~~~l~~~i~  231 (313)
                      ++++++||++|+++|.          +......+.+.++|+   ++++|++-+    |+.  + . .+++   . ..+.+
T Consensus        92 ~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~---~-~~~~~  167 (444)
T 3vtf_A           92 EEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE---E-AGGVK  167 (444)
T ss_dssp             HHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT---T-TTTCC
T ss_pred             HHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH---h-CCCCC
Confidence            8899999999999872          123345567777775   577887644    332  1 1 1121   1 12333


Q ss_pred             -EEEecc--CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecCh
Q 021356          232 -VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       232 -vV~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~  294 (313)
                       .|...|  --||..++++..--         -++.-.  .++++.+.+..+.+.+....+ .+++
T Consensus       168 f~v~~~PErl~eG~a~~d~~~~~---------riViG~--~~~~a~~~~~~ly~~~~~~~~-~~~~  221 (444)
T 3vtf_A          168 FSVASNPEFLREGSALEDFFKPD---------RIVIGA--GDERAASFLLDVYKAVDAPKL-VMKP  221 (444)
T ss_dssp             CEEEECCCCCCTTSHHHHHHSCS---------CEEEEE--SSHHHHHHHHHHTTTSCSCEE-EECH
T ss_pred             ceeecCcccccCCccccccccCC---------cEEEcC--CCHHHHHHHHHHHhccCCCEE-Eech
Confidence             356666  34566666665532         212111  236788888888888875544 3444

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.11  E-value=3.9e-06  Score=80.40  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=69.4

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCcee--cCCCcCCHHhhhccCCE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDL  181 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~~~~~~~e~i~~ADv  181 (313)
                      ...++| ++++|+|.|.+|..+++.++..      |++|++.+++ ....+.+.+ .|...  ......+++++++++|+
T Consensus       161 ~~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~-~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~Dv  232 (369)
T 2eez_A          161 VPGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVN-HKRLQYLDDVFGGRVITLTATEANIKKSVQHADL  232 (369)
T ss_dssp             BTBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSE
T ss_pred             CCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCE
Confidence            357899 9999999999999999999999      9987666554 333334433 44320  00012256678899999


Q ss_pred             EEEcccchh--HHHH-HHHHHhcCCCCcEEEEecC
Q 021356          182 VLLLISDAA--QADN-YEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       182 IiLavP~~a--~~~v-i~ei~~~mk~gaiLid~~G  213 (313)
                      ||.+++...  ...+ .++.++.||+|.+|++++.
T Consensus       233 Vi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          233 LIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             EEECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             EEECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            999998653  2223 4577889999999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.11  E-value=2e-05  Score=67.15  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=59.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh--hccCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD  180 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~--i~~AD  180 (313)
                      .++.+ ++|.|||+|.||..+++.|++.     .|++|++.++ +++..+.+.+.|+..-.+...+   +.++  +.++|
T Consensus        35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~-----~g~~V~vid~-~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad  107 (183)
T 3c85_A           35 INPGH-AQVLILGMGRIGTGAYDELRAR-----YGKISLGIEI-REEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK  107 (183)
T ss_dssp             BCCTT-CSEEEECCSHHHHHHHHHHHHH-----HCSCEEEEES-CHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred             cCCCC-CcEEEECCCHHHHHHHHHHHhc-----cCCeEEEEEC-CHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence            46778 8999999999999999999763     0567665554 4444555666775311111223   2344  67899


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPN  205 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~g  205 (313)
                      +|++++|+......+-.....+.++
T Consensus       108 ~vi~~~~~~~~~~~~~~~~~~~~~~  132 (183)
T 3c85_A          108 LVLLAMPHHQGNQTALEQLQRRNYK  132 (183)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCChHHHHHHHHHHHHHCCC
Confidence            9999999876554333334444433

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.10  E-value=6.4e-06  Score=80.02  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=66.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +++| ++|+|||+|.||..+++.++..      |+ +|++.++...+..+.+.+.|....  ...++.+.+.++|+||.+
T Consensus       164 ~l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~a  234 (404)
T 1gpj_A          164 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSA  234 (404)
T ss_dssp             CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEEC
T ss_pred             cccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEc
Confidence            5789 9999999999999999999999      98 777776654333355666675320  124677888999999999


Q ss_pred             ccchhHH---HHHHH-HHh-cCCCCcEEEEec
Q 021356          186 ISDAAQA---DNYEK-IFS-CMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~---~vi~e-i~~-~mk~gaiLid~~  212 (313)
                      +|.....   +.++. +.+ .-+++.+++|++
T Consensus       235 t~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          235 TAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             CSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             cCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            9865432   33333 211 112445666765

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.09  E-value=7.8e-06  Score=76.60  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      ++|||||+|.||..+++.|++.     .+.+++...+++.+ ..+.+.+.|+..   ...+.+++++  +.|+|++++|+
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~   77 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN   77 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred             EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence            6899999999999999999884     15666544455443 344556667631   2568999997  89999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.+.
T Consensus        78 ~~h~~~~~~al~   89 (330)
T 3e9m_A           78 QGHYSAAKLALS   89 (330)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887775544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.09  E-value=6.7e-06  Score=77.28  Aligned_cols=81  Identities=23%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      ++|||||+|.||..+++.|++.     .+.+++...+.+++. .+.+.+.|+..   ...+.+++++  +.|+|++++|+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~   74 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST   74 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence            6899999999999999998774     156665445554443 34455566531   1568999998  89999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.+.
T Consensus        75 ~~h~~~~~~al~   86 (344)
T 3ezy_A           75 NTHSELVIACAK   86 (344)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             cchHHHHHHHHh
Confidence            999887765544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.08  E-value=1.4e-05  Score=75.93  Aligned_cols=80  Identities=13%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~~  189 (313)
                      .+|||||+|.||...++.+++.     .+.+++...+.+++..+.+.+.|+..    ..+.+++++  +.|+|++++|+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~   76 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND   76 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred             CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence            5799999999999999998875     15666555566555555666677653    568999987  789999999999


Q ss_pred             hHHHHHHHHHh
Q 021356          190 AQADNYEKIFS  200 (313)
Q Consensus       190 a~~~vi~ei~~  200 (313)
                      .+.++..+.+.
T Consensus        77 ~h~~~~~~al~   87 (359)
T 3e18_A           77 SHKELAISALE   87 (359)
T ss_dssp             GHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887765544

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.07  E-value=7.7e-06  Score=77.13  Aligned_cols=81  Identities=10%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      ++|||||+|.||...++.+++.    ..+.+++...+.+++. .+.+.+.|+..    ..+.+|+++  +.|+|++++|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~   85 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS   85 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence            6899999999999999998864    1266766455554443 34455667643    568999997  89999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.+.
T Consensus        86 ~~h~~~~~~al~   97 (354)
T 3q2i_A           86 GLHPTQSIECSE   97 (354)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887765543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.07  E-value=8.1e-06  Score=81.87  Aligned_cols=93  Identities=19%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..|.| ++++|+|+|.||.++|+.|++.      |.+|++..+ ++.....+...|+.     ..+.+++++.+|+|+.+
T Consensus       261 ~~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~-~~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~a  327 (488)
T 3ond_A          261 VMIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEI-DPICALQATMEGLQ-----VLTLEDVVSEADIFVTT  327 (488)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCE-----ECCGGGTTTTCSEEEEC
T ss_pred             CcccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcC-CHHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeC
Confidence            35899 9999999999999999999999      998766544 44444566677765     45788999999999987


Q ss_pred             ccchhHHHHH-HHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNY-EKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi-~ei~~~mk~gaiLid~~Gv  214 (313)
                      .....   ++ ++.+..||++++|++++..
T Consensus       328 tG~~~---vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          328 TGNKD---IIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SSCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred             CCChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence            65332   34 3578889999999988754

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.06  E-value=2.2e-05  Score=65.92  Aligned_cols=115  Identities=10%  Similarity=0.065  Sum_probs=76.5

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||.    |.+|..++++|++.      |++| +........     -.|...    ..+++|+....|++++++|
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v-~~Vnp~~~~-----i~G~~~----y~sl~~l~~~vDlvvi~vp   86 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEH------GYDV-YPVNPKYEE-----VLGRKC----YPSVLDIPDKIEVVDLFVK   86 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT------TCEE-EEECTTCSE-----ETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHC------CCEE-EEECCCCCe-----ECCeec----cCCHHHcCCCCCEEEEEeC
Confidence            89999999    79999999999999      9974 333332211     145542    4578888888999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      +....+++++..+.-. +.++ ...|..-..+.+  ..-..++++++  ||+++-...+++
T Consensus        87 ~~~~~~vv~~~~~~gi-~~i~-~~~g~~~~~l~~--~a~~~Gi~vvG--pnc~gv~~~~~~  141 (144)
T 2d59_A           87 PKLTMEYVEQAIKKGA-KVVW-FQYNTYNREASK--KADEAGLIIVA--NRCMMREHERLL  141 (144)
T ss_dssp             HHHHHHHHHHHHHHTC-SEEE-ECTTCCCHHHHH--HHHHTTCEEEE--SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CEEE-ECCCchHHHHHH--HHHHcCCEEEc--CCchhhcchhhc
Confidence            9988999987665432 3444 445543212211  01123566654  888887765554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.03  E-value=5.8e-05  Score=58.52  Aligned_cols=95  Identities=16%  Similarity=0.027  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~ADvIiL  184 (313)
                      .+ ++|.|+|.|.||.++++.|.+.      | ++|++..+. +...+.....++........   ++.++++++|+||.
T Consensus         4 ~~-~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            4 MR-WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHD-LAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             TC-EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESC-HHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             Cc-CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCC-HHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            45 8999999999999999999998      8 777666554 33334444445321111122   34467889999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++|......+++....   .|.-.+|.++.
T Consensus        76 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~  102 (118)
T 3ic5_A           76 AAPFFLTPIIAKAAKA---AGAHYFDLTED  102 (118)
T ss_dssp             CSCGGGHHHHHHHHHH---TTCEEECCCSC
T ss_pred             CCCchhhHHHHHHHHH---hCCCEEEecCc
Confidence            9998776666665433   46666666553

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.03  E-value=1.1e-05  Score=75.71  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             CEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP  187 (313)
                      .+|||||+|.||...++.++ +.     .+.+++...+++++ ..+.+.+.|+..  ....+.++++++  .|+|++++|
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~--~~~~~~~~ll~~~~~D~V~i~tp   75 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNA--TVYPNDDSLLADENVDAVLVTSW   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCC--EEESSHHHHHHCTTCCEEEECSC
T ss_pred             EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCC--eeeCCHHHHhcCCCCCEEEECCC
Confidence            58999999999999999998 42     16666544555443 334556677310  125689999876  999999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.+++.+.+.
T Consensus        76 ~~~h~~~~~~al~   88 (344)
T 3mz0_A           76 GPAHESSVLKAIK   88 (344)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             chhHHHHHHHHHH
Confidence            9999887775543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.02  E-value=1.1e-05  Score=75.95  Aligned_cols=80  Identities=10%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhh--ccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i--~~ADvIiLavP~  188 (313)
                      .+|||||+|.||..++.++++.     .+++++...+++.+. .+.+.+.|+..    ..+.++++  .+.|+|++++|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~   76 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN   76 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred             ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence            5899999999999999999875     156665455554433 34455567652    56899999  679999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.+.
T Consensus        77 ~~h~~~~~~al~   88 (354)
T 3db2_A           77 DKHAEVIEQCAR   88 (354)
T ss_dssp             TSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887765544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.02  E-value=2.2e-05  Score=68.89  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=60.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-HHHCCceecCCCcCC---HHhh-hccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~---~~e~-i~~ADvIiLav  186 (313)
                      |+|.|||+|.+|..+++.|.+.      |++|++.++. ++..+. +...|+..-.+...+   +.++ ++++|+|++++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKD-RELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence            6799999999999999999998      9987766554 333333 444554211111223   2233 67899999999


Q ss_pred             cchhHHHHHHHHHhc-CCCCcEEEEe
Q 021356          187 SDAAQADNYEKIFSC-MKPNSILGLS  211 (313)
Q Consensus       187 P~~a~~~vi~ei~~~-mk~gaiLid~  211 (313)
                      ++.....++...... .+...++.-+
T Consensus        74 ~~d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           74 PRDEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             SCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             CCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence            998876666655544 3333445433

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.02  E-value=1.4e-05  Score=74.31  Aligned_cols=85  Identities=14%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             CEEEEEcccchHHHH-HHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~Al-A~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      ++|||||+|.||..+ +..+++.      +.+++...+++.+. .+.+.+.|...   ...+.+++++  +.|+|++++|
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp   71 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT   71 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred             CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence            479999999999998 8888765      88766455554433 34455667531   2568889887  5999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEE
Q 021356          188 DAAQADNYEKIFSCMKPNSIL  208 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiL  208 (313)
                      +..+.+++.+.+   +.|+-|
T Consensus        72 ~~~h~~~~~~al---~~Gk~v   89 (332)
T 2glx_A           72 NELHREQTLAAI---RAGKHV   89 (332)
T ss_dssp             GGGHHHHHHHHH---HTTCEE
T ss_pred             hhHhHHHHHHHH---HCCCeE
Confidence            999888776544   346543

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.01  E-value=1.5e-05  Score=75.03  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHH-HHH--CC------ceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAE-ARA--AG------FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~-A~~--~G------~~~~~~~~~~~~e~i~~AD  180 (313)
                      |+|+|||.|.||.++|..|...      |+  +|++.++. ++..+. +..  .+      ...   ...+ .+.+++||
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~-~~~~~~~~~~l~~~~~~~~~~~i---~~~d-~~~~~~aD   69 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVD-KKRAEGDALDLIHGTPFTRRANI---YAGD-YADLKGSD   69 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSS-HHHHHHHHHHHHHHGGGSCCCEE---EECC-GGGGTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCC-hHHHHHHHHHHHhhhhhcCCcEE---EeCC-HHHhCCCC
Confidence            6899999999999999999988      87  77665544 332222 211  11      111   0124 46789999


Q ss_pred             EEEEcccchh----------------HHHHHHHHHhcCCCCcEEEE-ecCc
Q 021356          181 LVLLLISDAA----------------QADNYEKIFSCMKPNSILGL-SHGF  214 (313)
Q Consensus       181 vIiLavP~~a----------------~~~vi~ei~~~mk~gaiLid-~~Gv  214 (313)
                      +||+++|...                ..++++++.++. |+++|+. +-++
T Consensus        70 vViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~  119 (319)
T 1a5z_A           70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV  119 (319)
T ss_dssp             EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred             EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence            9999999643                234555666654 6666553 3344

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.01  E-value=3.5e-06  Score=78.80  Aligned_cols=97  Identities=14%  Similarity=0.159  Sum_probs=67.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCcee-cCCCcCCHHhhhccCCEEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~~~e~i~~ADvIiL  184 (313)
                      +++| +++.|||.|.||.+++..|.+.      |. +|++.+|..++..+.+.+.+... +-....+..+.+.++|+||.
T Consensus       138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn  210 (297)
T 2egg_A          138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIIN  210 (297)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEE
T ss_pred             CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEE
Confidence            5789 9999999999999999999998      98 88888776554445555544310 00001245677889999999


Q ss_pred             cccchhHHH----HHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQAD----NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~----vi~ei~~~mk~gaiLid~~  212 (313)
                      ++|......    .+.  ...++++.+|+|+.
T Consensus       211 ~t~~~~~~~~~~~~i~--~~~l~~~~~v~D~~  240 (297)
T 2egg_A          211 TTSVGMHPRVEVQPLS--LERLRPGVIVSDII  240 (297)
T ss_dssp             CSCTTCSSCCSCCSSC--CTTCCTTCEEEECC
T ss_pred             CCCCCCCCCCCCCCCC--HHHcCCCCEEEEcC
Confidence            999765321    011  23467788888765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.96  E-value=1.9e-05  Score=73.12  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHH-HHH--HCCceec-CC--CcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EAR--AAGFTEE-NG--TLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~-~A~--~~G~~~~-~~--~~~~~~e~i~~ADvIi  183 (313)
                      |+|+|||.|.||.++|..|...      |+  +|.+.++. ++..+ .+.  ..+.... +.  ...+..+.+++||+||
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vi   80 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIA-KERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVV   80 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSS-HHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCC-hhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEE
Confidence            8999999999999999999888      87  77655544 32222 122  2222100 00  0111246788999999


Q ss_pred             EcccchhH----------------HHHHHHHHhcCCCCcEEE-EecCch
Q 021356          184 LLISDAAQ----------------ADNYEKIFSCMKPNSILG-LSHGFL  215 (313)
Q Consensus       184 LavP~~a~----------------~~vi~ei~~~mk~gaiLi-d~~Gv~  215 (313)
                      ++++....                .++++++.++ .++++|+ ..-|+.
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~  128 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD  128 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchH
Confidence            99953321                1455666664 6777665 455664

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.95  E-value=7.7e-06  Score=77.28  Aligned_cols=93  Identities=16%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCEEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .. ++|+|||+|.||.++++.|.+.    + +. +|.+++|..++..+.+.+.+   +..  . ..+.++++ ++|+|++
T Consensus       124 ~~-~~v~iIGaG~~a~~~~~al~~~----~-~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NS-SVFGFIGCGTQAYFQLEALRRV----F-DIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TC-CEEEEECCSHHHHHHHHHHHHH----S-CCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEE
T ss_pred             CC-CEEEEEcCcHHHHHHHHHHHHh----C-CccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEE
Confidence            34 8999999999999999999873    0 33 56666665444344443322   111  1 35788999 9999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +||...  .++.  .+.+++|++|.+++...
T Consensus       194 aTp~~~--pv~~--~~~l~~G~~V~~ig~~~  220 (322)
T 1omo_A          194 TTPSRK--PVVK--AEWVEEGTHINAIGADG  220 (322)
T ss_dssp             CCCCSS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred             eeCCCC--ceec--HHHcCCCeEEEECCCCC
Confidence            999753  2222  25689999999887664

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.94  E-value=2.2e-05  Score=74.23  Aligned_cols=80  Identities=14%  Similarity=0.083  Sum_probs=59.7

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      ++|||||+|.||. .++..|++.     .+.+++...+++. +..+.+.+.|+..    ..+.+|+++  +.|+|++++|
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp   98 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP   98 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence            7899999999998 789988875     1566654444443 3344556667763    468999986  5899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.+++.+.+.
T Consensus        99 ~~~h~~~~~~al~  111 (350)
T 3rc1_A           99 AVLHAEWIDRALR  111 (350)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999887776554

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.93  E-value=2.5e-05  Score=73.00  Aligned_cols=81  Identities=10%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|||||+|.||..++..+++.     .+.+++...+++. +..+.+.+.|+..   ...+.+++++  +.|+|++++|+
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~   77 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN   77 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred             eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence            6899999999999999999875     1445544444433 3334455556531   2568999998  79999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.+.
T Consensus        78 ~~h~~~~~~al~   89 (329)
T 3evn_A           78 QDHYKVAKAALL   89 (329)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887765543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.92  E-value=3.5e-05  Score=73.12  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             CEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||+|.||...++.++ ..     .+.+++...+.+++ ..+.+.+.|+..  ....+.+++++  +.|+|++++|
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~--~~~~~~~~ll~~~~~D~V~i~tp   96 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTV-----SGVEVVAVCDIVAGRAQAALDKYAIEA--KDYNDYHDLINDKDVEVVIITAS   96 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTC-----TTEEEEEEECSSTTHHHHHHHHHTCCC--EEESSHHHHHHCTTCCEEEECSC
T ss_pred             eeEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhCCCC--eeeCCHHHHhcCCCCCEEEEcCC
Confidence            68999999999999999998 42     16676544454443 344566667310  12568999987  5899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.+++.+.+.
T Consensus        97 ~~~h~~~~~~al~  109 (357)
T 3ec7_A           97 NEAHADVAVAALN  109 (357)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999887775544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.92  E-value=3.3e-05  Score=71.67  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=60.4

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|||||+|.||.. +++.+++.     .+.+++...++++ +..+.+.+.|+..    ..+.+++..+.|+|++++|+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~   76 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA   76 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence            68999999999997 88888763     1667654444443 3334455556542    456777667899999999999


Q ss_pred             hHHHHHHHHHhcCCCCc-EEEE
Q 021356          190 AQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       190 a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      .+.+++...+.   .|+ +++.
T Consensus        77 ~h~~~~~~al~---~G~~v~~e   95 (319)
T 1tlt_A           77 SHFDVVSTLLN---AGVHVCVD   95 (319)
T ss_dssp             HHHHHHHHHHH---TTCEEEEE
T ss_pred             hHHHHHHHHHH---cCCeEEEe
Confidence            98887765443   455 4554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.91  E-value=2.3e-06  Score=79.76  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|-+|.+++..|.+.      |. +|.+.+|..++..+.+.  ++..  ....+..++++++|+||.
T Consensus       113 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~--~~~~--~~~~~~~~~~~~aDiVIn  181 (277)
T 3don_A          113 EGIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSL--NINK--INLSHAESHLDEFDIIIN  181 (277)
T ss_dssp             TTGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCS--CCEE--ECHHHHHHTGGGCSEEEE
T ss_pred             CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHH--hccc--ccHhhHHHHhcCCCEEEE
Confidence            36789 9999999999999999999998      98 78888776543322221  2211  012355677889999999


Q ss_pred             cccchhHHHHHHH-HHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEK-IFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~e-i~~~mk~gaiLid~~  212 (313)
                      ++|.....+.-.. -...++++.+|+|+.
T Consensus       182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~v  210 (277)
T 3don_A          182 TTPAGMNGNTDSVISLNRLASHTLVSDIV  210 (277)
T ss_dssp             CCC-------CCSSCCTTCCSSCEEEESC
T ss_pred             CccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence            9997643321000 134578899999875

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.91  E-value=4.5e-05  Score=71.36  Aligned_cols=89  Identities=22%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHH-HHH---------CC-ceecCCCcCCHHhhhccC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-ARA---------AG-FTEENGTLGDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~~---------~G-~~~~~~~~~~~~e~i~~A  179 (313)
                      ++|+|||.|.||.++|..|...      |+ +|++.++.. +..+. +.+         .. -+.   ...+. +.+++|
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~-~~~~~~~~~l~~~~~~~~~~~~i~---~t~d~-~a~~~a   73 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAE-GIPQGKALDITHSMVMFGSTSKVI---GTDDY-ADISGS   73 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSS-SHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCc-hHHHHHHHHHHhhhhhcCCCcEEE---ECCCH-HHhCCC
Confidence            7999999999999999999988      88 866555543 32222 111         01 111   12355 788999


Q ss_pred             CEEEEcc--------------cchh--HHHHHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLI--------------SDAA--QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLav--------------P~~a--~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+||+++              +.+.  ..++++++.++. |+++|+.++
T Consensus        74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~s  121 (317)
T 2ewd_A           74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICIT  121 (317)
T ss_dssp             SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeC
Confidence            9999999              3222  234667777764 578776543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.90  E-value=1.2e-06  Score=80.49  Aligned_cols=92  Identities=15%  Similarity=0.054  Sum_probs=62.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .++|  +++|||.|.||.+++..|.+.      |. +|.+.+|..++..+.+.+.+...    ..++.++++++|+||.+
T Consensus       106 ~~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVIna  173 (253)
T 3u62_A          106 EVKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNT  173 (253)
T ss_dssp             CCCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEEC
T ss_pred             CCCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEEC
Confidence            4566  899999999999999999998      88 78888776432222222222221    34677889999999999


Q ss_pred             ccchhHHH--HHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAAQAD--NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~--vi~ei~~~mk~gaiLid~~  212 (313)
                      +|.....+  .+.  .+.++++.+|+|+.
T Consensus       174 tp~gm~p~~~~i~--~~~l~~~~~V~Div  200 (253)
T 3u62_A          174 TSVGMKGEELPVS--DDSLKNLSLVYDVI  200 (253)
T ss_dssp             SSTTTTSCCCSCC--HHHHTTCSEEEECS
T ss_pred             CCCCCCCCCCCCC--HHHhCcCCEEEEee
Confidence            98643211  121  12357888988754

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.90  E-value=3.6e-05  Score=64.38  Aligned_cols=115  Identities=14%  Similarity=0.133  Sum_probs=75.2

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++|+|||.    |.+|..++++|++.      |++| +...+.  ...     -.|...    ..++.|+-...|+++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v-~~vnp~~~~~~-----i~G~~~----~~sl~el~~~vDlavi~   77 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRV-LPVNPRFQGEE-----LFGEEA----VASLLDLKEPVDILDVF   77 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHT------TCEE-EEECGGGTTSE-----ETTEEC----BSSGGGCCSCCSEEEEC
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHC------CCEE-EEeCCCcccCc-----CCCEEe----cCCHHHCCCCCCEEEEE
Confidence            89999999    89999999999999      9974 333322  111     135542    45788888889999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      +|+....+++++..+.-. +.+++..+...- .+.+  ..-..++++++  ||+++-....+.
T Consensus        78 vp~~~~~~v~~~~~~~gi-~~i~~~~g~~~~-~~~~--~a~~~Gir~vg--pnc~g~~~~~~~  134 (140)
T 1iuk_A           78 RPPSALMDHLPEVLALRP-GLVWLQSGIRHP-EFEK--ALKEAGIPVVA--DRCLMVEHKRLF  134 (140)
T ss_dssp             SCHHHHTTTHHHHHHHCC-SCEEECTTCCCH-HHHH--HHHHTTCCEEE--SCCHHHHHHHHH
T ss_pred             eCHHHHHHHHHHHHHcCC-CEEEEcCCcCHH-HHHH--HHHHcCCEEEc--CCccceEChhhc
Confidence            999888888887665432 345554433321 2211  01123567664  888776654443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.89  E-value=5e-05  Score=70.87  Aligned_cols=87  Identities=13%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             CEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      ++|||||+|.||..+++.++ +.     .+.+++...+.++... +.+.+.|...   ...+.+++++  +.|+|++++|
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp   80 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVET---TYTNYKDMIDTENIDAIFIVAP   80 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSE---EESCHHHHHTTSCCSEEEECSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence            68999999999999999987 43     1666655555554433 3445557621   1458889886  6999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEE
Q 021356          188 DAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +..+.+++.+.+   +.|+.|+
T Consensus        81 ~~~h~~~~~~al---~~G~~v~   99 (346)
T 3cea_A           81 TPFHPEMTIYAM---NAGLNVF   99 (346)
T ss_dssp             GGGHHHHHHHHH---HTTCEEE
T ss_pred             hHhHHHHHHHHH---HCCCEEE
Confidence            999888766544   3465443

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.88  E-value=2.6e-05  Score=72.57  Aligned_cols=87  Identities=16%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~  188 (313)
                      ++|||||+|.||. .+++.|++.     .+.+++ ..+++++ ..+.+.+.|+..   ...+..+++ +++|+|++++|+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~-v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~   73 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELV-LCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAAT   73 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTS-----TTEEEE-EECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhC-----CCceEE-EEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCc
Confidence            5899999999998 599988764     156766 4444443 334555667541   022444555 789999999999


Q ss_pred             hhHHHHHHHHHhcCCCCc-EEEE
Q 021356          189 AAQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      ..+.+++.+.+.   .|+ +++.
T Consensus        74 ~~h~~~~~~al~---~Gk~V~~E   93 (323)
T 1xea_A           74 DVHSTLAAFFLH---LGIPTFVD   93 (323)
T ss_dssp             GGHHHHHHHHHH---TTCCEEEE
T ss_pred             hhHHHHHHHHHH---CCCeEEEe
Confidence            998887765443   354 5554

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.85  E-value=3.5e-05  Score=71.82  Aligned_cols=91  Identities=14%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|+|||+ |.||..+++++++.      |++++...++....   ....|+..    +.+++|+.+  +.|++++++|+
T Consensus         8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g---~~~~G~~v----y~sl~el~~~~~~D~viI~tP~   74 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGG---TTHLGLPV----FNTVREAVAATGATASVIYVPA   74 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred             CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCccc---ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence            78999998 99999999999998      88865555543110   01356543    458889888  89999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      ..+.+++.+..+. ....+|+.+.|+..
T Consensus        75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~  101 (288)
T 2nu8_A           75 PFCKDSILEAIDA-GIKLIITITEGIPT  101 (288)
T ss_dssp             GGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred             HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence            9999988876653 22345667778854

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.85  E-value=1.2e-05  Score=74.50  Aligned_cols=86  Identities=13%  Similarity=0.112  Sum_probs=58.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~~  189 (313)
                      ++|||||+|.||..+++.|++.     .+.+++...+++++..+...+. +.    ...+.+++++  ++|+|++++|+.
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~D~V~i~tp~~   80 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CV----IESDWRSVVSAPEVEAVIIATPPA   80 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CE----EESSTHHHHTCTTCCEEEEESCGG
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Cc----ccCCHHHHhhCCCCCEEEEeCChH
Confidence            6899999999999999999875     1566554455443322111111 22    1457888885  899999999999


Q ss_pred             hHHHHHHHHHhcCCCCc-EEEE
Q 021356          190 AQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       190 a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      .+.+++.+.+   +.|+ +++.
T Consensus        81 ~h~~~~~~al---~~Gk~v~~e   99 (315)
T 3c1a_A           81 THAEITLAAI---ASGKAVLVE   99 (315)
T ss_dssp             GHHHHHHHHH---HTTCEEEEE
T ss_pred             HHHHHHHHHH---HCCCcEEEc
Confidence            9988777544   3455 4444

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.82  E-value=5.3e-05  Score=70.72  Aligned_cols=86  Identities=17%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      .+|||||+|+||..+++.+++.     .+++++...+++++..   ++.|+..  ....++.+. .++|+|++++|+..+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h   78 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV   78 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence            6899999999999999999874     1667654445544322   2255431  113355554 789999999999998


Q ss_pred             HHHHHHHHhcCCCCcEEEEe
Q 021356          192 ADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~  211 (313)
                      .+++.+.+   +.|+-|++.
T Consensus        79 ~~~~~~al---~aG~~Vi~e   95 (304)
T 3bio_A           79 ERTALEIL---KKGICTADS   95 (304)
T ss_dssp             HHHHHHHH---TTTCEEEEC
T ss_pred             HHHHHHHH---HcCCeEEEC
Confidence            87776544   447766654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.80  E-value=5.6e-05  Score=70.74  Aligned_cols=86  Identities=16%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             cCCCCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEE
Q 021356          108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVL  183 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIi  183 (313)
                      ++.|.+|||||+|.||.. .+..+++.     .+.+++...+.++ +..+.+.+.|+..   .+.+.+|+++  +.|+|+
T Consensus        20 ~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~   91 (350)
T 4had_A           20 FQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAVY   91 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEEE
T ss_pred             ccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEEE
Confidence            345579999999999986 46666664     1556554445443 3445667777642   2568999985  579999


Q ss_pred             EcccchhHHHHHHHHHhc
Q 021356          184 LLISDAAQADNYEKIFSC  201 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~  201 (313)
                      +++|+..+.++..+.+..
T Consensus        92 I~tP~~~H~~~~~~al~a  109 (350)
T 4had_A           92 IPLPTSQHIEWSIKAADA  109 (350)
T ss_dssp             ECSCGGGHHHHHHHHHHT
T ss_pred             EeCCCchhHHHHHHHHhc
Confidence            999999998877765543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.80  E-value=4.3e-05  Score=71.41  Aligned_cols=83  Identities=11%  Similarity=0.079  Sum_probs=59.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|||||+|.||...++.+++. .  +.+++++...+++. +..+.+.+.|+..   ...+.+++++  +.|+|++++|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~-~--~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~   76 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTL-P--RSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH   76 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS-C--TTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred             cEEEEECchHHHHHHHHHHHhC-C--CCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence            6899999999999999998765 0  00245544444443 3344556667631   2568999997  69999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.++..+.+.
T Consensus        77 ~~H~~~~~~al~   88 (334)
T 3ohs_X           77 PQHKAAVMLCLA   88 (334)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999887765544

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.79  E-value=2.8e-05  Score=75.18  Aligned_cols=70  Identities=14%  Similarity=0.088  Sum_probs=51.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiLa  185 (313)
                      +|+| ++|+|+|+|+||..+|+.|.+.      |++|++.++...+..+.+.+.|..     ..+.++++. +||+++.|
T Consensus       170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~-----~v~~~~ll~~~~DIvip~  237 (364)
T 1leh_A          170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGAD-----AVAPNAIYGVTCDIFAPC  237 (364)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCE-----ECCGGGTTTCCCSEEEEC
T ss_pred             CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCE-----EEChHHHhccCCcEeecc
Confidence            7999 9999999999999999999999      999875544322223345544543     235556665 89999987


Q ss_pred             ccc
Q 021356          186 ISD  188 (313)
Q Consensus       186 vP~  188 (313)
                      ...
T Consensus       238 a~~  240 (364)
T 1leh_A          238 ALG  240 (364)
T ss_dssp             SCS
T ss_pred             chH
Confidence            543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.79  E-value=5.5e-05  Score=70.68  Aligned_cols=92  Identities=20%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--Ccee-cCC--CcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--TLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~~--~~~~~~e~i~~ADvIiL  184 (313)
                      |||+|||.|.||.++|..|...      |+  +|.+.++...+....+.+.  +... .+.  +..+ .+.+++||+||+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEE
Confidence            6899999999999999999888      87  7665554322122222221  1100 000  0123 467899999999


Q ss_pred             cccchhH----------------HHHHHHHHhcCCCCcEEEEe
Q 021356          185 LISDAAQ----------------ADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       185 avP~~a~----------------~~vi~ei~~~mk~gaiLid~  211 (313)
                      +++....                .++++++.++ .|+++++.+
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~  115 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVT  115 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEEC
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence            9954321                3345556665 578776653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.78  E-value=0.00018  Score=59.60  Aligned_cols=97  Identities=12%  Similarity=-0.016  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc---HHHHHHCCceecCCCcCCH---Hhh-hccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDI---YET-ISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~---~e~-i~~ADvIiL  184 (313)
                      ++|.|+|+|.+|..+++.|.+.      |++|++..+..++.   .......|+..-.+...+.   .++ ++++|+|++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            6899999999999999999998      99887766643221   1222233432111112222   333 789999999


Q ss_pred             cccchhHHHHHHHHHhcCCC-CcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKP-NSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~-gaiLid~~Gv  214 (313)
                      ++++......+......+.+ ..++..+.+.
T Consensus        78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             CSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             ecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            99988766555555544433 3455555443

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.78  E-value=2.5e-05  Score=73.41  Aligned_cols=85  Identities=9%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      .+|+|||+|+||..+++.+.+.     .+++++...+++... +.+  .|+..    ..+.++++.++|+|++++|+..+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~-~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~h   71 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL-DTK--TPVFD----VADVDKHADDVDVLFLCMGSATD   71 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC-SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred             CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH-hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHHH
Confidence            5899999999999999998775     145655444443222 111  45432    34677877899999999999877


Q ss_pred             HHHHHHHHhcCCCCcEEEEe
Q 021356          192 ADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~  211 (313)
                      .+.+..   .++.|.-|++.
T Consensus        72 ~~~~~~---al~aG~~Vv~e   88 (320)
T 1f06_A           72 IPEQAP---KFAQFACTVDT   88 (320)
T ss_dssp             HHHHHH---HHTTTSEEECC
T ss_pred             HHHHHH---HHHCCCEEEEC
Confidence            555443   34457655543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.78  E-value=8.6e-05  Score=65.67  Aligned_cols=94  Identities=12%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-hccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-i~~ADvIiLavP  187 (313)
                      ++|.|+|+|.+|..+++.|.+.      |+ |++. +++++..+.+. .|+..-.+...+.+   ++ ++++|.|+++++
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vi-d~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE   80 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTS------EE-EEEE-SCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred             CEEEEECCChHHHHHHHHHHhC------Ce-EEEE-ECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence            7899999999999999999988      87 6544 44444444444 56432112222332   33 789999999999


Q ss_pred             chhHHHHHHHHHhcCCCC-cEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPN-SILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~g-aiLid~~Gv  214 (313)
                      +......+...+..+.++ .++..+..-
T Consensus        81 ~d~~n~~~~~~a~~~~~~~~iia~~~~~  108 (234)
T 2aef_A           81 SDSETIHCILGIRKIDESVRIIAEAERY  108 (234)
T ss_dssp             CHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred             CcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            886655555555556676 666666654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.77  E-value=4.8e-05  Score=71.03  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=68.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      ++|+|+|. |.||..+++++++.      |+++++...+....   ....|+..    ..+++|+.+  ..|++++.+|+
T Consensus         8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~   74 (288)
T 1oi7_A            8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGG---MEVLGVPV----YDTVKEAVAHHEVDASIIFVPA   74 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCC---ceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence            78999998 99999999999998      99866566553210   01246553    457888888  89999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      ....+++++..+. .-..+|+.+.|+..
T Consensus        75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~  101 (288)
T 1oi7_A           75 PAAADAALEAAHA-GIPLIVLITEGIPT  101 (288)
T ss_dssp             HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred             HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence            9999998876653 22446777888854

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.77  E-value=8.5e-05  Score=70.01  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=69.6

Q ss_pred             CEEEEE-cc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgII-G~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      ++++|| |. |++|..+++++++.      |+++++..++....   ..-.|+..    ..+++|+.+  ..|++++++|
T Consensus        14 ~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~avI~vP   80 (305)
T 2fp4_A           14 NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASVIYVP   80 (305)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEEEecC
Confidence            889999 98 99999999999999      99866566554211   01246653    457899888  8999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      +..+.+++++..+. .-..+|+.+.|+..
T Consensus        81 ~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~  108 (305)
T 2fp4_A           81 PPFAAAAINEAIDA-EVPLVVCITEGIPQ  108 (305)
T ss_dssp             HHHHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred             HHHHHHHHHHHHHC-CCCEEEEECCCCCh
Confidence            99999999876653 23456778999864

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.74  E-value=2.1e-05  Score=75.92  Aligned_cols=89  Identities=17%  Similarity=0.166  Sum_probs=62.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiL  184 (313)
                      .+|+| ++++|+|+|++|..+|+.|+++      |++|+ ..+.+....+.+.+.|..     ..+.++++. +||+++.
T Consensus       171 ~~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVv-vsD~~~~~~~~a~~~ga~-----~v~~~ell~~~~DIliP  237 (355)
T 1c1d_A          171 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLL-VADTDTERVAHAVALGHT-----AVALEDVLSTPCDVFAP  237 (355)
T ss_dssp             CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHHTTCE-----ECCGGGGGGCCCSEEEE
T ss_pred             CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEE-EEeCCccHHHHHHhcCCE-----EeChHHhhcCccceecH
Confidence            37999 9999999999999999999999      99987 444443324455566654     236677777 9999985


Q ss_pred             cccchhHHHHHH-HHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYE-KIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~-ei~~~mk~gaiLid~~  212 (313)
                      |    +...+++ +.++.|| .++|+..+
T Consensus       238 ~----A~~~~I~~~~~~~lk-~~iVie~A  261 (355)
T 1c1d_A          238 C----AMGGVITTEVARTLD-CSVVAGAA  261 (355)
T ss_dssp             C----SCSCCBCHHHHHHCC-CSEECCSC
T ss_pred             h----HHHhhcCHHHHhhCC-CCEEEECC
Confidence            3    2223443 4556676 45666544

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.73  E-value=1e-05  Score=75.48  Aligned_cols=94  Identities=14%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhccCCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~i~~ADv  181 (313)
                      .+++| +++.|||.|-+|.+++..|.+.      |. +|.+.+|..++..+.+.+.+-   ..    ..+.+++.+++|+
T Consensus       122 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDi  190 (281)
T 3o8q_A          122 VLLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDV  190 (281)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEE
T ss_pred             CCccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCE
Confidence            35789 9999999999999999999998      96 888888875544444444331   11    2245566689999


Q ss_pred             EEEcccchhHHHH--HHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADN--YEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~v--i~ei~~~mk~gaiLid~~  212 (313)
                      ||.++|.....+.  +.  .+.++++.+|+|+.
T Consensus       191 IInaTp~gm~~~~~~l~--~~~l~~~~~V~Dlv  221 (281)
T 3o8q_A          191 IINSTSASLDGELPAID--PVIFSSRSVCYDMM  221 (281)
T ss_dssp             EEECSCCCC----CSCC--GGGEEEEEEEEESC
T ss_pred             EEEcCcCCCCCCCCCCC--HHHhCcCCEEEEec
Confidence            9999998764321  11  23467778888765

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.70  E-value=0.00011  Score=69.46  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+|||||+|.||..+++.|...     .+++++...+++.+ ..+.+.+.|+........+.+++++  +.|+|++++|+
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   81 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT   81 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred             eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence            6899999999999999998874     15565544444433 3345666674100012468889886  59999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEE
Q 021356          189 AAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      ..+.+++.+.+   +.|+-|+
T Consensus        82 ~~h~~~~~~al---~aGk~V~   99 (362)
T 1ydw_A           82 SLHVEWAIKAA---EKGKHIL   99 (362)
T ss_dssp             GGHHHHHHHHH---TTTCEEE
T ss_pred             HHHHHHHHHHH---HCCCeEE
Confidence            99888776543   4565443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.67  E-value=0.00029  Score=65.87  Aligned_cols=72  Identities=18%  Similarity=0.096  Sum_probs=44.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH--HCCc-----eecCCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGF-----TEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--~~G~-----~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |||+|||.|.||.++|..|...    +.|.+|++.++........+.  ..+.     ...-....+.++ +++||+||+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVII   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEE
Confidence            6899999999999999998774    115677655554332222211  1110     000001245655 899999999


Q ss_pred             cccc
Q 021356          185 LISD  188 (313)
Q Consensus       185 avP~  188 (313)
                      ++|.
T Consensus        76 av~~   79 (310)
T 1guz_A           76 TAGL   79 (310)
T ss_dssp             CCSC
T ss_pred             eCCC
Confidence            9964

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.66  E-value=0.00023  Score=65.09  Aligned_cols=152  Identities=11%  Similarity=0.066  Sum_probs=89.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |++|+|+|+|.||+.+++.+.+.      +.+++...+++..     ...|+..    ..++++++ ++|+||-.+.|..
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a   66 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL   66 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred             ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence            48999999999999999999887      5555444555432     1356553    45778888 9999997777776


Q ss_pred             HHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH--HHHHH-hcccccCCCceEEEEec
Q 021356          191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYV-QGKEINGAGINSSFAVH  266 (313)
Q Consensus       191 ~~~vi~ei~~~mk~ga-iLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~--r~lf~-~G~e~~g~G~~~iitp~  266 (313)
                      ..+.++     ++.|. +|+-+.|+....++..... .+.+.+ -..||+.--..  -.+-+ ..+-+.++.+ -|+--|
T Consensus        67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~l~~a-a~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~~di-eI~E~H  138 (243)
T 3qy9_A           67 LFPLLD-----EDFHLPLVVATTGEKEKLLNKLDEL-SQNMPV-FFSANMSYGVHALTKILAAAVPLLDDFDI-ELTEAH  138 (243)
T ss_dssp             HHHHHT-----SCCCCCEEECCCSSHHHHHHHHHHH-TTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTTSEE-EEEEEE
T ss_pred             HHHHHH-----HhcCCceEeCCCCCCHHHHHHHHHH-HhcCCE-EEECCccHHHHHHHHHHHHHHHhcCCCCE-EEEEcC
Confidence            655553     55565 4555678754322211112 234444 67787754430  00000 0111111212 223334


Q ss_pred             c-----CCCHHHHHHHHHHHHHcCCC
Q 021356          267 Q-----DVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       267 ~-----d~~~ea~e~a~~L~~alG~~  287 (313)
                      .     -.++.|+.+++.+ +.+|..
T Consensus       139 H~~K~DaPSGTA~~la~~i-~~~~~~  163 (243)
T 3qy9_A          139 HNKKVDAPSGTLEKLYDVI-VSLKEN  163 (243)
T ss_dssp             CTTCCSSSCHHHHHHHHHH-HHHSTT
T ss_pred             CCCCCCCCCHHHHHHHHHH-HhcCcc
Confidence            3     2678999999999 998853

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.66  E-value=0.00017  Score=68.33  Aligned_cols=93  Identities=12%  Similarity=0.050  Sum_probs=58.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHH-HHH-------CCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-ARA-------AGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~~-------~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      +||+|||.|.+|.++|..|...      |+ +|.+.++. ++..+. +..       .+....-....+.++.+++||+|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~-~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiV   82 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVV-KGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCV   82 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSS-SSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECC-hhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEE
Confidence            7999999999999999999988      87 86555444 332222 111       11110000125777789999999


Q ss_pred             EEcc--cchh-------------------HHHHHHHHHhcCCCCcEEEEec
Q 021356          183 LLLI--SDAA-------------------QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLav--P~~a-------------------~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+++  |...                   ..++++++.++. |+++|+.++
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t  132 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVT  132 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEc
Confidence            9998  5321                   233555666654 777776553

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.64  E-value=0.00034  Score=66.15  Aligned_cols=88  Identities=19%  Similarity=0.119  Sum_probs=56.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHH-HHH----------CCceecCCCcCCHHhhhccC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-ARA----------AGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~~----------~G~~~~~~~~~~~~e~i~~A  179 (313)
                      +||+|||.|.||.++|..+...      |+ +|++.+.. ++..+. +..          ..-+.   ...+. +.+++|
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~-~~~l~~~~~~l~~~~~~~~~~~~i~---~t~d~-~al~~a   83 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDII-EGVPQGKALDLNHCMALIGSPAKIF---GENNY-EYLQNS   83 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSS-TTHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECC-HHHHHHHHHHHHhHhhccCCCCEEE---ECCCH-HHHCCC
Confidence            7999999999999999999888      88 85555443 332221 111          11111   12455 789999


Q ss_pred             CEEEEcc--cch-------------h-HHHHHHHHHhcCCCCcEEEEe
Q 021356          180 DLVLLLI--SDA-------------A-QADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       180 DvIiLav--P~~-------------a-~~~vi~ei~~~mk~gaiLid~  211 (313)
                      |+||+++  |..             . ..++++++.++. |+++++.+
T Consensus        84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~  130 (328)
T 2hjr_A           84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI  130 (328)
T ss_dssp             SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred             CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            9999998  431             1 223555566654 77776654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.64  E-value=4.8e-05  Score=69.69  Aligned_cols=94  Identities=21%  Similarity=0.095  Sum_probs=62.8

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhh-ccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~i-~~ADvI  182 (313)
                      +++| +++.|+|.|.||.++++.|.+.      |.+|++.+|..++..+.+.+.+.   .+    ..+.+++. .++|+|
T Consensus       116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSEE
T ss_pred             CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccCCee----EecHHHhccCCCCEE
Confidence            5789 9999999999999999999998      98888777764443444444332   11    12333433 589999


Q ss_pred             EEcccchhHHHHHHHH-HhcCCCCcEEEEec
Q 021356          183 LLLISDAAQADNYEKI-FSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLavP~~a~~~vi~ei-~~~mk~gaiLid~~  212 (313)
                      |.++|.....++ ..+ ...++++.+++|+.
T Consensus       185 Vn~t~~~~~~~~-~~i~~~~l~~~~~v~D~~  214 (271)
T 1nyt_A          185 INATSSGISGDI-PAIPSSLIHPGIYCYDMF  214 (271)
T ss_dssp             EECCSCGGGTCC-CCCCGGGCCTTCEEEESC
T ss_pred             EECCCCCCCCCC-CCCCHHHcCCCCEEEEec
Confidence            999997654221 011 12356777777654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.62  E-value=0.00021  Score=66.64  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=61.3

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||+|.+|. .++..++..      +.+++...+. .++..+.+.+.+...   ...+.+++++  +.|+|++++|
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp   75 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVP---FAASAEQLITDASIDLIACAVI   75 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCC---BCSCHHHHHTCTTCCEEEECSC
T ss_pred             cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCc---ccCCHHHHhhCCCCCEEEEeCC
Confidence            6899999999996 677777655      7776544444 344455666664321   2568999987  6899999999


Q ss_pred             chhHHHHHHHHHhcCCCCc-EEEE
Q 021356          188 DAAQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      +..+.++..+.+.   .|+ +++.
T Consensus        76 ~~~h~~~~~~al~---aGkhVl~E   96 (336)
T 2p2s_A           76 PCDRAELALRTLD---AGKDFFTA   96 (336)
T ss_dssp             GGGHHHHHHHHHH---TTCEEEEC
T ss_pred             hhhHHHHHHHHHH---CCCcEEEe
Confidence            9999887765443   455 4554

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.61  E-value=7.1e-05  Score=70.31  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=61.4

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||.|. +|..+|+.|...      |..|.+..++                   ..++++.+++||+||.
T Consensus       157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~  210 (285)
T 3l07_A          157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV  210 (285)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred             CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence            57899 9999999987 699999999998      9887766432                   1267889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++-..   ++.  .+++|||++|+|++-
T Consensus       211 Avg~p~---~I~--~~~vk~GavVIDvgi  234 (285)
T 3l07_A          211 AVGKPN---FIT--ADMVKEGAVVIDVGI  234 (285)
T ss_dssp             CCCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred             CCCCCC---CCC--HHHcCCCcEEEEecc
Confidence            998422   232  256799999999873

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.61  E-value=7.2e-05  Score=70.26  Aligned_cols=77  Identities=18%  Similarity=0.110  Sum_probs=61.7

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| +++.|||.|. +|..+|+.|...      |..|.+..++                   ..++++.+++||+||.
T Consensus       156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~  209 (285)
T 3p2o_A          156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV  209 (285)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred             CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence            57899 9999999987 699999999998      9887766432                   1267889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++-..   ++.  .+++|||++|+|++-
T Consensus       210 Avg~p~---~I~--~~~vk~GavVIDVgi  233 (285)
T 3p2o_A          210 AAGCVN---LLR--SDMVKEGVIVVDVGI  233 (285)
T ss_dssp             CSSCTT---CBC--GGGSCTTEEEEECCC
T ss_pred             CCCCCC---cCC--HHHcCCCeEEEEecc
Confidence            998432   232  256799999999874

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.60  E-value=0.00011  Score=70.43  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             CEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021356          112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP  187 (313)
                      .+|||||+| .||..++..+++.     .+.+++...+.+++ ..+.+.+.|+..    ..+.+|++++  .|+|++++|
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp   73 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP   73 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence            689999999 9999999999875     15666555555443 334555667653    5689999874  999999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++..+.+.
T Consensus        74 ~~~H~~~~~~al~   86 (387)
T 3moi_A           74 HQFHCEHVVQASE   86 (387)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999887775554

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.59  E-value=0.00015  Score=68.18  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCC-------cCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~-------~~~~~e~i~~ADvI  182 (313)
                      +||+|||.|+||.++|..|+..      +.  +++ ..+.+++ ..++...++.+....       ..+..+.+++||+|
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~-l~Di~~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV   78 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQ------GIADEIV-LIDANES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV   78 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEE-EECSSHH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCCCEEE-EEeCCcc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence            8999999999999999999887      64  554 4454443 222222222210000       01345789999999


Q ss_pred             EEcccch
Q 021356          183 LLLISDA  189 (313)
Q Consensus       183 iLavP~~  189 (313)
                      |++.+..
T Consensus        79 iia~~~~   85 (316)
T 1ldn_A           79 VICAGAN   85 (316)
T ss_dssp             EECCSCC
T ss_pred             EEcCCCC
Confidence            9997644

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.59  E-value=0.00017  Score=67.38  Aligned_cols=81  Identities=10%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh----------ccC
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI----------SGS  179 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i----------~~A  179 (313)
                      +++|||||+ |.||...+..+++.      +.+++...+.++.....+...+...   ...+.++++          ++.
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~l~~~~~~v   73 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAE---FFTEPEAFEAYLEDLRDRGEGV   73 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCE---EESCHHHHHHHHHHHHHTTCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCc---eeCCHHHHHHHhhhhcccCCCC
Confidence            479999999 78999999999987      7776655555544322222222221   245788877          679


Q ss_pred             CEEEEcccchhHHHHHHHHHh
Q 021356          180 DLVLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~  200 (313)
                      |+|++++|+..+.++..+.+.
T Consensus        74 D~V~I~tP~~~H~~~~~~al~   94 (312)
T 3o9z_A           74 DYLSIASPNHLHYPQIRMALR   94 (312)
T ss_dssp             SEEEECSCGGGHHHHHHHHHH
T ss_pred             cEEEECCCchhhHHHHHHHHH
Confidence            999999999999887776554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.58  E-value=2.1e-05  Score=72.28  Aligned_cols=75  Identities=13%  Similarity=0.011  Sum_probs=52.0

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhc-cCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETIS-GSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~i~-~ADvI  182 (313)
                      +++| +++.|||.|.||.+++..|.+.      |.+|++.+|..++..+.+.+.+.   ..    ..+.+++.+ ++|+|
T Consensus       116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~~----~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQ----AVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCCSCCSEE
T ss_pred             CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCeE----EeeHHHhccCCCCEE
Confidence            5788 9999999999999999999998      88888888775444444433221   11    123344434 89999


Q ss_pred             EEcccchhHH
Q 021356          183 LLLISDAAQA  192 (313)
Q Consensus       183 iLavP~~a~~  192 (313)
                      |.++|.....
T Consensus       185 In~t~~~~~~  194 (272)
T 1p77_A          185 INATSAGLSG  194 (272)
T ss_dssp             EECCCC----
T ss_pred             EECCCCCCCC
Confidence            9999987653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.58  E-value=4.5e-05  Score=70.72  Aligned_cols=93  Identities=10%  Similarity=0.056  Sum_probs=63.9

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc--eecCCCcCCHHhhh-ccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETI-SGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~--~~~~~~~~~~~e~i-~~ADvI  182 (313)
                      +++| +++.|+|.|-+|.+++..|.+.      |. +|.+.+|..++..+.+.+.+.  ..    ..+.+++- .++|+|
T Consensus       117 ~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~----~~~~~~l~~~~~Div  185 (272)
T 3pwz_A          117 PLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR----ISRYEALEGQSFDIV  185 (272)
T ss_dssp             CCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE----EECSGGGTTCCCSEE
T ss_pred             CccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee----EeeHHHhcccCCCEE
Confidence            5788 9999999999999999999998      96 788888775554555554431  11    12333432 789999


Q ss_pred             EEcccchhHHH--HHHHHHhcCCCCcEEEEec
Q 021356          183 LLLISDAAQAD--NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLavP~~a~~~--vi~ei~~~mk~gaiLid~~  212 (313)
                      |-+||.....+  .+.  .+.++++.+|+|+.
T Consensus       186 InaTp~gm~~~~~~i~--~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          186 VNATSASLTADLPPLP--ADVLGEAALAYELA  215 (272)
T ss_dssp             EECSSGGGGTCCCCCC--GGGGTTCSEEEESS
T ss_pred             EECCCCCCCCCCCCCC--HHHhCcCCEEEEee
Confidence            99999765322  111  13467777777764

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.56  E-value=0.00026  Score=66.68  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhcc--CCEEEEc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~i~~--ADvIiLa  185 (313)
                      .+|||||+|.||. ..+..+++.     .+++++...+++ ...+.+.+   .+...    ..+.++++++  .|+|+++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~   72 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC   72 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence            5899999999998 566667653     256665444444 34445555   45442    5688999976  8999999


Q ss_pred             ccchhHHHHHHHHHh
Q 021356          186 ISDAAQADNYEKIFS  200 (313)
Q Consensus       186 vP~~a~~~vi~ei~~  200 (313)
                      +|+..+.++..+.+.
T Consensus        73 tp~~~h~~~~~~al~   87 (349)
T 3i23_A           73 TPAHTHYDLAKQAIL   87 (349)
T ss_dssp             SCGGGHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999999887765544

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.56  E-value=0.00014  Score=68.10  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=60.6

Q ss_pred             cCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       108 l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      |+| +++.|||.|. +|..+|+.|...      |..|.+..++                   ..++++.+++||+||.++
T Consensus       148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av  201 (276)
T 3ngx_A          148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV  201 (276)
T ss_dssp             CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred             cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence            899 9999999985 899999999998      9888766432                   137889999999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +-..   ++.  .+++|||++|+|++-
T Consensus       202 g~p~---~I~--~~~vk~GavVIDvgi  223 (276)
T 3ngx_A          202 GRPG---FLN--REMVTPGSVVIDVGI  223 (276)
T ss_dssp             SCTT---CBC--GGGCCTTCEEEECCC
T ss_pred             CCCc---ccc--HhhccCCcEEEEecc
Confidence            8532   232  255799999999873

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.55  E-value=0.0002  Score=67.04  Aligned_cols=82  Identities=10%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-----------cc
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----------SG  178 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-----------~~  178 (313)
                      +++|||||+ |.||...+.++++.      +.+++...+.++.....+...+...   ...+.++++           ++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~l~~~~~~~   73 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSE---FFTEFEFFLDHASNLKRDSATA   73 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCE---EESSHHHHHHHHHHHTTSTTTS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCc---EECCHHHHHHhhhhhhhccCCC
Confidence            479999999 79999999999987      8776655555443322222222211   245788876           57


Q ss_pred             CCEEEEcccchhHHHHHHHHHhc
Q 021356          179 SDLVLLLISDAAQADNYEKIFSC  201 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~  201 (313)
                      .|+|++++|+..+.++..+.+..
T Consensus        74 vD~V~I~tP~~~H~~~~~~al~a   96 (318)
T 3oa2_A           74 LDYVSICSPNYLHYPHIAAGLRL   96 (318)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHT
T ss_pred             CcEEEECCCcHHHHHHHHHHHHC
Confidence            99999999999998877765543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.53  E-value=1.9e-05  Score=75.32  Aligned_cols=97  Identities=12%  Similarity=0.070  Sum_probs=64.9

Q ss_pred             ccCCCCEEEEEcccch-HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC----c--CCHHhhhccC
Q 021356          107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS  179 (313)
Q Consensus       107 ~l~GikkIgIIG~G~m-G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----~--~~~~e~i~~A  179 (313)
                      +++| +++.|||.|.| |..+|+.|...      |..|.+.+|...+..+.+.+.+......+    +  .++++.+++|
T Consensus       174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A  246 (320)
T 1edz_A          174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS  246 (320)
T ss_dssp             TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred             CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence            7899 99999999976 99999999998      88888776652222222222221000000    1  3678999999


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+||.+++-...  ++.  .+++|+|++|+|++--
T Consensus       247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi~  277 (320)
T 1edz_A          247 DVVITGVPSENY--KFP--TEYIKEGAVCINFACT  277 (320)
T ss_dssp             SEEEECCCCTTC--CBC--TTTSCTTEEEEECSSS
T ss_pred             CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCCC
Confidence            999999985321  122  1346899999998743

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.53  E-value=3.9e-05  Score=71.35  Aligned_cols=93  Identities=16%  Similarity=0.030  Sum_probs=64.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +++.| +++.|||.|-+|.+++..|.+.      |.+|.+.+|..++..+.+ +.|+..     .+.+++ .++|+||.+
T Consensus       114 ~~~~~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVIna  179 (269)
T 3phh_A          114 KQKNY-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINA  179 (269)
T ss_dssp             C---C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEEC
T ss_pred             HHcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEc
Confidence            33448 9999999999999999999998      888888888876666666 666542     233343 389999999


Q ss_pred             ccchhHHH-HHH-H-HHhcCCCCcEEEEec
Q 021356          186 ISDAAQAD-NYE-K-IFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~-vi~-e-i~~~mk~gaiLid~~  212 (313)
                      +|.....+ .+. + +...++++.+|+|+.
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~v  209 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLA  209 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESC
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeC
Confidence            99753221 121 1 222456788888764

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.53  E-value=0.00018  Score=69.10  Aligned_cols=83  Identities=12%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             CEEEEEcccc---hHHHHHHHHHhchhhhcCCcEEEE-EecCCc-ccHHHHHHCCceecCCCcCCHHhhhcc-------C
Q 021356          112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKV-GLRKGS-RSFAEARAAGFTEENGTLGDIYETISG-------S  179 (313)
Q Consensus       112 kkIgIIG~G~---mG~AlA~~Lr~~~~~~~~G~~Viv-g~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~-------A  179 (313)
                      .+|||||+|.   ||...+..++..     .+++++. ..+.++ +..+.+.+.|+.. .....+.+|++++       .
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~-----~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~v   86 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRD-----NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADGI   86 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGG-----GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTCC
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhC-----CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCCC
Confidence            6899999999   999999988776     0356553 334443 3445567788731 0125689999875       9


Q ss_pred             CEEEEcccchhHHHHHHHHHh
Q 021356          180 DLVLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~  200 (313)
                      |+|++++|+..+.+++.+.+.
T Consensus        87 D~V~i~tp~~~H~~~~~~al~  107 (398)
T 3dty_A           87 QAVSIATPNGTHYSITKAALE  107 (398)
T ss_dssp             SEEEEESCGGGHHHHHHHHHH
T ss_pred             CEEEECCCcHHHHHHHHHHHH
Confidence            999999999999887776554

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.52  E-value=0.00012  Score=69.44  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=56.0

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhhccC--CEEEEccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGS--DLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i~~A--DvIiLavP  187 (313)
                      .+|||||+|.||.. +++.|++.     .+.+++...+++++..+ .+.+.+..   ....+.++++++.  |+|++++|
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~i~tp   77 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDI---PVLDNVPAMLNQVPLDAVVMAGP   77 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSC---CEESSHHHHHHHSCCSEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCC---cccCCHHHHhcCCCCCEEEEcCC
Confidence            58999999999985 88988775     15666545555443322 22233322   1256899999754  99999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.+++.+.+.
T Consensus        78 ~~~H~~~~~~al~   90 (359)
T 3m2t_A           78 PQLHFEMGLLAMS   90 (359)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999887775544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.51  E-value=0.00036  Score=65.36  Aligned_cols=85  Identities=19%  Similarity=0.141  Sum_probs=58.3

Q ss_pred             EEEEEcccchHHHHHHHHHhchh--hhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~--~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      +|||||+|.||..-+++++....  ..-.+.+++...+.+ +...+.+.+.|+..   ...+.+|+++  +.|+|++++|
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~IatP  103 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPEVDVVSVTTP  103 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTTCCEEEECSC
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCCCcEEEECCC
Confidence            79999999999988887765310  001144655444444 34456677777642   2568999986  5799999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++..+.+.
T Consensus       104 ~~~H~~~a~~al~  116 (393)
T 4fb5_A          104 NQFHAEMAIAALE  116 (393)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            9999887765544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.51  E-value=0.00014  Score=68.84  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=61.0

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH--hhhccCCEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~--e~i~~ADvI  182 (313)
                      .+|+| +++.|||.|. +|..+|+.|...      |..|.+..++..                   +++  +.+++||+|
T Consensus       161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T~-------------------~l~l~~~~~~ADIV  214 (300)
T 4a26_A          161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGTS-------------------TEDMIDYLRTADIV  214 (300)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTSC-------------------HHHHHHHHHTCSEE
T ss_pred             CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCCC-------------------CchhhhhhccCCEE
Confidence            57999 9999999987 799999999998      988877654321                   344  789999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      |.+++-..   ++.  .+++|+|++|+|++-
T Consensus       215 I~Avg~p~---~I~--~~~vk~GavVIDvgi  240 (300)
T 4a26_A          215 IAAMGQPG---YVK--GEWIKEGAAVVDVGT  240 (300)
T ss_dssp             EECSCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred             EECCCCCC---CCc--HHhcCCCcEEEEEec
Confidence            99999532   232  255799999999874

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.50  E-value=0.0002  Score=69.96  Aligned_cols=91  Identities=9%  Similarity=0.101  Sum_probs=61.5

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceec-CCCcCCHHhhhc--cCCEEEEcc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-NGTLGDIYETIS--GSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~-~~~~~~~~e~i~--~ADvIiLav  186 (313)
                      .+|||||+|.||. .+++.+++.     .+.+++...+.+... .+.+.+.|+... .....+.+++++  +.|+|++++
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat  158 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL  158 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence            6899999999997 899988764     145655444554433 344556675310 002458889887  799999999


Q ss_pred             cchhHHHHHHHHHhcCCCCc-EEEE
Q 021356          187 SDAAQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      |+..+.+++.+.+.   .|+ +++.
T Consensus       159 p~~~h~~~~~~al~---aGk~Vl~E  180 (433)
T 1h6d_A          159 PNSLHAEFAIRAFK---AGKHVMCE  180 (433)
T ss_dssp             CGGGHHHHHHHHHH---TTCEEEEC
T ss_pred             CchhHHHHHHHHHH---CCCcEEEc
Confidence            99999887765543   354 4443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.49  E-value=0.00044  Score=65.65  Aligned_cols=84  Identities=17%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||+|.||.. .+..+++.     .+.+++...+.+.+..  +.+. +...    ..+.+++++  +.|+|++++|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp   76 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKV--KRDLPDVTV----IASPEAAVQHPDVDLVVIASP   76 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHH--HHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHH--HhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence            58999999999997 67777664     1566654555544322  2333 3332    568999998  7899999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEE
Q 021356          188 DAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +..+.++..+.+.   .|+-|+
T Consensus        77 ~~~H~~~~~~al~---aGk~Vl   95 (364)
T 3e82_A           77 NATHAPLARLALN---AGKHVV   95 (364)
T ss_dssp             GGGHHHHHHHHHH---TTCEEE
T ss_pred             hHHHHHHHHHHHH---CCCcEE
Confidence            9999887765443   355443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.46  E-value=0.00025  Score=66.67  Aligned_cols=78  Identities=21%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|. +|..+|+.|...      |..|.+..++                   ..++++.+++||+||.
T Consensus       157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~  210 (286)
T 4a5o_A          157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV  210 (286)
T ss_dssp             CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred             CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence            57899 9999999886 799999999998      8887766432                   1267889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +++-..   ++.  .+++|||++|+|++--
T Consensus       211 Avg~p~---~I~--~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          211 AAGKPG---LVK--GEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             CCCCTT---CBC--GGGSCTTCEEEECCSC
T ss_pred             CCCCCC---CCC--HHHcCCCeEEEEeccc
Confidence            998432   232  2567999999998743

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.46  E-value=0.0003  Score=66.60  Aligned_cols=93  Identities=15%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceecC--------------CCcCCHHhhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEEN--------------GTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~--------------~~~~~~~e~i  176 (313)
                      .+|||||+|.||..+++.|...     .+++++...+.+.+.. ..+...|+....              ....+.++++
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~   77 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL   77 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence            5899999999999999999775     1456544444433333 344455532100              0124778888


Q ss_pred             ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       177 ~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .+.|+|++++|...+.+.....+   +.|+.|++.+
T Consensus        78 ~~vDvV~~aTp~~~h~~~a~~~l---~aGk~Vi~sa  110 (334)
T 2czc_A           78 EKVDIIVDATPGGIGAKNKPLYE---KAGVKAIFQG  110 (334)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHH---HHTCEEEECT
T ss_pred             cCCCEEEECCCccccHHHHHHHH---HcCCceEeec
Confidence            89999999999988777665433   3355555543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.45  E-value=0.00043  Score=65.29  Aligned_cols=93  Identities=20%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             CEEEEEcccchHHHHHHHHHh-chhhhcCCcEEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhh-----ccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETI-----SGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~~~~~~~e~i-----~~ADvIi  183 (313)
                      .+|||||+|.+|..+++.+.+ .     .+.+++...+.+++.  .+.+.+.|...   ...+.++++     ++.|+|+
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~-----~~~elvav~d~~~~~~~~~~a~~~g~~~---~~~~~e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNA-----KYLEMGAMVGIDAASDGLARAQRMGVTT---TYAGVEGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHC-----SSEEEEEEECSCTTCHHHHHHHHTTCCE---ESSHHHHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhC-----cCeEEEEEEeCChhhhHHHHHHHcCCCc---ccCCHHHHHhccCCCCCcEEE
Confidence            689999999999999999855 3     156665555555443  56677777642   023556665     4589999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++|...+.++..+.... ++|+.|++...
T Consensus        77 ~atp~~~h~~~a~~al~a-~~Gk~Vi~ekp  105 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQA-KPGIRLIDLTP  105 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred             ECCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence            999987777766654432 34777776443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.43  E-value=0.00099  Score=62.86  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=56.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHH-HH--HC-------CceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-AR--AA-------GFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~--~~-------G~~~~~~~~~~~~e~i~~AD  180 (313)
                      +||+|||.|.||.++|..|...      |+ +|. ..|.+++..+. +.  +.       ....  ....+. +.+++||
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~-L~Di~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD   74 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK------NLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGAD   74 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCEEE-EECSSSSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCeEE-EEeCCHHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCC
Confidence            7999999999999999999988      87 744 44444432221 11  11       1110  012455 7899999


Q ss_pred             EEEEcc--cch-------------------hHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLI--SDA-------------------AQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLav--P~~-------------------a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +||+++  |..                   ...++++++.++. |+++|+.++
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t  126 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVT  126 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            999998  421                   1223445555554 777776543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.42  E-value=0.00026  Score=66.21  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=57.7

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhh---cCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI  186 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~---~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLav  186 (313)
                      +|||||+|.||...+.+++.. .+.   ..+.+++...+.+++ ..+.+.+.|+..   ...+.+|+++  +.|+|++++
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~t   83 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCT   83 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECS
T ss_pred             cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeC
Confidence            689999999999988888764 110   012245444454443 345566677642   2568999985  579999999


Q ss_pred             cchhHHHHHHHHHh
Q 021356          187 SDAAQADNYEKIFS  200 (313)
Q Consensus       187 P~~a~~~vi~ei~~  200 (313)
                      |+..+.++..+.+.
T Consensus        84 P~~~H~~~~~~al~   97 (390)
T 4h3v_A           84 PGDSHAEIAIAALE   97 (390)
T ss_dssp             CGGGHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            99999987765544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.42  E-value=0.00027  Score=68.47  Aligned_cols=89  Identities=16%  Similarity=0.222  Sum_probs=61.5

Q ss_pred             CEEEEEcccc---hHHHHHHHHHhchhhhcCC-cEEEE-EecCCc-ccHHHHHHCCceecCCCcCCHHhhhcc-------
Q 021356          112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV-GLRKGS-RSFAEARAAGFTEENGTLGDIYETISG-------  178 (313)
Q Consensus       112 kkIgIIG~G~---mG~AlA~~Lr~~~~~~~~G-~~Viv-g~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~-------  178 (313)
                      .+|||||+|.   ||...+..++..      + ++++. ..+.++ +..+.+.+.|+.. .....+.++++++       
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~  110 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG  110 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence            5899999999   999999888776      4 56553 334443 3345566677731 0125689999876       


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCc-EEEE
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      .|+|++++|+..+.+++.+.+.   .|+ +++.
T Consensus       111 vD~V~I~tp~~~H~~~~~~al~---aGkhVl~E  140 (417)
T 3v5n_A          111 IEAVAIVTPNHVHYAAAKEFLK---RGIHVICD  140 (417)
T ss_dssp             CSEEEECSCTTSHHHHHHHHHT---TTCEEEEE
T ss_pred             CcEEEECCCcHHHHHHHHHHHh---CCCeEEEE
Confidence            9999999999999887765543   455 4444

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.42  E-value=0.00052  Score=67.04  Aligned_cols=96  Identities=14%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-hccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-i~~ADvIiLavP  187 (313)
                      ++|.|||+|.+|..+++.|++.      |++|++. +.+++..+.+++.|+..-.+...+.+   ++ +.+||+||++++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvI-d~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~   77 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID   77 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT------TCCEEEE-ECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHC------CCCEEEE-ECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence            6799999999999999999999      9987554 45556666777777632112222332   23 678999999999


Q ss_pred             chhHHHHHHHHHhcCCCC-cEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPN-SILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~g-aiLid~~Gv  214 (313)
                      +......+-.....+.|+ .||.-+..-
T Consensus        78 ~~~~n~~i~~~ar~~~p~~~Iiara~~~  105 (413)
T 3l9w_A           78 DPQTNLQLTEMVKEHFPHLQIIARARDV  105 (413)
T ss_dssp             SHHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred             ChHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            877665555555556666 455545443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.41  E-value=0.00047  Score=65.19  Aligned_cols=78  Identities=12%  Similarity=0.207  Sum_probs=55.8

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||+|.||.. .+..+++.     .+++++...+.+.+  +.+.+. +...    ..+.+++++  +.|+|++++|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp   74 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP   74 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred             ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence            58999999999997 67777654     25666545555442  234445 3332    568899997  7899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++....+.
T Consensus        75 ~~~H~~~~~~al~   87 (358)
T 3gdo_A           75 SGLHYEHTMACIQ   87 (358)
T ss_dssp             TTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999887765544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.41  E-value=0.00013  Score=68.02  Aligned_cols=98  Identities=19%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhhccC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGS  179 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~e~i~~A  179 (313)
                      .+++| +++.|+|.|-+|.+++..|.+.      |. +|.+.+|..++..+.+.+.+     .........++++.++++
T Consensus       123 ~~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~  195 (283)
T 3jyo_A          123 PNAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAA  195 (283)
T ss_dssp             TTCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHS
T ss_pred             cCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcC
Confidence            46889 9999999999999999999998      98 68888776544433333321     110000123677888999


Q ss_pred             CEEEEcccchhHHH---HHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAAQAD---NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~---vi~ei~~~mk~gaiLid~~  212 (313)
                      |+||-+||......   .+.  ...++++.+|.|+.
T Consensus       196 DiVInaTp~Gm~~~~~~pi~--~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          196 DGVVNATPMGMPAHPGTAFD--VSCLTKDHWVGDVV  229 (283)
T ss_dssp             SEEEECSSTTSTTSCSCSSC--GGGCCTTCEEEECC
T ss_pred             CEEEECCCCCCCCCCCCCCC--HHHhCCCCEEEEec
Confidence            99999999654321   011  24567777777764

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.41  E-value=0.00025  Score=66.66  Aligned_cols=77  Identities=16%  Similarity=0.081  Sum_probs=61.2

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|. +|..+|+.|...      |..|.+..+.                   ..++.+.+++||+||.
T Consensus       155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~  208 (288)
T 1b0a_A          155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV  208 (288)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred             CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence            47899 9999999996 599999999998      8887766422                   2377899999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++-..   ++.  .+++|||++|+|++-
T Consensus       209 Avg~p~---lI~--~~~vk~GavVIDVgi  232 (288)
T 1b0a_A          209 AVGKPG---FIP--GDWIKEGAIVIDVGI  232 (288)
T ss_dssp             CSCCTT---CBC--TTTSCTTCEEEECCC
T ss_pred             CCCCcC---cCC--HHHcCCCcEEEEccC
Confidence            998443   222  134699999999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.39  E-value=0.00038  Score=65.86  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|+ +|..+|+.|...      |..|.+..+.                   ..++.+.+++||+||.
T Consensus       161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~  214 (301)
T 1a4i_A          161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV  214 (301)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred             CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence            47899 9999999996 799999999998      8887765322                   2378899999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +++-..   ++.  .+++|||++|+|++--
T Consensus       215 Avg~p~---~I~--~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          215 ATGQPE---MVK--GEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             CCCCTT---CBC--GGGSCTTCEEEECCCB
T ss_pred             CCCCcc---cCC--HHHcCCCcEEEEccCC
Confidence            998643   222  2447999999999743

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.38  E-value=0.00061  Score=66.44  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=57.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcC----CHHhhhc--cCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLG----DIYETIS--GSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~----~~~e~i~--~ADv  181 (313)
                      .+|||||+|.||...+..+++.     .+.+++...+.+++..+.+.    +.|+.. .....    +.+++++  +.|+
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~   94 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDA   94 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCE
T ss_pred             ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCE
Confidence            6899999999999999988764     15676555555544333322    345310 00144    8899987  5899


Q ss_pred             EEEcccchhHHHHHHHHHh
Q 021356          182 VLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~  200 (313)
                      |++++|+..+.++..+.+.
T Consensus        95 V~i~tp~~~h~~~~~~al~  113 (444)
T 2ixa_A           95 VFVSSPWEWHHEHGVAAMK  113 (444)
T ss_dssp             EEECCCGGGHHHHHHHHHH
T ss_pred             EEEcCCcHHHHHHHHHHHH
Confidence            9999999998887765443

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.38  E-value=0.00082  Score=63.78  Aligned_cols=80  Identities=9%  Similarity=0.009  Sum_probs=58.6

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhcc--CCEEEEccc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP  187 (313)
                      .+|||||+|.+|. .++..++..      +.+++...+.+++. .+.+.+.|...   ...+.+|++++  .|+|++++|
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp   97 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV   97 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred             cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence            6899999999994 567777665      88866555555433 34566666431   25699999975  899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.+++.+.+.
T Consensus        98 ~~~H~~~~~~al~  110 (361)
T 3u3x_A           98 SSERAELAIRAMQ  110 (361)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999887765544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.37  E-value=0.00043  Score=65.14  Aligned_cols=78  Identities=9%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhcc--CCEEEEccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~--ADvIiLavP  187 (313)
                      .+|||||+|.||.. .+..+++.     .+.+++...+.+.+..+  .+. +..    ...+.++++++  .|+|++++|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~--~~~~~~~----~~~~~~~ll~~~~vD~V~i~tp   76 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH--ADWPAIP----VVSDPQMLFNDPSIDLIVIPTP   76 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH--TTCSSCC----EESCHHHHHHCSSCCEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH--hhCCCCc----eECCHHHHhcCCCCCEEEEeCC
Confidence            58999999999997 77777664     15666544555433221  122 222    25689999975  899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++..+.+.
T Consensus        77 ~~~H~~~~~~al~   89 (352)
T 3kux_A           77 NDTHFPLAQSALA   89 (352)
T ss_dssp             TTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999887765543

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.34  E-value=0.00042  Score=65.54  Aligned_cols=78  Identities=10%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhcc--CCEEEEccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~--ADvIiLavP  187 (313)
                      .+|||||+|.||.. .+..+++.     .+.+++...+.+.+.  .+.+. +...    ..+.++++++  .|+|++++|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp   74 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP   74 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred             eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence            58999999999997 67777664     156665445554432  23334 3332    5688999976  899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++..+.+.
T Consensus        75 ~~~H~~~~~~al~   87 (362)
T 3fhl_A           75 DNTHYEYAGMALE   87 (362)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999887765544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.31  E-value=0.0006  Score=64.02  Aligned_cols=82  Identities=15%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             CEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||+| .+|...+..+++.    +.+.+++...+.+++. .+.+.+.|...   ...+.+|+++  +.|+|++++|
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp   91 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP   91 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred             eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence            789999999 8999999998764    1155665445554433 34455666521   2568999986  5899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++..+.+.
T Consensus        92 ~~~H~~~~~~al~  104 (340)
T 1zh8_A           92 VELNLPFIEKALR  104 (340)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            9998887765544

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.31  E-value=0.00014  Score=65.43  Aligned_cols=80  Identities=13%  Similarity=0.285  Sum_probs=52.3

Q ss_pred             CEEEEEcccchHHHHHHH--HHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~--Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++++|||+|++|.++++.  ....      |++++...+.++..... ...|+...  ...++++++++.|+|++++|..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~  156 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV  156 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence            689999999999999994  3334      77776666665432211 11233211  1357888887779999999998


Q ss_pred             hHHHHHHHHHh
Q 021356          190 AQADNYEKIFS  200 (313)
Q Consensus       190 a~~~vi~ei~~  200 (313)
                      ...++.+.+..
T Consensus       157 ~~~ei~~~l~~  167 (215)
T 2vt3_A          157 AAQSITDRLVA  167 (215)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            88777776654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.30  E-value=5.7e-05  Score=70.59  Aligned_cols=92  Identities=13%  Similarity=0.039  Sum_probs=61.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|-+|.+++..|.+.      |. +|.+.+|..++..+.+.+.+...    ..++++ + ++|+||-
T Consensus       118 ~~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIn  184 (282)
T 3fbt_A          118 VEIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIIN  184 (282)
T ss_dssp             CCCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEE
T ss_pred             CCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEE
Confidence            35789 9999999999999999999998      98 78888876443333332222121    223334 4 8999999


Q ss_pred             cccchhHHH----HHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQAD----NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~----vi~ei~~~mk~gaiLid~~  212 (313)
                      +||.....+    .+.  ...++++.+|+|+.
T Consensus       185 aTp~Gm~~~~~~~pi~--~~~l~~~~~v~Dlv  214 (282)
T 3fbt_A          185 CTPKGMYPKEGESPVD--KEVVAKFSSAVDLI  214 (282)
T ss_dssp             CSSTTSTTSTTCCSSC--HHHHTTCSEEEESC
T ss_pred             CCccCccCCCccCCCC--HHHcCCCCEEEEEe
Confidence            998753221    111  12356788888874

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.30  E-value=0.00027  Score=66.39  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             CEEEEEcccchHHH-HHHHH-HhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhcc--CCEEEEcc
Q 021356          112 NQIGVIGWGSQGPA-QAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~L-r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~--ADvIiLav  186 (313)
                      .+|||||+|.||.. .+..+ ...     .+.+++...+++++..+.+.+. +...    ..+.++++++  .|+|++++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~t   73 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPEEQAPIYSHIHF----TSDLDEVLNDPDVKLVVVCT   73 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGGGGSGGGTTCEE----ESCTHHHHTCTTEEEEEECS
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHHHHHHhcCCCce----ECCHHHHhcCCCCCEEEEcC
Confidence            68999999999986 44423 322     2667664444443322222222 4432    5688999976  89999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEE
Q 021356          187 SDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      |+..+.++..+.+.   .|+-|+
T Consensus        74 p~~~h~~~~~~al~---aGk~Vl   93 (345)
T 3f4l_A           74 HADSHFEYAKRALE---AGKNVL   93 (345)
T ss_dssp             CGGGHHHHHHHHHH---TTCEEE
T ss_pred             ChHHHHHHHHHHHH---cCCcEE
Confidence            99999887765443   455444

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.30  E-value=0.00017  Score=68.77  Aligned_cols=100  Identities=10%  Similarity=0.028  Sum_probs=68.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee---cCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~---~~~~~~~~~e~i~~ADvI  182 (313)
                      ..+++ +++.|+|.|.+|.+.++.++..      |.+|++.+++ .+..+.+.+.+...   .+....++.+.++++|+|
T Consensus       163 ~~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV  234 (361)
T 1pjc_A          163 PGVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDIN-VERLSYLETLFGSRVELLYSNSAEIETAVAEADLL  234 (361)
T ss_dssp             TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEE
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEE
Confidence            35788 9999999999999999999999      9987766654 33334444333210   000012455677899999


Q ss_pred             EEcccchhH--HHH-HHHHHhcCCCCcEEEEecC
Q 021356          183 LLLISDAAQ--ADN-YEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       183 iLavP~~a~--~~v-i~ei~~~mk~gaiLid~~G  213 (313)
                      |-+++....  ..+ .++..+.|+++.+|+|++.
T Consensus       235 I~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          235 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            999975331  122 3456778999999998763

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.29  E-value=0.00095  Score=62.63  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCc---ccHHHHHHC--CceecCCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~---~s~~~A~~~--G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      +||+|||.|.||..+|..+...      |+  ++.+.+....   ...+.....  .+..    ..+. +.+++||+||+
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEEE
Confidence            8999999999999999999877      77  7665554331   111222111  1221    2465 77999999999


Q ss_pred             cccc-------------hh--HHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISD-------------AA--QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~-------------~a--~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +.-.             +.  ..++++++.++. |+++|+.++
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s  125 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS  125 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence            9721             11  123445555554 778776544

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.27  E-value=0.001  Score=62.24  Aligned_cols=69  Identities=16%  Similarity=0.129  Sum_probs=44.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      |||+|||.|.+|.++|..|...      |+  ++.+.++........+.+       .+....-....+ .+++++||+|
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiV   73 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII   73 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEE
Confidence            6899999999999999999888      77  666555443221111111       111000000234 7899999999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      |++..
T Consensus        74 Viaag   78 (294)
T 1oju_A           74 VVTAG   78 (294)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99874

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.25  E-value=0.00043  Score=66.45  Aligned_cols=86  Identities=19%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhch---hhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSL---AEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~---~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLa  185 (313)
                      .+|||||+|.||...+.++++..   .+...+.+++...+.+++ ..+.+.+.|+..   ...+.+|+++  +.|+|+++
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~  103 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT  103 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence            48999999999999999888640   001113455544455443 345566677642   2568999985  57999999


Q ss_pred             ccchhHHHHHHHHHh
Q 021356          186 ISDAAQADNYEKIFS  200 (313)
Q Consensus       186 vP~~a~~~vi~ei~~  200 (313)
                      +|+..+.++..+.+.
T Consensus       104 tp~~~H~~~~~~al~  118 (412)
T 4gqa_A          104 SPNHLHYTMAMAAIA  118 (412)
T ss_dssp             SCGGGHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999999887765544

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.23  E-value=0.00064  Score=64.52  Aligned_cols=97  Identities=14%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             ccCCC-CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021356          107 AFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       107 ~l~Gi-kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .++|- |||.|||.|.+|..+++.|.+       ..+|.++.+. .+..+.+.+..  +..+-.....+.++++++|+||
T Consensus        11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-------~~~v~~~~~~-~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi   82 (365)
T 3abi_A           11 HIEGRHMKVLILGAGNIGRAIAWDLKD-------EFDVYIGDVN-NENLEKVKEFATPLKVDASNFDKLVEVMKEFELVI   82 (365)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESC-HHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccCCccEEEEECCCHHHHHHHHHHhc-------CCCeEEEEcC-HHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence            44442 689999999999999999865       4567666654 33333333221  1110001123557889999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .++|+.....+.+...   +.|+-++|.+..
T Consensus        83 ~~~p~~~~~~v~~~~~---~~g~~yvD~s~~  110 (365)
T 3abi_A           83 GALPGFLGFKSIKAAI---KSKVDMVDVSFM  110 (365)
T ss_dssp             ECCCGGGHHHHHHHHH---HHTCEEEECCCC
T ss_pred             EecCCcccchHHHHHH---hcCcceEeeecc
Confidence            9999987766666433   235556666543

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.22  E-value=0.00041  Score=64.14  Aligned_cols=85  Identities=11%  Similarity=0.152  Sum_probs=56.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~~  189 (313)
                      .+|||||+|.||...++.+....  ...+.+++...+++.    .+.+.|+.     ..+.+|+++  +.|+|++++|+.
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~   76 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS   76 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred             ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence            68999999999999998886520  011555543333322    12234543     358899886  689999999999


Q ss_pred             hHHHHHHHHHhcCCCCc-EEEE
Q 021356          190 AQADNYEKIFSCMKPNS-ILGL  210 (313)
Q Consensus       190 a~~~vi~ei~~~mk~ga-iLid  210 (313)
                      .+.++..+.+.   .|+ +++.
T Consensus        77 ~H~~~~~~al~---aGkhVl~E   95 (294)
T 1lc0_A           77 SHEDYIRQFLQ---AGKHVLVE   95 (294)
T ss_dssp             GHHHHHHHHHH---TTCEEEEE
T ss_pred             hHHHHHHHHHH---CCCcEEEe
Confidence            98887765544   355 5555

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.21  E-value=0.0022  Score=59.91  Aligned_cols=66  Identities=18%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHH-HHH--HCC-------ceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA-EAR--AAG-------FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~-~A~--~~G-------~~~~~~~~~~~~e~i~~AD  180 (313)
                      +||+|||.|.||.+++..+...      |+ ++ +..|.+++..+ .+.  ..+       ...  ....+. +.+++||
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v-~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d~-~a~~~aD   72 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK------ELGDI-VLLDIVEGVPQGKALDLYEASPIEGFDVRV--TGTNNY-ADTANSD   72 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCSEE-EEECSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESCG-GGGTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCCeE-EEEeCCccHHHHHHHhHHHhHhhcCCCeEE--EECCCH-HHHCCCC
Confidence            6999999999999999999888      86 74 44444433221 111  111       100  011455 7899999


Q ss_pred             EEEEccc
Q 021356          181 LVLLLIS  187 (313)
Q Consensus       181 vIiLavP  187 (313)
                      +||+++.
T Consensus        73 ~Vi~a~g   79 (309)
T 1ur5_A           73 VIVVTSG   79 (309)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999973

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=97.20  E-value=0.0025  Score=60.21  Aligned_cols=106  Identities=15%  Similarity=0.207  Sum_probs=82.0

Q ss_pred             CCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCchh----hhhhhcccCCCCCccEEE
Q 021356          160 AGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVIA  234 (313)
Q Consensus       160 ~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~l----~~~~~~~~~l~~~i~vV~  234 (313)
                      .|+..    +++..|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+..    ..++.   .-++|+.+..
T Consensus       127 aGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~---l~R~DvgIsS  199 (358)
T 2b0j_A          127 VGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD---LGREDLNITS  199 (358)
T ss_dssp             GTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH---TTCTTSEEEE
T ss_pred             cCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH---hCcccCCeec
Confidence            56654    5688899999999999999877 67899999999999999999887632    22232   2267899999


Q ss_pred             eccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .|| +..+.+     .|       ..  +.-.+.++++.++...+|.++.|..
T Consensus       200 ~HP-aaVPgt-----~G-------q~--~~g~~yAtEEqIeklveLaksa~k~  237 (358)
T 2b0j_A          200 YHP-GCVPEM-----KG-------QV--YIAEGYASEEAVNKLYEIGKIARGK  237 (358)
T ss_dssp             CBC-SSCTTT-----CC-------CE--EEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred             cCC-CCCCCC-----CC-------cc--ccccccCCHHHHHHHHHHHHHhCCC
Confidence            999 444443     23       22  3556688999999999999999954

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.19  E-value=0.0011  Score=62.29  Aligned_cols=94  Identities=12%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH--CCcee-cCC-CcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-ENG-TLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~-~~~-~~~~~~e~i~~ADvIiLa  185 (313)
                      +||+|||.|.+|.+++..|...      ++  ++.+.+....+....+.+  .+... .+- ...+..+.+++||+||++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~   81 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT   81 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence            7899999999999999999887      76  665554332222222222  22100 000 011236779999999999


Q ss_pred             ccchh----------------HHHHHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAA----------------QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a----------------~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .+...                ..++.+++.++ .|+++|+.++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t  123 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS  123 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Confidence            87432                12333445555 5788777653

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.19  E-value=0.0014  Score=62.46  Aligned_cols=96  Identities=15%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecC-----------C--C-cCCHHhh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEEN-----------G--T-LGDIYET  175 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~-----------~--~-~~~~~e~  175 (313)
                      +.+|||+|+|.||+.+++.|.+.     .+++++...+.... ....+...|+....           .  . ..+.+++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~   75 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM   75 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred             CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence            36899999999999999998763     15665444443322 22233333211000           0  0 0245667


Q ss_pred             hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +.++|+|+.++|.....+.....++   .|+.|+|.++-
T Consensus        76 ~~~vDvV~~atp~~~~~~~a~~~l~---aG~~VId~sp~  111 (337)
T 1cf2_P           76 LDEADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQGGE  111 (337)
T ss_dssp             HHTCSEEEECCSTTHHHHHHHHHHH---HTCCEEECTTS
T ss_pred             hcCCCEEEECCCchhhHHHHHHHHH---cCCEEEEecCC
Confidence            7899999999999888777765543   35557776654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.16  E-value=0.0013  Score=62.23  Aligned_cols=68  Identities=21%  Similarity=0.168  Sum_probs=44.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~---------G~~~~~~~~~~~~e~i~~AD  180 (313)
                      |||+|||.|.||.++|..|...      |+  ++.+.+....+....+.+.         ....   ...+..+.+++||
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD   71 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD   71 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence            6899999999999999999888      76  6655554433222111111         1111   0124568899999


Q ss_pred             EEEEcccc
Q 021356          181 LVLLLISD  188 (313)
Q Consensus       181 vIiLavP~  188 (313)
                      +||++.+.
T Consensus        72 vVii~ag~   79 (314)
T 3nep_X           72 VCIITAGL   79 (314)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998753

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.13  E-value=0.00072  Score=63.24  Aligned_cols=80  Identities=10%  Similarity=0.061  Sum_probs=54.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-cc-H---HHHHHCCceecCCCcCCHHhhhcc--CCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RS-F---AEARAAGFTEENGTLGDIYETISG--SDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s-~---~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiL  184 (313)
                      .+|||||+|.+|+..++.+ ..      +.+++...+.+. +. .   +.+.+.|+..  ....+.+|++++  .|+|++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I   73 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI   73 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred             eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence            6899999999999777776 44      777665555433 22 2   2223346521  125689999874  899999


Q ss_pred             cccchhHHHHHHHHHh
Q 021356          185 LISDAAQADNYEKIFS  200 (313)
Q Consensus       185 avP~~a~~~vi~ei~~  200 (313)
                      ++|+..+.++..+.+.
T Consensus        74 ~tp~~~H~~~~~~al~   89 (337)
T 3ip3_A           74 NTVFSLNGKILLEALE   89 (337)
T ss_dssp             CSSHHHHHHHHHHHHH
T ss_pred             eCCcchHHHHHHHHHH
Confidence            9999998887765544

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.13  E-value=0.0034  Score=59.79  Aligned_cols=94  Identities=16%  Similarity=0.143  Sum_probs=59.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCC-------------CcCCHHhhhc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENG-------------TLGDIYETIS  177 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~-------------~~~~~~e~i~  177 (313)
                      .+|||+|+|.||+.+++.|.+.     .+++++...+.... ....+.+.|+.....             ...+.+++++
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~   76 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK   76 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence            5899999999999999998765     25665544444332 234455555432000             0113345556


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++|+|+.++|.....+..+...+   .|+.+++.++
T Consensus        77 ~vDvV~~aTp~~~s~~~a~~~~~---aG~kvV~~sa  109 (340)
T 1b7g_O           77 TSDIVVDTTPNGVGAQYKPIYLQ---LQRNAIFQGG  109 (340)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHH---TTCEEEECTT
T ss_pred             CCCEEEECCCCchhHHHHHHHHH---cCCeEEEeCC
Confidence            89999999999887776665443   4666666554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.12  E-value=0.00046  Score=65.41  Aligned_cols=99  Identities=11%  Similarity=0.061  Sum_probs=63.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC---CcccHHHHHH----CCceecCCCcCC---HHh
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARA----AGFTEENGTLGD---IYE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~---~~~s~~~A~~----~G~~~~~~~~~~---~~e  174 (313)
                      .+++| +++.|+|.|-+|.+++..|.+.      |. +|.+..|.   .++..+.+.+    .+....-....+   +.+
T Consensus       150 ~~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~  222 (315)
T 3tnl_A          150 HDIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK  222 (315)
T ss_dssp             CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             CCccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh
Confidence            46789 9999999999999999999998      98 78888887   3332333322    121100001222   446


Q ss_pred             hhccCCEEEEcccchhHHH----HHHHHHhcCCCCcEEEEec
Q 021356          175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~----vi~ei~~~mk~gaiLid~~  212 (313)
                      .++++|+||-++|.....+    .+. ....++++.+|+|+.
T Consensus       223 ~l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          223 EIAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDVV  263 (315)
T ss_dssp             HHHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEESC
T ss_pred             hhcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEec
Confidence            6789999999999654321    010 123466777777754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.12  E-value=0.00095  Score=62.53  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             cccCCCCEEEEEcccch-HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~m-G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| +++.|||.|.+ |..+|+.|...    +.|..|.+..++                   ..++.+.+++||+||.
T Consensus       154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~  209 (281)
T 2c2x_A          154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA  209 (281)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred             CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence            47999 99999999976 99999998765    003466655322                   2378899999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +++-..   ++.  .+++|+|++|+|++-
T Consensus       210 Avg~p~---~I~--~~~vk~GavVIDVgi  233 (281)
T 2c2x_A          210 AVGVAH---LLT--ADMVRPGAAVIDVGV  233 (281)
T ss_dssp             CSCCTT---CBC--GGGSCTTCEEEECCE
T ss_pred             CCCCCc---ccC--HHHcCCCcEEEEccC
Confidence            998443   222  244799999999873

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.10  E-value=0.0022  Score=60.90  Aligned_cols=70  Identities=19%  Similarity=0.145  Sum_probs=45.5

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhhc
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETIS  177 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~---------~G~~~~~~~~~~~~e~i~  177 (313)
                      ++. +||+|||.|.+|.++|..|...      |+ ++.+.+....+....+.+         .....  ....+. ++++
T Consensus         5 m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v--~~t~d~-~a~~   74 (324)
T 3gvi_A            5 MAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKF--TGANDY-AAIE   74 (324)
T ss_dssp             -CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCE--EEESSG-GGGT
T ss_pred             CcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEE--EEeCCH-HHHC
Confidence            455 8999999999999999999888      77 776665544322111111         11111  001344 8899


Q ss_pred             cCCEEEEccc
Q 021356          178 GSDLVLLLIS  187 (313)
Q Consensus       178 ~ADvIiLavP  187 (313)
                      +||+||++..
T Consensus        75 ~aDiVIiaag   84 (324)
T 3gvi_A           75 GADVVIVTAG   84 (324)
T ss_dssp             TCSEEEECCS
T ss_pred             CCCEEEEccC
Confidence            9999999964

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.08  E-value=0.0002  Score=65.95  Aligned_cols=93  Identities=12%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc---------eecCCCcCCHHhhhc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---------TEENGTLGDIYETIS  177 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---------~~~~~~~~~~~e~i~  177 (313)
                      +++| +++.|+|.|-||.++++.|.+.      | +|++..|+.++..+.+.+.+.         .+    ..+..+.+.
T Consensus       125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d----~~~~~~~~~  192 (287)
T 1nvt_A          125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK----FSGLDVDLD  192 (287)
T ss_dssp             CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE----EECTTCCCT
T ss_pred             CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeEE----EeeHHHhhC
Confidence            5789 9999999999999999999998      9 888877754333333322110         11    123356678


Q ss_pred             cCCEEEEcccchhHHH----HHHHHHhcCCCCcEEEEec
Q 021356          178 GSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~----vi~ei~~~mk~gaiLid~~  212 (313)
                      ++|+||.++|......    .+. -.+.++++.+++|+.
T Consensus       193 ~~DilVn~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~  230 (287)
T 1nvt_A          193 GVDIIINATPIGMYPNIDVEPIV-KAEKLREDMVVMDLI  230 (287)
T ss_dssp             TCCEEEECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred             CCCEEEECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence            9999999998765321    010 124567788888765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.07  E-value=0.0018  Score=61.56  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=43.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcc-cHHHH--HHCCcee--cC-CCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR-SFAEA--RAAGFTE--EN-GTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~-s~~~A--~~~G~~~--~~-~~~~~~~e~i~~ADvIi  183 (313)
                      +||+|||.|.||.++|..|...      |+  ++.+.+ .+++ ....+  ...+...  .+ ....+..+.+++||+||
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D-~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVv   78 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQ------GITDELVVID-VNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVC   78 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEEC-SCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEe-cchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEE
Confidence            8999999999999999999988      76  555444 4332 11111  1112110  00 00123357899999999


Q ss_pred             Eccc
Q 021356          184 LLIS  187 (313)
Q Consensus       184 LavP  187 (313)
                      ++..
T Consensus        79 i~ag   82 (326)
T 3pqe_A           79 ICAG   82 (326)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            9874

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.06  E-value=0.0012  Score=61.73  Aligned_cols=91  Identities=12%  Similarity=0.214  Sum_probs=66.0

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~  188 (313)
                      .+++|+|. |.||..+++++++.      |+++++...+.....   .-.|+..    +.+++|+.+  +.|++++++|+
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~   80 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA   80 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence            45778898 99999999999998      888555555432100   0146553    468889888  89999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      ....+++++..+. ....+|+.+.|+..
T Consensus        81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~  107 (294)
T 2yv1_A           81 PFAKDAVFEAIDA-GIELIVVITEHIPV  107 (294)
T ss_dssp             HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred             HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence            9999988877654 23345667888853

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.06  E-value=0.0029  Score=59.84  Aligned_cols=67  Identities=18%  Similarity=0.142  Sum_probs=44.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH--HCC-------ceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~--~~G-------~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||.|.||.++|..|...      ++ ++.+.+....+....+.  +..       ...   ...+..+.+++||+
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~~aDv   76 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLENSDV   76 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHCCCCE
Confidence            8999999999999999999887      76 76655544332221121  111       111   01133578999999


Q ss_pred             EEEccc
Q 021356          182 VLLLIS  187 (313)
Q Consensus       182 IiLavP  187 (313)
                      ||++..
T Consensus        77 VIi~ag   82 (321)
T 3p7m_A           77 VIVTAG   82 (321)
T ss_dssp             EEECCS
T ss_pred             EEEcCC
Confidence            999863

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.05  E-value=0.00089  Score=63.51  Aligned_cols=86  Identities=12%  Similarity=0.078  Sum_probs=60.0

Q ss_pred             CEEEEEc-ccchHHH-HH----HHHHhchhhhcCC-cE----------EEEEecCCcccHHHHHHCCceecCCCcCCHHh
Q 021356          112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE  174 (313)
Q Consensus       112 kkIgIIG-~G~mG~A-lA----~~Lr~~~~~~~~G-~~----------Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e  174 (313)
                      .+||||| +|.||.. .+    +.+++.      + ..          +.+..+..++..+.+.+.|+..   ...+.+|
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~   77 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA   77 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence            5799999 9999998 77    777765      3 22          1244444444556677788741   2568999


Q ss_pred             hhcc--CCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       175 ~i~~--ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      ++++  .|+|++++|+..+.++..+.+.   .|+-|.
T Consensus        78 ll~~~~iD~V~i~tp~~~h~~~~~~al~---~Gk~V~  111 (383)
T 3oqb_A           78 ALADKNDTMFFDAATTQARPGLLTQAIN---AGKHVY  111 (383)
T ss_dssp             HHHCSSCCEEEECSCSSSSHHHHHHHHT---TTCEEE
T ss_pred             HhcCCCCCEEEECCCchHHHHHHHHHHH---CCCeEE
Confidence            9865  8999999999988887765543   455444

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.05  E-value=0.0013  Score=61.70  Aligned_cols=74  Identities=11%  Similarity=0.157  Sum_probs=55.2

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEccc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~---ADvIiLavP  187 (313)
                      .+|||||+|.||. ..+..+++.     .+.+++...+++.+      +.|+..    ..+.++++++   .|+|++++|
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp   90 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP   90 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred             ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence            6899999999998 788888875     15665544554432      246553    5689998865   899999999


Q ss_pred             chhHHHHHHHHHh
Q 021356          188 DAAQADNYEKIFS  200 (313)
Q Consensus       188 ~~a~~~vi~ei~~  200 (313)
                      +..+.++..+.+.
T Consensus        91 ~~~H~~~~~~al~  103 (330)
T 4ew6_A           91 PQYRYEAAYKALV  103 (330)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9998887765544

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.04  E-value=0.0009  Score=66.35  Aligned_cols=84  Identities=7%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiL  184 (313)
                      .+|||||+    |.||...+..|++.    ..+.+++...+.+.+ ..+.+.+.|+.. .....+.+|+++  +.|+|++
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I  114 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV  114 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence            68999999    99999999998763    116666544555443 334556667530 012568999985  6999999


Q ss_pred             cccchhHHHHHHHHHh
Q 021356          185 LISDAAQADNYEKIFS  200 (313)
Q Consensus       185 avP~~a~~~vi~ei~~  200 (313)
                      ++|+..+.+++.+.+.
T Consensus       115 ~tp~~~H~~~~~~al~  130 (479)
T 2nvw_A          115 SVKVPEHYEVVKNILE  130 (479)
T ss_dssp             CSCHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHH
Confidence            9999998887765443

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.03  E-value=0.0032  Score=59.08  Aligned_cols=93  Identities=17%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHH-HHHH--CCcee--cC-CCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARA--AGFTE--EN-GTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~-~A~~--~G~~~--~~-~~~~~~~e~i~~ADvIi  183 (313)
                      +||+|||.|.+|.+++..|...      ++  ++ +..|.+++..+ .+.+  .+...  .+ ....+..+++++||+||
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei-~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVv   79 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDEL-VIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVV   79 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------CSCSEE-EEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEE-EEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEE
Confidence            7999999999999999998877      65  54 44454432111 1111  11100  00 00114467899999999


Q ss_pred             Ecccchh----------------HHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAA----------------QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a----------------~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.+...                ..++.+++.++ .|+++|+.++
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t  123 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT  123 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence            9985321                11223344454 6888877654

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.01  E-value=0.0011  Score=64.59  Aligned_cols=83  Identities=11%  Similarity=0.142  Sum_probs=58.3

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiL  184 (313)
                      .+|||||+    |.||...++.|++.    ..+++++...+.+... .+.+.+.|+.. .....+.+++++  +.|+|++
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i   95 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI   95 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence            68999999    99999999998763    1166665455554433 34555666530 002568999986  6899999


Q ss_pred             cccchhHHHHHHHHH
Q 021356          185 LISDAAQADNYEKIF  199 (313)
Q Consensus       185 avP~~a~~~vi~ei~  199 (313)
                      ++|+..+.++....+
T Consensus        96 ~tp~~~H~~~~~~al  110 (438)
T 3btv_A           96 AIQVASHYEVVMPLL  110 (438)
T ss_dssp             CSCHHHHHHHHHHHH
T ss_pred             eCCcHHHHHHHHHHH
Confidence            999999888766544

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.00  E-value=0.0016  Score=60.93  Aligned_cols=91  Identities=13%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--c-CCEEEEccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~-ADvIiLavP  187 (313)
                      .++.|+|. |.||..+++++++.      |+++++...+...-.   .-.|+..    ..+++|+.+  . .|++++.+|
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp   80 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP   80 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred             CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence            45777798 99999999999998      988555555432100   0146553    457888876  5 999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      +....+++++..+. ....+|+.+.|+..
T Consensus        81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~  108 (297)
T 2yv2_A           81 APFAPDAVYEAVDA-GIRLVVVITEGIPV  108 (297)
T ss_dssp             GGGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred             HHHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence            99999999877654 23346667888853

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.98  E-value=0.00058  Score=64.61  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC---CcccHHHHHHC----CceecCCCcCCH---Hh
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~~~~~~~~---~e  174 (313)
                      .+++| +++.|+|.|-+|.+++..|.+.      |. +|.+.+|.   .++..+.+.+.    +.........+.   .+
T Consensus       144 ~~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~  216 (312)
T 3t4e_A          144 FDMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE  216 (312)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             CCcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh
Confidence            45789 9999999999999999999998      98 78888887   32333333321    211000012243   56


Q ss_pred             hhccCCEEEEcccchhHHHHHHHH---HhcCCCCcEEEEec
Q 021356          175 TISGSDLVLLLISDAAQADNYEKI---FSCMKPNSILGLSH  212 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~vi~ei---~~~mk~gaiLid~~  212 (313)
                      .++++|+||-+||......--..+   ...++++.+|.|+.
T Consensus       217 ~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  257 (312)
T 3t4e_A          217 ALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV  257 (312)
T ss_dssp             HHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECC
T ss_pred             hccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEec
Confidence            688999999999976421100001   13456677777653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.96  E-value=0.0019  Score=61.61  Aligned_cols=95  Identities=21%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHH--HCC--ce--ecCCCcCCHHhhhccCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FT--EENGTLGDIYETISGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G--~~--~~~~~~~~~~e~i~~AD  180 (313)
                      .. +||+|||.|.||.++|..+...      |+  ++.+.+.........+.  ..+  +.  ..-....+.++ +++||
T Consensus        20 ~~-~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daD   91 (330)
T 3ldh_A           20 SY-NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSK   91 (330)
T ss_dssp             CC-CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCS
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCC
Confidence            44 9999999999999999999888      76  65554433221111111  111  10  00001235554 99999


Q ss_pred             EEEEcccch---------------h-HHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDA---------------A-QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~---------------a-~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +||++....               . ..++.+++.++ .|+++++.++
T Consensus        92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt  138 (330)
T 3ldh_A           92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP  138 (330)
T ss_dssp             EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence            999985321               1 11234455555 6788776554

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.95  E-value=0.0024  Score=59.89  Aligned_cols=90  Identities=24%  Similarity=0.219  Sum_probs=54.2

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhhccCCEE
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~---------G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ||+|||.|.||.+++..+...      ++ ++.+.+....+....+.+.         .....  ...+. +.+++||+|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V   71 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV   71 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred             CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence            689999999999999998877      76 4655554432222112211         11110  11354 689999999


Q ss_pred             EEcccchh----------------HHHHHHHHHhcCCCCcEEEEec
Q 021356          183 LLLISDAA----------------QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLavP~~a----------------~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |++.+...                ..++++++.++ .|+++++.++
T Consensus        72 i~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  116 (308)
T 2d4a_B           72 LVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITT  116 (308)
T ss_dssp             EECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence            99965432                22344455555 4777666553

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.92  E-value=0.0028  Score=61.89  Aligned_cols=93  Identities=17%  Similarity=0.163  Sum_probs=68.0

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC----Cccc--------HHHHHHCCceecCCCcCCHH
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY  173 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~----~~~s--------~~~A~~~G~~~~~~~~~~~~  173 (313)
                      .++. .+|.|+|.|.+|.++|+.|...      |. +|++.+++    ..+.        ...+.+....   ....+++
T Consensus       189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~  258 (388)
T 1vl6_A          189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE  258 (388)
T ss_dssp             CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred             CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence            6788 9999999999999999999998      88 67777775    2221        3344443211   1245899


Q ss_pred             hhhccCCEEEEcccchhHHHHH-HHHHhcCCCCcEEEEecC
Q 021356          174 ETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       174 e~i~~ADvIiLavP~~a~~~vi-~ei~~~mk~gaiLid~~G  213 (313)
                      |+++++|++|=+.-|    .++ +++...|+++.+|.+.+=
T Consensus       259 eav~~ADVlIG~Sap----~l~t~emVk~Ma~~pIIfalSN  295 (388)
T 1vl6_A          259 TALEGADFFIGVSRG----NILKPEWIKKMSRKPVIFALAN  295 (388)
T ss_dssp             HHHTTCSEEEECSCS----SCSCHHHHTTSCSSCEEEECCS
T ss_pred             HHHccCCEEEEeCCC----CccCHHHHHhcCCCCEEEEcCC
Confidence            999999999888754    344 356666889998887663

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.91  E-value=0.0015  Score=63.03  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      .+|+|||.| +|.-.+.++++.    ..+++++...+ ..++..+.|.+.|+..    ..+.++++++.|++++++|...
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV   78 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred             CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence            689999999 798877777664    11466543334 4445667788889863    6789999999999999999876


Q ss_pred             H
Q 021356          191 Q  191 (313)
Q Consensus       191 ~  191 (313)
                      +
T Consensus        79 h   79 (372)
T 4gmf_A           79 A   79 (372)
T ss_dssp             T
T ss_pred             c
Confidence            6

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.91  E-value=0.0025  Score=59.09  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=92.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH---HHHH----HCCceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~----~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++|+|+| .|.||+.+++.+.+.     .+++++...+++....   +...    ..|+..    ..+++++++++|+||
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVVI   78 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYLI   78 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEEE
Confidence            7999999 999999999998764     2667655555432110   0000    013321    458899999999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH--HHHHH-hcccc-cCCC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYV-QGKEI-NGAG  258 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~ga-iLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~--r~lf~-~G~e~-~g~G  258 (313)
                      -.++|....+++...+.+   |. +|+=+.|+.-..++..... .+... +-..||+.--..  -.+-+ ..+.+ .++.
T Consensus        79 DfT~p~a~~~~~~~al~~---G~~vVigTTG~s~~~~~~L~~a-a~~~~-vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~d  153 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALRH---DVKLVIGTTGFSEPQKAQLRAA-GEKIA-LVFSANMSVGVNVTMKLLEFAAKQFAQGYD  153 (272)
T ss_dssp             ECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHHH-TTTSE-EEECSCCCHHHHHHHHHHHHHHHHTSSSCE
T ss_pred             EcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hccCC-EEEECCCCHHHHHHHHHHHHHHHhcCcCCC
Confidence            999998887777765543   33 4444667753222211112 23444 466777654330  00000 01111 1122


Q ss_pred             ceEEEEecc----C-CCHHHHHHHHHHHHHcCCC
Q 021356          259 INSSFAVHQ----D-VDGRATNVALGWSVALGSP  287 (313)
Q Consensus       259 ~~~iitp~~----d-~~~ea~e~a~~L~~alG~~  287 (313)
                      +- |+--|.    | .++.|+.+++.+.+.+|..
T Consensus       154 ie-i~E~HH~~K~DaPSGTA~~la~~i~~~~~~~  186 (272)
T 4f3y_A          154 IE-IIEAHHRHKVDAPSGTALMMGETIAAATGRS  186 (272)
T ss_dssp             EE-EEEEECTTCCSSSCHHHHHHHHHHHHTTTCC
T ss_pred             EE-EEEecCCCCCCCCCHHHHHHHHHHHHHhCcc
Confidence            22 233444    2 4799999999998888753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.88  E-value=0.0031  Score=59.40  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccH-HHHHH--CC------ceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF-AEARA--AG------FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~-~~A~~--~G------~~~~~~~~~~~~e~i~~AD  180 (313)
                      +||+|||.|.+|.+++..|...      ++  ++.+.+ .+++.. ..+.+  ..      +..    ..+..+.+++||
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~D-i~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aD   74 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVD-VVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDAD   74 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEEC-SSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEe-CCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCC
Confidence            7999999999999999999887      65  555444 433222 12222  11      111    124467899999


Q ss_pred             EEEEcccch
Q 021356          181 LVLLLISDA  189 (313)
Q Consensus       181 vIiLavP~~  189 (313)
                      +||++.+..
T Consensus        75 vVii~ag~~   83 (318)
T 1ez4_A           75 LVVITAGAP   83 (318)
T ss_dssp             EEEECCCC-
T ss_pred             EEEECCCCC
Confidence            999998643

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.84  E-value=0.0022  Score=60.61  Aligned_cols=65  Identities=20%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-c-ccHHHHHH---------CC-ceecCCCcCCHHhhhcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-S-RSFAEARA---------AG-FTEENGTLGDIYETISG  178 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-~-~s~~~A~~---------~G-~~~~~~~~~~~~e~i~~  178 (313)
                      ++|+|||.|.||.++|..+...      |+ ++.+.++.. + .....+.+         .. .+.    ..+..+.+++
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~----~t~d~~a~~~   78 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANII----GTSDYADTAD   78 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEE----EESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEE----EcCCHHHhCC
Confidence            7999999999999999999988      88 776655441 1 11111111         00 110    1233578999


Q ss_pred             CCEEEEcc
Q 021356          179 SDLVLLLI  186 (313)
Q Consensus       179 ADvIiLav  186 (313)
                      ||+||++.
T Consensus        79 aDvVIiaa   86 (315)
T 3tl2_A           79 SDVVVITA   86 (315)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            99999997

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0027  Score=62.98  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~ADvI  182 (313)
                      ..+++ ++|.|||.|.+|.+++..|.+.     .|.+|.+..|..++..+.+...++........   ++.++++++|+|
T Consensus        19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV   92 (467)
T 2axq_A           19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV   92 (467)
T ss_dssp             ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred             cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence            56788 9999999999999999999875     14677777776433333332223320000122   345677899999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      |.++|......+....   +++|..++|..-
T Consensus        93 In~tp~~~~~~v~~a~---l~~g~~vvd~~~  120 (467)
T 2axq_A           93 ISLIPYTFHPNVVKSA---IRTKTDVVTSSY  120 (467)
T ss_dssp             EECSCGGGHHHHHHHH---HHHTCEEEECSC
T ss_pred             EECCchhhhHHHHHHH---HhcCCEEEEeec
Confidence            9999987655544332   234566666543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.82  E-value=0.0035  Score=59.31  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=44.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccH-HHHHH--CCcee-cCC-CcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF-AEARA--AGFTE-ENG-TLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~-~~A~~--~G~~~-~~~-~~~~~~e~i~~ADvIiL  184 (313)
                      +||+|||.|.+|.+++..|...      ++  ++.+. |.+++.. ..+.+  ..... .+- ...+..+.+++||+||+
T Consensus        10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii   82 (326)
T 2zqz_A           10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIV-DIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVI   82 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEE-eCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEE
Confidence            7999999999999999998877      65  55444 4433222 22221  22100 000 01244678999999999


Q ss_pred             cccch
Q 021356          185 LISDA  189 (313)
Q Consensus       185 avP~~  189 (313)
                      +.+..
T Consensus        83 ~ag~~   87 (326)
T 2zqz_A           83 TAGAP   87 (326)
T ss_dssp             CCCCC
T ss_pred             cCCCC
Confidence            98643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.80  E-value=0.0018  Score=62.69  Aligned_cols=94  Identities=13%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCC---cEEEEEecCCcccHHHHHHCC------ce--ecCC-CcCCHHhhhcc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FT--EENG-TLGDIYETISG  178 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G---~~Vivg~r~~~~s~~~A~~~G------~~--~~~~-~~~~~~e~i~~  178 (313)
                      |++|+|||.|.+|..+++.|.+.      |   .+|++..|..++..+.+.+.+      +.  .-|- ...++++++++
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~   74 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE   74 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence            57999999999999999999887      6   277777765443333333221      21  1000 01235567777


Q ss_pred             --CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          179 --SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       179 --ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                        +|+||.++|+.....+++....   .|.-++|+++
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~l~---~g~~vvD~a~  108 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEACLR---TGVPYLDTAN  108 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHHHH---HTCCEEESSC
T ss_pred             hCCCEEEECCCcccChHHHHHHHH---hCCCEEEecC
Confidence              8999999998876666654332   2444555443

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.80  E-value=0.0079  Score=57.46  Aligned_cols=92  Identities=22%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHH--------------------CCceecCCCcC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARA--------------------AGFTEENGTLG  170 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~--------------------~G~~~~~~~~~  170 (313)
                      .+|||+|+|.||+.+++.|...     .+++++...+....... .++.                    .++..    ..
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~   73 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG   73 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred             eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence            5899999999999999998764     14665444433222211 1111                    12221    11


Q ss_pred             CHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       171 ~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +.++++.++|+|+.|+|.....+..+  ..+++.|+.|++.++.
T Consensus        74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE  115 (343)
T ss_dssp             BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred             chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence            34555679999999999876555554  4567889888887654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.68  E-value=0.0027  Score=62.94  Aligned_cols=74  Identities=20%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             CCCCEEEEEcccch--HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhccC
Q 021356          109 NGINQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~m--G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~~~~~~~e~i~~A  179 (313)
                      +. +||+|||.|+|  |.++++.|...  +.-.| +|++.+ .+++..+.....+       ...  ..+.+.++++++|
T Consensus         4 ~~-~KIaVIGaGs~g~g~~la~~l~~~--~~~~g-eV~L~D-i~~e~le~~~~~~~~l~~~~~~I--~~TtD~~eAl~dA   76 (450)
T 3fef_A            4 DQ-IKIAYIGGGSQGWARSLMSDLSID--ERMSG-TVALYD-LDFEAAQKNEVIGNHSGNGRWRY--EAVSTLKKALSAA   76 (450)
T ss_dssp             CC-EEEEEETTTCSSHHHHHHHHHHHC--SSCCE-EEEEEC-SSHHHHHHHHHHHTTSTTSCEEE--EEESSHHHHHTTC
T ss_pred             CC-CEEEEECCChhHhHHHHHHHHHhc--cccCC-eEEEEe-CCHHHHHHHHHHHHHHhccCCeE--EEECCHHHHhcCC
Confidence            44 79999999998  57888887752  00015 665554 4433222211111       011  1246888999999


Q ss_pred             CEEEEcccch
Q 021356          180 DLVLLLISDA  189 (313)
Q Consensus       180 DvIiLavP~~  189 (313)
                      |+||+++++.
T Consensus        77 DfVI~airvG   86 (450)
T 3fef_A           77 DIVIISILPG   86 (450)
T ss_dssp             SEEEECCCSS
T ss_pred             CEEEeccccC
Confidence            9999999753

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.65  E-value=0.0032  Score=59.09  Aligned_cols=66  Identities=21%  Similarity=0.189  Sum_probs=42.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccH-HHHHH--CC------ceecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF-AEARA--AG------FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~-~~A~~--~G------~~~~~~~~~~~~e~i~~AD  180 (313)
                      +||+|||.|.+|.+++..|...      +.  ++.+.+ .+++.. ..+.+  ..      ...   .. +..+.+++||
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~D-i~~~k~~g~a~dl~~~~~~~~~~~v---~~-~~~~a~~~aD   69 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVD-LDRKLAQAHAEDILHATPFAHPVWV---WA-GSYGDLEGAR   69 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEEC-SSHHHHHHHHHHHHTTGGGSCCCEE---EE-CCGGGGTTEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEe-CChhHHHHHHHHHHHhHhhcCCeEE---EE-CCHHHhCCCC
Confidence            6899999999999999998876      53  554444 433222 12222  11      111   01 2367899999


Q ss_pred             EEEEcccc
Q 021356          181 LVLLLISD  188 (313)
Q Consensus       181 vIiLavP~  188 (313)
                      +|+++.+.
T Consensus        70 ~Vii~ag~   77 (310)
T 2xxj_A           70 AVVLAAGV   77 (310)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998753

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.65  E-value=0.0058  Score=58.21  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=58.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCcee--------cCCCc--CCHHhhhc-c
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE--------ENGTL--GDIYETIS-G  178 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~--------~~~~~--~~~~e~i~-~  178 (313)
                      ++|+||| .|.+|..+++.|.+.     .+++++...+. ...........+...        .+-..  .+.++.++ +
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED   83 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred             ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence            5899999 899999999998765     13565444432 111111111122100        00001  14445556 8


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|+|++|+|.....++...+.+   .|+.|+|.+|.
T Consensus        84 ~DvV~~atp~~~~~~~a~~~~~---aG~~VId~s~~  116 (354)
T 1ys4_A           84 VDIVFSALPSDLAKKFEPEFAK---EGKLIFSNASA  116 (354)
T ss_dssp             CCEEEECCCHHHHHHHHHHHHH---TTCEEEECCST
T ss_pred             CCEEEECCCchHHHHHHHHHHH---CCCEEEECCch
Confidence            9999999999887777776543   57889998874

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.65  E-value=0.0048  Score=58.59  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhc---hhhhcCCcEEEEEecCCccc-----HH--HHHHC--CceecCCCcCCHHhhhc-
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRS-----FA--EARAA--GFTEENGTLGDIYETIS-  177 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~---~~~~~~G~~Vivg~r~~~~s-----~~--~A~~~--G~~~~~~~~~~~~e~i~-  177 (313)
                      |.+|||||+|.||..+++.+.+.   |...+.+++++...+++...     ..  .+...  +...   +..+.+++++ 
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~---~~~d~~~ll~~   78 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLR---DDAKAIEVVRS   78 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCS---BCCCHHHHHHH
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcccc---CCCCHHHHhcC
Confidence            57999999999999999998764   22233466655444443211     11  11111  1110   0127888885 


Q ss_pred             -cCCEEEEcccchhH-HHHHHHHHhcCCCCcEEEEe
Q 021356          178 -GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       178 -~ADvIiLavP~~a~-~~vi~ei~~~mk~gaiLid~  211 (313)
                       +.|+|+.++|+..+ .+..+-+...|+.|+-|+..
T Consensus        79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~  114 (327)
T 3do5_A           79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS  114 (327)
T ss_dssp             SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred             CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence             58999999998865 12223334456677766544

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.64  E-value=0.0038  Score=59.48  Aligned_cols=93  Identities=11%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--cCCCcCCHHhhhccCCEEEEcccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      ++|+|+| .|.+|..+.+.|.+.     ..++++...+......+.....+...  .+-...+.++ +.++|+|++|+|.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~   78 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH   78 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence            6899999 799999999999765     14465544443221111111111100  0011223334 5789999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ....++.....   +.|+.|+|.++
T Consensus        79 ~~s~~~a~~~~---~aG~~VId~Sa  100 (345)
T 2ozp_A           79 GVFAREFDRYS---ALAPVLVDLSA  100 (345)
T ss_dssp             THHHHTHHHHH---TTCSEEEECSS
T ss_pred             HHHHHHHHHHH---HCCCEEEEcCc
Confidence            88777776554   56888998887

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.64  E-value=0.0033  Score=60.26  Aligned_cols=93  Identities=11%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee----cCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~----~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|+| .|.+|+.+.+.|.+.     ..++++...+..+...+.....+...    .+-...+ ++.+.++|+|++|+
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~at   90 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANH-----PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCL   90 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTC-----SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECC
T ss_pred             cEEEEECcCCHHHHHHHHHHHcC-----CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcC
Confidence            6899999 899999999999876     13465554443322222222222110    0001112 44567899999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |.....+....   + +.|+.++|.++-
T Consensus        91 p~~~s~~~a~~---~-~aG~~VId~sa~  114 (359)
T 1xyg_A           91 PHGTTQEIIKE---L-PTALKIVDLSAD  114 (359)
T ss_dssp             CTTTHHHHHHT---S-CTTCEEEECSST
T ss_pred             CchhHHHHHHH---H-hCCCEEEECCcc
Confidence            98877665543   3 678899998873

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.63  E-value=0.011  Score=55.36  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCC--cEEEEEecCCcccHHHHHH--CCceec--CCC--cCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTEE--NGT--LGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~~--~G~~~~--~~~--~~~~~e~i~~ADvI  182 (313)
                      |||+|||. |.+|.+++..|...      |  .++.+.+...  ....+.+  ......  ..+  ..+.++++++||+|
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV   72 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV   72 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence            58999998 99999999998877      6  4555554433  2222222  111100  000  12577789999999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      +++..
T Consensus        73 vi~ag   77 (314)
T 1mld_A           73 VIPAG   77 (314)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            99873

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.62  E-value=0.0038  Score=61.45  Aligned_cols=79  Identities=20%  Similarity=0.145  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcC---CHHhhhccCCEEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~---~~~e~i~~ADvIiL  184 (313)
                      .+ ++|.|+|.|.+|.++++.|.+.      |.+|++..|..++..+.+.+.+ +........   ++.++++++|+|+.
T Consensus         2 ~~-k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn   74 (450)
T 1ff9_A            2 AT-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS   74 (450)
T ss_dssp             CC-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence            45 8999999999999999999988      8888777765332222222222 110000122   34467889999999


Q ss_pred             cccchhHHHH
Q 021356          185 LISDAAQADN  194 (313)
Q Consensus       185 avP~~a~~~v  194 (313)
                      ++|......+
T Consensus        75 ~a~~~~~~~i   84 (450)
T 1ff9_A           75 LIPYTFHATV   84 (450)
T ss_dssp             CCC--CHHHH
T ss_pred             CCccccchHH
Confidence            9998655443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.61  E-value=0.00083  Score=60.43  Aligned_cols=81  Identities=10%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             CEEEEEcccchHHHHHHHHH--hchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLR--DSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr--~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLav  186 (313)
                      .+++|||+|++|.++++.+.  ..      |++++...|.++. ....+.-.|+...  ...+++++++  +.|+++|++
T Consensus        85 ~~V~IvGaG~lG~aLa~~~~~~~~------g~~iVg~~D~dp~~kiG~~~i~GvpV~--~~~dL~~~v~~~~Id~vIIAv  156 (212)
T 3keo_A           85 TNVMLVGCGNIGRALLHYRFHDRN------KMQISMAFDLDSNDLVGKTTEDGIPVY--GISTINDHLIDSDIETAILTV  156 (212)
T ss_dssp             EEEEEECCSHHHHHHTTCCCCTTS------SEEEEEEEECTTSTTTTCBCTTCCBEE--EGGGHHHHC-CCSCCEEEECS
T ss_pred             CEEEEECcCHHHHHHHHhhhcccC------CeEEEEEEeCCchhccCceeECCeEEe--CHHHHHHHHHHcCCCEEEEec
Confidence            78999999999999998742  33      7887766676654 3221011354431  1357788887  499999999


Q ss_pred             cchhHHHHHHHHHh
Q 021356          187 SDAAQADNYEKIFS  200 (313)
Q Consensus       187 P~~a~~~vi~ei~~  200 (313)
                      |.....++.+.+.+
T Consensus       157 Ps~~aq~v~d~lv~  170 (212)
T 3keo_A          157 PSTEAQEVADILVK  170 (212)
T ss_dssp             CGGGHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHH
Confidence            99887777776554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.57  E-value=0.002  Score=59.51  Aligned_cols=89  Identities=15%  Similarity=0.155  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      .+ +++.|||.|-+|.+++..|.+.      |. +|.+.+|..++..+.+.+.+...    ..+. + +.++|+||.++|
T Consensus       118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~-~-~~~~DivInaTp  184 (271)
T 1npy_A          118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL-E-NQQADILVNVTS  184 (271)
T ss_dssp             TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC-T-TCCCSEEEECSS
T ss_pred             CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhh-h-cccCCEEEECCC
Confidence            57 8999999999999999999998      87 68888887555555565555421    0122 2 578999999999


Q ss_pred             chhHHH----H--HHHHHhcCCCCcEEEEec
Q 021356          188 DAAQAD----N--YEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       188 ~~a~~~----v--i~ei~~~mk~gaiLid~~  212 (313)
                      ......    .  +.  ...++++.+++|+.
T Consensus       185 ~gm~~~~~~~~~~~~--~~~l~~~~~v~Dlv  213 (271)
T 1npy_A          185 IGMKGGKEEMDLAFP--KAFIDNASVAFDVV  213 (271)
T ss_dssp             TTCTTSTTTTSCSSC--HHHHHHCSEEEECC
T ss_pred             CCccCccccCCCCCC--HHHcCCCCEEEEee
Confidence            765321    1  11  11234567777764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.54  E-value=0.0041  Score=56.33  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA----  160 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~----  160 (313)
                      ...|++ ++|.|||+|-+|..+++.|...      |+ ++.+.++..                   .+....+.+.    
T Consensus        26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n   98 (249)
T 1jw9_B           26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN   98 (249)
T ss_dssp             HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence            466888 9999999999999999999998      87 555555432                   2222222111    


Q ss_pred             -Cce--ecCCCcC--CHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          161 -GFT--EENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       161 -G~~--~~~~~~~--~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                       ++.  .......  +.++.++++|+||.+++.......+.+..
T Consensus        99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~  142 (249)
T 1jw9_B           99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC  142 (249)
T ss_dssp             TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence             211  0000111  23567889999999998766555666543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.53  E-value=0.0066  Score=60.18  Aligned_cols=87  Identities=20%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-HHC-C---------------------ceecCCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAA-G---------------------FTEENGT  168 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~-G---------------------~~~~~~~  168 (313)
                      .+|||||+|.||..++..+.+.     .++++....+.+.+..+.+ .+. |                     ...   .
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~---v   95 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIA---V   95 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEE---E
T ss_pred             eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCce---E
Confidence            6899999999999999888754     2667655555554433332 232 4                     010   1


Q ss_pred             cCCHHhhhc--cCCEEEEcccchh-HHHHHHHHHhcCCCCcEEE
Q 021356          169 LGDIYETIS--GSDLVLLLISDAA-QADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       169 ~~~~~e~i~--~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLi  209 (313)
                      +.+.+++++  +.|+|++++|+.. +.++..+.   |+.|+-|+
T Consensus        96 ~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~A---L~AGKHVv  136 (446)
T 3upl_A           96 TDDNDLILSNPLIDVIIDATGIPEVGAETGIAA---IRNGKHLV  136 (446)
T ss_dssp             ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHH---HHTTCEEE
T ss_pred             ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHH---HHcCCcEE
Confidence            468889987  5899999998753 44444433   34466554

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.53  E-value=0.0078  Score=57.44  Aligned_cols=94  Identities=16%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC---c--ccHHHHH--HCCceecCCCcC---CHHhhhccC
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S--RSFAEAR--AAGFTEENGTLG---DIYETISGS  179 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~---~--~s~~~A~--~~G~~~~~~~~~---~~~e~i~~A  179 (313)
                      |++|+||| .|.+|+.+.+.|.+.     .++++.....+.   +  +.....-  -.|..+  -.+.   +.+++++++
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~--~~v~~~~~~~~~~~~~   76 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIVE--LPLQPMSDISEFSPGV   76 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCC--CBEEEESSGGGTCTTC
T ss_pred             ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCccc--eeEeccCCHHHHhcCC
Confidence            47999999 699999999998874     155654433222   1  1111110  012110  0111   344544899


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+||+|+|.....++.+++.   +.|+.++|.++-
T Consensus        77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa~  108 (337)
T 3dr3_A           77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSGA  108 (337)
T ss_dssp             SEEEECSCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred             CEEEECCChHHHHHHHHHHH---HCCCEEEEcCCc
Confidence            99999999888777777664   468899998774

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.51  E-value=0.00099  Score=59.63  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiLavP~~a  190 (313)
                      ++++|||+|.+|.++++.+...    . |++++...|.++..... ...|+...  ...+++++++ +.|+|++|+|...
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~  152 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA  152 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred             CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence            7899999999999999863222    2 67776666655432211 11233211  1457888886 5999999999988


Q ss_pred             HHHHHHHHHh
Q 021356          191 QADNYEKIFS  200 (313)
Q Consensus       191 ~~~vi~ei~~  200 (313)
                      ..++.+.+..
T Consensus       153 ~~ei~~~l~~  162 (211)
T 2dt5_A          153 AQKAADLLVA  162 (211)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776544

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.50  E-value=0.0062  Score=57.96  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH--CC--cee--cCCCcCCHHhhhccC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTE--ENGTLGDIYETISGS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~--~~~~~~~~~e~i~~A  179 (313)
                      ... +||+|||.|.||.++|..|...      |+  ++.+.+....+....+.+  ..  +..  .-....+. +.+++|
T Consensus        17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a   88 (331)
T 4aj2_A           17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS   88 (331)
T ss_dssp             CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence            445 9999999999999999999877      76  665554432222222221  11  110  00002344 469999


Q ss_pred             CEEEEcc
Q 021356          180 DLVLLLI  186 (313)
Q Consensus       180 DvIiLav  186 (313)
                      |+||++.
T Consensus        89 DiVvi~a   95 (331)
T 4aj2_A           89 KLVIITA   95 (331)
T ss_dssp             EEEEECC
T ss_pred             CEEEEcc
Confidence            9999976

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=96.50  E-value=0.0059  Score=57.73  Aligned_cols=76  Identities=14%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ .+|..+|..|...      +..|.+.-.+                   ..++.+.+++||+||.
T Consensus       175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~  228 (303)
T 4b4u_A          175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG  228 (303)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred             CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence            58999 999999966 6799999999988      8877654322                   2377889999999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-..   ++.  .+++|+|++|+|++
T Consensus       229 A~G~p~---~i~--~d~vk~GavVIDVG  251 (303)
T 4b4u_A          229 AVGKAE---LIQ--KDWIKQGAVVVDAG  251 (303)
T ss_dssp             CSCSTT---CBC--GGGSCTTCEEEECC
T ss_pred             ccCCCC---ccc--cccccCCCEEEEec
Confidence            986433   232  35689999999986

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.48  E-value=0.0088  Score=53.98  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .-+|+| +++.|||.|.+|..-++.|.+.      |.+|++....-.+..+...+.| +.-..... . ++-+.++|+||
T Consensus        26 fl~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~-~-~~dL~~adLVI   96 (223)
T 3dfz_A           26 MLDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKKV-G-EEDLLNVFFIV   96 (223)
T ss_dssp             EECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSCC-C-GGGSSSCSEEE
T ss_pred             EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECCC-C-HhHhCCCCEEE
Confidence            468999 9999999999999999999999      9887776654333333322333 32111111 2 34578999999


Q ss_pred             EcccchhHHHHHHHHH
Q 021356          184 LLISDAAQADNYEKIF  199 (313)
Q Consensus       184 LavP~~a~~~vi~ei~  199 (313)
                      .++.+......+.+..
T Consensus        97 aAT~d~~~N~~I~~~a  112 (223)
T 3dfz_A           97 VATNDQAVNKFVKQHI  112 (223)
T ss_dssp             ECCCCTHHHHHHHHHS
T ss_pred             ECCCCHHHHHHHHHHH
Confidence            9988877666555443

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.44  E-value=0.0093  Score=55.48  Aligned_cols=92  Identities=11%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-hccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-i~~ADvIiLavP  187 (313)
                      ++|.|+|+|..|..+++.|.+.      |+ ++ ..+++++..+ ..+.|+..-.+...+.+   ++ +++||.|+++++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~-vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~  186 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGS------EV-FV-LAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE  186 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGS------CE-EE-EESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC------Cc-EE-EEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence            6899999999999999999988      87 54 4455555555 55666532122223332   33 788999999999


Q ss_pred             chhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          188 DAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      ++...-.+-..+..+.|+ .++.-+.
T Consensus       187 ~d~~n~~~~~~ar~~~~~~~iiar~~  212 (336)
T 1lnq_A          187 SDSETIHCILGIRKIDESVRIIAEAE  212 (336)
T ss_dssp             SHHHHHHHHHHHHTTCTTSEEEEECS
T ss_pred             ccHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            875544444556666666 4555444

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.43  E-value=0.0041  Score=59.07  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=45.1

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH--CCcee-cC-CCcCCHHhhhccCC
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-EN-GTLGDIYETISGSD  180 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~-~~-~~~~~~~e~i~~AD  180 (313)
                      ...+ +||+|||.|.+|.++|..|...      |+  ++.+.+....+....+.+  ..... .+ ....+..+.+++||
T Consensus         6 ~~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aD   78 (326)
T 3vku_A            6 DKDH-QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDAD   78 (326)
T ss_dssp             -CCC-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCS
T ss_pred             cCCC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCC
Confidence            4456 8999999999999999999888      76  555544332212211111  11100 00 00123467899999


Q ss_pred             EEEEccc
Q 021356          181 LVLLLIS  187 (313)
Q Consensus       181 vIiLavP  187 (313)
                      +||++..
T Consensus        79 iVvi~ag   85 (326)
T 3vku_A           79 LVVITAG   85 (326)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999864

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.40  E-value=0.0051  Score=57.64  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=92.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      .+|+|+| .|.||+.+++.+.+.     .+++++.+.+++....   +...     ..|+..    ..++++++.++|+|
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDVv   92 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEGI   92 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCEE
Confidence            6899999 999999999998764     2677665555432110   0001     123332    45899999999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCc-EEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhH--HHHHH-hcccc-
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYV-QGKEI-  254 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~ga-iLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~--r~lf~-~G~e~-  254 (313)
                      |-.++|....+.+...+.+   |. +|+=+.|+.-.   .+++   . .+.+. +-..||+.--..  -.+-+ ..+-+ 
T Consensus        93 IDFT~p~a~~~~~~~~l~~---Gv~vViGTTG~~~e~~~~L~~---a-a~~~~-~~~a~N~SiGv~ll~~l~~~aa~~l~  164 (288)
T 3ijp_A           93 LDFSQPQASVLYANYAAQK---SLIHIIGTTGFSKTEEAQIAD---F-AKYTT-IVKSGNMSLGVNLLANLVKRAAKALD  164 (288)
T ss_dssp             EECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHH---H-HTTSE-EEECSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             EEcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH---H-hCcCC-EEEECCCcHHHHHHHHHHHHHHHhcC
Confidence            9999998877766655443   33 44446677432   2222   1 23344 467787754331  00000 01111 


Q ss_pred             cCCCceEEEEecc-----CCCHHHHHHHHHHHHHcCC
Q 021356          255 NGAGINSSFAVHQ-----DVDGRATNVALGWSVALGS  286 (313)
Q Consensus       255 ~g~G~~~iitp~~-----d~~~ea~e~a~~L~~alG~  286 (313)
                      .++.+- |+--|.     -.++.|+.+++.+.+.+|.
T Consensus       165 ~~~die-IiE~HH~~K~DaPSGTA~~la~~i~~~~~~  200 (288)
T 3ijp_A          165 DDFDIE-IYEMHHANKVDSPSGTALLLGQAAAEGRNI  200 (288)
T ss_dssp             TTSEEE-EEEEECTTCCCSSCHHHHHHHHHHHHHTTS
T ss_pred             CCCCEE-EEEccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            122222 233333     2668999999999999884

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.25  E-value=0.011  Score=58.48  Aligned_cols=94  Identities=13%  Similarity=0.147  Sum_probs=66.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc---EEEEEe----cC----Cccc---HH-----HHHHCCceecC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEEN  166 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~----r~----~~~s---~~-----~A~~~G~~~~~  166 (313)
                      ..+++ +++.|+|.|..|.+++..|.+.      |.   ++++.+    |+    ....   ..     .+......   
T Consensus       182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~---  251 (439)
T 2dvm_A          182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE---  251 (439)
T ss_dssp             CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred             CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence            46788 9999999999999999999998      87   687887    65    2111   10     11111110   


Q ss_pred             CCcCCHHhhhccCCEEEEcccc--hhHHHHHHHHHhcCCCCcEEEEec
Q 021356          167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       167 ~~~~~~~e~i~~ADvIiLavP~--~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ....++.|+++++|+||-++|.  ....+   +....|+++.+|.|..
T Consensus       252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLy  296 (439)
T 2dvm_A          252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLA  296 (439)
T ss_dssp             CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECC
T ss_pred             cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECC
Confidence            0134688999999999999997  54433   3445688899999884

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.23  E-value=0.017  Score=50.26  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             ccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhccCC
Q 021356          105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSD  180 (313)
Q Consensus       105 ~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~i~~AD  180 (313)
                      ...|+| |+|.|.|. |-+|.++++.|.+.      |++|++..|+.++ .+.....++   ...|-+ .++.+++.+.|
T Consensus        16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D   86 (236)
T 3e8x_A           16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLE-EDFSHAFASID   86 (236)
T ss_dssp             -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTT-SCCGGGGTTCS
T ss_pred             ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccH-HHHHHHHcCCC
Confidence            578999 99999996 99999999999998      9998777776443 333333444   211111 45667889999


Q ss_pred             EEEEcccc
Q 021356          181 LVLLLISD  188 (313)
Q Consensus       181 vIiLavP~  188 (313)
                      +||.+...
T Consensus        87 ~vi~~ag~   94 (236)
T 3e8x_A           87 AVVFAAGS   94 (236)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99988764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.23  E-value=0.0076  Score=59.48  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-HHHCCceecCCCcCCHH---h-hhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIY---E-TISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~---e-~i~~ADvIiLav  186 (313)
                      |+|-|+|+|.+|..+|+.|.+.      |++|++.+ ++++..+. ..+.++..-.+...+.+   + =+++||+++.++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId-~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t   76 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGE------NNDITIVD-KDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT   76 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCST------TEEEEEEE-SCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence            8999999999999999999988      99876555 44444443 34556421112222332   2 268899998888


Q ss_pred             cchhH
Q 021356          187 SDAAQ  191 (313)
Q Consensus       187 P~~a~  191 (313)
                      +++..
T Consensus        77 ~~De~   81 (461)
T 4g65_A           77 NTDET   81 (461)
T ss_dssp             SCHHH
T ss_pred             CChHH
Confidence            87654

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.21  E-value=0.01  Score=56.57  Aligned_cols=94  Identities=10%  Similarity=0.050  Sum_probs=56.4

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccHHHHHHCCce--------ecCCCc--CCHHhhhccC
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFT--------EENGTL--GDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~--------~~~~~~--~~~~e~i~~A  179 (313)
                      ++|||+| .|.+|..+.+.|.+.     ..++++...+ +...........++.        ..+-.+  .+.++ +.++
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v   78 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV   78 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred             cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence            6899999 899999999998765     1456544432 111111122112210        000001  13333 4789


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+|++|+|.....++.....+   .|+.|+|.++.
T Consensus        79 DvVf~atp~~~s~~~a~~~~~---aG~~VId~s~~  110 (350)
T 2ep5_A           79 DVVLSALPNELAESIELELVK---NGKIVVSNASP  110 (350)
T ss_dssp             SEEEECCCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             CEEEECCChHHHHHHHHHHHH---CCCEEEECCcc
Confidence            999999998877777766543   57778887763

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.13  E-value=0.012  Score=57.38  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=52.6

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc---ccHHHHHHCCceecCCCcCCHHhhhcc-CCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~---~s~~~A~~~G~~~~~~~~~~~~e~i~~-ADv  181 (313)
                      .+++| ++|.|||.|..|.+.|+.|++.      |++|.+.+++..   ...+..++.|+....+  ...++.+.+ +|+
T Consensus         5 ~~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d~   75 (451)
T 3lk7_A            5 TTFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFCY   75 (451)
T ss_dssp             CTTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEEE
T ss_pred             hhcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCCE
Confidence            56789 9999999999999999999999      999877766431   2234455678753211  133456666 999


Q ss_pred             EEEc--ccc
Q 021356          182 VLLL--ISD  188 (313)
Q Consensus       182 IiLa--vP~  188 (313)
                      ||+.  +|+
T Consensus        76 vv~spgi~~   84 (451)
T 3lk7_A           76 MIKNPGIPY   84 (451)
T ss_dssp             EEECTTSCT
T ss_pred             EEECCcCCC
Confidence            9985  554

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.12  E-value=0.024  Score=56.64  Aligned_cols=74  Identities=18%  Similarity=0.122  Sum_probs=42.3

Q ss_pred             CEEEEEcccchH--HHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH--------HCCceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG--~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||.|.||  .++|..|...  .+-.+.+|++.++. ++..+...        ..+....-....+.++++++||+
T Consensus         4 ~KIaVIGAGsVg~g~ala~~La~~--~~l~~~eV~L~Di~-~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            4 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTVTLMDID-EERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEEEEECSC-HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CEEEEECCCchHHHHHHHHHHHhc--CcCCCCEEEEEeCC-HHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCE
Confidence            799999999985  5556676532  00115566655544 32221111        11111000113477789999999


Q ss_pred             EEEcccc
Q 021356          182 VLLLISD  188 (313)
Q Consensus       182 IiLavP~  188 (313)
                      ||+++|.
T Consensus        81 VIiaagv   87 (480)
T 1obb_A           81 VINTAMV   87 (480)
T ss_dssp             EEECCCT
T ss_pred             EEECCCc
Confidence            9999974

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.08  E-value=0.0079  Score=55.47  Aligned_cols=77  Identities=16%  Similarity=0.014  Sum_probs=51.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |+|++||+|+||..+++. +        +++++..++  ++..    +.|...    +.+++++++++|+|+-|.+..+.
T Consensus        13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av   73 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV   73 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred             ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence            999999999999999987 2        455433333  2211    114432    45788888899999999987766


Q ss_pred             HHHHHHHHhcCCCCcEEEE
Q 021356          192 ADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid  210 (313)
                      .+.+..+   |+.|.-|+.
T Consensus        74 ~e~~~~i---L~aG~dvv~   89 (253)
T 1j5p_A           74 KEYSLQI---LKNPVNYII   89 (253)
T ss_dssp             HHHHHHH---TTSSSEEEE
T ss_pred             HHHHHHH---HHCCCCEEE
Confidence            5555444   556665553

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.05  E-value=0.043  Score=48.69  Aligned_cols=69  Identities=13%  Similarity=0.084  Sum_probs=48.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      |+|.|+|.|.+|..+++.|.+.      |++|+...|+.. ........++........+++  +.++|+||-+..+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPD-QMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGG-GHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             CcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChh-hhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            8999999999999999999999      999877766543 333333455432112233433  78999999988653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.00  E-value=0.024  Score=56.07  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=55.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhc---hh-hhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~---~~-~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLa  185 (313)
                      .+|||||+|.+|..+++.|++.   +. ..+.+++++...+++....+.. ..+..    ...+.+++++  +.|+|+.+
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~----~~~d~~ell~d~diDvVve~   85 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLP----LTTNPFDVVDDPEIDIVVEL   85 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCC----EESCTHHHHTCTTCCEEEEC
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCc----ccCCHHHHhcCCCCCEEEEc
Confidence            4799999999999999888652   11 1234666654445443222111 12222    1457888886  57999999


Q ss_pred             ccc-hhHHHHHHHHHhcCCCCcEEE
Q 021356          186 ISD-AAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       186 vP~-~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +|. ..+.+++.+.+   +.|+-|+
T Consensus        86 tp~~~~h~~~~~~AL---~aGKhVv  107 (444)
T 3mtj_A           86 IGGLEPARELVMQAI---ANGKHVV  107 (444)
T ss_dssp             CCSSTTHHHHHHHHH---HTTCEEE
T ss_pred             CCCchHHHHHHHHHH---HcCCEEE
Confidence            996 66666665433   3455444

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.98  E-value=0.0074  Score=57.84  Aligned_cols=89  Identities=17%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCC------cEEEEEecCCc--ccHHHH----HH-CCceecCCCcCCHHhhhc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD------IVVKVGLRKGS--RSFAEA----RA-AGFTEENGTLGDIYETIS  177 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G------~~Vivg~r~~~--~s~~~A----~~-~G~~~~~~~~~~~~e~i~  177 (313)
                      ++|+|+| .|.+|..+.+.|.+.      +      ++++...++.+  +.....    .. ......   ..+. +.+.
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~~   79 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVLG   79 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHhc
Confidence            7999999 999999999999876      5      35444433221  111100    00 011110   1132 4466


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++|+|++|+|.....++.+.+    +.|..++|.++.
T Consensus        80 ~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~  112 (352)
T 2nqt_A           80 GHDAVFLALPHGHSAVLAQQL----SPETLIIDCGAD  112 (352)
T ss_dssp             TCSEEEECCTTSCCHHHHHHS----CTTSEEEECSST
T ss_pred             CCCEEEECCCCcchHHHHHHH----hCCCEEEEECCC
Confidence            999999999988766666654    468889988764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.92  E-value=0.02  Score=53.79  Aligned_cols=68  Identities=12%  Similarity=0.116  Sum_probs=43.2

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCC--cEEEEEecCCcccHHHHH--HCC-c--eecCC-CcCCHHhhhccCCEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR--AAG-F--TEENG-TLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~--~~G-~--~~~~~-~~~~~~e~i~~ADvI  182 (313)
                      +||+||| .|.+|.+++..|...      |  .+|.+. |.++. ...+.  ... .  ....- ...+..+++++||+|
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~-Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV   80 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLY-DVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI   80 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEE-ESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEE-eCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence            7999999 899999999999877      7  465554 43332 22221  111 1  10000 012456889999999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      |++.+
T Consensus        81 i~~ag   85 (326)
T 1smk_A           81 IVPAG   85 (326)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            99974

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.91  E-value=0.049  Score=52.03  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      .|+| .+|++||=|  +++.|++..+...      |+++.+...++    +...+    .+.+.|...+  ...+++|++
T Consensus       152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav  222 (333)
T 1duv_G          152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKGV  222 (333)
T ss_dssp             CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHHH
T ss_pred             CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEECHHHHh
Confidence            5788 999999986  9999999999999      99987775432    11222    2336673210  146899999


Q ss_pred             ccCCEEEEccc
Q 021356          177 SGSDLVLLLIS  187 (313)
Q Consensus       177 ~~ADvIiLavP  187 (313)
                      +++|+|..-+=
T Consensus       223 ~~aDvvytd~w  233 (333)
T 1duv_G          223 EGADFIYTDVW  233 (333)
T ss_dssp             TTCSEEEECCS
T ss_pred             CCCCEEEeCCc
Confidence            99999998554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.91  E-value=0.035  Score=51.81  Aligned_cols=71  Identities=17%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             CCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEc--
Q 021356          111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL--  185 (313)
Q Consensus       111 ikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLa--  185 (313)
                      +|+|.|||.|-+|.+ +|+.|++.      |++|.+.+++.. ...+..++.|+....+  .+.+++. .++|+||+.  
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~Spg   75 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIGNV   75 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEECTT
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEECCC
Confidence            389999999999996 99999999      999877766543 2334555678754211  2444554 589999984  


Q ss_pred             ccch
Q 021356          186 ISDA  189 (313)
Q Consensus       186 vP~~  189 (313)
                      +|++
T Consensus        76 i~~~   79 (326)
T 3eag_A           76 AKRG   79 (326)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            5543

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.86  E-value=0.052  Score=51.90  Aligned_cols=72  Identities=17%  Similarity=0.107  Sum_probs=52.2

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      .|+| .+|++||=|  +++.|++..+...      |+++.+...++    +...+    .+.+.|...+  ...+++|++
T Consensus       152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav  222 (335)
T 1dxh_A          152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV  222 (335)
T ss_dssp             CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred             CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHh
Confidence            6888 999999986  9999999999999      99987775432    11222    2335663210  146899999


Q ss_pred             ccCCEEEEccc
Q 021356          177 SGSDLVLLLIS  187 (313)
Q Consensus       177 ~~ADvIiLavP  187 (313)
                      +++|+|..-+=
T Consensus       223 ~~aDvvytd~w  233 (335)
T 1dxh_A          223 KGVDFVHTDVW  233 (335)
T ss_dssp             TTCSEEEECCC
T ss_pred             CCCCEEEeCCc
Confidence            99999998554

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.82  E-value=0.012  Score=54.30  Aligned_cols=160  Identities=14%  Similarity=0.135  Sum_probs=87.3

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH---HHHHHC-----CceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAA-----GFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~~~-----G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ++|+|+|+ |.||+.+++.+.+.     .+++++...+++....   +.....     ++..    ..+++++++++|+|
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV   76 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF   76 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence            68999998 99999999987643     1677654444432110   000011     2221    24677888899999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh--HHHHHHhcccc--cCC
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEI--NGA  257 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~ga-iLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~--~g~  257 (313)
                      |-.++|....+++.....+   |. +|+-..|+.....+..... .+... +-..||+.--.  +-.+.++--..  .++
T Consensus        77 IDft~p~~~~~~~~~a~~~---G~~vVigTtG~~~e~~~~L~~~-a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~~  151 (273)
T 1dih_A           77 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQAIRDA-AADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDYT  151 (273)
T ss_dssp             EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHH-TTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             EEcCChHHHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHh-cCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence            9888888777777655443   33 4444557754322211111 23344 44567654322  01111110000  112


Q ss_pred             CceEEEEecc-----CCCHHHHHHHHHHHHHcCC
Q 021356          258 GINSSFAVHQ-----DVDGRATNVALGWSVALGS  286 (313)
Q Consensus       258 G~~~iitp~~-----d~~~ea~e~a~~L~~alG~  286 (313)
                      .+-. +-.|.     ..++.++.+++.+.+..|.
T Consensus       152 diei-iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~  184 (273)
T 1dih_A          152 DIEI-IEAHHRHKVDAPSGTALAMGEAIAHALDK  184 (273)
T ss_dssp             EEEE-EEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred             CEEE-EEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence            2222 33332     3678999999999988885

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=95.80  E-value=0.07  Score=50.55  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhhh
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      ..|+| .+|++||= +++..|++..+...      |+++.+...++-    ...+    .+.+.|...+  ...+++|++
T Consensus       151 g~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav  221 (315)
T 1pvv_A          151 GTIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE--LLHDPVKAV  221 (315)
T ss_dssp             SCCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred             CCcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHh
Confidence            46889 99999996 79999999999998      999877765421    1212    2335663210  146899999


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      +++|+|..-+
T Consensus       222 ~~aDvvy~~~  231 (315)
T 1pvv_A          222 KDADVIYTDV  231 (315)
T ss_dssp             TTCSEEEECC
T ss_pred             CCCCEEEEcc
Confidence            9999999955

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=95.80  E-value=0.016  Score=54.99  Aligned_cols=97  Identities=14%  Similarity=0.078  Sum_probs=54.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhc-hhhhcCCcEEEEEecCCcc---------c-HHHHHHCCceecCCCcCCHHhhhc--c
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSR---------S-FAEARAAGFTEENGTLGDIYETIS--G  178 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~~---------s-~~~A~~~G~~~~~~~~~~~~e~i~--~  178 (313)
                      .+|+|||+|.||..+++.|.+. ....+.+++++...+++..         . .+.+.+.|... +... +.++++.  +
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~~   82 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGEA   82 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTSC
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCCC
Confidence            4799999999999999999762 0111224555433333321         1 12223334221 0012 5567664  5


Q ss_pred             CCEEEEcccchhHHH-HHHHHHhcCCCCcEEEE
Q 021356          179 SDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL  210 (313)
Q Consensus       179 ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid  210 (313)
                      .|+|+.++|+....+ .++.+...|+.|+-|+.
T Consensus        83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVt  115 (325)
T 3ing_A           83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVT  115 (325)
T ss_dssp             CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEECCCCccccchHHHHHHHHHHCCCeEEE
Confidence            899999999864422 23333444556776654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.79  E-value=0.037  Score=50.39  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=80.9

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEcccch
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiLavP~~  189 (313)
                      ++|+|+|+ |.||+.+++.+.+.     .+++++...+++             +      ++++++. ++|+||=.++|.
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------~------dl~~~~~~~~DvvIDfT~p~   56 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------D------PLSLLTDGNTEVVIDFTHPD   56 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------C------CTHHHHHTTCCEEEECSCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------C------CHHHHhccCCcEEEEccChH
Confidence            58999996 99999999998753     177766555542             1      3445553 799999888888


Q ss_pred             hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCC--CCccEEEeccCCCchh--HHHHHHhcccccCCCceEEEE
Q 021356          190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFP--KNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       190 a~~~vi~ei~~~mk~ga-iLid~~Gv~l~~~~~~~~~l~--~~i~vV~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iit  264 (313)
                      ...+++.....+   |. +|+-+.|+.....+.......  +++.+ -..||+.--.  +-.+.++-.... .. --|+-
T Consensus        57 a~~~~~~~a~~~---g~~~VigTTG~~~e~~~~l~~aa~~~~~~~v-v~a~N~siGv~ll~~l~~~aa~~~-~d-ieIiE  130 (245)
T 1p9l_A           57 VVMGNLEFLIDN---GIHAVVGTTGFTAERFQQVESWLVAKPNTSV-LIAPNFAIGAVLSMHFAKQAARFF-DS-AEVIE  130 (245)
T ss_dssp             THHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHHHTSTTCEE-EECSCCCHHHHHHHHHHHHHGGGC-SE-EEEEE
T ss_pred             HHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHHHHhCCCCCE-EEECCccHHHHHHHHHHHHHHhhc-CC-EEEEE
Confidence            877777655443   33 455466774332211000111  13333 4467653322  111222111111 11 12233


Q ss_pred             ecc----C-CCHHHHHHHHHHHHHcC
Q 021356          265 VHQ----D-VDGRATNVALGWSVALG  285 (313)
Q Consensus       265 p~~----d-~~~ea~e~a~~L~~alG  285 (313)
                      .|.    | .++.|+.+++.+.+..+
T Consensus       131 ~HH~~K~DaPSGTA~~lae~i~~~~~  156 (245)
T 1p9l_A          131 LHHPHKADAPSGTAARTAKLIAEARK  156 (245)
T ss_dssp             EECTTCCSSSCHHHHHHHHHHHHHTT
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHhhc
Confidence            343    3 47889999999887766

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=95.75  E-value=0.042  Score=52.33  Aligned_cols=73  Identities=11%  Similarity=0.088  Sum_probs=52.7

Q ss_pred             cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021356          106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~  175 (313)
                      ..|+| .+|++||=|  ++..|++..+...      |+++.+...++    +...+    .|.+.|...+  ...+++|+
T Consensus       163 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~ea  233 (325)
T 1vlv_A          163 GRLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEA  233 (325)
T ss_dssp             SCSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHH
T ss_pred             CCcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence            46889 999999985  9999999999999      99987775432    11222    2335663210  14689999


Q ss_pred             hccCCEEEEccc
Q 021356          176 ISGSDLVLLLIS  187 (313)
Q Consensus       176 i~~ADvIiLavP  187 (313)
                      ++++|+|..-+=
T Consensus       234 v~~aDvvyt~~w  245 (325)
T 1vlv_A          234 LAGADVVYTDVW  245 (325)
T ss_dssp             HTTCSEEEECCC
T ss_pred             HccCCEEEeccc
Confidence            999999998544

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.71  E-value=0.052  Score=53.61  Aligned_cols=71  Identities=21%  Similarity=0.191  Sum_probs=42.5

Q ss_pred             CEEEEEcccch-HHHHHHHHHh--chhhhcCCc---EEEEEecCCc--ccHH----HHH----HCCceecCCCcCCHHhh
Q 021356          112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKSDI---VVKVGLRKGS--RSFA----EAR----AAGFTEENGTLGDIYET  175 (313)
Q Consensus       112 kkIgIIG~G~m-G~AlA~~Lr~--~~~~~~~G~---~Vivg~r~~~--~s~~----~A~----~~G~~~~~~~~~~~~e~  175 (313)
                      +||+|||.|+. |.+++..|..  .      ++   +|++.++ ++  +..+    .+.    ..+....-....+..++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~------~l~~~ev~L~Di-~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~ea   80 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYH------ELPVGELWLVDI-PEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRA   80 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTT------TCCEEEEEEECC-GGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC------CCCCCEEEEEEc-CCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHH
Confidence            79999999998 7787766654  3      33   4544444 33  2111    111    12211000012477789


Q ss_pred             hccCCEEEEcccch
Q 021356          176 ISGSDLVLLLISDA  189 (313)
Q Consensus       176 i~~ADvIiLavP~~  189 (313)
                      +++||+|+++++..
T Consensus        81 l~gAD~VVitagv~   94 (450)
T 1s6y_A           81 LDGADFVTTQFRVG   94 (450)
T ss_dssp             HTTCSEEEECCCTT
T ss_pred             hCCCCEEEEcCCCC
Confidence            99999999999954

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.70  E-value=0.0097  Score=55.74  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=41.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecCC--CcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG--TLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~--~~~~~~e~i~~ADvIi  183 (313)
                      |||+|||.|.+|.++|..|...      +.  ++.+.+.........|.+..    +.....  ...+..+.+++||+|+
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVv   74 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIV   74 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEE
Confidence            7999999999999999998877      65  44444433222222222210    010000  0122346789999999


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      ++.
T Consensus        75 itA   77 (294)
T 2x0j_A           75 VTA   77 (294)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            976

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.70  E-value=0.016  Score=55.70  Aligned_cols=91  Identities=12%  Similarity=0.074  Sum_probs=57.4

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHH---HHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEA---RAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A---~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |.+||||| .|..|..+.+.|.+.     +..++.......+  +.....   .......+   ..+.+++..++|+|++
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~h-----P~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~   84 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT   84 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence            37899998 799999999999876     1335433322211  222211   00112211   1245555588999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+|.....++..++     .|..|+|.++-
T Consensus        85 alp~~~s~~~~~~~-----~g~~VIDlSsd  109 (351)
T 1vkn_A           85 ALPAGASYDLVREL-----KGVKIIDLGAD  109 (351)
T ss_dssp             CCSTTHHHHHHTTC-----CSCEEEESSST
T ss_pred             CCCcHHHHHHHHHh-----CCCEEEECChh
Confidence            99988766666544     68999998874

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.67  E-value=0.034  Score=52.77  Aligned_cols=91  Identities=12%  Similarity=0.058  Sum_probs=54.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC--CcccHHHHHHCCc----------------eecCC------
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGF----------------TEENG------  167 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~----------------~~~~~------  167 (313)
                      .+|||+|+|.||..+++.|.+.     .+++++...+.  +........+..-                .. ++      
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~   77 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF   77 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence            5899999999999999998764     25776555552  3322222222110                00 00      


Q ss_pred             CcCCHHhh-h--ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          168 TLGDIYET-I--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       168 ~~~~~~e~-i--~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      ...+++++ .  .++|+|+.|+|.....+....   +++.|+.++|.
T Consensus        78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~---~l~aGak~V~i  121 (335)
T 1u8f_O           78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAGA---HLQGGAKRVII  121 (335)
T ss_dssp             CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGG---GGGGTCSEEEE
T ss_pred             ecCCHHHCccccCCCCEEEECCCchhhHHHHHH---HHhCCCeEEEe
Confidence            01244444 1  579999999998887665543   45567544433

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.63  E-value=0.08  Score=50.70  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhh
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~i  176 (313)
                      ..|+| .||++||= +++..|++..+...      |+++.+...++    +...+.    |.+.|...+  ...+++|++
T Consensus       175 G~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~--~~~d~~eav  245 (340)
T 4ep1_A          175 NTFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIE--ILHNPELAV  245 (340)
T ss_dssp             SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEE--EESCHHHHH
T ss_pred             CCCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EECCHHHHh
Confidence            35889 99999994 58899999999888      99987775442    122222    335552210  146899999


Q ss_pred             ccCCEEEEccc
Q 021356          177 SGSDLVLLLIS  187 (313)
Q Consensus       177 ~~ADvIiLavP  187 (313)
                      +++|+|..-+=
T Consensus       246 ~~aDVvyt~~w  256 (340)
T 4ep1_A          246 NEADFIYTDVW  256 (340)
T ss_dssp             TTCSEEEECCC
T ss_pred             CCCCEEEecCc
Confidence            99999988653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.61  E-value=0.06  Score=45.58  Aligned_cols=69  Identities=14%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC-CHHhhhccCCEEEEcccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~-~~~e~i~~ADvIiLavP~  188 (313)
                      |+|.|+| .|.+|..+++.|.+.      |++|++..|..++.....  .++........ ...+.+.++|+||.+...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            6899999 599999999999999      999877777643221111  33221001111 111678899999998754

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.59  E-value=0.043  Score=54.60  Aligned_cols=75  Identities=20%  Similarity=0.092  Sum_probs=41.4

Q ss_pred             CEEEEEcccch-HHHHHHHHHhchhhhcC-CcEEEEEecCCcccHHH----HH----HCCceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAE----AR----AAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~m-G~AlA~~Lr~~~~~~~~-G~~Vivg~r~~~~s~~~----A~----~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||.|.. |.++|..|....  .+. +.+|.+.++ +++..+.    ..    ..+....-....+.++++++||+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~--~~l~~~eV~L~Di-~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDN-DKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECS-CHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCC--CCCCCCEEEEEeC-CHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence            69999999998 555665554320  001 235555544 3322111    11    11111000013477889999999


Q ss_pred             EEEcccch
Q 021356          182 VLLLISDA  189 (313)
Q Consensus       182 IiLavP~~  189 (313)
                      ||+++|..
T Consensus       106 VViaag~~  113 (472)
T 1u8x_X          106 VMAHIRVG  113 (472)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCc
Confidence            99999874

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.59  E-value=0.033  Score=54.65  Aligned_cols=70  Identities=21%  Similarity=0.210  Sum_probs=49.2

Q ss_pred             ccCCCCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ++..+++|.|||+|-.|.+ +|+.|++.      |++|.+.+...+...+...+.|+....+.  .. +.++++|+||+.
T Consensus        14 ~~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--~~-~~~~~a~~vv~s   84 (475)
T 1p3d_A           14 EMRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIGH--AE-EHIEGASVVVVS   84 (475)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEESC--CG-GGGTTCSEEEEC
T ss_pred             ccccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECCC--CH-HHcCCCCEEEEC
Confidence            3455589999999999998 99999998      99887666554433344556776542111  22 456789999984

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.53  E-value=0.038  Score=52.59  Aligned_cols=94  Identities=13%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC--CcccHHHHHH----CCc-----ee--cCC-------C---
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARA----AGF-----TE--ENG-------T---  168 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~----~G~-----~~--~~~-------~---  168 (313)
                      .+|||+|+|.||..+++.|.+.     .+++++...+.  +.+......+    .|.     +.  ++.       .   
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v   78 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV   78 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence            4899999999999999998764     25676555542  2222222211    111     10  000       0   


Q ss_pred             c--CCHHhh-h--ccCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          169 L--GDIYET-I--SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       169 ~--~~~~e~-i--~~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                      .  .+++++ .  .++|+|+.++|.....+.....++   .|+  +|++.++
T Consensus        79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~pa  127 (337)
T 3e5r_O           79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISAPS  127 (337)
T ss_dssp             ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESSCC
T ss_pred             EecCChHHccccccCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEecCC
Confidence            1  144443 1  479999999999888777665543   455  6766554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.51  E-value=0.1  Score=48.95  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i~-----~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +| ++.+.+++..+.+++.|...- +...  .+..+.+.     ..
T Consensus       191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~V-i~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRI-IGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHH------TCSEE-EEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeE-EEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence            57 8999999999999999999998      98 55 455555566778888886320 0000  12333332     58


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      |+|+-++...   +.+++....++++ -.++.++
T Consensus       263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             SEEEECSCCH---HHHHHHHHTBCTTTCEEEECC
T ss_pred             CEEEECCCCH---HHHHHHHHHHhcCCCEEEEEc
Confidence            9999998753   3456666778887 6555443

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.41  E-value=0.022  Score=53.83  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCC
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSD  180 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G--~~~~~~~~~~~~e~i~~AD  180 (313)
                      ..|+| .||++|| .+++..|++..+...      |+++.+...++-  +..-.+++.|  +..    ..+++|+++++|
T Consensus       150 g~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~g~~v~~----~~d~~eav~~aD  218 (309)
T 4f2g_A          150 GPIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLVDAESAPFYQV----FDDPNEACKGAD  218 (309)
T ss_dssp             SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGSCGGGGGGEEE----CSSHHHHTTTCS
T ss_pred             CCCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHcCCeEEE----EcCHHHHhcCCC
Confidence            45889 9999999 568999999999998      998776654321  1000011223  222    468999999999


Q ss_pred             EEEEcc
Q 021356          181 LVLLLI  186 (313)
Q Consensus       181 vIiLav  186 (313)
                      +|..-+
T Consensus       219 vvyt~~  224 (309)
T 4f2g_A          219 LVTTDV  224 (309)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999865

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.39  E-value=0.033  Score=45.53  Aligned_cols=85  Identities=21%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||.    +..|..+.++|++.      |++|+-.+.+..+      -.|...    ..++.|+=. -|++++++|
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~p   67 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYIN   67 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECSC
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEeC
Confidence            78999997    56899999999999      9876544433221      145442    346666555 899999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +....+++++.... .... |+...|+.
T Consensus        68 ~~~v~~~v~e~~~~-g~k~-v~~~~G~~   93 (122)
T 3ff4_A           68 PQNQLSEYNYILSL-KPKR-VIFNPGTE   93 (122)
T ss_dssp             HHHHGGGHHHHHHH-CCSE-EEECTTCC
T ss_pred             HHHHHHHHHHHHhc-CCCE-EEECCCCC
Confidence            99999999987654 2234 56788874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.39  E-value=0.13  Score=48.44  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i~-----~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +|+ +.+.+++..+.+++.|...- +...  .+..+.+.     ..
T Consensus       195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRII-AIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV  266 (376)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence            57 8999999999999999999998      98 554 55555566778888886320 0000  12333332     58


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      |+|+-++...   +.+++....++++ -.++.++
T Consensus       267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             SEEEESSCCH---HHHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEECCCCH---HHHHHHHHHhhcCCCEEEEEC
Confidence            9999988753   3456666778887 5555443

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=95.35  E-value=0.063  Score=51.49  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHH-------------HHCCceecCCCcCCHHhh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEA-------------RAAGFTEENGTLGDIYET  175 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A-------------~~~G~~~~~~~~~~~~e~  175 (313)
                      .+||||| .|..|.-+.+.|.+.     +..++.....+.+  +.....             .+.-+.     ..+. +.
T Consensus         8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~   76 (359)
T 4dpk_A            8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL   76 (359)
T ss_dssp             EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred             CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence            6899999 699999999987664     1335433322222  222211             111111     1122 34


Q ss_pred             hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +.++|+||+|+|.....++..++.   +.|+.++|.++-
T Consensus        77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~  112 (359)
T 4dpk_A           77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD  112 (359)
T ss_dssp             CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred             hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence            589999999999988877777664   458899988764

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=95.35  E-value=0.063  Score=51.49  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHH-------------HHCCceecCCCcCCHHhh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEA-------------RAAGFTEENGTLGDIYET  175 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A-------------~~~G~~~~~~~~~~~~e~  175 (313)
                      .+||||| .|..|.-+.+.|.+.     +..++.....+.+  +.....             .+.-+.     ..+. +.
T Consensus         8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~   76 (359)
T 4dpl_A            8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL   76 (359)
T ss_dssp             EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred             CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence            6899999 699999999987664     1335433322222  222211             111111     1122 34


Q ss_pred             hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +.++|+||+|+|.....++..++.   +.|+.++|.++-
T Consensus        77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~  112 (359)
T 4dpl_A           77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD  112 (359)
T ss_dssp             CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred             hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence            589999999999988877777664   458899988764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.34  E-value=0.12  Score=48.49  Aligned_cols=93  Identities=18%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i~-----~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +| ++.+.+++..+.+++.|...- +...  .+..+.+.     ..
T Consensus       192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~V-i~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRI-IAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV  263 (374)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEE-EEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEE-EEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence            57 8999999999999999999998      98 55 455555566778888886320 0000  13334333     48


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      |+|+-++...   +.++.....++++ -.++.++
T Consensus       264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          264 DFSLECVGNV---GVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCCCH---HHHHHHHHHhhcCCcEEEEEc
Confidence            9999998753   2456666778886 5555443

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.32  E-value=0.084  Score=50.92  Aligned_cols=71  Identities=15%  Similarity=0.162  Sum_probs=52.6

Q ss_pred             cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHH----HHHHCC--ceecCCCcCCHH
Q 021356          106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIY  173 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~~~~~~~~~  173 (313)
                      ..|+| .+|++||=|  +++.|++..+...      |+++.+...++    +...+    .+.+.|  +..    ..+++
T Consensus       172 g~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~  240 (359)
T 2w37_A          172 GKLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLD  240 (359)
T ss_dssp             SCCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred             CCcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHH
Confidence            46889 999999985  9999999999999      99987775432    11222    223556  332    46899


Q ss_pred             hhhccCCEEEEccc
Q 021356          174 ETISGSDLVLLLIS  187 (313)
Q Consensus       174 e~i~~ADvIiLavP  187 (313)
                      |++++||+|..-+=
T Consensus       241 eav~~aDvvytd~w  254 (359)
T 2w37_A          241 EGLKGSNVVYTDVW  254 (359)
T ss_dssp             HHHTTCSEEEECCS
T ss_pred             HHhcCCCEEEEccc
Confidence            99999999998554

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.29  E-value=0.085  Score=49.81  Aligned_cols=72  Identities=14%  Similarity=0.090  Sum_probs=51.0

Q ss_pred             cccC-CCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHH----HHCCceecCCCcCCHHhh
Q 021356          106 DAFN-GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~-GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~~~~~~~~~e~  175 (313)
                      ..|+ | .+|++|| .+++..|++..+...      |+++.+...++    +...+.+    .+.|...+  ...+++|+
T Consensus       141 g~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~ea  211 (307)
T 3tpf_A          141 KMQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEA  211 (307)
T ss_dssp             CCGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHH
T ss_pred             CCCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence            4578 9 9999999 458999999999988      99887765432    1222222    24443210  14689999


Q ss_pred             hccCCEEEEcc
Q 021356          176 ISGSDLVLLLI  186 (313)
Q Consensus       176 i~~ADvIiLav  186 (313)
                      ++++|+|..-+
T Consensus       212 v~~aDvvyt~~  222 (307)
T 3tpf_A          212 LKDKDVVITDT  222 (307)
T ss_dssp             HTTCSEEEECC
T ss_pred             hcCCCEEEecC
Confidence            99999999877

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.28  E-value=0.12  Score=48.58  Aligned_cols=93  Identities=23%  Similarity=0.338  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i~-----~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +|+ +.+.+++..+.+++.|...- +...  .+..+.+.     ..
T Consensus       191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARII-GVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence            57 8999999999999999999998      98 554 55545566778888885310 0000  12333332     48


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      |+|+-++...   +.+++....++++ -.++.++
T Consensus       263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             SEEEECSCCH---HHHHHHHHHBCTTTCEEEECS
T ss_pred             cEEEECCCCH---HHHHHHHHHhhcCCcEEEEec
Confidence            9999998753   2455666677877 6555443

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=95.25  E-value=0.018  Score=56.59  Aligned_cols=130  Identities=8%  Similarity=0.034  Sum_probs=70.7

Q ss_pred             cc-cCCCCEEEEEcccchHHHHHHHHHh-chhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCE-E
Q 021356          106 DA-FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL-V  182 (313)
Q Consensus       106 ~~-l~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADv-I  182 (313)
                      .+ |+| ++++|+|+|+||..+|+.|++ +      |++|+...|+...         ..+.+  ..+++++++.+|. .
T Consensus       207 ~~~l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~~g~---------~~~~~--gvdl~~L~~~~d~~~  268 (419)
T 1gtm_A          207 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDSKGG---------IYNPD--GLNADEVLKWKNEHG  268 (419)
T ss_dssp             CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECSSCE---------EEEEE--EECHHHHHHHHHHHS
T ss_pred             CcccCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCCCcc---------ccCcc--CCCHHHHHHHHHhcC
Confidence            45 999 999999999999999999999 9      9998766555321         11000  1145555554432 1


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEec-CchhhhhhhcccCCCCCccEEEeccCCCchh-HHHHHHhcccccCCCce
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGIN  260 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~-~r~lf~~G~e~~g~G~~  260 (313)
                      .| +|......+=.+.+..||+ .+++.++ |-.+.....  ..+  +...|...=|.|-+. -..++..        .+
T Consensus       269 ~l-~~l~~t~~i~~~~l~~mk~-dilIn~ArG~~Vde~a~--~aL--~~~~I~~aAneP~t~~a~~ll~~--------~~  334 (419)
T 1gtm_A          269 SV-KDFPGATNITNEELLELEV-DVLAPAAIEEVITKKNA--DNI--KAKIVAEVANGPVTPEADEILFE--------KG  334 (419)
T ss_dssp             SS-TTCTTSEEECHHHHHHSCC-SEEEECSCSCCBCTTGG--GGC--CCSEEECCSSSCBCHHHHHHHHH--------TT
T ss_pred             Ee-ecCccCeeeCHHHHHhCCC-CEEEECCCcccCCHHHH--HHh--cCCEEEEeeCCCCCcchHHHHhc--------CC
Confidence            11 2221111111234456887 5888664 322211111  122  234444222555433 2456653        35


Q ss_pred             EEEEecc
Q 021356          261 SSFAVHQ  267 (313)
Q Consensus       261 ~iitp~~  267 (313)
                      .+++||-
T Consensus       335 V~itPhi  341 (419)
T 1gtm_A          335 ILQIPDF  341 (419)
T ss_dssp             CEEECHH
T ss_pred             EEEECch
Confidence            7789986

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.22  E-value=0.061  Score=49.91  Aligned_cols=66  Identities=26%  Similarity=0.333  Sum_probs=40.5

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc--EEEEEecC-CcccHH-HHHHC--------CceecCCCcCCHHhhhcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSFA-EARAA--------GFTEENGTLGDIYETISG  178 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~-~~~s~~-~A~~~--------G~~~~~~~~~~~~e~i~~  178 (313)
                      +||+||| .|.+|.+++..|...      ++  ++.+.+.+ +++..+ .+.+.        .....   ..+ .+++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~---~~~-~~a~~~   70 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR---QGG-YEDTAG   70 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE---ECC-GGGGTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEE---eCC-HHHhCC
Confidence            6899999 999999999998776      65  44444331 221111 11110        11100   123 678999


Q ss_pred             CCEEEEccc
Q 021356          179 SDLVLLLIS  187 (313)
Q Consensus       179 ADvIiLavP  187 (313)
                      ||+||++..
T Consensus        71 aDvVi~~ag   79 (303)
T 1o6z_A           71 SDVVVITAG   79 (303)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEcCC
Confidence            999999874

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.16  E-value=0.051  Score=50.97  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=43.2

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCC----cc-cHHHH--HHCC---ceecCCCcCCHH
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SR-SFAEA--RAAG---FTEENGTLGDIY  173 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~----~~-s~~~A--~~~G---~~~~~~~~~~~~  173 (313)
                      +||+|||. |.+|.+++..|...      |+       ++.+ .|.+    ++ ....+  ...+   +...-....+..
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l-~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~   78 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQL-LEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM   78 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEE-ECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEE-EcCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence            79999997 99999999999877      64       5544 5544    21 11111  1121   110000124678


Q ss_pred             hhhccCCEEEEccc
Q 021356          174 ETISGSDLVLLLIS  187 (313)
Q Consensus       174 e~i~~ADvIiLavP  187 (313)
                      +++++||+||++..
T Consensus        79 ~al~~aD~Vi~~ag   92 (329)
T 1b8p_A           79 TAFKDADVALLVGA   92 (329)
T ss_dssp             HHTTTCSEEEECCC
T ss_pred             HHhCCCCEEEEeCC
Confidence            89999999998753

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.14  E-value=0.022  Score=54.46  Aligned_cols=71  Identities=15%  Similarity=0.103  Sum_probs=44.4

Q ss_pred             cCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcc-cHHHHH--HCC-ceecC-CCcCCHHhhhccC
Q 021356          108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR-SFAEAR--AAG-FTEEN-GTLGDIYETISGS  179 (313)
Q Consensus       108 l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~-s~~~A~--~~G-~~~~~-~~~~~~~e~i~~A  179 (313)
                      +.+ +||+|||. |.+|.++|..+...      |.  ++++. |.+.+ ....+.  ..+ +.... ....+..+.+++|
T Consensus         6 ~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLi-Di~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dA   77 (343)
T 3fi9_A            6 LTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLY-DPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDA   77 (343)
T ss_dssp             SCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEE-CSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTE
T ss_pred             cCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEE-eCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCC
Confidence            456 89999997 99999999988877      64  55444 44332 111111  111 11000 0124677889999


Q ss_pred             CEEEEcc
Q 021356          180 DLVLLLI  186 (313)
Q Consensus       180 DvIiLav  186 (313)
                      |+||++.
T Consensus        78 DvVvita   84 (343)
T 3fi9_A           78 KYIVSSG   84 (343)
T ss_dssp             EEEEECC
T ss_pred             CEEEEcc
Confidence            9999985

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.10  E-value=0.011  Score=51.68  Aligned_cols=93  Identities=12%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~ADvIiLav  186 (313)
                      |+|.|.| .|-+|.++++.|.+.      | ++|++..|+.++..+ ....++..-.....   +++++++++|+||.+.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a   96 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL   96 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence            8899999 799999999999998      9 788777665332111 00112110001122   3456788999999877


Q ss_pred             cchhHHHHHHHHHhcC---CCCcEEEEe
Q 021356          187 SDAAQADNYEKIFSCM---KPNSILGLS  211 (313)
Q Consensus       187 P~~a~~~vi~ei~~~m---k~gaiLid~  211 (313)
                      .........+.+.+.|   +.+.+|..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iS  124 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVL  124 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEe
Confidence            6544333333344333   223455443

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.09  E-value=0.13  Score=48.29  Aligned_cols=93  Identities=20%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i~-----~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +| ++.+.+++..+.+++.|...- +...  .+..+.+.     ..
T Consensus       190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~V-i~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRI-IGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHH------TCSEE-EEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeE-EEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence            57 8999999999999999999998      98 55 455545566677888785310 0000  12333332     58


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      |+|+-++...   +.+++....++++ -.++.++
T Consensus       262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          262 DYSFECIGNV---KVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCCcH---HHHHHHHHhhccCCcEEEEEe
Confidence            9999998753   2456666778887 6655443

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.06  E-value=0.052  Score=53.73  Aligned_cols=69  Identities=17%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             CCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc--cc
Q 021356          111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS  187 (313)
Q Consensus       111 ikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa--vP  187 (313)
                      +++|-|||.|-.|.+ +|+.|++.      |++|.+.+.......+..++.|+...   .....+.+.++|+||+.  +|
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~   92 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS   92 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence            489999999999996 89999999      99987666554444455566787642   22334457889999984  55


Q ss_pred             c
Q 021356          188 D  188 (313)
Q Consensus       188 ~  188 (313)
                      +
T Consensus        93 ~   93 (494)
T 4hv4_A           93 A   93 (494)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.05  E-value=0.066  Score=48.42  Aligned_cols=88  Identities=15%  Similarity=0.219  Sum_probs=54.7

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------------------cccHHHHHH-----
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA-----  159 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~-----  159 (313)
                      ...|++ ++|.|||+|-+|..++++|...      |+ ++.+.++..                   .+....+.+     
T Consensus        23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   95 (251)
T 1zud_1           23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN   95 (251)
T ss_dssp             HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence            467888 9999999999999999999998      87 444443210                   111111111     


Q ss_pred             CCceec--CCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       160 ~G~~~~--~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                      .++..+  ....  .+.++.++++|+||.++........+++..
T Consensus        96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~  139 (251)
T 1zud_1           96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC  139 (251)
T ss_dssp             TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence            121100  0001  134567889999999998766555666544

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.04  E-value=0.065  Score=50.41  Aligned_cols=72  Identities=21%  Similarity=0.156  Sum_probs=41.4

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH--CC-c--eecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G-~--~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |||+||| .|.+|.+++..|....   +...++.+. +.++.....+.+  .. .  ........+..+.+++||+||++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~-Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~   76 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLY-DIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEE-CSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEE-ecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEe
Confidence            6899999 8999999999986530   002344444 443322222222  11 1  10000002456789999999998


Q ss_pred             cc
Q 021356          186 IS  187 (313)
Q Consensus       186 vP  187 (313)
                      ..
T Consensus        77 ag   78 (312)
T 3hhp_A           77 AG   78 (312)
T ss_dssp             CS
T ss_pred             CC
Confidence            73

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.01  E-value=0.023  Score=54.02  Aligned_cols=88  Identities=14%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhc---hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~---~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      .+|||||+|.||..+++.+++.   +.+.+.+++++...+++..   .+  .++.. .....+.++++ +.|+|+.++|.
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~   76 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG   76 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence            5799999999999999998765   1111223454433333321   11  12210 01134777888 99999999997


Q ss_pred             hhH-HHHHHHHHhcCCCCcEEE
Q 021356          189 AAQ-ADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       189 ~a~-~~vi~ei~~~mk~gaiLi  209 (313)
                      ... .+.+.+.+   +.|+-|+
T Consensus        77 ~~~a~~~~~~AL---~aGKhVV   95 (332)
T 2ejw_A           77 VEAPLRLVLPAL---EAGIPLI   95 (332)
T ss_dssp             SHHHHHHHHHHH---HTTCCEE
T ss_pred             cHHHHHHHHHHH---HcCCeEE
Confidence            754 34544333   3455444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.01  E-value=0.044  Score=47.01  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=46.5

Q ss_pred             CEEEEEc-ccchHHHHHHHHH-hchhhhcCCcEEEEEecCCc-ccHHHH-HHCCceecCCCcC---CHHhhhccCCEEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLG---DIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~-~s~~~A-~~~G~~~~~~~~~---~~~e~i~~ADvIiL  184 (313)
                      ++|.|+| .|.+|.++++.|. +.      |++|++..|+.+ +..+.+ ...++..-.....   ++.++++++|+||.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            5699999 6999999999999 78      999877776533 221111 1122211001122   34567889999999


Q ss_pred             cccch
Q 021356          185 LISDA  189 (313)
Q Consensus       185 avP~~  189 (313)
                      +....
T Consensus        80 ~ag~~   84 (221)
T 3r6d_A           80 GAMES   84 (221)
T ss_dssp             SCCCC
T ss_pred             cCCCC
Confidence            88764

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.00  E-value=0.051  Score=51.32  Aligned_cols=93  Identities=11%  Similarity=0.049  Sum_probs=52.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC--cEEEEEecCCcc-cHH------HHH---HCCceecCCCcC---CHHhhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSR-SFA------EAR---AAGFTEENGTLG---DIYETI  176 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G--~~Vivg~r~~~~-s~~------~A~---~~G~~~~~~~~~---~~~e~i  176 (313)
                      .+|||||+|.||..+++.|++.-+..+.|  ++++...+++.. ..+      .+.   ..++..   ...   +.++++
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll   83 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL   83 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence            57999999999999999987651001112  454433333221 111      011   112210   122   677777


Q ss_pred             -ccCCEEEEcccch----hHHHHHHHHHhcCCCCcEEEE
Q 021356          177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       177 -~~ADvIiLavP~~----a~~~vi~ei~~~mk~gaiLid  210 (313)
                       .+.|+|+.++|..    .+.+++.+.   |+.|+-|+.
T Consensus        84 ~~~iDvVv~~t~~~~~~~~~~~~~~~A---L~aGkhVvt  119 (331)
T 3c8m_A           84 ARDFDIVVDATPASADGKKELAFYKET---FENGKDVVT  119 (331)
T ss_dssp             HSSCSEEEECSCCCSSSHHHHHHHHHH---HHTTCEEEE
T ss_pred             CCCCCEEEECCCCCCccchHHHHHHHH---HHCCCeEEe
Confidence             4689999999986    444455443   345665554

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=94.99  E-value=0.02  Score=54.84  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=49.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhcc------------
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG------------  178 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~------------  178 (313)
                      .+|||||+|.||..+++.+++. . .+.+++++...+.....  .+.+. |+..    ..+.++++++            
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~-~-~g~~~~vvaV~d~~~~~--~~~~~~gi~~----~~~~~e~l~~~~~~~~did~v~   76 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAM-K-STITYNLVLLAEAERSL--ISKDFSPLNV----GSDWKAALAASTTKTLPLDDLI   76 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-C-CSSEEEEEEEECSSBEE--ECSSCSCCSC----TTCHHHHHHTCCCBCCCHHHHH
T ss_pred             EEEEEEecCHHHHHHHHHHHhc-C-CCCCEEEEEEEECChhh--hccccCCCCc----cccHHHHHhcccCCCCCHHHHH
Confidence            5899999999999999999875 0 01124443333322111  11111 3210    1233333332            


Q ss_pred             --------CCEEEEcccchhHHHHHHHHHhcCCCCcEEEE
Q 021356          179 --------SDLVLLLISDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       179 --------ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                              .|+|+.|+|...+.+.+.   ..|+.|+-|+.
T Consensus        77 e~~~~~~~~DvVV~~t~~~~~a~~~~---~AL~aGkhVVt  113 (358)
T 1ebf_A           77 AHLKTSPKPVILVDNTSSAYIAGFYT---KFVENGISIAT  113 (358)
T ss_dssp             HHHTTCSSCEEEEECSCCHHHHTTHH---HHHHTTCEEEC
T ss_pred             HHhhhccCCcEEEEcCCChHHHHHHH---HHHHCCCeEEe
Confidence                    389999999876655443   34556776654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=94.98  E-value=0.026  Score=51.44  Aligned_cols=73  Identities=21%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----C--ceecCCCcC---CHHhhh
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENGTLG---DIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G--~~~~~~~~~---~~~e~i  176 (313)
                      +++| +++.|+| .|-+|.++++.|.+.      |.+|++..|+.++..+.+.+.    +  +..-+  ..   +..+++
T Consensus       116 ~l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D--~~~~~~~~~~~  186 (287)
T 1lu9_A          116 SVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE--TADDASRAEAV  186 (287)
T ss_dssp             CCTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE--CCSHHHHHHHT
T ss_pred             CCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEec--CCCHHHHHHHH
Confidence            4789 9999999 999999999999998      998877777643332222211    2  11100  22   245677


Q ss_pred             ccCCEEEEcccc
Q 021356          177 SGSDLVLLLISD  188 (313)
Q Consensus       177 ~~ADvIiLavP~  188 (313)
                      ++.|+||-+++.
T Consensus       187 ~~~DvlVn~ag~  198 (287)
T 1lu9_A          187 KGAHFVFTAGAI  198 (287)
T ss_dssp             TTCSEEEECCCT
T ss_pred             HhCCEEEECCCc
Confidence            889999999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.93  E-value=0.093  Score=49.45  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCC--cCCHHhhhc-----cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~--~~~~~e~i~-----~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +| ++.+.+++..+.+++.|...- +..  ..+..+.+.     ..
T Consensus       193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~V-i~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRI-IGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             TT-CCEEEECCSHHHHHHHHHHHHH------TCSCE-EEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeE-EEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence            57 8999999999999999999998      98 55 455555566778888886320 000  123333332     48


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCC-cEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~g-aiLid~~  212 (313)
                      |+|+-++...   +.++.....++++ -.++.++
T Consensus       265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          265 DYSFECIGNV---SVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCCCH---HHHHHHHHHhhccCCEEEEEc
Confidence            9999998853   3456666778885 5555444

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.89  E-value=0.18  Score=48.02  Aligned_cols=97  Identities=18%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~A  179 (313)
                      -+| .+|.|+|.|.+|...++.++..      |. +| ++.+.+++..+.+++.|...- +....+..+.+      ...
T Consensus       212 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~V-i~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~  283 (404)
T 3ip1_A          212 RPG-DNVVILGGGPIGLAAVAILKHA------GASKV-ILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGA  283 (404)
T ss_dssp             CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEE-EEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCC
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEE-EEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCC
Confidence            357 8999999999999999999998      98 55 555555666778888885320 11112333333      259


Q ss_pred             CEEEEcccchh-HHH-HHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAA-QAD-NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a-~~~-vi~ei~~~mk~gaiLid~~  212 (313)
                      |+|+-++.... ..+ .++-+...++++-.++.++
T Consensus       284 D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          284 KLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            99999998762 222 3333334447777766554

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=94.87  E-value=0.21  Score=46.99  Aligned_cols=71  Identities=14%  Similarity=0.045  Sum_probs=51.2

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ..|+| .+|++||= +++..|++..+...      |+++.+...++-.. .+.-...++..    ..+++|+++++|+|.
T Consensus       150 g~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy  218 (301)
T 2ef0_A          150 GGLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALY  218 (301)
T ss_dssp             SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEE
T ss_pred             CCcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEE
Confidence            46889 99999996 79999999999999      99987776543211 11111112432    458999999999999


Q ss_pred             Eccc
Q 021356          184 LLIS  187 (313)
Q Consensus       184 LavP  187 (313)
                      .-+=
T Consensus       219 ~~~~  222 (301)
T 2ef0_A          219 TDVW  222 (301)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            8554

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=94.86  E-value=0.052  Score=51.22  Aligned_cols=66  Identities=21%  Similarity=0.215  Sum_probs=48.4

Q ss_pred             cccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ..|+| .||++||-|   ++..|++..+...      |+++.+...++-.. +. .+.|.      ..+++|+++++|+|
T Consensus       143 g~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~~-~~~g~------~~d~~eav~~aDvv  207 (304)
T 3r7f_A          143 NTFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-EE-NTFGT------YVSMDEAVESSDVV  207 (304)
T ss_dssp             SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-TT-CSSCE------ECCHHHHHHHCSEE
T ss_pred             CCCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-ch-hhcCc------cCCHHHHhCCCCEE
Confidence            45889 999999975   6999999999999      99877665432111 10 12332      34899999999999


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      ....
T Consensus       208 yt~~  211 (304)
T 3r7f_A          208 MLLR  211 (304)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            8853

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.71  E-value=0.065  Score=49.85  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|+... .+++..+.+++.|...-   ..+.+++.+..|+|+-++..
T Consensus       176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~-~~~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~  244 (348)
T 3two_A          176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFA-RNEHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT  244 (348)
T ss_dssp             TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEEC-SSSTTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred             CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEe-CCHHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence            67 9999999999999999999998      99865444 44556778888886431   22334444479999999886


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEec
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..   .++.....++++-.++.++
T Consensus       245 ~~---~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          245 HY---DLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             CC---CHHHHHTTEEEEEEEEECC
T ss_pred             HH---HHHHHHHHHhcCCEEEEEC
Confidence            53   3555666778877776554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.70  E-value=0.19  Score=46.77  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CC-HHhh---h-----c
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IYET---I-----S  177 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~-~~e~---i-----~  177 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+| ++.+.+++..+.+++.|...- +... .+ .+++   .     .
T Consensus       168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~V-i~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~  239 (352)
T 1e3j_A          168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFV-VCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD  239 (352)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCEE-EEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCEE-EEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence            57 9999999999999999999998      9885 455545556677888885310 0010 11 2222   2     3


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..|+|+-++....   .++.....++++-.++.++
T Consensus       240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             CCSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred             CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence            5899999987643   3555566778877666554

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=94.68  E-value=0.1  Score=50.16  Aligned_cols=68  Identities=15%  Similarity=0.093  Sum_probs=48.3

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHC--------CceecCCCcCCHHh
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAA--------GFTEENGTLGDIYE  174 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~--------G~~~~~~~~~~~~e  174 (313)
                      |+| .+|++||=+ ++..|++..+...      |+++.+....+-    ...+.+++.        ++..    ..+++|
T Consensus       186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e  254 (353)
T 3sds_A          186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV  254 (353)
T ss_dssp             CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred             cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence            589 999999965 7888888888888      999877654421    222333321        2332    468999


Q ss_pred             hhccCCEEEEcc
Q 021356          175 TISGSDLVLLLI  186 (313)
Q Consensus       175 ~i~~ADvIiLav  186 (313)
                      +++++|+|..-+
T Consensus       255 av~~aDVvytd~  266 (353)
T 3sds_A          255 AVKDADVIVTDT  266 (353)
T ss_dssp             HTTTCSEEEECC
T ss_pred             HhcCCCEEEeCC
Confidence            999999998754

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.65  E-value=0.11  Score=48.57  Aligned_cols=93  Identities=13%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhh-----cc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG  178 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~---~~~~~e~i-----~~  178 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +|+ +.+.+++..+.+++.|...- +..   ..+..+.+     ..
T Consensus       171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g  242 (356)
T 1pl8_A          171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVV-VTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK  242 (356)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence            57 9999999999999999999998      98 654 44444555677888886310 000   00111122     35


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .|+|+-++....   .++.....++++-.++.++
T Consensus       243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             CSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred             CCEEEECCCChH---HHHHHHHHhcCCCEEEEEe
Confidence            899999987532   3555566778877666554

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.63  E-value=0.2  Score=46.18  Aligned_cols=96  Identities=17%  Similarity=0.115  Sum_probs=64.7

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccC
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS  179 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~A  179 (313)
                      ..+| .++.|+|.|.+|...++.++..      |..+++..+.+++..+.+++.|...- +....+..+.+      ...
T Consensus       158 ~~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          158 GCEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSS
T ss_pred             cCCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCc
Confidence            3468 9999999999999999999998      98776677666666788899985321 01112333322      346


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+|+-++...   ..++...+.++++-.++..+
T Consensus       231 d~v~d~~G~~---~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          231 QLILETAGVP---QTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             EEEEECSCSH---HHHHHHHHHCCTTCEEEECC
T ss_pred             cccccccccc---chhhhhhheecCCeEEEEEe
Confidence            8888777543   24555556677777666544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.60  E-value=0.063  Score=49.95  Aligned_cols=94  Identities=18%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~------~AD  180 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +|+...+ +++..+.+++.|...- +....+..+.+.      ..|
T Consensus       167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~-~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D  238 (348)
T 2d8a_A          167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEP-SDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD  238 (348)
T ss_dssp             TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECS-CHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence            78 9999999999999999999998      98 7655444 4555667777775210 111123333332      589


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+-++...   +.+++..+.++++-.++.++.
T Consensus       239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          239 VFLEFSGAP---KALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEECSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCCH---HHHHHHHHHHhcCCEEEEEcc
Confidence            999998853   345555666777766665543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.58  E-value=0.092  Score=49.56  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc--------cC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------GS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~--------~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |...++..+.+++..+.+++.|.... +....+..+.+.        ..
T Consensus       182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~  254 (370)
T 4ej6_A          182 AG-STVAILGGGVIGLLTVQLARLA------GATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGV  254 (370)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCC
Confidence            57 9999999999999999999998      98334555555566778888886421 111224444444        37


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+|+-++...   +.+++....++++-.++.++
T Consensus       255 Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          255 DVVIECAGVA---ETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             EEEEECSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred             CEEEECCCCH---HHHHHHHHHhccCCEEEEEe
Confidence            9999988743   24555566677777666554

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=94.57  E-value=0.061  Score=51.69  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=53.4

Q ss_pred             CCEEEEEc-ccchHHHHHH-HHHhchhhhcCCc---EEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDI---VVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~-~Lr~~~~~~~~G~---~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |++|||+| .|.+|..+.+ .|.+.      ++   .+.....+. .+.........+...  ...+.++ ++++|+|+.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~   71 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT   71 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence            47999999 9999999999 45443      32   333222221 111100000111110  0113333 579999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCc--EEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNS--ILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~ga--iLid~~Gv  214 (313)
                      |+|.....++...+.+   .|+  +|+|.++.
T Consensus        72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss~  100 (367)
T 1t4b_A           72 CQGGDYTNEIYPKLRE---SGWQGYWIDAASS  100 (367)
T ss_dssp             CSCHHHHHHHHHHHHH---TTCCCEEEECSST
T ss_pred             CCCchhHHHHHHHHHH---CCCCEEEEcCChh
Confidence            9998777777776654   454  88887653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.56  E-value=0.14  Score=43.75  Aligned_cols=69  Identities=16%  Similarity=0.196  Sum_probs=46.5

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC----HHhhhccCCEEEEcc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~----~~e~i~~ADvIiLav  186 (313)
                      |+|.|+| .|.+|..+++.|.+.      |++|++..|...+....   .++........+    +.+++++.|+||.+.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a   71 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS   71 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence            5899999 899999999999998      99987777764321110   122110111223    456788999999988


Q ss_pred             cch
Q 021356          187 SDA  189 (313)
Q Consensus       187 P~~  189 (313)
                      ...
T Consensus        72 g~~   74 (219)
T 3dqp_A           72 GSG   74 (219)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.54  E-value=0.047  Score=51.94  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH-Hhhhc------cCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~------~AD  180 (313)
                      +| .+|.|+|.|.+|...++.++..      |. +|+ +.+.+++..+.+++.|...-+....+. .+.+.      ..|
T Consensus       185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D  256 (398)
T 2dph_A          185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVI-VGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD  256 (398)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEE-EEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence            57 8999999999999999999998      98 665 444445556778888862111111122 23222      589


Q ss_pred             EEEEcccchh-----------HHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a-----------~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +||-++....           ....+++....++++-.++.++
T Consensus       257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            9999987542           1235666677777777666443

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.53  E-value=0.061  Score=50.48  Aligned_cols=94  Identities=17%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhh----ccCC
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD  180 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i----~~AD  180 (313)
                      .++| ++|.|+|.|.+|...++.++..      |.+|++..+...  +..+.+++.|...-+ .. +..+.+    ...|
T Consensus       178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred             cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence            3459 9999999999999999999998      998766555430  345667777764311 11 211222    3589


Q ss_pred             EEEEcccchhHHHHH-HHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi-~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++....   .+ +...+.|+++-.++.++
T Consensus       249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          249 VIIDATGADV---NILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEEECCCCCT---HHHHHHGGGEEEEEEEEECS
T ss_pred             EEEECCCChH---HHHHHHHHHHhcCCEEEEEe
Confidence            9999887543   34 56667777766555443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.51  E-value=0.12  Score=50.74  Aligned_cols=95  Identities=14%  Similarity=0.188  Sum_probs=66.0

Q ss_pred             cccCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCC--ceecCCCcCCH
Q 021356          106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAG--FTEENGTLGDI  172 (313)
Q Consensus       106 ~~l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G--~~~~~~~~~~~  172 (313)
                      ..++| ++|+|.|+-          +-.-.+++.|.+.      |.+|.+.+..-.   +.++ ..|  +..    ..+.
T Consensus       314 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~~----~~~~  379 (450)
T 3gg2_A          314 GNVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAM---KEAQKRLGDKVEY----TTDM  379 (450)
T ss_dssp             TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCH---HHHHHHHGGGSEE----CSSH
T ss_pred             ccCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCc---HHHHHhcCcccee----cCCH
Confidence            46789 999999974          3356778888888      998766554321   2222 223  331    3578


Q ss_pred             HhhhccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEecCch
Q 021356          173 YETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      +++++++|.|+|+|.-....+ -++.+...|+ +.+|+|..++.
T Consensus       380 ~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~~  422 (450)
T 3gg2_A          380 YDAVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNVY  422 (450)
T ss_dssp             HHHTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCCC
T ss_pred             HHHhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCCC
Confidence            899999999999999877655 3456667775 56888988763

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=94.51  E-value=0.093  Score=51.70  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             cCCCCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +..+++|.|||+|-.|.+ +|+.|++.      |++|.+.+...+...+...+.|+....+.  +. +.++++|+||+.
T Consensus        16 ~~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--~~-~~~~~a~~vv~s   85 (491)
T 2f00_A           16 MRRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFNH--RP-ENVRDASVVVVS   85 (491)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESSC--CG-GGGTTCSEEEEC
T ss_pred             cccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECCC--CH-HHcCCCCEEEEC
Confidence            445589999999999998 99999998      99887665544433344456776542211  22 446789999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.51  E-value=0.21  Score=42.39  Aligned_cols=70  Identities=20%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhhccCCEEEEcccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~~e~i~~ADvIiLavP~  188 (313)
                      |+|.|+|. |.+|..+++.|.+.      |++|++..|+..+ .......++..-.....+ ..+.+.++|+||.+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            57999996 99999999999999      9998777765322 222111232210011111 11678899999998754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.50  E-value=0.08  Score=52.17  Aligned_cols=95  Identities=17%  Similarity=0.267  Sum_probs=68.6

Q ss_pred             cccCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-C-CceecCCCcCCHH
Q 021356          106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIY  173 (313)
Q Consensus       106 ~~l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~-G~~~~~~~~~~~~  173 (313)
                      ..++| ++|+|.|+-          +-...+++.|.+.      |.+|.+.+..-   .+.+++ . ++.    ...+.+
T Consensus       318 ~~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~---~~~~~~~~~~~~----~~~~~~  383 (446)
T 4a7p_A          318 GDVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEG---VEQASKMLTDVE----FVENPY  383 (446)
T ss_dssp             SCCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSC---HHHHGGGCSSCC----BCSCHH
T ss_pred             ccCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCC---CHhHHHhcCCce----EecChh
Confidence            35789 999999987          6678899999998      99876655332   223322 2 332    145788


Q ss_pred             hhhccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEecCch
Q 021356          174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       174 e~i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ++++++|+|+|++.-....+ -++.+...|+. .+|+|..++.
T Consensus       384 ~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~~  425 (446)
T 4a7p_A          384 AAADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNIY  425 (446)
T ss_dssp             HHHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCCS
T ss_pred             HHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCCC
Confidence            99999999999998777654 35567777764 6788988863

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.49  E-value=0.17  Score=42.15  Aligned_cols=70  Identities=23%  Similarity=0.307  Sum_probs=45.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~ADvIiLavP  187 (313)
                      |+|.|+|. |.+|.++++.|.+.      |++|++..|+..+... ....++........   ++.++++++|+||.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            79999997 99999999999998      9988777765332110 00112211001122   34467889999998876


Q ss_pred             c
Q 021356          188 D  188 (313)
Q Consensus       188 ~  188 (313)
                      .
T Consensus        77 ~   77 (206)
T 1hdo_A           77 T   77 (206)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=94.49  E-value=0.021  Score=54.20  Aligned_cols=68  Identities=24%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCC---HHhhhccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvI  182 (313)
                      -+.| ++|+|||.|.+|..+++.+++.      |+++++.+... ......+  .....  ....+   +.++++++|+|
T Consensus        11 ~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvI   79 (389)
T 3q2o_A           11 ILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDVV   79 (389)
T ss_dssp             CCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSEE
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCEe
Confidence            4688 9999999999999999999999      99987665432 1111111  11111  11223   45778889998


Q ss_pred             EEc
Q 021356          183 LLL  185 (313)
Q Consensus       183 iLa  185 (313)
                      ...
T Consensus        80 ~~~   82 (389)
T 3q2o_A           80 TYE   82 (389)
T ss_dssp             EES
T ss_pred             eec
Confidence            654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.47  E-value=0.19  Score=49.29  Aligned_cols=80  Identities=14%  Similarity=0.086  Sum_probs=53.5

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .-+|+| ++|.|||.|..|.+-++.|.+.      |.+|.+....-.+..+...+ .++....+.. . ++-+.++|+||
T Consensus         7 ~~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~-~-~~~l~~~~lVi   77 (457)
T 1pjq_A            7 FCQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGPF-D-ETLLDSCWLAI   77 (457)
T ss_dssp             EECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESSC-C-GGGGTTCSEEE
T ss_pred             EEECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECCC-C-ccccCCccEEE
Confidence            357899 9999999999999999999999      99887776543332222222 2332111111 2 34567999999


Q ss_pred             EcccchhHHH
Q 021356          184 LLISDAAQAD  193 (313)
Q Consensus       184 LavP~~a~~~  193 (313)
                      .++.+.....
T Consensus        78 ~at~~~~~n~   87 (457)
T 1pjq_A           78 AATDDDTVNQ   87 (457)
T ss_dssp             ECCSCHHHHH
T ss_pred             EcCCCHHHHH
Confidence            9887765433

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=94.47  E-value=0.088  Score=49.65  Aligned_cols=70  Identities=21%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHH----HHHHCC--ceecCCCcCCHH
Q 021356          106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAG--FTEENGTLGDIY  173 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~----~A~~~G--~~~~~~~~~~~~  173 (313)
                      ..|+| .+|++||=|  ++..|++..+...      |+++.+...++-    ...+    .+.+.|  +..    ..+++
T Consensus       144 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~  212 (307)
T 2i6u_A          144 GALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAH  212 (307)
T ss_dssp             SCCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred             CCcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHH
Confidence            46889 999999985  9999999999999      999877765431    1112    223556  332    46899


Q ss_pred             hhhccCCEEEEcc
Q 021356          174 ETISGSDLVLLLI  186 (313)
Q Consensus       174 e~i~~ADvIiLav  186 (313)
                      |+++++|+|..-+
T Consensus       213 eav~~aDvvy~~~  225 (307)
T 2i6u_A          213 AAAAGADVLVTDT  225 (307)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HHhcCCCEEEecc
Confidence            9999999999854

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=94.43  E-value=0.084  Score=52.02  Aligned_cols=87  Identities=16%  Similarity=0.183  Sum_probs=63.7

Q ss_pred             CEEEEEccc----chHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWG----SQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G----~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|||.+    .+|..+.++|++.      | ..| +...+....     -.|...    +.++.|+-...|++++++
T Consensus         9 ~siAVvGas~~~~~~g~~v~~~l~~~------g~~~v-~pVnP~~~~-----i~G~~~----y~sl~~lp~~~Dlavi~v   72 (457)
T 2csu_A            9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKV-YPVNIKEEE-----VQGVKA----YKSVKDIPDEIDLAIIVV   72 (457)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEE-EEECSSCSE-----ETTEEC----BSSTTSCSSCCSEEEECS
T ss_pred             CeEEEECcCCCCCchHHHHHHHHHHc------CCCEE-EEECCCCCe-----ECCEec----cCCHHHcCCCCCEEEEec
Confidence            899999998    7899999999887      5 344 444443221     146553    457778777899999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |+....+++++..+. .-..+|+...|+.
T Consensus        73 p~~~~~~~v~e~~~~-Gi~~vv~~s~G~~  100 (457)
T 2csu_A           73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG  100 (457)
T ss_dssp             CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred             CHHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence            999999999876654 2345677888873

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.41  E-value=0.12  Score=49.58  Aligned_cols=99  Identities=15%  Similarity=0.056  Sum_probs=55.5

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec-C-CcccHHHHHHC----Cc----e--------ecC--
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARAA----GF----T--------EEN--  166 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~-~~~s~~~A~~~----G~----~--------~~~--  166 (313)
                      ....+.+|||+|+|.+|.-+.+.|.+.     .+++++...+ . +........+.    |.    +        ..+  
T Consensus        13 ~~~~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~   87 (354)
T 3cps_A           13 NLYFQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKV   87 (354)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEE
T ss_pred             CcCcceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeE
Confidence            334446999999999999999998764     2567655554 2 22111121111    10    0        000  


Q ss_pred             ---CCcCCHHhhh---ccCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          167 ---GTLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       167 ---~~~~~~~e~i---~~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                         ....+++++-   .++|+|+.++|.....+...   .+++.|+  +|+|.++
T Consensus        88 i~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa  139 (354)
T 3cps_A           88 VKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP  139 (354)
T ss_dssp             EEEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred             EEEEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence               0011333331   47999999999876655544   4456677  8887764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.39  E-value=0.089  Score=49.85  Aligned_cols=97  Identities=22%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhh------ccCCE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~i------~~ADv  181 (313)
                      +| .+|.|+|.|.+|...++.++..      |...+++.+.+++..+.+++.|...-+... .+..+.+      ...|+
T Consensus       185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv  257 (398)
T 1kol_A          185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC  257 (398)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence            57 9999999999999999999998      984345555555667788888863111111 1123322      25799


Q ss_pred             EEEcccchh------------HHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAA------------QADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a------------~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++....            ....+++....++++-.++.++
T Consensus       258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            999987542            1125666667777776665544

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=94.36  E-value=0.11  Score=49.27  Aligned_cols=70  Identities=16%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHH----HHCC--ceecCCCcCCHHh
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEA----RAAG--FTEENGTLGDIYE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A----~~~G--~~~~~~~~~~~~e  174 (313)
                      ..|+| .+|++||=| ++..|++..+...      |+++.+...++-    ...+.+    .+.|  +..    ..+++|
T Consensus       151 g~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e  219 (321)
T 1oth_A          151 SSLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLE  219 (321)
T ss_dssp             SCCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred             CCcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence            46889 999999976 4888888887777      999877765432    112222    2344  332    468999


Q ss_pred             hhccCCEEEEcc
Q 021356          175 TISGSDLVLLLI  186 (313)
Q Consensus       175 ~i~~ADvIiLav  186 (313)
                      +++++|+|..-+
T Consensus       220 av~~aDvvy~d~  231 (321)
T 1oth_A          220 AAHGGNVLITDT  231 (321)
T ss_dssp             HHTTCSEEEECC
T ss_pred             HhccCCEEEEec
Confidence            999999999955

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.33  E-value=0.15  Score=45.55  Aligned_cols=81  Identities=23%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCccc--HHHH------HHCCceecCCCcCC---HHhhhccC
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISGS  179 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A------~~~G~~~~~~~~~~---~~e~i~~A  179 (313)
                      ++|.|+|. |.+|.++++.|.+.      |++|++..|.....  .+.+      ...|+........+   +.++++++
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            78999995 99999999999998      98887766653221  1111      12344211112223   45678899


Q ss_pred             CEEEEcccchh---HHHHHHHH
Q 021356          180 DLVLLLISDAA---QADNYEKI  198 (313)
Q Consensus       180 DvIiLavP~~a---~~~vi~ei  198 (313)
                      |+||.+.....   +..+++..
T Consensus        79 d~vi~~a~~~~~~~~~~l~~aa  100 (308)
T 1qyc_A           79 DVVISTVGSLQIESQVNIIKAI  100 (308)
T ss_dssp             SEEEECCCGGGSGGGHHHHHHH
T ss_pred             CEEEECCcchhhhhHHHHHHHH
Confidence            99999887542   33455543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.29  E-value=0.088  Score=49.42  Aligned_cols=94  Identities=12%  Similarity=0.099  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV  182 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~ADvI  182 (313)
                      +| .+|.|+|.|.+|...++.++..      |...+++.+.+++..+.+++.|...- +....+..+.+.     ..|+|
T Consensus       190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v  262 (371)
T 1f8f_A          190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA  262 (371)
T ss_dssp             TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence            57 8999999999999999999998      88433455444555677777775310 111123333332     47999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +-++...   +.+++....++++-.++.++
T Consensus       263 id~~g~~---~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          263 LESTGSP---EILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EECSCCH---HHHHHHHHTEEEEEEEEECC
T ss_pred             EECCCCH---HHHHHHHHHHhcCCEEEEeC
Confidence            9888753   34556667777776666544

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.27  E-value=0.22  Score=44.81  Aligned_cols=75  Identities=21%  Similarity=0.167  Sum_probs=47.9

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH------CCce---ecCC-CcCCHHh
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFT---EENG-TLGDIYE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~------~G~~---~~~~-~~~~~~e  174 (313)
                      ..++| |+|.|.|. |-+|..+++.|.+.      |++|++..|...........      .++.   ..|- ....+++
T Consensus         7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~   79 (342)
T 1y1p_A            7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE   79 (342)
T ss_dssp             SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred             cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence            45678 99999996 99999999999998      99887766653221111110      1221   1010 1123456


Q ss_pred             hhccCCEEEEccc
Q 021356          175 TISGSDLVLLLIS  187 (313)
Q Consensus       175 ~i~~ADvIiLavP  187 (313)
                      ++++.|+||-+..
T Consensus        80 ~~~~~d~vih~A~   92 (342)
T 1y1p_A           80 VIKGAAGVAHIAS   92 (342)
T ss_dssp             TTTTCSEEEECCC
T ss_pred             HHcCCCEEEEeCC
Confidence            7778999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.21  E-value=0.096  Score=52.14  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-H-HhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-I-YETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~-~e~i~~ADvIiLavP~~  189 (313)
                      +++.|||+|.+|..+|+.|.+.      |+++++.+..... .+...  -+...|.+-.+ + +.-+++||.++.+++++
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~-~~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d  419 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESP-VCNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD  419 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCS-SCCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHH-HhhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence            6799999999999999999999      9987766654332 22111  23322211111 1 12468999999999987


Q ss_pred             hHHHHHHHHHhcCCCC-cEEEEe
Q 021356          190 AQADNYEKIFSCMKPN-SILGLS  211 (313)
Q Consensus       190 a~~~vi~ei~~~mk~g-aiLid~  211 (313)
                      ...-++...+..+.+. .++.-+
T Consensus       420 ~~ni~~~~~ak~l~~~~~iiar~  442 (565)
T 4gx0_A          420 STNIFLTLACRHLHSHIRIVARA  442 (565)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             hHHHHHHHHHHHHCCCCEEEEEE
Confidence            5444444555556665 455433

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.11  E-value=0.15  Score=47.06  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc----cCCEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLV  182 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~----~ADvI  182 (313)
                      -+| .+|.|+|.|.+|...++.++..      |.+|+.. +.+++..+.+++.|...- +....+..+.+.    ..|+|
T Consensus       165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          165 RPG-QWVVISGIGGLGHVAVQYARAM------GLRVAAV-DIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CTT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEE-eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence            367 9999999999999999999998      9986544 444566678888885310 111123333333    57999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +.++...   +.++.....++++-.++..+
T Consensus       237 id~~g~~---~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          237 LVTAVSP---KAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EESSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred             EEeCCCH---HHHHHHHHHhccCCEEEEeC
Confidence            9887643   34556666777777666554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.09  E-value=0.21  Score=45.10  Aligned_cols=81  Identities=20%  Similarity=0.141  Sum_probs=52.5

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH---HHHCCceecCCCcC---CHHhhhccCCEEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLG---DIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~---A~~~G~~~~~~~~~---~~~e~i~~ADvIiL  184 (313)
                      ++|.|+| .|.+|.++++.|.+.      |++|++..|+.....+.   ....|+........   ++.++++++|+||.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            5899999 599999999999998      98887777764322211   12345421111222   34568889999999


Q ss_pred             cccch---hHHHHHHHH
Q 021356          185 LISDA---AQADNYEKI  198 (313)
Q Consensus       185 avP~~---a~~~vi~ei  198 (313)
                      +....   ....+++..
T Consensus        86 ~a~~~~~~~~~~l~~aa  102 (318)
T 2r6j_A           86 ALAFPQILDQFKILEAI  102 (318)
T ss_dssp             CCCGGGSTTHHHHHHHH
T ss_pred             CCchhhhHHHHHHHHHH
Confidence            88753   233455543

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=94.03  E-value=0.04  Score=52.17  Aligned_cols=93  Identities=11%  Similarity=-0.003  Sum_probs=55.1

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcccch
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~~ADvIiLavP~~  189 (313)
                      ++|+|+| .|.+|..+.+.|.+.-   -..++++...+..+...... -.|...   ...+. .+.+.++|+|++|+|..
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~---~p~~elv~i~s~~~~G~~~~-~~~~~i---~~~~~~~~~~~~vDvVf~a~g~~   76 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQERE---FPVDELFLLASERSEGKTYR-FNGKTV---RVQNVEEFDWSQVHIALFSAGGE   76 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTT---CCEEEEEEEECTTTTTCEEE-ETTEEE---EEEEGGGCCGGGCSEEEECSCHH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCC---CCCEEEEEEECCCCCCCcee-ecCcee---EEecCChHHhcCCCEEEECCCch
Confidence            7899999 9999999999887640   01335544443211100000 001100   01111 23457899999999988


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ...+..+.+.   +.|+.++|.++.
T Consensus        77 ~s~~~a~~~~---~~G~~vId~s~~   98 (336)
T 2r00_A           77 LSAKWAPIAA---EAGVVVIDNTSH   98 (336)
T ss_dssp             HHHHHHHHHH---HTTCEEEECSST
T ss_pred             HHHHHHHHHH---HcCCEEEEcCCc
Confidence            7777776554   458888887764

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=94.02  E-value=0.14  Score=49.61  Aligned_cols=90  Identities=14%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEE-EE-ecC-CcccHHHH-------------HHCCceecCCCcCCHHh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VG-LRK-GSRSFAEA-------------RAAGFTEENGTLGDIYE  174 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vi-vg-~r~-~~~s~~~A-------------~~~G~~~~~~~~~~~~e  174 (313)
                      ++||||| .|..|..+.+.|.+.     +..++. +. .++ .-+.....             .+.-+.+     .+.++
T Consensus        20 ~kVaIvGAtG~vG~ell~lL~~h-----p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~~   89 (381)
T 3hsk_A           20 KKAGVLGATGSVGQRFILLLSKH-----PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPEG   89 (381)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSCT
T ss_pred             cEEEEECCCChHHHHHHHHHHcC-----CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchhh
Confidence            6899999 699999999988765     123543 22 222 11222211             1111111     12221


Q ss_pred             hhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .++++|+||+|+|.....++..++.   +.|..|+|.++-
T Consensus        90 ~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa~  126 (381)
T 3hsk_A           90 NFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAKN  126 (381)
T ss_dssp             TGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred             hcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCCc
Confidence            4689999999999988877777664   358889988763

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=94.01  E-value=0.26  Score=47.06  Aligned_cols=105  Identities=12%  Similarity=0.132  Sum_probs=54.6

Q ss_pred             ccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCC--cEEEEEecCCccc---HHHHHH--C-C--ceecCCCcCCHH
Q 021356          105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS---FAEARA--A-G--FTEENGTLGDIY  173 (313)
Q Consensus       105 ~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G--~~Vivg~r~~~~s---~~~A~~--~-G--~~~~~~~~~~~~  173 (313)
                      +..... -||+|||. |.+|.+++..|... +=.+.+  .++.+ +|..+..   .-.+.+  . .  .........+..
T Consensus        19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L-~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~   95 (345)
T 4h7p_A           19 PGSMSA-VKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRL-LDIEPALKALAGVEAELEDCAFPLLDKVVVTADPR   95 (345)
T ss_dssp             ---CCC-EEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEE-ECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHH
T ss_pred             CCCCCC-CEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEE-ECCCCccccchhhhhhhhhcCccCCCcEEEcCChH
Confidence            355566 79999996 99999999988775 000111  13433 3432211   111111  1 1  100001134678


Q ss_pred             hhhccCCEEEEcc--c--chhHH-HHH-----------HHHHhcCCCCcEEEEec
Q 021356          174 ETISGSDLVLLLI--S--DAAQA-DNY-----------EKIFSCMKPNSILGLSH  212 (313)
Q Consensus       174 e~i~~ADvIiLav--P--~~a~~-~vi-----------~ei~~~mk~gaiLid~~  212 (313)
                      +.+++||+||++-  |  |...+ +++           +.+.++-.|+++|+.++
T Consensus        96 ~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs  150 (345)
T 4h7p_A           96 VAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG  150 (345)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence            8999999999965  2  22221 122           23444556788776554

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=93.98  E-value=0.17  Score=48.41  Aligned_cols=70  Identities=10%  Similarity=0.034  Sum_probs=48.8

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhhc
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS  177 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~i~  177 (313)
                      .|+| .||++|| .+++..|++..+...      |+++.+...++    +...+.    +.+.|...+  ...+++ +++
T Consensus       172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~  241 (339)
T 4a8t_A          172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE  241 (339)
T ss_dssp             CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred             CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence            6888 9999999 568999999999988      99987765442    122222    334453210  145788 999


Q ss_pred             cCCEEEEcc
Q 021356          178 GSDLVLLLI  186 (313)
Q Consensus       178 ~ADvIiLav  186 (313)
                      ++|+|..-+
T Consensus       242 ~aDvvytd~  250 (339)
T 4a8t_A          242 GADFLYTDV  250 (339)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEecC
Confidence            999999743

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.97  E-value=0.071  Score=52.10  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------c--cc--HHHHHHCCceecCCCcCCHH
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------S--RS--FAEARAAGFTEENGTLGDIY  173 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------~--~s--~~~A~~~G~~~~~~~~~~~~  173 (313)
                      +.++. .+|.|+|.|.-|.++|+.+...      |. +|++.++++       .  ..  ...+.+...   .....+++
T Consensus       184 ~~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~  253 (398)
T 2a9f_A          184 KSLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLE  253 (398)
T ss_dssp             CCTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCS
T ss_pred             CCCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHH
Confidence            35666 8999999999999999999998      88 777776652       1  11  122222110   01134789


Q ss_pred             hhhccCCEEEEcccchhHHHHH-HHHHhcCCCCcEEEEecCc
Q 021356          174 ETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       174 e~i~~ADvIiLavP~~a~~~vi-~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+++++|++|=+..|    .++ +++...|+++.||.+++--
T Consensus       254 eav~~ADV~IG~Sap----gl~T~EmVk~Ma~~pIIfalsNP  291 (398)
T 2a9f_A          254 DALEGADIFIGVSAP----GVLKAEWISKMAARPVIFAMANP  291 (398)
T ss_dssp             HHHHTTCSEEECCST----TCCCHHHHHTSCSSCEEEECCSS
T ss_pred             HHhccCCEEEecCCC----CCCCHHHHHhhCCCCEEEECCCC
Confidence            999999998776543    444 3677789999999987643

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.97  E-value=0.23  Score=46.66  Aligned_cols=94  Identities=13%  Similarity=0.032  Sum_probs=59.6

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhh-hccCCEE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYET-ISGSDLV  182 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~-i~~ADvI  182 (313)
                      -+| ++|..||+|..|.+.....+..      |.+| ++.+.++...+.|++.    |...-.-...+..++ -...|+|
T Consensus       121 ~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V-~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV  192 (298)
T 3fpf_A          121 RRG-ERAVFIGGGPLPLTGILLSHVY------GMRV-NVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVL  192 (298)
T ss_dssp             CTT-CEEEEECCCSSCHHHHHHHHTT------CCEE-EEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEE
T ss_pred             CCc-CEEEEECCCccHHHHHHHHHcc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEE
Confidence            356 9999999999765544333434      6664 6777777666666543    430000001233332 2468999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      ++..-.....++++++...||||-.|+
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPGG~Lv  219 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTETRII  219 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred             EECCCccCHHHHHHHHHHHcCCCcEEE
Confidence            987654455679999999999998765

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.90  E-value=0.15  Score=47.45  Aligned_cols=92  Identities=18%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh------ccCCE
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i------~~ADv  181 (313)
                      +| .+|.|+| .|.+|...++.++..      |.+|+.. ++ ++..+.+++.|...-+ ...+..+.+      ...|+
T Consensus       150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~  219 (343)
T 3gaz_A          150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL  219 (343)
T ss_dssp             TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred             CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence            57 9999999 799999999999998      9987655 43 4456677777764311 122333333      26899


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+-++..    +.++.....++++-.++.+++.
T Consensus       220 vid~~g~----~~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          220 VYDTLGG----PVLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             EEESSCT----HHHHHHHHHEEEEEEEEESCCC
T ss_pred             EEECCCc----HHHHHHHHHHhcCCeEEEEccc
Confidence            9998875    3455566677777766665543

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=93.90  E-value=0.098  Score=49.38  Aligned_cols=73  Identities=18%  Similarity=0.184  Sum_probs=54.1

Q ss_pred             cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~  178 (313)
                      ..|+| .+|++||=   |++..|++..+...      |+++.+...++    +...+.+++.|...+  ...+++|++++
T Consensus       151 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~  221 (308)
T 1ml4_A          151 GRIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGK  221 (308)
T ss_dssp             SCSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTT
T ss_pred             CCCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence            46888 99999997   48999999999999      99987775432    223355566664210  14588999999


Q ss_pred             CCEEEEccc
Q 021356          179 SDLVLLLIS  187 (313)
Q Consensus       179 ADvIiLavP  187 (313)
                      +|+|....=
T Consensus       222 aDvvyt~~~  230 (308)
T 1ml4_A          222 LDVLYVTRI  230 (308)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCc
Confidence            999998663

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=93.80  E-value=0.15  Score=48.64  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc---EEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++|+||| .|..|.-+.+.|...      .+   ++.......+  +...   -.|  ...+   ..+ ++.++++|+|+
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~---~~~~~~~~~---~~~-~~~~~~~Dvvf   68 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLA---FRGQEIEVE---DAE-TADPSGLDIAL   68 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEE---ETTEEEEEE---ETT-TSCCTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCcee---ecCCceEEE---eCC-HHHhccCCEEE
Confidence            7899999 799999999988775      32   3333222111  1000   001  1110   011 23467999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+|.....++.+.+.   +.|+.|+|.++
T Consensus        69 ~a~~~~~s~~~a~~~~---~~G~~vID~Sa   95 (344)
T 3tz6_A           69 FSAGSAMSKVQAPRFA---AAGVTVIDNSS   95 (344)
T ss_dssp             ECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred             ECCChHHHHHHHHHHH---hCCCEEEECCC
Confidence            9999888777777664   35888998876

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=93.74  E-value=0.022  Score=55.59  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=57.9

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      .++.|||. |..|..-++.++..      |.   +|.+.+.+.       ...|-.        . +.++++|+||-++.
T Consensus       215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~--------~-~~i~~aDivIn~vl  272 (394)
T 2qrj_A          215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP--------F-DEIPQADIFINCIY  272 (394)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC--------C-THHHHSSEEEECCC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc--------h-hhHhhCCEEEECcC
Confidence            57899999 99999999999998      87   676654421       011221        1 34679999999999


Q ss_pred             chhH-HHHHH-HHHhcC-CCCcEEEEec
Q 021356          188 DAAQ-ADNYE-KIFSCM-KPNSILGLSH  212 (313)
Q Consensus       188 ~~a~-~~vi~-ei~~~m-k~gaiLid~~  212 (313)
                      ...- ..++. +..+.| |||++|+|++
T Consensus       273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            6332 24554 777889 9999999985

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.73  E-value=0.074  Score=48.92  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH------HHCCceecCCCcCC---HHhhhc-
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA------RAAGFTEENGTLGD---IYETIS-  177 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A------~~~G~~~~~~~~~~---~~e~i~-  177 (313)
                      .. |+|.|+|. |.+|..+++.|.+.      |++|++..|........+      ...++........+   +.++++ 
T Consensus         9 ~~-~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~   81 (346)
T 3i6i_A            9 PK-GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE   81 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred             CC-CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence            35 79999997 99999999999998      988887777642211111      12343221122333   446778 


Q ss_pred             -cCCEEEEcccchh---HHHHHHHH
Q 021356          178 -GSDLVLLLISDAA---QADNYEKI  198 (313)
Q Consensus       178 -~ADvIiLavP~~a---~~~vi~ei  198 (313)
                       ++|+||.+.....   +..+++..
T Consensus        82 ~~~d~Vi~~a~~~n~~~~~~l~~aa  106 (346)
T 3i6i_A           82 HEIDIVVSTVGGESILDQIALVKAM  106 (346)
T ss_dssp             TTCCEEEECCCGGGGGGHHHHHHHH
T ss_pred             CCCCEEEECCchhhHHHHHHHHHHH
Confidence             9999999887643   23355543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.70  E-value=0.28  Score=45.39  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh----ccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i----~~ADvIi  183 (313)
                      +| ++|.|+|.|.+|...++.++..      |.+|+. ...+++..+.+++.|...- +....+..+.+    ...|+|+
T Consensus       164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~-~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi  235 (339)
T 1rjw_A          164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVA-VDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV  235 (339)
T ss_dssp             TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEE-ECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEE-EeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence            57 9999999999999999999998      987654 4444555667777775310 11111333322    4689999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      -++....   .+++..+.++++-.++..+
T Consensus       236 d~~g~~~---~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          236 VTAVSKP---AFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             ESSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred             ECCCCHH---HHHHHHHHhhcCCEEEEec
Confidence            9887532   4555566677766665544

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.66  E-value=0.18  Score=42.66  Aligned_cols=93  Identities=13%  Similarity=0.082  Sum_probs=59.8

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~AD  180 (313)
                      +| +++.|+| .|-+|.++++.++..      |.+|+...++ ++..+.+++.|.... +....+..+.+      ...|
T Consensus        38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence            57 9999999 699999999999998      9887655543 444455666664210 11111222222      2479


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+-++..    +.+++..+.|+++-.++..+.
T Consensus       110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred             EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence            99888753    345666777888777766554

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=93.63  E-value=0.052  Score=51.49  Aligned_cols=92  Identities=16%  Similarity=0.089  Sum_probs=53.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcccch
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~~ADvIiLavP~~  189 (313)
                      ++|+|+| .|.+|..+.+.|.+.   ....++++...+......... -.|...   ...+. .+.+.++|+|++++|..
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~---~~~~~elv~i~s~~~~g~~~~-~~g~~i---~~~~~~~~~~~~~DvV~~a~g~~   79 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDER---DFPLHRLHLLASAESAGQRMG-FAESSL---RVGDVDSFDFSSVGLAFFAAAAE   79 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT---TCCCSCEEEEECTTTTTCEEE-ETTEEE---ECEEGGGCCGGGCSEEEECSCHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC---CCCcEEEEEEecCCCCCCccc-cCCcce---EEecCCHHHhcCCCEEEEcCCcH
Confidence            6899999 899999999998754   001234443332211100000 011110   01111 12367899999999988


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecC
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ...++.+...+   .|+.++|.++
T Consensus        80 ~s~~~a~~~~~---aG~kvId~Sa  100 (340)
T 2hjs_A           80 VSRAHAERARA---AGCSVIDLSG  100 (340)
T ss_dssp             HHHHHHHHHHH---TTCEEEETTC
T ss_pred             HHHHHHHHHHH---CCCEEEEeCC
Confidence            77666665543   4777887765

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.63  E-value=0.14  Score=51.02  Aligned_cols=92  Identities=12%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             ccCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i  176 (313)
                      .++| ++|+|.|+-          +-...+++.|++.      |.+|.+.+..-.. .     .++.    ...++++++
T Consensus       350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~----~~~~~~~~~  412 (478)
T 3g79_A          350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVE----ISDNLEEVV  412 (478)
T ss_dssp             CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBC----EESCHHHHH
T ss_pred             CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcc----eecCHHHHH
Confidence            5789 999999973          2356788888888      9987665543221 0     1111    124789999


Q ss_pred             ccCCEEEEcccchhHHH-HHHHHHhcCC-CCcEEEEecCch
Q 021356          177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGFL  215 (313)
Q Consensus       177 ~~ADvIiLavP~~a~~~-vi~ei~~~mk-~gaiLid~~Gv~  215 (313)
                      +++|+|++++.-....+ -++.+...|+ +..+|+|..++.
T Consensus       413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~~  453 (478)
T 3g79_A          413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVI  453 (478)
T ss_dssp             TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSCS
T ss_pred             hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCCC
Confidence            99999999999887765 3567777787 478999998874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.62  E-value=0.11  Score=49.12  Aligned_cols=92  Identities=17%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa  185 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|+... .+++..+.+++.|...- -...+   .+++....|+|+-+
T Consensus       194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~-~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~g~Dvvid~  264 (369)
T 1uuf_A          194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFT-TSEAKREAAKALGADEV-VNSRNADEMAAHLKSFDFILNT  264 (369)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SSGGGHHHHHHHTCSEE-EETTCHHHHHTTTTCEEEEEEC
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe-CCHHHHHHHHHcCCcEE-eccccHHHHHHhhcCCCEEEEC
Confidence            57 8999999999999999999998      98865444 44555677777775310 00112   12233568999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +....   .+++..+.++++-.++..+
T Consensus       265 ~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          265 VAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             CCCHH---HHHHHHHHhccCCEEEEec
Confidence            87542   2445566777776666554

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=93.58  E-value=0.04  Score=52.29  Aligned_cols=67  Identities=22%  Similarity=0.190  Sum_probs=43.5

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCC---HHhhhccCCEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLV  182 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvI  182 (313)
                      .+.| ++|+|||.|.+|..+++.+++.      |+++++.+... ......+  ..+..  ....+   +.++++++|+|
T Consensus         9 ~~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~~~~p~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvi   77 (377)
T 3orq_A            9 LKFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPSEDCPCRYVA--HEFIQ--AKYDDEKALNQLGQKCDVI   77 (377)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCTTCTTGGGS--SEEEE--CCTTCHHHHHHHHHHCSEE
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCChhhhhC--CEEEE--CCCCCHHHHHHHHHhCCcc
Confidence            3567 9999999999999999999999      99877665432 1111111  11221  01122   44567789988


Q ss_pred             EE
Q 021356          183 LL  184 (313)
Q Consensus       183 iL  184 (313)
                      +.
T Consensus        78 ~~   79 (377)
T 3orq_A           78 TY   79 (377)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=93.58  E-value=0.48  Score=39.97  Aligned_cols=92  Identities=14%  Similarity=0.053  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----Cc---eecCCCcCCHHh---hhcc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYE---TISG  178 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~---~~~~~~~~~~~e---~i~~  178 (313)
                      +| .+|.-||+|. |. ++..+.+.    +.+.+ +++.+.++...+.+++.    |+   ...   ..+..+   ....
T Consensus        40 ~~-~~vLDiG~G~-G~-~~~~la~~----~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~  108 (204)
T 3e05_A           40 DD-LVMWDIGAGS-AS-VSIEASNL----MPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLPD  108 (204)
T ss_dssp             TT-CEEEEETCTT-CH-HHHHHHHH----CTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSCC
T ss_pred             CC-CEEEEECCCC-CH-HHHHHHHH----CCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCCC
Confidence            57 8999999997 43 44444443    11245 46777766655555442    22   110   122222   2357


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      .|+|++..+.....++++++...||||-.++..
T Consensus       109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  141 (204)
T 3e05_A          109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN  141 (204)
T ss_dssp             CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence            899999887776778999999999998876643

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.55  E-value=0.11  Score=44.49  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=46.6

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEEcc
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~ADvIiLav  186 (313)
                      +|+|.|+| .|.+|..+++.|.+.      |++|++..|...+....  ..++........   ++.++++++|+||.+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence            48999999 699999999999999      99887776653321110  012211011122   3456888999999987


Q ss_pred             cch
Q 021356          187 SDA  189 (313)
Q Consensus       187 P~~  189 (313)
                      .+.
T Consensus        76 ~~~   78 (227)
T 3dhn_A           76 NPG   78 (227)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            654

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=93.54  E-value=0.17  Score=48.95  Aligned_cols=71  Identities=13%  Similarity=0.030  Sum_probs=50.2

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC------cccHH----HHHHCCceecCCCcCCHHh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIYE  174 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~------~~s~~----~A~~~G~~~~~~~~~~~~e  174 (313)
                      .|+| .+|++||=+  +++.|++..+...      |+++.+...++      +...+    .+.+.|...+  ...+++|
T Consensus       177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e  247 (365)
T 4amu_A          177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL  247 (365)
T ss_dssp             SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred             CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence            4889 999999987  7899999999888      99987765432      11112    2344552210  1468999


Q ss_pred             hhccCCEEEEcc
Q 021356          175 TISGSDLVLLLI  186 (313)
Q Consensus       175 ~i~~ADvIiLav  186 (313)
                      ++++||+|..-+
T Consensus       248 av~~aDVVytd~  259 (365)
T 4amu_A          248 AAQDADVIYTDV  259 (365)
T ss_dssp             HTTTCSEEEECC
T ss_pred             HhcCCCEEEecc
Confidence            999999999843

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=93.50  E-value=0.2  Score=47.61  Aligned_cols=70  Identities=16%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCC--ceecCCCcCCHHh
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~~~~~~~~~e  174 (313)
                      ..|+| .||++|| .+++..|++..+...      |+++.+...++    +...+.    +.+.|  +..    ..+++|
T Consensus       153 g~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~e  221 (323)
T 3gd5_A          153 GRLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFE  221 (323)
T ss_dssp             SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred             CCCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHH
Confidence            45889 9999999 568999999999888      99887765432    122222    23345  332    468999


Q ss_pred             hhccCCEEEEcc
Q 021356          175 TISGSDLVLLLI  186 (313)
Q Consensus       175 ~i~~ADvIiLav  186 (313)
                      +++++|+|..-+
T Consensus       222 av~~aDvvyt~~  233 (323)
T 3gd5_A          222 AARGAHILYTDV  233 (323)
T ss_dssp             HHTTCSEEEECC
T ss_pred             HhcCCCEEEEec
Confidence            999999998875

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.48  E-value=0.15  Score=45.57  Aligned_cols=38  Identities=16%  Similarity=0.096  Sum_probs=32.9

Q ss_pred             cccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .+|+| |++-|-|.+   =||.++|+.|.+.      |.+|++..|+.
T Consensus         2 ~~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~   42 (256)
T 4fs3_A            2 LNLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKE   42 (256)
T ss_dssp             CCCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSG
T ss_pred             cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence            57899 999999975   4999999999999      99988887764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.45  E-value=0.27  Score=44.37  Aligned_cols=81  Identities=17%  Similarity=0.128  Sum_probs=51.9

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC-c----ccHHH---HHHCCceecCCCcC---CHHhhhccC
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLG---DIYETISGS  179 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~----~s~~~---A~~~G~~~~~~~~~---~~~e~i~~A  179 (313)
                      |+|.|+| .|.+|.++++.|.+.      |++|++..|+. .    ...+.   ....|+........   ++.++++++
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~   78 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQV   78 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred             cEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCC
Confidence            7899999 599999999999998      98887777764 1    11111   12334321111222   345688899


Q ss_pred             CEEEEcccch---hHHHHHHHH
Q 021356          180 DLVLLLISDA---AQADNYEKI  198 (313)
Q Consensus       180 DvIiLavP~~---a~~~vi~ei  198 (313)
                      |+||.+....   ....+++..
T Consensus        79 d~vi~~a~~~~~~~~~~l~~aa  100 (321)
T 3c1o_A           79 DIVISALPFPMISSQIHIINAI  100 (321)
T ss_dssp             SEEEECCCGGGSGGGHHHHHHH
T ss_pred             CEEEECCCccchhhHHHHHHHH
Confidence            9999987653   234455543

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=93.43  E-value=0.2  Score=50.11  Aligned_cols=93  Identities=16%  Similarity=0.156  Sum_probs=58.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc---EEEEEecCCcccHHHHHHCCcee--cCCCcCC----HHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTE--ENGTLGD----IYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~~----~~e~i~~ADvI  182 (313)
                      ++|.|||+|.||..++..|.+.     .++   +|++.+..... .+.....|+..  ..-+..+    +.+++++.|+|
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~-----~dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV   87 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEK-----FDIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL   87 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-----BCCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhC-----CCCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence            5799999999999999998775     144   46666543221 12233335321  1111122    23466677999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      |-+.++.....+++....   .|...+|++.
T Consensus        88 IN~s~~~~~l~Im~acle---aGv~YlDTa~  115 (480)
T 2ph5_A           88 IDVSIGISSLALIILCNQ---KGALYINAAT  115 (480)
T ss_dssp             EECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred             EECCccccCHHHHHHHHH---cCCCEEECCC
Confidence            999999877777775443   4778888874

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=93.42  E-value=0.19  Score=47.81  Aligned_cols=70  Identities=14%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCcc------cHHHH----HH--CCceecCCCcCCH
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEA----RA--AGFTEENGTLGDI  172 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~------s~~~A----~~--~G~~~~~~~~~~~  172 (313)
                      .|+| .+|++||=+  ++..|++..+...      |+++.+...++-.      ..+.+    .+  .|...+  ...++
T Consensus       158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~--~~~d~  228 (328)
T 3grf_A          158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIK--IFHDC  228 (328)
T ss_dssp             TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEE--EESSH
T ss_pred             ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEE--EEcCH
Confidence            6889 999999965  8899999999988      9998776544322      22222    23  453210  14689


Q ss_pred             HhhhccCCEEEEc
Q 021356          173 YETISGSDLVLLL  185 (313)
Q Consensus       173 ~e~i~~ADvIiLa  185 (313)
                      +|+++++|+|..-
T Consensus       229 ~eav~~aDvvytd  241 (328)
T 3grf_A          229 KKGCEGVDVVYTD  241 (328)
T ss_dssp             HHHHTTCSEEEEC
T ss_pred             HHHhcCCCEEEec
Confidence            9999999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.37  E-value=0.092  Score=49.40  Aligned_cols=92  Identities=20%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhhccCCEEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~e~i~~ADvIiL  184 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|++..+. ++..+.+. +.|...- -...+   ..++....|+|+-
T Consensus       187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~lGa~~v-~~~~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTS-PSKKEEALKNFGADSF-LVSRDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-GGGHHHHHHTSCCSEE-EETTCHHHHHHTTTCEEEEEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhcCCceE-EeccCHHHHHHhhCCCCEEEE
Confidence            78 9999999999999999999998      9987655544 44455555 6675310 00112   2233356899999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.....   ++...+.|+++-.++.++
T Consensus       258 ~~g~~~~---~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          258 TVSAVHP---LLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             CCSSCCC---SHHHHHHEEEEEEEEECC
T ss_pred             CCCcHHH---HHHHHHHHhcCCEEEEEc
Confidence            9875421   233445566666665544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.35  E-value=0.23  Score=46.36  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=59.9

Q ss_pred             cCCCCEEEEEcccchHHHH-HHHH-HhchhhhcCCcE-EEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhhc----
Q 021356          108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETIS----  177 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~Al-A~~L-r~~~~~~~~G~~-Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~~~e~i~----  177 (313)
                      +.+ .+|.|+|.|.+|... ++.+ +..      |.+ |+...+ +++   ..+.+++.|...-+....+..+ +.    
T Consensus       171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~-~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~g  241 (357)
T 2b5w_A          171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGR-RDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYE  241 (357)
T ss_dssp             CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEEC-CCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSC
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeC-CcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCC
Confidence            345 899999999999999 9999 888      886 655444 344   5677888887531111113333 32    


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..|+|+-++....   .+++....++++-.++.++
T Consensus       242 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          242 QMDFIYEATGFPK---HAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             CEEEEEECSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCChH---HHHHHHHHHhcCCEEEEEe
Confidence            4789888887532   3455556666766555443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.34  E-value=0.27  Score=45.63  Aligned_cols=93  Identities=17%  Similarity=0.047  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhc-----cCC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~i~-----~AD  180 (313)
                      +| +++.|+|. |.+|..+++.++..      |.+|+...++. +..+.+++.|.... +.. ..+..+.+.     ..|
T Consensus       169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGE-GKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECST-THHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred             CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCH-HHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence            57 89999998 89999999999998      99876665543 44566777774210 101 123444443     479


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++...   +.++...+.|+++-.++.++
T Consensus       241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          241 GVINVSVSE---AAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             EEEECSSCH---HHHHHHTTSEEEEEEEEECC
T ss_pred             EEEECCCcH---HHHHHHHHHHhcCCEEEEEe
Confidence            998887642   35666677777766665544

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=93.30  E-value=0.29  Score=46.55  Aligned_cols=94  Identities=16%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             CEEEEEcccchHHHHHHHHHh---chhhhcCCcEEEEEecC-CcccHHHHHHC----C------------ceecCCC---
Q 021356          112 NQIGVIGWGSQGPAQAQNLRD---SLAEAKSDIVVKVGLRK-GSRSFAEARAA----G------------FTEENGT---  168 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~---~~~~~~~G~~Vivg~r~-~~~s~~~A~~~----G------------~~~~~~~---  168 (313)
                      .+|||+|+|.+|..+.+.|.+   .     .+++++...+. +.+......+.    |            +...+..   
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~-----~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v   77 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRR-----AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV   77 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGG-----GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCC-----CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEE
Confidence            589999999999999999876   3     15665444432 22222222210    0            0000000   


Q ss_pred             --cCCHHhh-hc--cCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          169 --LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       169 --~~~~~e~-i~--~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                        ..+++++ ..  ++|+|+.|+|.....+....+++   .|+  +|+|.++
T Consensus        78 ~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~a  126 (339)
T 2x5j_O           78 LHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIA---AGAKKVLFSHPG  126 (339)
T ss_dssp             ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHH---TTCSEEEESSCC
T ss_pred             EecCChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCCEEEEeccc
Confidence              1133332 12  79999999998877776665543   344  5677666

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.25  E-value=0.28  Score=43.70  Aligned_cols=81  Identities=17%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC-c-----ccHH---HHHHCCceecCCCcC---CHHhhhcc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFA---EARAAGFTEENGTLG---DIYETISG  178 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~-----~s~~---~A~~~G~~~~~~~~~---~~~e~i~~  178 (313)
                      ++|.|+|. |.+|.++++.|.+.      |++|++..|+. .     ...+   .....|+........   ++.+++++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~   76 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ   76 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred             cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence            88999995 99999999999998      98887777654 1     1111   112345421111122   34567889


Q ss_pred             CCEEEEcccch---hHHHHHHHH
Q 021356          179 SDLVLLLISDA---AQADNYEKI  198 (313)
Q Consensus       179 ADvIiLavP~~---a~~~vi~ei  198 (313)
                      +|+||.+....   ....+++..
T Consensus        77 ~d~vi~~a~~~~~~~~~~l~~aa   99 (307)
T 2gas_A           77 VDIVICAAGRLLIEDQVKIIKAI   99 (307)
T ss_dssp             CSEEEECSSSSCGGGHHHHHHHH
T ss_pred             CCEEEECCcccccccHHHHHHHH
Confidence            99999988753   233455533

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=93.25  E-value=0.061  Score=50.36  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhh-ccCCEEEEc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~-~~~e~i-~~ADvIiLa  185 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|+...+ +++..+.+++.|...- +.... +..+.+ ...|+|+-+
T Consensus       179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~  250 (360)
T 1piw_A          179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISR-SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC  250 (360)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEES-SSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcC-CHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence            57 8999999999999999999998      998655444 3455677777775310 00011 222333 478999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +.... ...+++..+.++++-.++.++
T Consensus       251 ~g~~~-~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          251 ASSLT-DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred             CCCCc-HHHHHHHHHHhcCCCEEEEec
Confidence            87510 012445566777776666554

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=93.21  E-value=0.25  Score=46.91  Aligned_cols=95  Identities=15%  Similarity=0.168  Sum_probs=54.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHH----CC------------ceecCC--C---
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENG--T---  168 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~----~G------------~~~~~~--~---  168 (313)
                      |.+|||+|+|.+|..+.+.|...     ..++++...+. +.+......+    .|            +...+.  .   
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~-----~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~   75 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKN-----PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKA   75 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTC-----TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHhCC-----CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEe
Confidence            46899999999999999998664     24565444443 2222222221    11            000000  0   


Q ss_pred             cCCHHhh-hc--cCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          169 LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       169 ~~~~~e~-i~--~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                      ..+++++ ..  ++|+|+.++|.....+....+++   .|+  +|+|.++
T Consensus        76 ~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~---~Gak~vVId~pa  122 (334)
T 3cmc_O           76 ERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLE---AGAKKVIISAPA  122 (334)
T ss_dssp             CSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSCC
T ss_pred             cCChhhcCcccCccCEEEECCCchhhHHHHHHHHH---CCCCEEEEeCCC
Confidence            1133332 12  79999999998877776665543   466  7877654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.20  E-value=0.093  Score=47.72  Aligned_cols=91  Identities=21%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhhccCCEEEEc
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~~~e~i~~ADvIiLa  185 (313)
                      +| ++|.|+|. |.+|...++.++..      |.+|+...++ ++..+.+++.|...- +... .+..+.+...|+|+- 
T Consensus       125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-  195 (302)
T 1iz0_A          125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-  195 (302)
T ss_dssp             TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred             CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence            57 99999998 99999999999998      9887655543 444566777775310 0000 122233467899998 


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +..    +.++...+.++++-.++..+
T Consensus       196 ~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          196 VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             CCH----HHHHHHHHhhccCCEEEEEe
Confidence            765    24566667777776665544

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.18  E-value=0.095  Score=48.83  Aligned_cols=94  Identities=24%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~------~A  179 (313)
                      -+| .+|.|+|.|.+|...++.++..      |. +|+ ..+.+++..+.+++.|...- +....+..+.+.      ..
T Consensus       165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          165 KLG-DTVCVIGIGPVGLMSVAGANHL------GAGRIF-AVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             CTT-CCEEEECCSHHHHHHHHHHHTT------TCSSEE-EECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEE-EECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCC
Confidence            357 8999999999999999999998      98 554 45555555678888886320 001113333221      48


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+|+-++....   .+++..+.++++-.++.++
T Consensus       237 D~v~d~~g~~~---~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          237 DKVVIAGGDVH---TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCChH---HHHHHHHHHhcCCEEEEec
Confidence            99998887632   3455556677777666554

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=93.14  E-value=0.069  Score=51.48  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc---EEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      ++|+||| .|..|.-+.+.|.+.      ++   ++.......+  +...   -.|  ...+   ..+ .+.++++|+|+
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~~~~---~~~-~~~~~~~Dvvf   69 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDITIE---ETT-ETAFEGVDIAL   69 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEEEEE---ECC-TTTTTTCSEEE
T ss_pred             cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCceEe---eCC-HHHhcCCCEEE
Confidence            6899999 899999999988875      44   3322222111  1100   011  1110   012 23468999999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+|.....++...+.   +.|+.|+|.++
T Consensus        70 ~a~~~~~s~~~a~~~~---~~G~~vIDlSa   96 (366)
T 3pwk_A           70 FSAGSSTSAKYAPYAV---KAGVVVVDNTS   96 (366)
T ss_dssp             ECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred             ECCChHhHHHHHHHHH---HCCCEEEEcCC
Confidence            9999877777777654   35888998876

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.13  E-value=0.1  Score=49.04  Aligned_cols=92  Identities=20%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCCE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~ADv  181 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|++.. .+++..+.+++.|...- +....+..+.+      ...|+
T Consensus       189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~-~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~  260 (363)
T 3uog_A          189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTS-SSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH  260 (363)
T ss_dssp             TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEe-cCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence            56 8999999999999999999998      99876554 44455667777775310 00011332222      15788


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++....    ++.....++++-.++.++
T Consensus       261 vid~~g~~~----~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          261 ILEIAGGAG----LGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             EEEETTSSC----HHHHHHHEEEEEEEEEEC
T ss_pred             EEECCChHH----HHHHHHHhhcCCEEEEEe
Confidence            888877432    444445566666555444

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.13  E-value=0.22  Score=46.26  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             CCCCEEEEE-cccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-----cCCEE
Q 021356          109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDLV  182 (313)
Q Consensus       109 ~GikkIgII-G~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-----~ADvI  182 (313)
                      +| .+|.|+ |.|.+|...++.++..      |.+|+.. ..+++..+.+++.|...--....+..+.+.     ..|+|
T Consensus       150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv  221 (346)
T 3fbg_A          150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITT-ASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV  221 (346)
T ss_dssp             TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEE-CCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred             CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEE-eCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence            68 999999 7999999999999998      9976554 444556677777775320001123333332     47999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +-++...   ..++.....++++-.++..++
T Consensus       222 ~d~~g~~---~~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          222 FCTFNTD---MYYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             EESSCHH---HHHHHHHHHEEEEEEEEESSC
T ss_pred             EECCCch---HHHHHHHHHhccCCEEEEECC
Confidence            9887743   244555666777776665554

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=93.08  E-value=0.098  Score=49.03  Aligned_cols=72  Identities=13%  Similarity=-0.014  Sum_probs=53.3

Q ss_pred             cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ..|+| .+|++||=   +++..|++..+...      |+++.+...++-.... ..+.|+..    ..+++|+++++|+|
T Consensus       142 g~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvv  209 (291)
T 3d6n_B          142 GEVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVV  209 (291)
T ss_dssp             SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEE
T ss_pred             CCcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEE
Confidence            46889 99999997   89999999999999      9998776543211101 11346442    46899999999999


Q ss_pred             EEcccchh
Q 021356          183 LLLISDAA  190 (313)
Q Consensus       183 iLavP~~a  190 (313)
                      .. +-.+.
T Consensus       210 y~-~~~q~  216 (291)
T 3d6n_B          210 IW-LRLQK  216 (291)
T ss_dssp             EE-CCCCT
T ss_pred             EE-eCccc
Confidence            99 76554

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.04  E-value=0.22  Score=46.05  Aligned_cols=95  Identities=17%  Similarity=0.185  Sum_probs=61.6

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh------ccCCE
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL  181 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i------~~ADv  181 (313)
                      -+| .++.|+|.|.+|...++.++..      |-..+++.+.+++..+.+++.|...--....+..+.+      ...|+
T Consensus       170 ~~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~  242 (345)
T 3jv7_A          170 GPG-STAVVIGVGGLGHVGIQILRAV------SAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATA  242 (345)
T ss_dssp             CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEE
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeE
Confidence            357 9999999999999999998876      5433445555556677888888532100011222222      16899


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++....   .++.....++++-.++.++
T Consensus       243 v~d~~G~~~---~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          243 VFDFVGAQS---TIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEESSCCHH---HHHHHHHHEEEEEEEEECS
T ss_pred             EEECCCCHH---HHHHHHHHHhcCCEEEEEC
Confidence            999988653   4555556677776666554

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.00  E-value=0.15  Score=47.20  Aligned_cols=37  Identities=16%  Similarity=0.192  Sum_probs=32.5

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .-+|+| ++|.|||.|.+|.+-++.|.+.      |.+|++...
T Consensus         8 ~~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap   44 (274)
T 1kyq_A            8 AHQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSP   44 (274)
T ss_dssp             EECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEE
T ss_pred             EEEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcC
Confidence            357899 9999999999999999999999      998766654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.96  E-value=0.23  Score=42.79  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             cCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHH-HHCCceecCC-CcCCHHhhhccCCEE
Q 021356          108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA-RAAGFTEENG-TLGDIYETISGSDLV  182 (313)
Q Consensus       108 l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A-~~~G~~~~~~-~~~~~~e~i~~ADvI  182 (313)
                      +.| |+|.|.| .|-+|.++++.|.+.      |.  +|++..|+.....+.. ....+...|- ...+.++++++.|+|
T Consensus        16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   88 (242)
T 2bka_A           16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG   88 (242)
T ss_dssp             HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred             hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEE
Confidence            678 9999999 699999999999998      98  8877776543211110 0111111000 012445678899999


Q ss_pred             EEcccc
Q 021356          183 LLLISD  188 (313)
Q Consensus       183 iLavP~  188 (313)
                      |.+...
T Consensus        89 i~~ag~   94 (242)
T 2bka_A           89 FCCLGT   94 (242)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            998754

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=92.95  E-value=0.31  Score=48.57  Aligned_cols=74  Identities=22%  Similarity=0.110  Sum_probs=49.7

Q ss_pred             ccCCCCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          107 AFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+.+ ++|-|||.|-.|.+ +|+.|++.      |++|.+.+.+.. ...+..++.|+....+  .+.+++..++|+||+
T Consensus        16 ~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~vV~   86 (524)
T 3hn7_A           16 YFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLVVV   86 (524)
T ss_dssp             ---C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEEEE
T ss_pred             eecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEEEE
Confidence            4566 99999999999997 79999999      999876665432 3334555678754211  244455568999998


Q ss_pred             c--ccch
Q 021356          185 L--ISDA  189 (313)
Q Consensus       185 a--vP~~  189 (313)
                      .  +|++
T Consensus        87 Spgi~~~   93 (524)
T 3hn7_A           87 GNAMKRG   93 (524)
T ss_dssp             CTTCCTT
T ss_pred             CCCcCCC
Confidence            4  5553

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.88  E-value=0.11  Score=48.31  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      ||||+|||-|..|..+++.+++.      |+++++.+.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~   32 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDK   32 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence            69999999999999999999999      999766643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.88  E-value=0.46  Score=43.24  Aligned_cols=74  Identities=19%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH---HH-------CCceecCCCcCC---H
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---RA-------AGFTEENGTLGD---I  172 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A---~~-------~G~~~~~~~~~~---~  172 (313)
                      .+.+ |+|.|.| .|.+|..+++.|.+.      |++|++..|.........   ..       .++........+   +
T Consensus        22 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~   94 (351)
T 3ruf_A           22 IFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC   94 (351)
T ss_dssp             HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred             CCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence            4567 9999999 699999999999998      999877777543322211   11       232211111223   4


Q ss_pred             HhhhccCCEEEEccc
Q 021356          173 YETISGSDLVLLLIS  187 (313)
Q Consensus       173 ~e~i~~ADvIiLavP  187 (313)
                      .++++++|+||-+..
T Consensus        95 ~~~~~~~d~Vih~A~  109 (351)
T 3ruf_A           95 EQVMKGVDHVLHQAA  109 (351)
T ss_dssp             HHHTTTCSEEEECCC
T ss_pred             HHHhcCCCEEEECCc
Confidence            567889999998764

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=92.85  E-value=0.21  Score=47.42  Aligned_cols=93  Identities=16%  Similarity=0.096  Sum_probs=52.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCcee---------cCC------------Cc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------ENG------------TL  169 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~---------~~~------------~~  169 (313)
                      .+|||+|+|.+|.-+.+.|...     ..++++...+. +........+..-+.         ++.            ..
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~-----~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~   76 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKR-----SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAE   76 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             eEEEEECcCHHHHHHHHHHHcC-----CCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEc
Confidence            5899999999999999998765     24565544443 222211111221100         000            01


Q ss_pred             CCHHhh---hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          170 GDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       170 ~~~~e~---i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      .+++++   ..++|+|+.++|-....+....+++   .|+.++|.+
T Consensus        77 ~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~---~GakvVdlS  119 (330)
T 1gad_O           77 RDPANLKWDEVGVDVVAEATGLFLTDETARKHIT---AGAKKVVMT  119 (330)
T ss_dssp             SSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEES
T ss_pred             CChhhCccccccCCEEEECCCccccHHHHHHHHH---CCCEEEEEC
Confidence            123332   1479999999998877666665443   465555433

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.82  E-value=0.49  Score=42.23  Aligned_cols=71  Identities=23%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccH-HHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa  185 (313)
                      |+|.|+|. |.+|.++++.|.+.      | ++|++..|...+.. +.....|+........+   +.++++++|+|+.+
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   79 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV   79 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence            78999996 99999999999988      8 88877776543321 11123443211112233   44678899999998


Q ss_pred             ccc
Q 021356          186 ISD  188 (313)
Q Consensus       186 vP~  188 (313)
                      ...
T Consensus        80 a~~   82 (299)
T 2wm3_A           80 TNY   82 (299)
T ss_dssp             CCH
T ss_pred             CCC
Confidence            753

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.82  E-value=0.27  Score=44.01  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=47.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc----cHHH---HHHCCceecCCCcCC---HHhhhccCC
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGSD  180 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~---A~~~G~~~~~~~~~~---~~e~i~~AD  180 (313)
                      |+|.|+| .|.+|.++++.|.+.      |++|++..|....    ..+.   ....|+........+   +.++++++|
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d   78 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD   78 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence            7899999 599999999999998      9888777665321    1111   112343211122333   456788999


Q ss_pred             EEEEcccch
Q 021356          181 LVLLLISDA  189 (313)
Q Consensus       181 vIiLavP~~  189 (313)
                      +||.+....
T Consensus        79 ~vi~~a~~~   87 (313)
T 1qyd_A           79 VVISALAGG   87 (313)
T ss_dssp             EEEECCCCS
T ss_pred             EEEECCccc
Confidence            999987643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.77  E-value=0.77  Score=43.04  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHh-chhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-----cCCE
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDL  181 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-----~ADv  181 (313)
                      +| .+|.|+| .|.+|...++.++. .      |.+|+ +.+.+++..+.+++.|...--....+..+.+.     ..|+
T Consensus       171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi-~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVI-ATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEE-EECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEE
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEE-EEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceE
Confidence            57 8999999 99999999999987 5      77765 44454556677888885320001123333332     5899


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++...   ..+++....++++-.++.++
T Consensus       243 vid~~g~~---~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          243 VFSTTHTD---KHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             EEECSCHH---HHHHHHHHHSCTTCEEEECS
T ss_pred             EEECCCch---hhHHHHHHHhcCCCEEEEEC
Confidence            99888743   24566666788877766553

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.74  E-value=0.4  Score=46.08  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---------------
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---------------  171 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~---------------  171 (313)
                      +| ++|.|+|. |.+|...++.++..      |.+|++..+ +++..+.+++.|...- +....+               
T Consensus       220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVS-SAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence            56 89999998 99999999999998      998766654 4455677788885310 000000               


Q ss_pred             ----HHh---hh-ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          172 ----IYE---TI-SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       172 ----~~e---~i-~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                          .++   .. ...|+|+-++...    .++.....++++-.++.++
T Consensus       292 ~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          292 GRKLAKLVVEKAGREPDIVFEHTGRV----TFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEECSCHH----HHHHHHHHSCTTCEEEESC
T ss_pred             hhHHHHHHHHHhCCCceEEEECCCch----HHHHHHHHHhcCCEEEEEe
Confidence                011   11 3589999988752    4566667788887776655

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=92.73  E-value=0.48  Score=43.35  Aligned_cols=76  Identities=16%  Similarity=0.025  Sum_probs=49.5

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----------HCCceecCCCcCC---
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----------AAGFTEENGTLGD---  171 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----------~~G~~~~~~~~~~---  171 (313)
                      ..+.+ |+|.|.|. |.+|..+++.|.+.      |++|++..|......+...          ..++........+   
T Consensus        23 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~   95 (352)
T 1sb8_A           23 LPAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD   95 (352)
T ss_dssp             HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHH
T ss_pred             cCccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHH
Confidence            34678 99999996 99999999999998      9988777665432111111          1232110111223   


Q ss_pred             HHhhhccCCEEEEcccc
Q 021356          172 IYETISGSDLVLLLISD  188 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~  188 (313)
                      +.+++++.|+||-+...
T Consensus        96 ~~~~~~~~d~vih~A~~  112 (352)
T 1sb8_A           96 CNNACAGVDYVLHQAAL  112 (352)
T ss_dssp             HHHHHTTCSEEEECCSC
T ss_pred             HHHHhcCCCEEEECCcc
Confidence            44678899999987653

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.73  E-value=0.038  Score=50.54  Aligned_cols=70  Identities=24%  Similarity=0.138  Sum_probs=43.7

Q ss_pred             cccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccC
Q 021356          104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGS  179 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~A  179 (313)
                      +...+++ |+|.|.|. |.+|..+++.|.+.      |++|++..|....     ....+..  ....   .+.++++++
T Consensus        13 ~~~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-----~~~~~~~--~Dl~d~~~~~~~~~~~   78 (347)
T 4id9_A           13 GLVPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-----TGGEEVV--GSLEDGQALSDAIMGV   78 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-----SCCSEEE--SCTTCHHHHHHHHTTC
T ss_pred             cccccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-----CCccEEe--cCcCCHHHHHHHHhCC
Confidence            3578888 99999996 99999999999999      9988777665432     1111221  1122   345678899


Q ss_pred             CEEEEccc
Q 021356          180 DLVLLLIS  187 (313)
Q Consensus       180 DvIiLavP  187 (313)
                      |+||-+..
T Consensus        79 d~vih~A~   86 (347)
T 4id9_A           79 SAVLHLGA   86 (347)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99997653

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=92.71  E-value=0.42  Score=45.51  Aligned_cols=95  Identities=19%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHC----C------------ceecCC------C
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAA----G------------FTEENG------T  168 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~----G------------~~~~~~------~  168 (313)
                      .+|||+|+|.+|+.+.+.|...-   +.+++++...+. +.+......+.    |            +.. ++      .
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~---~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v-~g~~i~v~~   78 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQ---NTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITV-NGKTMKIVC   78 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCS---CCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEE-TTEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHhcC---CCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeee-cCceEEEEe
Confidence            58999999999999999987640   124675444432 22221111111    0            100 00      0


Q ss_pred             cCCHHhhh---ccCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          169 LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       169 ~~~~~e~i---~~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                      ..+++++-   .++|+|+.|++.....+....+++   .|+  +|++.++
T Consensus        79 ~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~~  125 (339)
T 3b1j_A           79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQ---AGAKKVLITAPG  125 (339)
T ss_dssp             CSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHH---TTCSEEEESSCC
T ss_pred             cCChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCcEEEEeCCC
Confidence            12344432   278999999998777666665443   243  3565554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.71  E-value=0.055  Score=48.23  Aligned_cols=66  Identities=12%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhcc-CCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISG-SDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~-ADvIiLavP  187 (313)
                      |+|.|+|.|.+|..+++.|.+.      |++|+...|..+..   .....+..  ....   ++.+++++ +|+||-+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~---~~~~~~~~--~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM---PAGVQTLI--ADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC---CTTCCEEE--CCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc---ccCCceEE--ccCCChHHHHHhhcCCCCEEEEeCC
Confidence            8999999999999999999998      99887777664321   01111221  1122   23456666 999998764


Q ss_pred             c
Q 021356          188 D  188 (313)
Q Consensus       188 ~  188 (313)
                      .
T Consensus        73 ~   73 (286)
T 3gpi_A           73 A   73 (286)
T ss_dssp             H
T ss_pred             C
Confidence            3

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=92.71  E-value=0.086  Score=51.01  Aligned_cols=68  Identities=21%  Similarity=0.130  Sum_probs=44.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEE
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL  183 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIi  183 (313)
                      -++| ++|+|||-|.+|..+++.+++.      |+++++.+ .++.............  ....+   +.++++++|+|+
T Consensus        32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d-~~~~~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~  101 (419)
T 4e4t_A           32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLD-PDPASPAGAVADRHLR--AAYDDEAALAELAGLCEAVS  101 (419)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCTTCHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEC-CCCcCchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence            5688 9999999999999999999999      99976654 3322222222222221  11223   335567889888


Q ss_pred             E
Q 021356          184 L  184 (313)
Q Consensus       184 L  184 (313)
                      .
T Consensus       102 ~  102 (419)
T 4e4t_A          102 T  102 (419)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.70  E-value=0.46  Score=46.68  Aligned_cols=91  Identities=20%  Similarity=0.192  Sum_probs=61.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCH----HhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDI----YETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~----~e~i~~ADvIiL  184 (313)
                      ++|-|+|.|++|..+|+.|.+       +++|.+......+....+.+..   +..  +...+.    ++=+.++|+++-
T Consensus       236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~--GD~td~~~L~ee~i~~~D~~ia  306 (461)
T 4g65_A          236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFC--GDAADQELLTEENIDQVDVFIA  306 (461)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEE--SCTTCHHHHHHTTGGGCSEEEE
T ss_pred             cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEe--ccccchhhHhhcCchhhcEEEE
Confidence            899999999999999999854       5677777766555555666543   222  222232    245689999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +|.++...=+..-+++.+....++..+
T Consensus       307 ~T~~De~Ni~~~llAk~~gv~kvIa~v  333 (461)
T 4g65_A          307 LTNEDETNIMSAMLAKRMGAKKVMVLI  333 (461)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             cccCcHHHHHHHHHHHHcCCccccccc
Confidence            998876433444556666555666544

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=92.60  E-value=0.28  Score=48.18  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=49.9

Q ss_pred             cCCCCEEEEEc-----cc---chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCC
Q 021356          108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGD  171 (313)
Q Consensus       108 l~GikkIgIIG-----~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~~~~~  171 (313)
                      |+| .+|+|||     +|   ++..|++..+...      |++|.+....+-    +..+.    +.+.|....  ...+
T Consensus       186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~--~~~d  256 (418)
T 2yfk_A          186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFT--KTNS  256 (418)
T ss_dssp             GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEE--EESC
T ss_pred             cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEE--EEcC
Confidence            788 9999997     24   3999999999999      999877765422    22222    334563110  1468


Q ss_pred             HHhhhccCCEEEEcc
Q 021356          172 IYETISGSDLVLLLI  186 (313)
Q Consensus       172 ~~e~i~~ADvIiLav  186 (313)
                      ++|+++++|+|..-+
T Consensus       257 ~~eav~~ADVVytd~  271 (418)
T 2yfk_A          257 MAEAFKDADVVYPKS  271 (418)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             HHHHhcCCCEEEEcc
Confidence            999999999999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.59  E-value=0.18  Score=46.80  Aligned_cols=91  Identities=15%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc------cCC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~------~AD  180 (313)
                      +| ++|.|+|. |.+|...++.++..      |.+|+...+. ++..+.+++.|...- +.. .+..+.+.      ..|
T Consensus       159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D  229 (342)
T 4eye_A          159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD  229 (342)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence            57 89999998 99999999999999      9987655543 455667777775310 111 23333221      589


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++...    .++.....++++-.++.++
T Consensus       230 vvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          230 MVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             EEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence            999888753    4556666777777666554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.56  E-value=0.19  Score=46.34  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-HHCCceec-CCCcCCHHhhhc-----cCC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETIS-----GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-~~~~~~~~e~i~-----~AD  180 (313)
                      +| ++|.|+|. |.+|.+.++.++..      |.+|+...++ ++..+.+ ++.|...- +....+..+.+.     ..|
T Consensus       149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence            57 89999998 99999999999998      9987655544 4445555 66775210 111123333332     489


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+-++..    +.++...+.++++-.++.++.
T Consensus       221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          221 VFFDNVGG----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence            99888774    356677778888777766553

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.52  E-value=0.54  Score=46.04  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             cccCCCCEEEEEcccc----------hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-------------Cc
Q 021356          106 DAFNGINQIGVIGWGS----------QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GF  162 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~----------mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------G~  162 (313)
                      ..++| ++|+|.|+--          -...+++.|.+.      |.+|.+.+..-.. .+.....             ++
T Consensus       325 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~  396 (467)
T 2q3e_A          325 NTVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLV  396 (467)
T ss_dssp             TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHE
T ss_pred             cccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCce
Confidence            35789 9999999863          667788888888      9987665543221 1110110             12


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHHH-HHHHHhcCCCCcEEEEecCch
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~v-i~ei~~~mk~gaiLid~~Gv~  215 (313)
                      ..    ..+..|+++++|+|+|++.-....++ ++++...|+...+|+|..++.
T Consensus       397 ~~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~  446 (467)
T 2q3e_A          397 TI----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVL  446 (467)
T ss_dssp             EE----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTT
T ss_pred             ee----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcC
Confidence            21    23778899999999999998877653 567777888766688988763

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.43  E-value=0.66  Score=45.81  Aligned_cols=94  Identities=10%  Similarity=0.100  Sum_probs=65.2

Q ss_pred             ccCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-C------------Cce
Q 021356          107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A------------GFT  163 (313)
Q Consensus       107 ~l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~------------G~~  163 (313)
                      .++| ++|+|.|+-          +-.-.+++.|.+.      |.+|.+.+..-.   +.+.+ .            .+.
T Consensus       325 ~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~~~~~~~~~~~  394 (478)
T 2y0c_A          325 DLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPVAQ---EEARRVIALDLADHPSWLERLS  394 (478)
T ss_dssp             CCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTTTH---HHHHHHHHHHTTTCHHHHTTEE
T ss_pred             cCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCCcc---HHHHHhhcccccccccccccee
Confidence            6789 999999973          2445677777777      988766554321   12211 1            232


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEecCch
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      .    ..+.++++++||+|+|++.-..... -++++...|+. .+|+|..++.
T Consensus       395 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~~  442 (478)
T 2y0c_A          395 F----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNLY  442 (478)
T ss_dssp             E----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCCS
T ss_pred             e----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCCC
Confidence            1    3477899999999999999887655 35567777764 7899998864

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.43  E-value=0.18  Score=46.35  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             cCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhhccCCEEEE
Q 021356          108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLL  184 (313)
Q Consensus       108 l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~-~~e~i~~ADvIiL  184 (313)
                      -+| .+|.|+| .|.+|...++.++..      |.+|+... +. +..+.+++.|...- +....+ ..+.+...|+|+-
T Consensus       151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~-~~-~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d  221 (321)
T 3tqh_A          151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTA-SK-RNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID  221 (321)
T ss_dssp             CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEE-CH-HHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred             CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEe-cc-chHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence            367 9999997 999999999999998      99876554 32 33677788885310 111223 5666788999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ++....    +++....++++-.++.++..
T Consensus       222 ~~g~~~----~~~~~~~l~~~G~iv~~g~~  247 (321)
T 3tqh_A          222 LVGGDV----GIQSIDCLKETGCIVSVPTI  247 (321)
T ss_dssp             SSCHHH----HHHHGGGEEEEEEEEECCST
T ss_pred             CCCcHH----HHHHHHhccCCCEEEEeCCC
Confidence            987533    35667788888777766543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.41  E-value=0.61  Score=43.48  Aligned_cols=43  Identities=16%  Similarity=0.105  Sum_probs=29.5

Q ss_pred             CCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEe
Q 021356           98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL  147 (313)
Q Consensus        98 ~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~  147 (313)
                      +|.+-...+.|+. .+|.|||+|-+|..++++|...      |+ ++.+.+
T Consensus        24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD   67 (292)
T 3h8v_A           24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFD   67 (292)
T ss_dssp             --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEC
T ss_pred             ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEEC
Confidence            4554223467888 9999999999999999999998      76 444443

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.38  E-value=0.33  Score=45.52  Aligned_cols=93  Identities=14%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL  181 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~ADv  181 (313)
                      +| ++|.|+| .|.+|...++.++..      |.+|+...+ +++..+.+++.|...- +....+..+.+.     ..|+
T Consensus       163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~-~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~  234 (362)
T 2c0c_A          163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCS-SDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV  234 (362)
T ss_dssp             TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred             CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEEC-CHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence            57 8999999 799999999999998      998655544 4455567777775310 011123333332     4799


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      |+-++..    ..++...+.++++-.++..+.
T Consensus       235 vid~~g~----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          235 VYESVGG----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence            9999875    355666667777766665554

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=92.37  E-value=0.3  Score=48.25  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .+|+| ++|+|.|+|++|...|+.|.+.      |.+|+...+
T Consensus       231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvVavsD  266 (440)
T 3aog_A          231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVVAVQD  266 (440)
T ss_dssp             CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEEC
T ss_pred             CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEEEEEc
Confidence            47999 9999999999999999999998      988763333

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.34  E-value=0.2  Score=45.62  Aligned_cols=77  Identities=14%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             cccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC---HHhhhc-
Q 021356          104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS-  177 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~---~~e~i~-  177 (313)
                      .++.+.| |+|.|.|. |-+|.++++.|.+.      |++|++..|......+...+ .++........+   +.++++ 
T Consensus        14 ~~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~   86 (330)
T 2pzm_A           14 LVPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS   86 (330)
T ss_dssp             CCSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CcccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence            5789999 99999996 99999999999998      99987777643221100000 121100011223   345677 


Q ss_pred             -cCCEEEEccc
Q 021356          178 -GSDLVLLLIS  187 (313)
Q Consensus       178 -~ADvIiLavP  187 (313)
                       +.|+||-+..
T Consensus        87 ~~~D~vih~A~   97 (330)
T 2pzm_A           87 FKPTHVVHSAA   97 (330)
T ss_dssp             HCCSEEEECCC
T ss_pred             cCCCEEEECCc
Confidence             8999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=92.30  E-value=0.68  Score=41.90  Aligned_cols=92  Identities=15%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHhhhccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYETISGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~e~i~~ADvIi  183 (313)
                      +| .+|--||+|. |.-....++..      |.+ +++.+.++...+.+++.    |.... .....+..+.-...|+|+
T Consensus        90 ~~-~~vLDiGcG~-G~~~~~la~~~------~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~  160 (318)
T 2fk8_A           90 PG-MTLLDIGCGW-GTTMRRAVERF------DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIV  160 (318)
T ss_dssp             TT-CEEEEESCTT-SHHHHHHHHHH------CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEE
T ss_pred             Cc-CEEEEEcccc-hHHHHHHHHHC------CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEE
Confidence            57 8999999998 54444444444      655 46777766655555442    32100 001234444336789999


Q ss_pred             Ec-----ccchhHHHHHHHHHhcCCCCcEEE
Q 021356          184 LL-----ISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       184 La-----vP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      ..     +++.....+++++...||||-.++
T Consensus       161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  191 (318)
T 2fk8_A          161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMT  191 (318)
T ss_dssp             EESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             EeChHHhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence            86     565566779999999999987655

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.28  E-value=0.45  Score=45.16  Aligned_cols=96  Identities=14%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHH----CCce-----e------cCC---Cc---
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AGFT-----E------ENG---TL---  169 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~----~G~~-----~------~~~---~~---  169 (313)
                      .+|||+|+|.+|..+.+.|....   +.+++++...+. +.+......+    .|--     .      -++   .+   
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~---~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~   77 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERK---NPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAE   77 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT---CTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCC---CCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEec
Confidence            47999999999999999986540   125776544442 1111111111    1110     0      000   01   


Q ss_pred             CCHHhh-hc--cCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          170 GDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       170 ~~~~e~-i~--~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                      .+++++ ..  ++|+|+.++|.....+....+++   .|+  +|+|.++
T Consensus        78 ~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~---aGakkvVId~~a  123 (332)
T 1hdg_O           78 PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQ---AGAKKVIITAPA  123 (332)
T ss_dssp             SSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSCC
T ss_pred             CChHHCcccccCCCEEEECCccchhHHHHHHHHH---cCCcEEEEeCCC
Confidence            133332 12  79999999998877766665543   466  7877664

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=92.21  E-value=0.23  Score=44.70  Aligned_cols=68  Identities=19%  Similarity=0.210  Sum_probs=44.4

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+|.|.| .|.+|..+++.|.+.      |++|++..|. +...+ ....-+...|-...++.++++++|+||.+..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-INDYEYRVSDYTLEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CCceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence            8999999 699999999999999      9998777776 32222 1111122111111234567889999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.13  E-value=0.48  Score=44.07  Aligned_cols=94  Identities=10%  Similarity=-0.019  Sum_probs=58.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCc---CCHHhhh------c
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTL---GDIYETI------S  177 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~~~---~~~~e~i------~  177 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+.+++.+.+++..+.+++.+  ..+.....   .+..+.+      .
T Consensus       179 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          179 LG-DPVLICGAGPIGLITMLCAKAA------GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCC
Confidence            57 9999999999999999999998      9873344444445555666542  11100000   1112222      2


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..|+|+-++....   .++.....++++-.++.++
T Consensus       252 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          252 EPAVALECTGVES---SIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             CCSEEEECSCCHH---HHHHHHHHSCTTCEEEECC
T ss_pred             CCCEEEECCCChH---HHHHHHHHhcCCCEEEEEc
Confidence            5899998887542   3555566677777666554

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.09  E-value=0.086  Score=51.15  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +++| |+|.|||.|..|.+.|+.|.+.      |++|...+.+.... ..... .|+....+.  ...+.++++|+|++.
T Consensus         2 ~~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s   71 (439)
T 2x5o_A            2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVAS   71 (439)
T ss_dssp             CCTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEEC
T ss_pred             CCCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeC
Confidence            4678 9999999999999999999998      99887666543221 11112 455421111  125666789999996


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      .
T Consensus        72 ~   72 (439)
T 2x5o_A           72 P   72 (439)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=92.01  E-value=0.3  Score=47.84  Aligned_cols=79  Identities=14%  Similarity=0.072  Sum_probs=48.4

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHh-chhhhcCCcEEEEEecC----------CcccH-HHHHHCCceec--CCCcCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK----------GSRSF-AEARAAGFTEE--NGTLGD  171 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r~----------~~~s~-~~A~~~G~~~~--~~~~~~  171 (313)
                      .+++| ++++|.|+|++|...++.|.+ .      |.+|+...+.          +.+.. +...+.|-..+  +....+
T Consensus       205 ~~l~g-~~vaVqG~GnVG~~~a~~L~e~~------GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~  277 (415)
T 2tmg_A          205 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERIT  277 (415)
T ss_dssp             CCTTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEEC
T ss_pred             CCcCC-CEEEEECCcHHHHHHHHHHHHhc------CCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcC
Confidence            47999 999999999999999999988 7      8887633333          22222 22223331100  001123


Q ss_pred             HHhhh-ccCCEEEEcccchhH
Q 021356          172 IYETI-SGSDLVLLLISDAAQ  191 (313)
Q Consensus       172 ~~e~i-~~ADvIiLavP~~a~  191 (313)
                      .++++ .+||+++-|...+.+
T Consensus       278 ~~eil~~~~DIliP~A~~n~i  298 (415)
T 2tmg_A          278 NEELLELDVDILVPAALEGAI  298 (415)
T ss_dssp             HHHHTTCSCSEEEECSSTTSB
T ss_pred             chhhhcCCCcEEEecCCcCcc
Confidence            44544 378888888765544

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.99  E-value=0.31  Score=44.79  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~AD  180 (313)
                      +| ++|.|+| .|.+|...++.++..      |.+|+...+ +++..+.+++.|...- +....+..+.+      ...|
T Consensus       140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVS-SPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEES-SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence            57 9999999 899999999999999      998765554 3455567777774210 11112333322      2578


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++..    +.++...+.++++-.++..+
T Consensus       212 vvid~~g~----~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          212 VVYDGVGQ----DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             EEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence            88888775    24555666777776666554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=91.99  E-value=0.25  Score=45.93  Aligned_cols=76  Identities=16%  Similarity=0.095  Sum_probs=48.5

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhhccC
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS  179 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~e~i~~A  179 (313)
                      ..+++ |+|.|.| .|.+|..+++.|.+.      | ++|++..|......+... ..++........+   +.++++++
T Consensus        28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~  100 (377)
T 2q1s_A           28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY  100 (377)
T ss_dssp             GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred             HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence            46788 9999999 599999999999998      9 888776665332111000 1122110111223   34577899


Q ss_pred             CEEEEcccc
Q 021356          180 DLVLLLISD  188 (313)
Q Consensus       180 DvIiLavP~  188 (313)
                      |+||-+...
T Consensus       101 d~Vih~A~~  109 (377)
T 2q1s_A          101 DYVFHLATY  109 (377)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999987653

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=91.94  E-value=0.2  Score=49.22  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK  144 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vi  144 (313)
                      .+|+| +++.|.|.|++|...|+.|.+.      |.+|+
T Consensus       214 ~~l~g-k~vaVqG~GnVG~~~a~~L~~~------GakVV  245 (419)
T 3aoe_E          214 LDLRG-ARVVVQGLGQVGAAVALHAERL------GMRVV  245 (419)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE
T ss_pred             CCccC-CEEEEECcCHHHHHHHHHHHHC------CCEEE
Confidence            47999 9999999999999999999998      99876

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=91.93  E-value=0.26  Score=45.41  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~AD  180 (313)
                      +| +++.|+| .|.+|...++.++..      |.+|+...+ +++..+.+++.|...- +....+..+.+      ...|
T Consensus       148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAS-TDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence            67 9999999 899999999999998      998765554 4455667888875310 01112333322      2579


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+-++..    +.++...+.++++-.++.++.
T Consensus       220 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          220 ASFDSVGK----DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEECCGG----GGHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCh----HHHHHHHHHhccCCEEEEEcC
Confidence            99998875    345555667778777766553

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=91.93  E-value=0.42  Score=45.07  Aligned_cols=73  Identities=11%  Similarity=0.081  Sum_probs=52.3

Q ss_pred             cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~  178 (313)
                      ..|+| .+|++||=   +++..|++..+...     .|+++.+...++    +...+.+++.|...+  ...+++|++++
T Consensus       150 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~  221 (310)
T 3csu_A          150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE  221 (310)
T ss_dssp             SCSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTT
T ss_pred             CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence            46889 99999997   58999999998764     278877765432    223355666674310  14689999999


Q ss_pred             CCEEEEcc
Q 021356          179 SDLVLLLI  186 (313)
Q Consensus       179 ADvIiLav  186 (313)
                      +|+|....
T Consensus       222 aDvvyt~~  229 (310)
T 3csu_A          222 VDILYMTR  229 (310)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99998865

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=91.90  E-value=1.4  Score=41.31  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             cCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCC
Q 021356          108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD  180 (313)
Q Consensus       108 l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~AD  180 (313)
                      -+| .+|.|+|. |.+|...++.++..      |.+|+...  +++..+.+++.|...- +....+..+.+.     ..|
T Consensus       163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~--~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d  233 (371)
T 3gqv_A          163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC--SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR  233 (371)
T ss_dssp             SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE--CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred             CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe--CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence            578 99999999 89999999999998      99875543  3566778889886310 111123333332     389


Q ss_pred             EEEEcccchhHHHHHHHHHhcC-CCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~m-k~gaiLid~~G  213 (313)
                      +|+-++....   .++.....+ +++-.++.++.
T Consensus       234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g~  264 (371)
T 3gqv_A          234 YALDCITNVE---STTFCFAAIGRAGGHYVSLNP  264 (371)
T ss_dssp             EEEESSCSHH---HHHHHHHHSCTTCEEEEESSC
T ss_pred             EEEECCCchH---HHHHHHHHhhcCCCEEEEEec
Confidence            9999988643   344445556 56666665553

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=91.90  E-value=0.61  Score=40.45  Aligned_cols=45  Identities=22%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             CcccccccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356           99 DLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus        99 w~f~~~~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |.++..+..|+| |++-|.|. |-||.++++.|.+.      |.+|++..|+.
T Consensus         3 ~~~~~~~~~l~~-k~vlITGas~gIG~~ia~~l~~~------G~~V~~~~r~~   48 (247)
T 3i1j_A            3 FDYSAHPELLKG-RVILVTGAARGIGAAAARAYAAH------GASVVLLGRTE   48 (247)
T ss_dssp             CCCCCCTTTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCCCCCCccCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEecCH
Confidence            444445678999 99999995 79999999999999      99987776653

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.89  E-value=0.2  Score=45.80  Aligned_cols=89  Identities=15%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|+...  +++..+.+++.|...-   ..+.+++-...|+|+-++..
T Consensus       142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~  209 (315)
T 3goh_A          142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS  209 (315)
T ss_dssp             SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred             CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence            57 9999999999999999999999      99765554  4566778888887531   11222333568999988765


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ..    +.+....++++-.++.+++
T Consensus       210 ~~----~~~~~~~l~~~G~~v~~g~  230 (315)
T 3goh_A          210 QN----AAALVPSLKANGHIICIQD  230 (315)
T ss_dssp             --------TTGGGEEEEEEEEEECC
T ss_pred             hh----HHHHHHHhcCCCEEEEEeC
Confidence            33    2445667778776665544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=91.89  E-value=0.74  Score=37.34  Aligned_cols=94  Identities=13%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhh----ccC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI----SGS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i----~~A  179 (313)
                      -+| ++|.-||+|. |. ++..+.+.+    .+.+ +++.+.++...+.+++    .|+.+.-....+..+.+    ...
T Consensus        24 ~~~-~~vldiG~G~-G~-~~~~l~~~~----~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   95 (178)
T 3hm2_A           24 KPH-ETLWDIGGGS-GS-IAIEWLRST----PQTT-AVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP   95 (178)
T ss_dssp             CTT-EEEEEESTTT-TH-HHHHHHTTS----SSEE-EEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred             cCC-CeEEEeCCCC-CH-HHHHHHHHC----CCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence            356 8999999997 43 333333321    1334 5677777666665553    23210000011221222    568


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEE
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                      |+|++..+... .++++++...||||-.++.
T Consensus        96 D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~  125 (178)
T 3hm2_A           96 DVIFIGGGLTA-PGVFAAAWKRLPVGGRLVA  125 (178)
T ss_dssp             SEEEECC-TTC-TTHHHHHHHTCCTTCEEEE
T ss_pred             CEEEECCcccH-HHHHHHHHHhcCCCCEEEE
Confidence            99998776655 5688899999999887663

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=91.81  E-value=0.57  Score=43.94  Aligned_cols=74  Identities=11%  Similarity=0.076  Sum_probs=50.3

Q ss_pred             cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021356          106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      ..|+| .+|++||=   +++..|++..+...     .|+++.+...++-. ....+.+.|...+  ...+++|+++++|+
T Consensus       145 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~g~~~~--~~~d~~eav~~aDv  216 (299)
T 1pg5_A          145 NTIDG-LVFALLGDLKYARTVNSLLRILTRF-----RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDV  216 (299)
T ss_dssp             SCSTT-CEEEEEECCSSCHHHHHHHHHGGGS-----CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSE
T ss_pred             CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCchhcCCHHHHHHcCCeEE--EeCCHHHHhcCCCE
Confidence            46889 99999997   58999999988664     27887776544221 1112334453210  14588999999999


Q ss_pred             EEEccc
Q 021356          182 VLLLIS  187 (313)
Q Consensus       182 IiLavP  187 (313)
                      |....=
T Consensus       217 vyt~~~  222 (299)
T 1pg5_A          217 LYVTRI  222 (299)
T ss_dssp             EEEECC
T ss_pred             EEeCCc
Confidence            988664

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.75  E-value=0.92  Score=44.66  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             ccCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCccc--HHHHHH-CC-------ceecC
Q 021356          107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN  166 (313)
Q Consensus       107 ~l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~-~G-------~~~~~  166 (313)
                      .++| ++|+|.|+-          +-...+++.|.+.      |.+|.+.+..-...  .....+ .+       +..  
T Consensus       332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~--  402 (481)
T 2o3j_A          332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV--  402 (481)
T ss_dssp             CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred             ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence            5789 999999973          4556677777777      88876655432111  111211 11       221  


Q ss_pred             CCcCCHHhhhccCCEEEEcccchhHHHH-HHHHHhcCCCCcEEEEecCch
Q 021356          167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       167 ~~~~~~~e~i~~ADvIiLavP~~a~~~v-i~ei~~~mk~gaiLid~~Gv~  215 (313)
                        +.+.+|+++++|+|+|++.-....++ ++++...|+...+|+|..++.
T Consensus       403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~  450 (481)
T 2o3j_A          403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLIL  450 (481)
T ss_dssp             --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCS
T ss_pred             --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCC
Confidence              24678899999999999998877653 567777888877899998874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=91.73  E-value=0.54  Score=43.10  Aligned_cols=92  Identities=17%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhhc-----cCC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETIS-----GSD  180 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~~~e~i~-----~AD  180 (313)
                      +| +++.|+|. |.+|.+.++.++..      |.+|++..++ ++..+.+++.|.... +... .+..+.+.     ..|
T Consensus       145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence            57 89999997 99999999999998      9987665543 444555666664210 1111 23333332     478


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++..    ..+++..+.++++-.++.++
T Consensus       217 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          217 CYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence            88888764    23566667777776666554

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=91.68  E-value=0.76  Score=41.42  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=43.8

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccH---HHHHHCC-ceecCCCcCC---HHhhhcc--C
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S  179 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~---~~A~~~G-~~~~~~~~~~---~~e~i~~--A  179 (313)
                      ||+|.|.| .|.+|..+++.|.+.      |++|++..|.. ....   +.....+ +........+   +++++++  .
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   74 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP   74 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence            57899999 699999999999998      99887766532 1111   1111112 2100011223   3457777  9


Q ss_pred             CEEEEccc
Q 021356          180 DLVLLLIS  187 (313)
Q Consensus       180 DvIiLavP  187 (313)
                      |+||-+..
T Consensus        75 d~vih~A~   82 (347)
T 1orr_A           75 DSCFHLAG   82 (347)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99998764

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=91.65  E-value=0.41  Score=46.70  Aligned_cols=71  Identities=17%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             ccCCCCEEEEEcc-----c---chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021356          107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG  170 (313)
Q Consensus       107 ~l~GikkIgIIG~-----G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~  170 (313)
                      .|+| ++|+|||.     |   ++..|++..+...      |+++.+...++    ++..+.    +.+.|...+  .+.
T Consensus       188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~~  258 (399)
T 3q98_A          188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QVT  258 (399)
T ss_dssp             GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EES
T ss_pred             ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence            4788 99999974     4   6889999999888      99987775542    222222    334553210  146


Q ss_pred             CHHhhhccCCEEEEcc
Q 021356          171 DIYETISGSDLVLLLI  186 (313)
Q Consensus       171 ~~~e~i~~ADvIiLav  186 (313)
                      +++|++++||+|..-+
T Consensus       259 d~~eav~~aDvVytd~  274 (399)
T 3q98_A          259 SMEEAFKDADIVYPKS  274 (399)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEecC
Confidence            8999999999998865

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=91.62  E-value=0.93  Score=42.16  Aligned_cols=94  Identities=10%  Similarity=0.046  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc---cHHHHHHCCceec-CCC---cCCHHhhhc---
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEE-NGT---LGDIYETIS---  177 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~-~~~---~~~~~e~i~---  177 (313)
                      +| .+|.|+|. |.+|...++.++..      |.++++..+.++.   ..+.+++.|...- +..   .....++..   
T Consensus       167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~  239 (357)
T 1zsy_A          167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMP  239 (357)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSC
T ss_pred             CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCC
Confidence            57 89999998 99999999999998      9887766655432   2456777885320 000   001122222   


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ..|+|+=++.....    .+....++++-.++..++
T Consensus       240 ~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          240 QPRLALNCVGGKSS----TELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             CCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred             CceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence            37999988874332    345677888777766653

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=91.54  E-value=0.52  Score=41.95  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhh--ccCCEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI--SGSDLV  182 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i--~~ADvI  182 (313)
                      +| ++|.-||+|. | .++..+.+.      |.+ +++.+.++...+.+++    .|... .-...+..+.+  ...|+|
T Consensus       120 ~~-~~VLDiGcG~-G-~l~~~la~~------g~~-v~gvDi~~~~v~~a~~n~~~~~~~v-~~~~~d~~~~~~~~~fD~V  188 (254)
T 2nxc_A          120 PG-DKVLDLGTGS-G-VLAIAAEKL------GGK-ALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPFGPFDLL  188 (254)
T ss_dssp             TT-CEEEEETCTT-S-HHHHHHHHT------TCE-EEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGGGCCEEEE
T ss_pred             CC-CEEEEecCCC-c-HHHHHHHHh------CCe-EEEEECCHHHHHHHHHHHHHcCCcE-EEEECChhhcCcCCCCCEE
Confidence            57 8999999999 3 344556566      665 5677777766655554    34210 00123555533  357999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +...+.....++++++...||||-.++.+
T Consensus       189 v~n~~~~~~~~~l~~~~~~LkpgG~lils  217 (254)
T 2nxc_A          189 VANLYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             EEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            98776666667888999999998876643

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=91.51  E-value=0.11  Score=51.04  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .+|+| ++|+|.|+|++|...++.|.+.      |.+|+...+.+
T Consensus       208 ~~l~g-~~vaVqG~GnVG~~~a~~L~~~------GakvVavsD~~  245 (421)
T 2yfq_A          208 IKMED-AKIAVQGFGNVGTFTVKNIERQ------GGKVCAIAEWD  245 (421)
T ss_dssp             CCGGG-SCEEEECCSHHHHHHHHHHHHT------TCCEEECCBCC
T ss_pred             CCccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEEecC
Confidence            47899 9999999999999999999998      98876333443

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=91.49  E-value=0.2  Score=49.99  Aligned_cols=73  Identities=22%  Similarity=0.198  Sum_probs=41.9

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e-~i~~ADvIiLa  185 (313)
                      .++| +++.|+|.|-+|.+++..|.+.      |.+|++..|..++..+.+.+.+....  ...+.++ .....|+||.+
T Consensus       361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~~~~~--~~~dl~~~~~~~~DilVN~  431 (523)
T 2o7s_A          361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIGGKAL--SLTDLDNYHPEDGMVLANT  431 (523)
T ss_dssp             ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTTC-CE--ETTTTTTC--CCSEEEEEC
T ss_pred             ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCcee--eHHHhhhccccCceEEEEC
Confidence            5678 8999999999999999999998      98888887764444444444432100  0112222 12236777777


Q ss_pred             ccc
Q 021356          186 ISD  188 (313)
Q Consensus       186 vP~  188 (313)
                      ++.
T Consensus       432 agv  434 (523)
T 2o7s_A          432 TSM  434 (523)
T ss_dssp             SST
T ss_pred             CCC
Confidence            664

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=91.46  E-value=0.34  Score=46.64  Aligned_cols=70  Identities=10%  Similarity=0.034  Sum_probs=48.8

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhhc
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS  177 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~i~  177 (313)
                      .|+| .+|++|| .+++..|++..+...      |+++.+...++    +...+.    +.+.|...+  ...+++ +++
T Consensus       150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~  219 (355)
T 4a8p_A          150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE  219 (355)
T ss_dssp             CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred             CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence            6888 9999999 568999999999998      99987765432    112222    334453210  145788 999


Q ss_pred             cCCEEEEcc
Q 021356          178 GSDLVLLLI  186 (313)
Q Consensus       178 ~ADvIiLav  186 (313)
                      ++|+|..-+
T Consensus       220 ~aDVVytd~  228 (355)
T 4a8p_A          220 GADFLYTDV  228 (355)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEecc
Confidence            999999743

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=91.45  E-value=1.2  Score=41.63  Aligned_cols=94  Identities=15%  Similarity=0.153  Sum_probs=61.2

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh---ccCCEEE
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i---~~ADvIi  183 (313)
                      +| .+|.|+| .|.+|...++.++..      |.+|+... . ++..+.+++.|...- +....+..+.+   ...|+|+
T Consensus       183 ~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          183 TG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVC-S-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEe-C-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEE
Confidence            57 8999999 799999999999998      98876544 3 355677788875310 11111333322   3578888


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      -++....  ..++.....++++-.++.+++
T Consensus       254 d~~g~~~--~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          254 DNVGGST--ETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             ESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred             ECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence            8876542  124455566777776666554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=91.45  E-value=1.6  Score=40.50  Aligned_cols=73  Identities=19%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH--CCceecCCC-cC---CHHhhhccCCE
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGT-LG---DIYETISGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~~~~-~~---~~~e~i~~ADv  181 (313)
                      .+ |+|.|.| .|.+|.++++.|.+.      |++|++..|+.+........  .++...... ..   ++.++++++|+
T Consensus         4 ~~-~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~   76 (352)
T 1xgk_A            4 QK-KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHL   76 (352)
T ss_dssp             CC-CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSE
T ss_pred             CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCE
Confidence            35 8899999 599999999999988      98887777654432111111  132110111 22   24567899999


Q ss_pred             EEEcccc
Q 021356          182 VLLLISD  188 (313)
Q Consensus       182 IiLavP~  188 (313)
                      ||.+...
T Consensus        77 Vi~~a~~   83 (352)
T 1xgk_A           77 AFINTTS   83 (352)
T ss_dssp             EEECCCS
T ss_pred             EEEcCCC
Confidence            9976643

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=91.42  E-value=0.69  Score=44.81  Aligned_cols=95  Identities=19%  Similarity=0.152  Sum_probs=52.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHC----C------------ceecCC------C
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAA----G------------FTEENG------T  168 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~----G------------~~~~~~------~  168 (313)
                      .+|||+|+|.||..+.+.|...-   +.+++++..++. +.+......+.    |            +.. ++      .
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~---~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v-~g~~i~v~~   78 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQ---NTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITV-NGKTMKIVC   78 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCS---SCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEE-TTEEEEEEC
T ss_pred             cEEEEECcCHHHHHHHHHHhcCC---CCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEE-CCeEEEEEe
Confidence            58999999999999999987640   124675444432 22211111111    0            100 00      0


Q ss_pred             cCCHHhhh---ccCCEEEEcccchhHHHHHHHHHhcCCCCc--EEEEecC
Q 021356          169 LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG  213 (313)
Q Consensus       169 ~~~~~e~i---~~ADvIiLavP~~a~~~vi~ei~~~mk~ga--iLid~~G  213 (313)
                      ..+++++-   .++|+|+.+++.....+....+++   .|+  +|++.++
T Consensus        79 ~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~---aGakkVVIs~ps  125 (380)
T 2d2i_A           79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQ---AGAKKVLITAPG  125 (380)
T ss_dssp             CSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHH---TTCSEEEESSCC
T ss_pred             cCChHHCCcccCCCCEEEECCCccccHHHHHHHHH---cCCcEEEEcCCC
Confidence            12333432   279999999998777766665443   343  3555543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.29  E-value=0.71  Score=40.64  Aligned_cols=39  Identities=15%  Similarity=0.099  Sum_probs=33.0

Q ss_pred             ccccCCCCEEEEEcc-cc-hHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          105 PDAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       105 ~~~l~GikkIgIIG~-G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ...|+| +++-|.|. |. ||.++++.|.+.      |.+|++..|..
T Consensus        17 ~~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~   57 (266)
T 3o38_A           17 HGLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHE   57 (266)
T ss_dssp             CSTTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             ccCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCH
Confidence            356889 99999998 85 999999999999      99987776653

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=91.25  E-value=1.6  Score=42.22  Aligned_cols=69  Identities=20%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc-----EEEEEe-cCCc--c-cHHHHH--HCCce---ecCCCcCCHHhhh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGL-RKGS--R-SFAEAR--AAGFT---EENGTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~-----~Vivg~-r~~~--~-s~~~A~--~~G~~---~~~~~~~~~~e~i  176 (313)
                      .||+||| .|.+|.+++..|...      ++     .+.+.+ +.+.  + ....+.  ..+..   ..-....+..+.+
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~  106 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF  106 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence            8999999 799999999999876      44     143332 2211  0 111222  22211   0000123567889


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      ++||+||++-
T Consensus       107 ~daDvVVita  116 (375)
T 7mdh_A          107 EDVDWALLIG  116 (375)
T ss_dssp             TTCSEEEECC
T ss_pred             CCCCEEEEcC
Confidence            9999999964

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.16  E-value=0.45  Score=43.96  Aligned_cols=92  Identities=17%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021356          109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~AD  180 (313)
                      +| ++|.|+|.| .+|...++.++..      |.+|+...++ ++..+.+++.|...- +....+..+.+      ...|
T Consensus       144 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          144 RN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRN-NKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCc
Confidence            57 999999998 8999999999998      9987665544 455667777775310 11112333322      2589


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++......    +....++++-.++.++
T Consensus       216 vvid~~g~~~~~----~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          216 AAIDSIGGPDGN----ELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             EEEESSCHHHHH----HHHHTEEEEEEEEECC
T ss_pred             EEEECCCChhHH----HHHHHhcCCCEEEEEe
Confidence            999988755432    2335677877766554

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=91.10  E-value=0.29  Score=46.25  Aligned_cols=69  Identities=7%  Similarity=-0.070  Sum_probs=41.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc--E-----EEEEecCCc--ccHHHHHH--C-C--ceecCCCcCCHHhhh
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-----VKVGLRKGS--RSFAEARA--A-G--FTEENGTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~-----Vivg~r~~~--~s~~~A~~--~-G--~~~~~~~~~~~~e~i  176 (313)
                      +||.|+| .|.+|.+++..|...      ++  +     +.+.+....  .....+.+  . .  +...-....+..+.+
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~------~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~   77 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNG------SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAF   77 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC------CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHh
Confidence            6899999 899999999999876      44  2     443333211  11112221  1 1  110000123567889


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      ++||+||++.
T Consensus        78 ~daDvVvitA   87 (333)
T 5mdh_A           78 KDLDVAILVG   87 (333)
T ss_dssp             TTCSEEEECC
T ss_pred             CCCCEEEEeC
Confidence            9999999975

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=91.07  E-value=1.3  Score=39.09  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----CCceec-CCCcCCHHhhhc----
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEE-NGTLGDIYETIS----  177 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~-~~~~~~~~e~i~----  177 (313)
                      ..++ ++|.-||+|. |......++.. .   .+.+ +++.+.++...+.|++    .|+.+. .-...+..+.+.    
T Consensus        61 ~~~~-~~VLdiG~G~-G~~~~~la~~~-~---~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~  133 (248)
T 3tfw_A           61 LTQA-KRILEIGTLG-GYSTIWMAREL-P---ADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE  133 (248)
T ss_dssp             HHTC-SEEEEECCTT-SHHHHHHHTTS-C---TTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS
T ss_pred             hcCC-CEEEEecCCc-hHHHHHHHHhC-C---CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC
Confidence            3467 9999999997 44333333332 1   0234 4677776655555443    243200 001245555433    


Q ss_pred             --cCCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          178 --GSDLVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       178 --~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                        ..|+|++..+......+++++...||||-+|+
T Consensus       134 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv  167 (248)
T 3tfw_A          134 CPAFDLIFIDADKPNNPHYLRWALRYSRPGTLII  167 (248)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEE
T ss_pred             CCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEE
Confidence              68999998887777789999999999998765

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=91.06  E-value=0.24  Score=45.90  Aligned_cols=69  Identities=12%  Similarity=0.085  Sum_probs=41.8

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCc-c-cHHHHH--HC---CceecCCCcCCHHhhh
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS-R-SFAEAR--AA---GFTEENGTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~-~-s~~~A~--~~---G~~~~~~~~~~~~e~i  176 (313)
                      +||.|+|. |.+|..++..|...      |+       +|++.++... . ....+.  ..   .+...-....+..+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~   78 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF   78 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHh
Confidence            78999996 99999999999887      75       5655443221 1 111111  11   1110000024667889


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      +++|+||.+.
T Consensus        79 ~~~D~Vih~A   88 (327)
T 1y7t_A           79 KDADYALLVG   88 (327)
T ss_dssp             TTCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            9999999864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.04  E-value=0.37  Score=44.88  Aligned_cols=92  Identities=18%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             CCCCEEEEE-cccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021356          109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL  181 (313)
Q Consensus       109 ~GikkIgII-G~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~ADv  181 (313)
                      +| ++|.|+ |.|.+|.+.++.++..      |.+|+...++ ++..+.+++.|...- +....+..+.+.     ..|+
T Consensus       167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred             CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence            56 899999 6899999999999999      9987655543 455567777774310 111123333332     5899


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+-++...    .++.....++++-.++.++
T Consensus       239 vid~~g~~----~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          239 ILDMIGAA----YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             EEESCCGG----GHHHHHHTEEEEEEEEECC
T ss_pred             EEECCCHH----HHHHHHHHhccCCEEEEEE
Confidence            99988764    3455566777777666554

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.95  E-value=0.99  Score=44.76  Aligned_cols=91  Identities=11%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHh----hhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYE----TISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e----~i~~ADvIiLav  186 (313)
                      +.|.|+|+|..|..+++.|.+.      |+++++. +.+++..+.+.+. |+..-.+...+.+.    -+++||.|++ +
T Consensus       128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvi-d~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t  199 (565)
T 4gx0_A          128 GHILIFGIDPITRTLIRKLESR------NHLFVVV-TDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N  199 (565)
T ss_dssp             SCEEEESCCHHHHHHHHHTTTT------TCCEEEE-ESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred             CeEEEECCChHHHHHHHHHHHC------CCCEEEE-ECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence            6899999999999999999998      8886555 4555555666666 64321122223221    2578999988 5


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEE
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                      +++...-.+-.....+..-.++.-
T Consensus       200 ~~D~~n~~~~~~ar~~~~~~iiar  223 (565)
T 4gx0_A          200 LSDPDNANLCLTVRSLCQTPIIAV  223 (565)
T ss_dssp             SCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEE
Confidence            555443233333444443334443

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=90.83  E-value=0.37  Score=45.50  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=57.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhh------c
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI------S  177 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~-~~~---~~~~~e~i------~  177 (313)
                      +| .+|.|+|.|.+|...++.++..      | .+|+...+ +++..+.+++.|...- +..   ..+..+.+      .
T Consensus       195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          195 AG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAG-SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             BT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CC-CEEEEECcCHHHHHHHHHHHHc------CCceEEEEcC-CHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCC
Confidence            57 8999999999999999999998      9 47755544 4455677778885310 000   00111212      1


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..|+|+-++....   .+++..+.++++-.++.++
T Consensus       267 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          267 GADFILEATGDSR---ALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             CEEEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred             CCcEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence            4788888886432   3444455566665555443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=90.77  E-value=1.5  Score=43.01  Aligned_cols=63  Identities=19%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             CCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       110 GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      + |+|.|.| .|.+|..+++.|.+.      |++|++..|.....      ..+.- + ......+++.++|+||-+..
T Consensus       147 ~-m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d-~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 P-LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-D-PLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             C-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-C-TTSCCTTTTTTCSEEEECCC
T ss_pred             C-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-c-ccchhHHhcCCCCEEEECCC
Confidence            6 8999999 799999999999999      99987777764331      11111 1 11234567889999998654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=90.66  E-value=1  Score=40.01  Aligned_cols=44  Identities=9%  Similarity=-0.013  Sum_probs=33.5

Q ss_pred             CcccccccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356           99 DLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus        99 w~f~~~~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      |..+.....++| +++-|.| .|-||.++++.|.+.      |.+|++..|.
T Consensus        20 ~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~   64 (272)
T 1yb1_A           20 GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDIN   64 (272)
T ss_dssp             -----CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred             cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcC
Confidence            444444577999 9999999 679999999999998      9998776664

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=90.60  E-value=0.39  Score=47.16  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=31.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .+|+| +++.|.|.|++|...++.|.+.      |.+|+...+
T Consensus       206 ~~l~g-k~vaVqG~GnVG~~aa~~L~e~------GakVVavsD  241 (421)
T 1v9l_A          206 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD  241 (421)
T ss_dssp             SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred             CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEEC
Confidence            48999 9999999999999999999998      988763433

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=90.50  E-value=0.32  Score=44.80  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceec-CCC-cCCHHhhhc-----cC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT-LGDIYETIS-----GS  179 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~-~~~~~e~i~-----~A  179 (313)
                      +| +++.|+|. |.+|...++.++..      |.+|+...++ ++..+.++ +.|.... +.. ..+..+.+.     ..
T Consensus       155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~  226 (345)
T 2j3h_A          155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGS-KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI  226 (345)
T ss_dssp             TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred             CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence            57 99999997 99999999999998      9887655543 44455665 5664210 100 112333332     57


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+|+-++..    ..++.....++++-.++.++
T Consensus       227 d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          227 DIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             EEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             cEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence            999988864    25666777788877666554

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=90.49  E-value=1.2  Score=39.72  Aligned_cols=40  Identities=10%  Similarity=0.070  Sum_probs=32.9

Q ss_pred             cccccCCCCEEEEEcc-cc--hHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          104 LPDAFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~-G~--mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      .+..++| |++-|.|. |.  ||.++|+.|.+.      |.+|++..+..
T Consensus        20 ~M~~l~~-k~vlVTGasg~~GIG~~ia~~l~~~------G~~V~~~~r~~   62 (280)
T 3nrc_A           20 HMGFLAG-KKILITGLLSNKSIAYGIAKAMHRE------GAELAFTYVGQ   62 (280)
T ss_dssp             --CTTTT-CEEEECCCCSTTCHHHHHHHHHHHT------TCEEEEEECTT
T ss_pred             cccccCC-CEEEEECCCCCCCHHHHHHHHHHHc------CCEEEEeeCch
Confidence            4678999 99999996 56  999999999999      99987777654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=90.49  E-value=0.58  Score=41.32  Aligned_cols=38  Identities=16%  Similarity=0.098  Sum_probs=32.2

Q ss_pred             cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ..|+| |++-|.| .|-||.++++.|.+.      |.+|++..+..
T Consensus         4 ~~l~~-k~vlVTGas~gIG~~ia~~l~~~------G~~V~~~~r~~   42 (259)
T 4e6p_A            4 KRLEG-KSALITGSARGIGRAFAEAYVRE------GATVAIADIDI   42 (259)
T ss_dssp             CTTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             ccCCC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence            46789 9999999 578999999999999      99987776653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=90.46  E-value=0.5  Score=41.56  Aligned_cols=38  Identities=24%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ..|+| |++-|.|. |-||.++++.|.+.      |.+|++..++.
T Consensus         2 ~~l~g-k~vlVTGas~gIG~a~a~~l~~~------G~~V~~~~r~~   40 (247)
T 3rwb_A            2 ERLAG-KTALVTGAAQGIGKAIAARLAAD------GATVIVSDINA   40 (247)
T ss_dssp             CTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSCH
T ss_pred             CCcCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence            46889 99999995 68999999999999      99987766553

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=90.46  E-value=1.6  Score=38.60  Aligned_cols=92  Identities=11%  Similarity=0.107  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHhhhccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYETISGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~e~i~~ADvIi  183 (313)
                      +| .+|--||+|. |.-....++..      |.+ +++.+.++...+.+++.    |.... .-...+..+.-...|+|+
T Consensus        64 ~~-~~vLDiGcG~-G~~~~~l~~~~------~~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~  134 (287)
T 1kpg_A           64 PG-MTLLDVGCGW-GATMMRAVEKY------DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIV  134 (287)
T ss_dssp             TT-CEEEEETCTT-SHHHHHHHHHH------CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEE
T ss_pred             Cc-CEEEEECCcc-cHHHHHHHHHc------CCE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEE
Confidence            56 8999999998 33332333355      665 46777766555555442    21100 000234444436789998


Q ss_pred             Ec-----ccchhHHHHHHHHHhcCCCCcEEE
Q 021356          184 LL-----ISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       184 La-----vP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      ..     +++.....+++++...||||-.++
T Consensus       135 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~  165 (287)
T 1kpg_A          135 SIGAFEHFGHERYDAFFSLAHRLLPADGVML  165 (287)
T ss_dssp             EESCGGGTCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred             EeCchhhcChHHHHHHHHHHHHhcCCCCEEE
Confidence            75     454556678999999999987655

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=90.39  E-value=0.78  Score=43.42  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC------------------C-cccH---HHHHHC-
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------G-SRSF---AEARAA-  160 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~------------------~-~~s~---~~A~~~-  160 (313)
                      ...|.. .+|.|||+|-+|..++++|...      |+ ++.+.+..                  + .+..   +...+. 
T Consensus        31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln  103 (346)
T 1y8q_A           31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN  103 (346)
T ss_dssp             HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred             HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence            467788 9999999999999999999998      87 45454321                  0 0111   111111 


Q ss_pred             -Ccee--cCCCc-CCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021356          161 -GFTE--ENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIFS  200 (313)
Q Consensus       161 -G~~~--~~~~~-~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~  200 (313)
                       ++..  ..... ...++.+++.|+||.++-.......+++...
T Consensus       104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~  147 (346)
T 1y8q_A          104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH  147 (346)
T ss_dssp             TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence             1110  00001 1236788999999998876666666776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1qmga2	226	c.2.1.6 (A:82-307) Class II ketol-acid reductoisom	3e-95
d1np3a2	182	c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer	1e-42
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	0.004

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  279 bits (715), Expect = 3e-95
 Identities = 189/226 (83%), Positives = 210/226 (92%)

Query: 68  TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQA 127
           +    DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1   SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60

Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
           QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61  QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120

Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247
           D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180

Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
           YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  143 bits (361), Expect = 1e-42
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 20/175 (11%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++ +IG+GSQG A A NL+D      S + V VGLR GS + A+A A G         D+
Sbjct: 18  KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66

Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
              ++ +D+V++L  D  Q   Y++     +K  + L  +HGF + + Q        ++ 
Sbjct: 67  KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQV---VPRADLD 123

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
           VI + PK  G +VR  +V+G       I    A++QD  G A NVAL ++  +G 
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
             V+G G+ G A A  L                +K    +G+        AG    +   
Sbjct: 4   YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63

Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
            DI   +  +D++L+++     A     I S +    ++ L+ G   G L+
Sbjct: 64  SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALE 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	100.0
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	100.0
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.89
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.87
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.84
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.8
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.71
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.61
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.55
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.54
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.52
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.51
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.51
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.5
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.49
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.44
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.42
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.41
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.38
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.31
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.29
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.26
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.23
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.12
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.1
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.04
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.94
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.82
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.78
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.7
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	98.69
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.66
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.37
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.1
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.09
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.01
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.93
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.87
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.82
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.77
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.74
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.74
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.64
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.63
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.6
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.52
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.5
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.49
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.47
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.43
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.37
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.35
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.32
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.28
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.27
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.24
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.22
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.19
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.17
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.17
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.16
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.14
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.07
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.05
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.04
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.96
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.96
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.96
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.95
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.92
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.91
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.89
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.85
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.85
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.76
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.73
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.7
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.67
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.65
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.64
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.63
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.63
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.56
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.55
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.55
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.53
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.53
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.49
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.47
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.4
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.35
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.34
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.32
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.25
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.21
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.17
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.1
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.06
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.99
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.95
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.94
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.92
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.91
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.88
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.86
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.7
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.67
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.62
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.62
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.59
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.51
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.49
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.48
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.44
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.41
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.39
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.34
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.26
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.23
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.21
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.2
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.88
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.87
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.75
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.74
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.52
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	94.46
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.26
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.13
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.85
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.83
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.73
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.63
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.63
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.51
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	93.37
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.23
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.21
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.12
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.1
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.03
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	93.01
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.95
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.93
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	92.87
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.78
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.73
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.71
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.7
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.68
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.66
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.64
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.52
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.51
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.42
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.29
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.23
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	92.23
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	91.96
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.88
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.82
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.74
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.73
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.65
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.58
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	91.58
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.55
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.52
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	91.34
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.33
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.27
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.26
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.16
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.13
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.08
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.02
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.97
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.93
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.85
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.79
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	90.73
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.63
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.63
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.54
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.11
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.03
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	90.01
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.99
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.93
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.64
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.56
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.42
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	89.39
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	89.28
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	89.17
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.12
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.03
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	88.99
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.95
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	88.87
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.78
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.76
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	88.71
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.64
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.4
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	88.28
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	88.07
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.92
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	87.79
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.78
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.74
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	87.64
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.59
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	87.08
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.07
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.04
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	86.74
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	86.38
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.37
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.23
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.16
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.15
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	85.49
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.42
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	85.36
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	85.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.89
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.85
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	84.77
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.36
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.05
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	83.82
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	83.81
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.59
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.58
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.51
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.16
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	82.92
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	82.73
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	82.65
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	82.35
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	82.23
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	81.6
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	81.46
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	81.44
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.34
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.18
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	80.56
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	80.23

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.3e-47  Score=343.59  Aligned_cols=225  Identities=84%  Similarity=1.312  Sum_probs=208.3

Q ss_pred             ccccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356           69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus        69 ~~~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      +.+++||+++|++++++|.+.+|+|+++|||.|+++.+.|+|+|+|+|||||+||.++|+|||++-.+.++|.+|+++.|
T Consensus         2 ~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr   81 (226)
T d1qmga2           2 ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLR   81 (226)
T ss_dssp             CSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeC
Confidence            56899999999999999999999999999999999889999999999999999999999999997333334678999999


Q ss_pred             CCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC
Q 021356          149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK  228 (313)
Q Consensus       149 ~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~  228 (313)
                      ++++++++|++.|+...+.++.+.+|++++||+|++++||..+.++++++.++||+|+.|..+|||.+.+.+.....+|+
T Consensus        82 ~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~  161 (226)
T d1qmga2          82 KGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK  161 (226)
T ss_dssp             TTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCT
T ss_pred             CCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCC
Confidence            99999999999999754445568899999999999999999999999999999999999999999998776654456789


Q ss_pred             CccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecC
Q 021356          229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT  293 (313)
Q Consensus       229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT  293 (313)
                      +++|+++.|++||+.+|+.|++|+.++|.|.+|+|+++||.++++.+++++|+.++|+.++++||
T Consensus       162 dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt  226 (226)
T d1qmga2         162 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT  226 (226)
T ss_dssp             TSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred             CceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999998

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.2e-33  Score=244.83  Aligned_cols=169  Identities=36%  Similarity=0.588  Sum_probs=158.9

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      ...|++ |+|+|||+|++|.+.|+|||++      |++|+++.|++++++++|++.||.     +.+.+|++++||+|++
T Consensus        11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~   78 (182)
T d1np3a2          11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI   78 (182)
T ss_dssp             HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred             hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence            467889 9999999999999999999999      999999999999999999999998     4699999999999999


Q ss_pred             cccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       185 avP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ++||..+.++++ ++.++||+|+.|..+|||.+.+-.   ..+|++++++.+.|++||+.+|++|++|     .|.++++
T Consensus        79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~~---I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~  150 (182)
T d1np3a2          79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQ---VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI  150 (182)
T ss_dssp             CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTTS---SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred             ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEeee---eecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence            999999999997 799999999999999999985543   4778899999999999999999999987     7999999


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCCc--eeecC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSPF--TFATT  293 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~~--~~~tT  293 (313)
                      +++||.++++.+++++++.++|+.|  +++||
T Consensus       151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT  182 (182)
T d1np3a2         151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT  182 (182)
T ss_dssp             EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred             EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence            9999999999999999999999987  78887

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.89  E-value=1.7e-23  Score=177.20  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=126.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHh-hhccCCEEEEcccc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD  188 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e-~i~~ADvIiLavP~  188 (313)
                      ||+|+|||+|+||.++|++|++.      |+. .+++++++++..+.+++.|+.++  ...+.++ ...++|+|++++|+
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~dlIila~p~   72 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINPESISKAVDLGIIDE--GTTSIAKVEDFSPDFVMLSSPV   72 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHTTSCSE--EESCGGGGGGTCCSEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEEECChHHHHHHHHhhcchh--hhhhhhhhhccccccccccCCc
Confidence            68899999999999999999998      863 35677888888899999998642  2234433 44589999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      +...++++++.++++++++|+|+++++....+.....++  .+||+.|| +++.+ ...++.+++..+.|.++++||+.+
T Consensus        73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~--~~~i~~hP-m~G~e-~sG~~~a~~~Lf~g~~~il~p~~~  148 (171)
T d2g5ca2          73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHP-IAGTE-KSGVEYSLDNLYEGKKVILTPTKK  148 (171)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEE-ECCCS-CCSGGGCCSSTTTTCEEEECCCSS
T ss_pred             hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc--cccccccc-ccccc-cccHHHHHHHhhCCCeEEEecCCC
Confidence            999999999999999999999999975322221111223  37999999 33332 112333444455678999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 021356          269 VDGRATNVALGWSVALGSP  287 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG~~  287 (313)
                      ++.+.++.++.||+.+|++
T Consensus       149 ~~~~~~~~v~~~~~~lG~~  167 (171)
T d2g5ca2         149 TDKKRLKLVKRVWEDVGGV  167 (171)
T ss_dssp             SCHHHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHcCCE
Confidence            9999999999999999953

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.87  E-value=3.3e-22  Score=168.97  Aligned_cols=161  Identities=16%  Similarity=0.173  Sum_probs=122.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |||||||+|+||.++|++|++.      |++|. +++++++..+.+.+.|.+++   ..+..+++++||+|||++|+...
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~-~~d~~~~~~~~a~~~~~~~~---~~~~~~~~~~~DiIilavp~~~~   70 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR------GHYLI-GVSRQQSTCEKAVERQLVDE---AGQDLSLLQTAKIIFLCTPIQLI   70 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHHTTSCSE---EESCGGGGTTCSEEEECSCHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC------CCEEE-EEECCchHHHHHHHhhccce---eeeecccccccccccccCcHhhh
Confidence            7899999999999999999999      99875 45666677888899887642   33555789999999999999998


Q ss_pred             HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCH
Q 021356          192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG  271 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~  271 (313)
                      .++++++.+.++++++|+++++++...........   .+++..||.. +++. ..+..+......+.++++++....++
T Consensus        71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~---~~~~~~h~~~-~~~~-~g~~~a~~~l~~~~~~il~~~~~~~~  145 (165)
T d2f1ka2          71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW---SGFIGGHPMA-GTAA-QGIDGAEENLFVNAPYVLTPTEYTDP  145 (165)
T ss_dssp             HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS---TTCEEEEECC-CCSC-SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred             hhhhhhhhhhcccccceeeccccchHHHHHHHHhh---cccccceeee-cccc-cchhhhcccccCCCeEEEEeCCCCCH
Confidence            99999999999999999999887532221100121   3578899943 2221 01111222222367899999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 021356          272 RATNVALGWSVALGSP  287 (313)
Q Consensus       272 ea~e~a~~L~~alG~~  287 (313)
                      ++++.++.+|+.+|++
T Consensus       146 ~~~~~v~~l~~~lG~~  161 (165)
T d2f1ka2         146 EQLACLRSVLEPLGVK  161 (165)
T ss_dssp             HHHHHHHHHHGGGTCE
T ss_pred             HHHHHHHHHHHHhCCE
Confidence            9999999999999965

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.84  E-value=5e-21  Score=161.33  Aligned_cols=145  Identities=16%  Similarity=0.127  Sum_probs=118.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |||||||+|+||.+++++|.+.      |.+++++.|+.++..+.+.+.|+..    ..+++|++++||+|+|++||+..
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~   70 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF   70 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred             CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence            6899999999999999999998      9998888776555555566677763    56899999999999999999876


Q ss_pred             HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021356          192 ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD  270 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~  270 (313)
                      .+++    +.++++++|+ .++|+++..+++   .++.+.+++++|||+|...       |     .|.+. ++....++
T Consensus        71 ~~vl----~~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v-------~-----~g~~~-~~~~~~~~  130 (152)
T d2ahra2          71 ETVL----KPLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI-------L-----QSSTA-LTGNALVS  130 (152)
T ss_dssp             HHHH----TTSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG-------T-----CEEEE-EEECTTCC
T ss_pred             HHHh----hhcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc-------C-----ccceE-EEeCCCCC
Confidence            5554    5577888776 678998877776   4566789999999998876       3     45666 77778889


Q ss_pred             HHHHHHHHHHHHHcCC
Q 021356          271 GRATNVALGWSVALGS  286 (313)
Q Consensus       271 ~ea~e~a~~L~~alG~  286 (313)
                      ++..+.++.+++.+|.
T Consensus       131 ~~~~~~v~~l~~~~G~  146 (152)
T d2ahra2         131 QELQARVRDLTDSFGS  146 (152)
T ss_dssp             HHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999994

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.80  E-value=4.6e-20  Score=154.65  Aligned_cols=144  Identities=15%  Similarity=0.241  Sum_probs=111.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |+|||||+|+||.+++++|.+.      | +++.+.+|+.++..+.+.+.|+..    ..+. +.++++|+|||++||+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~   69 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD   69 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence            7899999999999999999887      6 677666555434344555677753    2333 45788999999999987


Q ss_pred             HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCC
Q 021356          191 QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV  269 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~  269 (313)
                      ..++++++.+   .+++|+ .++|+++..+++   .++...+++++|||+|...       +     .|.+. ++...+.
T Consensus        70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~-------~-----~g~t~-~~~~~~~  130 (152)
T d1yqga2          70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI-------G-----LGVSG-MYAEAEV  130 (152)
T ss_dssp             HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG-------T-----CEEEE-EECCTTS
T ss_pred             HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh-------c-----CCcEE-EEeCCCC
Confidence            7777666542   356655 779999888876   5666778999999999876       3     46776 7777788


Q ss_pred             CHHHHHHHHHHHHHcC
Q 021356          270 DGRATNVALGWSVALG  285 (313)
Q Consensus       270 ~~ea~e~a~~L~~alG  285 (313)
                      +++..+.++.||+.+|
T Consensus       131 ~~~~~~~v~~l~~~~G  146 (152)
T d1yqga2         131 SETDRRIADRIMKSVG  146 (152)
T ss_dssp             CHHHHHHHHHHHHTTE
T ss_pred             CHHHHHHHHHHHHhCC
Confidence            8999999999999999

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=6.2e-17  Score=134.57  Aligned_cols=143  Identities=16%  Similarity=0.132  Sum_probs=108.7

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      |++|+||| +|+||+++|++|++.      |++|.+.++....                  ..++.++++|++++++|+.
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~   64 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN   64 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence            48999999 999999999999999      9998776654221                  3456788999999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCC
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV  269 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~  269 (313)
                      +..+++.++.++++++++++|+++++....+......+  .+||+.|| ..+++.      +   ...|.+.++++..+ 
T Consensus        65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP-~~Gp~~------~---~~~g~~~v~~~g~~-  131 (152)
T d2pv7a2          65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHP-MFGADI------A---SMAKQVVVRCDGRF-  131 (152)
T ss_dssp             GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEE-CSCTTC------S---CCTTCEEEEEEEEC-
T ss_pred             hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecc-cCCCcc------c---ccCCcEEEEecCCC-
Confidence            99999999999999999999999986432221111333  36999999 444441      1   01356777777665 


Q ss_pred             CHHHHHHHHHHHHHcCCCceeec
Q 021356          270 DGRATNVALGWSVALGSPFTFAT  292 (313)
Q Consensus       270 ~~ea~e~a~~L~~alG~~~~~~t  292 (313)
                       .++.+.++.+|+.+| .++++|
T Consensus       132 -~~~~~~~~~ll~~~G-a~v~et  152 (152)
T d2pv7a2         132 -PERYEWLLEQIQIWG-AKIYQT  152 (152)
T ss_dssp             -GGGTHHHHHHHHHTT-CEEEEC
T ss_pred             -HHHHHHHHHHHHHhC-CEEEeC
Confidence             577899999999999 556654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=2.6e-15  Score=126.40  Aligned_cols=148  Identities=17%  Similarity=0.209  Sum_probs=107.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      |||||||+|+||.++|++|.+.      |++|++++ ++++..+...+.|...    ..+..|++++||+|++++|+...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d-~~~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~   69 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSD-RNPEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH   69 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHC------CCeEEEEe-CCcchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence            6899999999999999999999      99986655 4455566777777764    56899999999999999998777


Q ss_pred             HH-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021356          192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA  264 (313)
Q Consensus       192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit  264 (313)
                      .+ ++   +.+.+.+++|++|+|.+.....   .+.+  .....+++|+.....+ ++.   .-+.|       .-. +.
T Consensus        70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~g-g~~---~a~~g-------~l~-~~  135 (161)
T d1vpda2          70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSG-GEP---KAIDG-------TLS-VM  135 (161)
T ss_dssp             HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEES-HHH---HHHHT-------CEE-EE
T ss_pred             HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccC-Chh---HHhcC-------CeE-EE
Confidence            65 65   3588999999999998876421   2211  1224578888864433 111   11223       233 44


Q ss_pred             eccCCCHHHHHHHHHHHHHcCC
Q 021356          265 VHQDVDGRATNVALGWSVALGS  286 (313)
Q Consensus       265 p~~d~~~ea~e~a~~L~~alG~  286 (313)
                      +..+  +++.+.++.+++.+|.
T Consensus       136 ~gG~--~~~~~~~~~il~~~~~  155 (161)
T d1vpda2         136 VGGD--KAIFDKYYDLMKAMAG  155 (161)
T ss_dssp             EESC--HHHHHHHHHHHHTTEE
T ss_pred             EcCC--HHHHHHHHHHHHHhcC
Confidence            5443  6899999999999984

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.8e-15  Score=125.24  Aligned_cols=149  Identities=13%  Similarity=0.096  Sum_probs=89.1

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD  193 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~  193 (313)
                      |||||+|+||.+++++|++.      +..+.++.|+.++..+.+.+.+..     ..+.+|+++++|+|+|++||+.+.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~   70 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT   70 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred             EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence            79999999999999998765      443346666644444555554543     4578899999999999999998877


Q ss_pred             HHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHH
Q 021356          194 NYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR  272 (313)
Q Consensus       194 vi~ei~~~mk~gaiLid~~Gv-~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~e  272 (313)
                      +++++.   +++++|+++++. ....++.        ......||..+.........       ......++...|  ++
T Consensus        71 v~~~l~---~~~~ivi~~s~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~gd--~~  130 (153)
T d2i76a2          71 VANHLN---LGDAVLVHCSGFLSSEIFKK--------SGRASIHPNFSFSSLEKALE-------MKDQIVFGLEGD--ER  130 (153)
T ss_dssp             HHTTTC---CSSCCEEECCSSSCGGGGCS--------SSEEEEEECSCC--CTTGGG-------CGGGCCEEECCC--TT
T ss_pred             HHhhhc---ccceeeeecccchhhhhhhh--------hccccceeeeecccccchhh-------hccCcEEEEeCC--HH
Confidence            766542   478899987765 3433322        22334455332221000000       111222444543  57


Q ss_pred             HHHHHHHHHHHcCCCceeecCh
Q 021356          273 ATNVALGWSVALGSPFTFATTL  294 (313)
Q Consensus       273 a~e~a~~L~~alG~~~~~~tT~  294 (313)
                      +++.++.|++.+|+ ++++..-
T Consensus       131 ~~~~~~~l~~~lG~-~~~~i~~  151 (153)
T d2i76a2         131 GLPIVKKIAEEISG-KYFVIPS  151 (153)
T ss_dssp             THHHHHHHHHHHCS-CEEECCG
T ss_pred             HHHHHHHHHHHHCC-cEEEeCC
Confidence            89999999999996 4444443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.54  E-value=3.4e-15  Score=131.23  Aligned_cols=157  Identities=17%  Similarity=0.106  Sum_probs=108.4

Q ss_pred             cccchhhhhhcCCCcccc-cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           86 LANRDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~-~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +..+++. +++|.|.+.. .-.+|.| ++|||||+|.||+.+|+.++.+      |++|++.++....   .....++. 
T Consensus        19 ~~~~~~~-~~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~-   86 (197)
T d1j4aa1          19 DKAMDEK-VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY-   86 (197)
T ss_dssp             HHHHHHH-HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-
T ss_pred             cHHHHHH-HHhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-
Confidence            4456666 7888776532 3479999 9999999999999999999999      9998665543322   22234443 


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..++++++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-.+      ..+++ +......++|...
T Consensus        87 ----~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-~~i~~a~lDV~~~  161 (197)
T d1j4aa1          87 ----VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS-GKIFGYAMDVYEG  161 (197)
T ss_dssp             ----CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTT
T ss_pred             ----eccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhc-ccchheeeecccc
Confidence                4589999999999999999998775 775 8899999999999664 5322      22222 1121223555656


Q ss_pred             ccCC----------CchhHHHHHHhcccccCCCceEEEEecc
Q 021356          236 CPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       236 hPn~----------pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +|..          |-+....++..        -|.++|||-
T Consensus       162 Ep~~~~~~~~~~~~p~~~~~~L~~~--------~nviiTPHi  195 (197)
T d1j4aa1         162 EVGIFNEDWEGKEFPDARLADLIAR--------PNVLVTPKT  195 (197)
T ss_dssp             CTTTTTSBCTTSCCSCHHHHHHHHC--------TTEEECSSC
T ss_pred             CCcccccccccccCCccchhhhhcC--------CCEEeCccc
Confidence            6643          33333445552        478889873

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.52  E-value=6.3e-15  Score=129.04  Aligned_cols=157  Identities=19%  Similarity=0.126  Sum_probs=109.1

Q ss_pred             cccchhhhhhcCCCccc--------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH
Q 021356           86 LANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA  157 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~--------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A  157 (313)
                      +..+++. +|+|+|...        ....+|.| ++|||||+|.||+.+|+.++.+      |++|+++++.....  ..
T Consensus        18 i~~~~~~-~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~   87 (193)
T d1mx3a1          18 ATWLHQA-LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VE   87 (193)
T ss_dssp             HHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HH
T ss_pred             HHHHHHH-HHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--ch
Confidence            4456667 899999543        23588999 9999999999999999999999      99987666543332  22


Q ss_pred             HHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCC
Q 021356          158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPK  228 (313)
Q Consensus       158 ~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~  228 (313)
                      ...++..    ..+++|++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-.      +..+++ +.....
T Consensus        88 ~~~~~~~----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-~~i~~a  162 (193)
T d1mx3a1          88 RALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE-GRIRGA  162 (193)
T ss_dssp             HHHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEE
T ss_pred             hhhcccc----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHc-CCceEE
Confidence            3345553    4589999999999999999998876 776 8899999999999664 532      223332 112122


Q ss_pred             CccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      ..+|...+|......  .++.        --|.++|||-
T Consensus       163 ~lDV~~~EP~~~~~~--~l~~--------~~nvi~TPHi  191 (193)
T d1mx3a1         163 ALDVHESEPFSFSQG--PLKD--------APNLICTPHA  191 (193)
T ss_dssp             EESCCSSSSCCTTSS--TTTT--------CSSEEECSSC
T ss_pred             EEEcCCCCCCCCCch--hHHc--------CCCEEEcCCc
Confidence            355666666432111  1222        2478899983

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.51  E-value=9.8e-15  Score=126.53  Aligned_cols=108  Identities=11%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021356           86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE  165 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~  165 (313)
                      +..|.+. +++|.|........|.| ++|||||+|.||..+|+.++.+      |++|+++++...+       ....  
T Consensus        19 i~~~~~~-~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~--   81 (181)
T d1qp8a1          19 IIQYGEK-MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWR--   81 (181)
T ss_dssp             HHHHHHH-HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSC--
T ss_pred             HHHHHHH-HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------ccee--
Confidence            4556777 89999976655567999 9999999999999999999999      9998766554221       1111  


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH  212 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~  212 (313)
                        ...+++|++++||+|++++|.+..+. +++ +.++.||+|++|+.++
T Consensus        82 --~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1          82 --FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             --CBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             --eeechhhhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence              13488999999999999999998876 776 8999999999999765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=8.1e-14  Score=117.30  Aligned_cols=150  Identities=19%  Similarity=0.270  Sum_probs=108.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |++|||||+|+||.++|++|.+.      |++|.++++. .+..+.....|...    ..+..|+++.+|+|++++|+..
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~   69 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ   69 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECc-hhhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence            68999999999999999999999      9998766554 45556677778774    5688999999999999999887


Q ss_pred             HHH-HHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          191 QAD-NYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       191 ~~~-vi~---ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      ..+ ++.   .+.+.+++|++++|++.+...   .+.+  ....++++|+.. |-.-++.   .-++|       .-. +
T Consensus        70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~da-pv~Gg~~---~a~~G-------~l~-~  135 (162)
T d3cuma2          70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLDA-PVSGGTA---GAAAG-------TLT-F  135 (162)
T ss_dssp             HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEC-CEESCHH---HHHHT-------CEE-E
T ss_pred             hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEec-ccccCcc---ccccC-------CeE-E
Confidence            765 554   378889999999998877431   2221  122357888863 5332332   12233       333 4


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .+..+  .++.+.++.+++.+|.+
T Consensus       136 ~~gG~--~~~~~~~~~il~~~~~~  157 (162)
T d3cuma2         136 MVGGD--AEALEKARPLFEAMGRN  157 (162)
T ss_dssp             EEESC--HHHHHHHHHHHHHHEEE
T ss_pred             EecCC--HHHHHHHHHHHHHHcCc
Confidence            44443  68899999999999854

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.50  E-value=1.9e-14  Score=125.72  Aligned_cols=156  Identities=18%  Similarity=0.177  Sum_probs=108.5

Q ss_pred             cccchhhhhhcCCCcc----cccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021356           86 LANRDEFIVRGGRDLF----KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG  161 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f----~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G  161 (313)
                      +..+++. +|+|+|..    .+...++.| +++||||+|.+|+.+|+.++.+      |+++++.++......... ..+
T Consensus        20 i~~~~~~-~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~   90 (191)
T d1gdha1          20 AGEGEKM-IRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQ   90 (191)
T ss_dssp             HHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHT
T ss_pred             HHHHHHH-HHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-ccc
Confidence            5556767 99999953    234579999 9999999999999999999999      999876655433322222 333


Q ss_pred             ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021356          162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV  232 (313)
Q Consensus       162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~v  232 (313)
                      ...    ..++++++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-.+      ..+++ +.......||
T Consensus        91 ~~~----~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-g~i~~a~lDV  165 (191)
T d1gdha1          91 ATF----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGFDV  165 (191)
T ss_dssp             CEE----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESC
T ss_pred             ccc----cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHc-CCceEEEEEC
Confidence            332    4589999999999999999998775 776 8999999999999654 5322      22332 2222234566


Q ss_pred             EEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +..+|. +..   .++.        --|+++|||-
T Consensus       166 ~~~EP~-~~~---~l~~--------~~nvi~TPHi  188 (191)
T d1gdha1         166 FAGEPN-INE---GYYD--------LPNTFLFPHI  188 (191)
T ss_dssp             CTTTTS-CCT---TGGG--------CTTEEECSSC
T ss_pred             CCCCCC-CCc---hHHc--------CCCEEECCcc
Confidence            667772 222   1332        1478899984

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=1.9e-14  Score=124.74  Aligned_cols=153  Identities=18%  Similarity=0.185  Sum_probs=108.8

Q ss_pred             cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +..+++. +++|.|... +...++.| +++||||+|.+|+.+|+.++.+      |++|++..+...  .......++. 
T Consensus        20 i~~~~~~-~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~-   88 (184)
T d1ygya1          20 IPAADAS-LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE-   88 (184)
T ss_dssp             HHHHHHH-HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-
T ss_pred             HHHHHHH-HHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-
Confidence            4445666 899999653 34578999 9999999999999999999999      999765554322  2333444554 


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+.++ |-.      +..+++ +......++|...
T Consensus        89 ----~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~-~~i~~a~lDV~~~  163 (184)
T d1ygya1          89 ----LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG-GHVRAAGLDVFAT  163 (184)
T ss_dssp             ----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT-SSEEEEEESSCSS
T ss_pred             ----eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhc-CcEeEEEEeCCCC
Confidence                4589999999999999999999876 776 8999999999999664 532      222332 2222234566667


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVH  266 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~  266 (313)
                      +|. +...   ++.        =.|.++|||
T Consensus       164 EP~-~~~~---l~~--------~~nviiTPH  182 (184)
T d1ygya1         164 EPC-TDSP---LFE--------LAQVVVTPH  182 (184)
T ss_dssp             SSC-SCCG---GGG--------CTTEEECSS
T ss_pred             CCC-CCch---Hhc--------CCCEEECCC
Confidence            774 2222   333        147888987

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.44  E-value=7.7e-14  Score=120.90  Aligned_cols=116  Identities=14%  Similarity=0.089  Sum_probs=91.6

Q ss_pred             cccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356           86 LANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +..+++. +++|+|...   ....+|.| ++|||||+|.+|..+|+.++.+      |++|++.++.. .........++
T Consensus        18 ~~~~~~~-~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~-~~~~~~~~~~~   88 (188)
T d2naca1          18 YLPSHEW-ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNL   88 (188)
T ss_dssp             HHHHHHH-HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTC
T ss_pred             HHHHHHH-HHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeecc-ccccccccccc
Confidence            4456666 899999542   13578999 9999999999999999999999      99976665543 33334444555


Q ss_pred             eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cc
Q 021356          163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GF  214 (313)
Q Consensus       163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv  214 (313)
                      ..    ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-
T Consensus        89 ~~----~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  139 (188)
T d2naca1          89 TW----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK  139 (188)
T ss_dssp             EE----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred             cc----cCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchh
Confidence            53    5689999999999999999998876 776 8999999999999654 53

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=4.2e-14  Score=122.63  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021356           86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE  164 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~  164 (313)
                      +..+++. +++|.|... ....+|.| ++|||||+|.+|..+|+.++.+      |++|+++++......     .....
T Consensus        20 ~~~~~~~-~~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~   86 (188)
T d1sc6a1          20 VPEANAK-AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ   86 (188)
T ss_dssp             HHHHHHH-HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE
T ss_pred             hHHHHHH-HHhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh
Confidence            3445666 789999653 23568999 9999999999999999999999      999877765432211     12221


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEe
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAV  235 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~v  235 (313)
                          ..+++|++++||+|++|+|.+..+. +++ +.++.||+|++|+.++ |-.+      ..+++ +......+||...
T Consensus        87 ----~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~-~~~~~a~lDV~~~  161 (188)
T d1sc6a1          87 ----VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVFPT  161 (188)
T ss_dssp             ----CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC---
T ss_pred             ----hhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHc-CCceEEEEecCCC
Confidence                4589999999999999999998875 776 8999999999999654 5321      22322 1122224566667


Q ss_pred             ccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021356          236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ  267 (313)
Q Consensus       236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~  267 (313)
                      +|.........-+.      .. -|.++|||-
T Consensus       162 EP~~~~~~~~~~l~------~~-~nv~~TPHi  186 (188)
T d1sc6a1         162 EPATNSDPFTSPLA------EF-DNVLLTPHI  186 (188)
T ss_dssp             ------CTTTGGGT------TC-TTEEEECCC
T ss_pred             CCCCcCCccchhHh------cC-CCEEEcCCc
Confidence            77432211111111      12 478899983

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.41  E-value=6e-14  Score=123.02  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=87.1

Q ss_pred             cccchhhhhhcCCCccc--ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356           86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus        86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      +..+++. +++|.|...  +...+|.| ++|||||+|.||+.+|+.++.+      |++|++.++.....    ....+.
T Consensus        20 ~~~~~~~-~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~   87 (199)
T d1dxya1          20 MGKVQAQ-LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD   87 (199)
T ss_dssp             HHHHHHH-HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE
T ss_pred             HHHHHHH-HHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh
Confidence            4445666 889999542  23479999 9999999999999999999999      99987665543221    111222


Q ss_pred             ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cc
Q 021356          164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GF  214 (313)
Q Consensus       164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv  214 (313)
                           ..++++++++||+|++++|.+..++ +++ +.++.||+|++|+.++ |-
T Consensus        88 -----~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~  136 (199)
T d1dxya1          88 -----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPN  136 (199)
T ss_dssp             -----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTT
T ss_pred             -----HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHh
Confidence                 4589999999999999999998876 776 8899999999999654 53

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=1e-12  Score=109.06  Aligned_cols=111  Identities=20%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |||||||+|+||.++|++|++.      |++++++++..++. ...+...++..      +..|++++||+|++++|++.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~------~~~e~~~~~diIi~~v~~~~   68 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVTE------TSEEDVYSCPVVISAVTPGV   68 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCEE------CCHHHHHTSSEEEECSCGGG
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhcccccc------cHHHHHhhcCeEEEEecCch
Confidence            6899999999999999999999      99987776654433 23344445543      77899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCC
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGM  240 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~p  240 (313)
                      ..+++.++.+.+  +++++|++...   ...+.+   .++ +..|+.....++
T Consensus        69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~  115 (152)
T d1i36a2          69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGS  115 (152)
T ss_dssp             HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSC
T ss_pred             HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCC
Confidence            988888887766  56888887663   233333   333 346776555443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.31  E-value=2.4e-12  Score=109.39  Aligned_cols=152  Identities=15%  Similarity=0.069  Sum_probs=101.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec----CCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      .+|||||+|+||.+||++|.+.      |++|++++|..+ ..+...+.+....    .....++.+++..+|+|++++|
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~   75 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVS-KVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK   75 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTH-HHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence            5799999999999999999999      999876666543 3444444433210    0112355678889999999999


Q ss_pred             chhHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021356          188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF  263 (313)
Q Consensus       188 ~~a~~-~vi~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii  263 (313)
                      +.... ++++.+.+.+++|++++|++.....   .+..  .....++.|+.. |-.-++.  .. +.       |. . +
T Consensus        76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~lda-pvsGg~~--~A-~~-------G~-~-~  140 (176)
T d2pgda2          76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVGS-GVSGGED--GA-RY-------GP-S-L  140 (176)
T ss_dssp             TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EEESHHH--HH-HH-------CC-E-E
T ss_pred             chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceecc-ccccCcc--cc-cC-------Cc-E-E
Confidence            87765 5888999999999999998876431   2211  122346778753 4222222  11 22       34 4 3


Q ss_pred             EeccCCCHHHHHHHHHHHHHcCCC
Q 021356          264 AVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       264 tp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      .+..+  .++.+.++.+++.+|.+
T Consensus       141 ~~gG~--~~~~~~~~~il~~~~~k  162 (176)
T d2pgda2         141 MPGGN--KEAWPHIKAIFQGIAAK  162 (176)
T ss_dssp             EEEEC--TTTHHHHHHHHHHHSCB
T ss_pred             EcCCC--HHHHHHHHHHHHHHhcc
Confidence            34444  46889999999999964

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.1e-11  Score=103.21  Aligned_cols=155  Identities=15%  Similarity=0.152  Sum_probs=115.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceec--------------
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE--------------  165 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~--------------  165 (313)
                      |++|+|||.|.||.++|..+...      |++|++.++. ++..+.+           .+.+....              
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~   76 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQT-EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST   76 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred             eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECC-hHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence            58999999999999999999999      9998766554 3322222           12222100              


Q ss_pred             CCCcCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 021356          166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP  242 (313)
Q Consensus       166 ~~~~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~  242 (313)
                      -....+..+++++||+|+=++|.+...  +++.++.+.+++++++. .+++..+..+..   .....-+|++.|+--|.+
T Consensus        77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~  153 (192)
T d1f0ya2          77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP  153 (192)
T ss_dssp             EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred             ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence            012457788999999999999987664  39999999999999986 677777767665   334446899999977776


Q ss_pred             hHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                      .+              .-.=++++..++++.++.+.++++.+|..-+
T Consensus       154 ~~--------------~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV  186 (192)
T d1f0ya2         154 VM--------------KLVEVIKTPMTSQKTFESLVDFSKALGKHPV  186 (192)
T ss_dssp             TC--------------CEEEEECCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cc--------------cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            52              1222788999999999999999999995443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.26  E-value=1.4e-11  Score=102.93  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-----------CCCcCCHHhhhccCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------~~~~~~~~e~i~~AD  180 (313)
                      |||+|||.|+||.++|..|.+.      |++|.++.+. ++..+...+.|....           .....++.|+++++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence            7999999999999999999999      9998777664 444445444442110           001357889999999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|++++|...+.++++++.++++++++|+.+.|.
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence            9999999999999999999999999998887765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.23  E-value=4.4e-11  Score=102.93  Aligned_cols=154  Identities=11%  Similarity=0.094  Sum_probs=112.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC--------CCcCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTLGD  171 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~--------~~~~~  171 (313)
                      |++|+|||.|.||.++|..+...      |++|++.++. ++..+.+.+           .+.....        -...+
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~   76 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL   76 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccc
Confidence            68999999999999999999998      9998766554 333332211           1111000        00112


Q ss_pred             HHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021356          172 IYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY  248 (313)
Q Consensus       172 ~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf  248 (313)
                      ..+.+.+||+|+-++|-+-..+  ++.++-+.++++++|. .+++..+..+..   .+...-+|++.|+-.|.+.+    
T Consensus        77 ~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~~----  149 (186)
T d1wdka3          77 SYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHMM----  149 (186)
T ss_dssp             SSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTTC----
T ss_pred             ccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCcccC----
Confidence            2345789999999999876643  8999999999999986 777887777765   33444689999997777652    


Q ss_pred             HhcccccCCCceEE-EEeccCCCHHHHHHHHHHHHHcCCCce
Q 021356          249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFT  289 (313)
Q Consensus       249 ~~G~e~~g~G~~~i-itp~~d~~~ea~e~a~~L~~alG~~~~  289 (313)
                                 +.+ ++++..++++.++.+.++++.+|..-+
T Consensus       150 -----------~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv  180 (186)
T d1wdka3         150 -----------PLVEVIRGEKSSDLAVATTVAYAKKMGKNPI  180 (186)
T ss_dssp             -----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -----------CeEEECCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence                       232 688999999999999999999995443

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=7.5e-11  Score=98.06  Aligned_cols=143  Identities=12%  Similarity=0.084  Sum_probs=95.3

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA  192 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~  192 (313)
                      ||||||+|+||.++|++|.+.      |+. ++++|..++..+...+.+...      +..+.+.++|++++++|.....
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~v   68 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTREV   68 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhhh
Confidence            799999999999999999988      875 578887766665555555542      3456777899999999988776


Q ss_pred             H-HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021356          193 D-NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD  268 (313)
Q Consensus       193 ~-vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d  268 (313)
                      . ..+.+.+.++++.+++|++-...   ..+.+  ..-..+++|+.. |-. +.. . .=++|       .-. +-+..+
T Consensus        69 ~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~--~~~~~gi~~lda-pVs-Gg~-~-~A~~G-------~L~-~~vgG~  134 (156)
T d2cvza2          69 YEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLDA-PVS-GGT-S-GAEAG-------TLT-VMLGGP  134 (156)
T ss_dssp             HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEEC-CEE-SHH-H-HHHHT-------CEE-EEEESC
T ss_pred             hhhhccccccccccccccccccCCHHHHHHHHH--HHHHcCCeEEec-ccc-Cch-h-hhccC-------CEE-EEEeCC
Confidence            5 55689999999999998876532   22222  111346777743 522 111 1 11223       223 444544


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 021356          269 VDGRATNVALGWSVALG  285 (313)
Q Consensus       269 ~~~ea~e~a~~L~~alG  285 (313)
                        .+..+.++-++. ++
T Consensus       135 --~~~~~~~~p~L~-~~  148 (156)
T d2cvza2         135 --EEAVERVRPFLA-YA  148 (156)
T ss_dssp             --HHHHHHHGGGCT-TE
T ss_pred             --HHHHHHHHHHHH-hc
Confidence              578888877663 54

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.10  E-value=3.2e-10  Score=95.51  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=98.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-------CCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------NGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-------~~~~~~~~e~i~~ADvIiL  184 (313)
                      |||||||+|+||.++|++|.+.      |++|.+++|. ++..+...+.+....       .....++-..+..++.+++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRT-YSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEE
Confidence            7899999999999999999999      9998766554 333333433333210       0001122345568889999


Q ss_pred             cccchhHH-HHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021356          185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN  260 (313)
Q Consensus       185 avP~~a~~-~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~  260 (313)
                      .+++.... .+++.+...++++++++|++-...   ..+.+  .....++.|+...-.+  ..  ...+.       |. 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~--~l~~~~~~~ldapv~g--~~--~~a~~-------g~-  140 (178)
T d1pgja2          75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ--QLEAAGLRFLGMGISG--GE--EGARK-------GP-  140 (178)
T ss_dssp             CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH--HHHTTTCEEEEEEEES--HH--HHHHH-------CC-
T ss_pred             eecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH--HHhhcceeEecccccC--Cc--chhcC-------Cc-
Confidence            98887765 488899999999999998876532   12222  1124567887642222  11  12233       33 


Q ss_pred             EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          261 SSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       261 ~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                      . +.+..+  ++..+.++.+++.+|.+
T Consensus       141 ~-~mvgG~--~~~~~~v~pil~~~~~~  164 (178)
T d1pgja2         141 A-FFPGGT--LSVWEEIRPIVEAAAAK  164 (178)
T ss_dssp             E-EEEEEC--HHHHHHHHHHHHHHSCB
T ss_pred             E-EEeeCC--HHHHHHHHHHHHHHhcc
Confidence            3 344443  68999999999999954

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.04  E-value=3.7e-10  Score=96.20  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=72.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCceec---------CCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEE---------NGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~---------~~~~~~~~e~i~~ADv  181 (313)
                      |+|+|||.|.+|.++|..|.+.      |++|.++.|. +++..+.-.+......         -....+++++++++|+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~   74 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV   74 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence            7999999999999999999999      9998877664 2222222111111000         0013477889999999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |++++|.+...++++++.++++++.+|+.+.|.
T Consensus        75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~  107 (180)
T d1txga2          75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL  107 (180)
T ss_dssp             EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             hhcccchhhhHHHHHhhccccccceecccccCc
Confidence            999999999999999999999998888777765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.2e-10  Score=93.76  Aligned_cols=94  Identities=19%  Similarity=0.179  Sum_probs=78.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      ..|.| |+++|||+|.+|+.+|+.++.+      |++|++.+.. +...-+|...|+.     ..+++++++.+|+|+.+
T Consensus        20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~d-p~~al~A~~dG~~-----v~~~~~a~~~adivvta   86 (163)
T d1li4a1          20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEID-PINALQAAMEGYE-----VTTMDEACQEGNIFVTT   86 (163)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred             ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecc-cchhHHhhcCceE-----eeehhhhhhhccEEEec
Confidence            46899 9999999999999999999999      9998766654 4444567778998     45899999999999999


Q ss_pred             ccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~  215 (313)
                      +....   ++. +.++.||+|++|..++.+.
T Consensus        87 TGn~~---vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          87 TGCID---IILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             SSCSC---SBCHHHHTTCCTTEEEEECSSST
T ss_pred             CCCcc---chhHHHHHhccCCeEEEEecccc
Confidence            88543   454 8889999999999998873

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.82  E-value=4.5e-09  Score=89.39  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=79.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      -|.| |++.|+|+|..|+.+|+.+|..      |.+|++.... +-..-+|.-.||.     +.+++|+++.+|+|+.+|
T Consensus        20 ~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~D-Pi~alqA~mdGf~-----v~~~~~a~~~aDi~vTaT   86 (163)
T d1v8ba1          20 LISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDKGDFFITCT   86 (163)
T ss_dssp             CCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTTCSEEEECC
T ss_pred             eecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecC-chhhHHHHhcCCc-----cCchhHccccCcEEEEcC
Confidence            4789 9999999999999999999999      9998777654 4444567778998     569999999999999999


Q ss_pred             cchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv~  215 (313)
                      ....   ++. +.+..||+|+||..++.|.
T Consensus        87 Gn~~---vI~~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          87 GNVD---VIKLEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             SSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred             CCCc---cccHHHHHHhhCCeEEEeccccc
Confidence            8755   454 7889999999999999885

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.78  E-value=9.6e-09  Score=88.42  Aligned_cols=97  Identities=19%  Similarity=0.170  Sum_probs=67.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--------CceecC--CCcCCHHhhhccCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD  180 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~~~~~~~e~i~~AD  180 (313)
                      |+||+|||.|.+|.++|..|.+.      |++|.++.|. ++..+.-.+.        ++....  ....+++++++++|
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~-~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad   79 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMN-EEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAE   79 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSC-HHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCS
T ss_pred             eceEEEECCCHHHHHHHHHHHHc------CCeEEEEEec-HHHHHHHhhcccccccccccccccccccchhhhhccCCCC
Confidence            47899999999999999999998      9888777654 3222211111        111000  01357899999999


Q ss_pred             EEEEcccchhHHHHHHHHHhc-----CCCCcEEE-EecCc
Q 021356          181 LVLLLISDAAQADNYEKIFSC-----MKPNSILG-LSHGF  214 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~-----mk~gaiLi-d~~Gv  214 (313)
                      +|++++|.+...++++++.++     ++++..|+ .+-|+
T Consensus        80 ~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi  119 (189)
T d1n1ea2          80 IILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI  119 (189)
T ss_dssp             CEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred             EEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence            999999999999998877653     34555554 55676

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=5.5e-09  Score=85.40  Aligned_cols=97  Identities=16%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhhccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      |||+|||.|.||..+|..|.+.      |++|.+..|........ ...+.   ........+..+.+..+|+|++++|.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka   73 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDPDFLATSDLLLVTLKA   73 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhhh-ccccCCccccccccccchhhhhcccceEEEeecc
Confidence            7999999999999999999999      99988777654321100 00010   00000022445778899999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEE-EecCch
Q 021356          189 AAQADNYEKIFSCMKPNSILG-LSHGFL  215 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLi-d~~Gv~  215 (313)
                      ....+.++.+.++++++++|+ ..-|+.
T Consensus        74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          74 WQVSDAVKSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             cchHHHHHhhccccCcccEEeeccCccc
Confidence            999999999999999888766 556774

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.69  E-value=2.8e-08  Score=89.23  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=77.4

Q ss_pred             cCCHHhhhccCCEEEEcccchhH-HHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhH
Q 021356          169 LGDIYETISGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSV  244 (313)
Q Consensus       169 ~~~~~e~i~~ADvIiLavP~~a~-~~vi~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~  244 (313)
                      +.++.|++++||+||+++|...+ .++++++.+++++|++|+|++.++..   .+.+  ..-+++++|++.||..+ +..
T Consensus       132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a~-pe~  208 (242)
T d2b0ja2         132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGCV-PEM  208 (242)
T ss_dssp             ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSSC-TTT
T ss_pred             ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccCc-Ccc
Confidence            46889999999999999997665 56999999999999999999987532   2222  12346899999999442 221


Q ss_pred             HHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021356          245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP  287 (313)
Q Consensus       245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~  287 (313)
                                  .|...  +.....+++.++.++.+++.+|..
T Consensus       209 ------------~g~~l--i~~~~aseE~iekv~elles~Gk~  237 (242)
T d2b0ja2         209 ------------KGQVY--IAEGYASEEAVNKLYEIGKIARGK  237 (242)
T ss_dssp             ------------CCCEE--EEESSSCHHHHHHHHHHHHHHHSC
T ss_pred             ------------ccceE--EecCCCCHHHHHHHHHHHHHHCCC
Confidence                        13444  334467899999999999999953

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.66  E-value=1.3e-07  Score=81.25  Aligned_cols=158  Identities=12%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-------------------HHCCceecCCCcCCH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------------------RAAGFTEENGTLGDI  172 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-------------------~~~G~~~~~~~~~~~  172 (313)
                      |+|+|||+|-+|.++|..|.+.      |++| +++|.+++..+.-                   ...+...   ...+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~------g~~V-~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~   70 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR------GHEV-IGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF   70 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT------TCEE-EEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhC------CCcE-EEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence            7899999999999999999999      9987 5777655433221                   1222111   14578


Q ss_pred             HhhhccCCEEEEcccch----------hHHHHHH---HHHhcCCCCcEEEEecCc----hh---hh-hhh-cccCCCCCc
Q 021356          173 YETISGSDLVLLLISDA----------AQADNYE---KIFSCMKPNSILGLSHGF----LL---GH-LQS-IGLDFPKNI  230 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~----------a~~~vi~---ei~~~mk~gaiLid~~Gv----~l---~~-~~~-~~~~l~~~i  230 (313)
                      .+++++||+|++|+|..          ....+++   ++....+++++|+.-+-+    .-   .. ++. .+.....++
T Consensus        71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~  150 (202)
T d1mv8a2          71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF  150 (202)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred             HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence            89999999999999842          1223444   445566788888765543    21   11 111 111112222


Q ss_pred             cEEEecc--CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeec
Q 021356          231 GVIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT  292 (313)
Q Consensus       231 ~vV~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~t  292 (313)
                       .+..+|  -.+|..++++...         +.++.-.  .+++..+.++++++.+..+ ++.+
T Consensus       151 -~~~~~PE~~~~G~a~~d~~~~---------~~iViG~--~~~~~~~~~~~ly~~i~~~-ii~~  201 (202)
T d1mv8a2         151 -GVGTNPEFLRESTAIKDYDFP---------PMTVIGE--LDKQTGDLLEEIYRELDAP-IIRK  201 (202)
T ss_dssp             -EEEECCCCCCTTSHHHHHHSC---------SCEEEEE--SSHHHHHHHHHHHTTSSSC-EEEE
T ss_pred             -cchhhhhhhcccchhhhhcCC---------CeEEEEe--CCHHHHHHHHHHHHhcCCC-eEec
Confidence             366777  3556666555542         2322222  2368899999999998743 4444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.37  E-value=5.5e-07  Score=75.21  Aligned_cols=98  Identities=18%  Similarity=0.225  Sum_probs=72.4

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|++ ++|.|||.|.||..++++|...      |. ++.+..|..++..+.+.+.|...  ..+.++.+.+.++|+||.
T Consensus        20 ~~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~   90 (159)
T d1gpja2          20 GSLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVS   90 (159)
T ss_dssp             SCCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEE
T ss_pred             CCccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEE
Confidence            46788 9999999999999999999998      87 57788887666667777777542  235577888999999999


Q ss_pred             cccchh--H-HHHHHHHHhcCC--CCcEEEEec
Q 021356          185 LISDAA--Q-ADNYEKIFSCMK--PNSILGLSH  212 (313)
Q Consensus       185 avP~~a--~-~~vi~ei~~~mk--~gaiLid~~  212 (313)
                      +++-..  + .+.++.....=+  +..+++|.+
T Consensus        91 atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          91 ATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            997442  2 456665443222  234677874

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=9.3e-06  Score=66.65  Aligned_cols=81  Identities=16%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|||||+|.+|.- ....++..     .+++++...+++++ ..+.+.+.++..    ..+.++++++.|+|++++|+.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~   72 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA   72 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence            58999999999986 56666654     15666545555443 344555666542    458889999999999999999


Q ss_pred             hHHHHHHHHHhc
Q 021356          190 AQADNYEKIFSC  201 (313)
Q Consensus       190 a~~~vi~ei~~~  201 (313)
                      .+.+++...+..
T Consensus        73 ~h~~~~~~al~~   84 (164)
T d1tlta1          73 SHFDVVSTLLNA   84 (164)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hccccccccccc
Confidence            998888766554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.09  E-value=1.6e-05  Score=63.12  Aligned_cols=92  Identities=14%  Similarity=0.071  Sum_probs=59.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCHH---hh-hccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIY---ET-ISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~---e~-i~~ADvIiLav  186 (313)
                      |+|.|+|+|.+|..+++.|.+.      |++|++.+ ++++..+.+. +.|...-.+...+.+   ++ ++++|.++.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid-~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLID-IDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCCcceec-CChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence            7899999999999999999999      99876554 4444444443 345321111222332   22 68999999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEE
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                      ++....-++..+...+.+..++.-
T Consensus        74 ~~d~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCceEEEE
Confidence            987654444455555555555543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=9.5e-06  Score=64.07  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--cCCCcC-CHHhh-hccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLG-DIYET-ISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~-~~~e~-i~~ADvIiLavP  187 (313)
                      |++.|||+|.+|..+|+.|.+.      |++|++. +.+++..+.+.+.|...  .+.+.. .++++ +++||.|+++++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvi-d~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAV-DINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCCCEEE-ESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC------CCeEEEe-cCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence            6789999999999999999999      9987554 45556666666666421  111111 22333 789999999999


Q ss_pred             chhHHHHHH-HHHhcCCCCcEEE
Q 021356          188 DAAQADNYE-KIFSCMKPNSILG  209 (313)
Q Consensus       188 ~~a~~~vi~-ei~~~mk~gaiLi  209 (313)
                      +.....++- .+........++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          74 ANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             chHHhHHHHHHHHHHcCCCcEEe
Confidence            877665443 4444443333333

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.93  E-value=1.3e-05  Score=65.88  Aligned_cols=89  Identities=17%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiLavP~~  189 (313)
                      ++|||||+|.+|.. ....++..     .+.++++.++......+.+.+.+...   ...+.+++++ +.|+|++++|+.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~   73 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD   73 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence            68999999999976 56666654     14565544333334445566666542   2457777775 679999999999


Q ss_pred             hHHHHHHHHHhcCCCCcEEEE
Q 021356          190 AQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid  210 (313)
                      .+.+++.+.++.=++  +++.
T Consensus        74 ~H~~~~~~al~~gk~--V~~E   92 (167)
T d1xeaa1          74 VHSTLAAFFLHLGIP--TFVD   92 (167)
T ss_dssp             GHHHHHHHHHHTTCC--EEEE
T ss_pred             ccccccccccccccc--cccC
Confidence            999988776654222  5554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=1.9e-05  Score=65.78  Aligned_cols=84  Identities=13%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhh--ccCCEEEEcccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i--~~ADvIiLavP~  188 (313)
                      .+|||||+|.+|...++.++..     .+.+++...+.+.+ ..+.+.+.++........+.++++  .+.|+|++++|+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~   76 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT   76 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence            4899999999999999998765     14566544455443 334556666532111246888887  467999999999


Q ss_pred             hhHHHHHHHHHh
Q 021356          189 AAQADNYEKIFS  200 (313)
Q Consensus       189 ~a~~~vi~ei~~  200 (313)
                      ..+.+++.+.++
T Consensus        77 ~~h~~~~~~~l~   88 (184)
T d1ydwa1          77 SLHVEWAIKAAE   88 (184)
T ss_dssp             GGHHHHHHHHHT
T ss_pred             hhhcchhhhhhh
Confidence            999887776554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.82  E-value=2.1e-05  Score=63.36  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=64.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec--CC--CcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NG--TLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~--~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+|.|||+|.||..+|+.|.+.      |++|++.+|..++..+.+.+.+....  ..  .....++.+...|+++.++|
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~   76 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP   76 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence            8999999999999999999999      99998888875554444444432110  00  11234567889999999998


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .............   .+..++|..-.
T Consensus        77 ~~~~~~~~~~~~~---~~~~~~~~~~~  100 (182)
T d1e5qa1          77 YTFHATVIKSAIR---QKKHVVTTSYV  100 (182)
T ss_dssp             GGGHHHHHHHHHH---HTCEEECSSCC
T ss_pred             chhhhHHHHHHHh---hccceeecccC
Confidence            8766555543333   34556665543

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.77  E-value=0.00026  Score=59.21  Aligned_cols=145  Identities=12%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec---------------CCCcCCHHhhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---------------~~~~~~~~e~i  176 (313)
                      |+|+|||+|-+|..+|..+ +.      |++| +++|.+++..+.. ..|...-               -....+..+.+
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~------g~~V-~g~Din~~~v~~l-~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SL------QNEV-TIVDILPSKVDKI-NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY   71 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TT------TSEE-EEECSCHHHHHHH-HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             CEEEEECCChhHHHHHHHH-HC------CCcE-EEEECCHHHHHHH-hhcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence            7899999999999999766 56      8886 5777766543322 2222100               00123555667


Q ss_pred             ccCCEEEEcccchhH-------HHHHH---HHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEecc--CCCc
Q 021356          177 SGSDLVLLLISDAAQ-------ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCP--KGMG  241 (313)
Q Consensus       177 ~~ADvIiLavP~~a~-------~~vi~---ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhP--n~pg  241 (313)
                      .++|+|++++|....       ...++   +.....+++.+++..+-+.   ...+..   ...+ .. +...|  ..+|
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~---~~~~-~~-~~~~PE~i~~G  146 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ---KFQT-DR-IIFSPEFLRES  146 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHH---HTTC-SC-EEECCCCCCTT
T ss_pred             hccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeee---ccch-hh-hccchhhcchh
Confidence            899999999985421       11222   2222346677776554332   222222   2222 22 34455  4566


Q ss_pred             hhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHH
Q 021356          242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVAL  278 (313)
Q Consensus       242 ~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~  278 (313)
                      ....+.+..-        -.++..++....+..+..+
T Consensus       147 ~ai~d~~~p~--------riv~G~~~~~~~~~~~~~~  175 (196)
T d1dlja2         147 KALYDNLYPS--------RIIVSCEENDSPKVKADAE  175 (196)
T ss_dssp             STTHHHHSCS--------CEEEECCTTSCHHHHHHHH
T ss_pred             hhHhhccCCC--------EEEEeCCHhhHHHHHHHHH
Confidence            6666655421        2345555554444444443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.74  E-value=1.9e-05  Score=65.55  Aligned_cols=84  Identities=11%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      .+|||||+|.||...++.+++.     .+++++...+++.+.   ....++..    ..+.++...+.|+|++++|+..+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h   71 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD   71 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred             ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence            4789999999999999999875     256655444443322   12233332    34677788899999999999998


Q ss_pred             HHHHHHHHhcCCCCcEEEE
Q 021356          192 ADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid  210 (313)
                      .++....+   +.|.-+++
T Consensus        72 ~~~a~~aL---~aG~~vv~   87 (170)
T d1f06a1          72 IPEQAPKF---AQFACTVD   87 (170)
T ss_dssp             HHHHHHHH---TTTSEEEC
T ss_pred             HHHHHHHH---HCCCcEEE
Confidence            77766543   45665543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=2e-05  Score=59.37  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +|+| |+|.|||+|..|.|.|+.|.+.      |.+|++.+++.. +..+...+.+....   ....++.+.+.|+|++.
T Consensus         2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLPEAVERHT---GSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSSSCTTGGGSCTTSCEEE---SBCCHHHHHHCSEEEEC
T ss_pred             CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCcCchhHHHHhhccceee---cccchhhhccCCEEEEC
Confidence            6899 9999999999999999999999      999888876533 22222211111110   11224566788888884


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      -
T Consensus        72 P   72 (93)
T d2jfga1          72 P   72 (93)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=0.00013  Score=60.63  Aligned_cols=83  Identities=14%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP  187 (313)
                      .+|||||+|.+|.. .+..+++.    +...+++...+++.... ..+.+.+...   ...+.+|+++  +.|+|++++|
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp   76 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP   76 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeecccc
Confidence            47899999999987 57777764    00246554444444332 3344555432   2468899886  5799999999


Q ss_pred             chhHHHHHHHHHhc
Q 021356          188 DAAQADNYEKIFSC  201 (313)
Q Consensus       188 ~~a~~~vi~ei~~~  201 (313)
                      +..+.+++.+.+..
T Consensus        77 ~~~h~~~~~~al~~   90 (181)
T d1zh8a1          77 VELNLPFIEKALRK   90 (181)
T ss_dssp             GGGHHHHHHHHHHT
T ss_pred             cccccccccccccc
Confidence            99998888876654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.63  E-value=1.4e-05  Score=67.68  Aligned_cols=94  Identities=12%  Similarity=0.091  Sum_probs=66.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-C--ceecCCCcCCHHhhhccCCEEEEccc-
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-G--FTEENGTLGDIYETISGSDLVLLLIS-  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G--~~~~~~~~~~~~e~i~~ADvIiLavP-  187 (313)
                      -++.|||.|..|..-++.++..      |.+|.+.+.+ .+..++.... +  ..........+++.+++||+||-++- 
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~-~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali  105 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDIN-VERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV  105 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCc-HHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence            7999999999999999999998      9987766654 3333333222 1  11100111246788999999998764 


Q ss_pred             -chhHHHHHH-HHHhcCCCCcEEEEec
Q 021356          188 -DAAQADNYE-KIFSCMKPNSILGLSH  212 (313)
Q Consensus       188 -~~a~~~vi~-ei~~~mk~gaiLid~~  212 (313)
                       -.....++. +....||||++|+|++
T Consensus       106 pG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         106 PGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCcccCeeecHHHHhhcCCCcEEEEee
Confidence             444455775 8899999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.60  E-value=0.00018  Score=55.61  Aligned_cols=79  Identities=14%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      -+|+| ++|.|||.|.+|.+-++.|.++      |.+|++......+......+.+ +......  -.++-+.++|+|+.
T Consensus         8 l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~--~~~~dl~~~~lv~~   78 (113)
T d1pjqa1           8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP--FDETLLDSCWLAIA   78 (113)
T ss_dssp             ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS--CCGGGGTTCSEEEE
T ss_pred             EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeeccC--CCHHHhCCCcEEee
Confidence            58999 9999999999999999999999      9988776655443333322333 3221111  22345789999999


Q ss_pred             cccchhHHH
Q 021356          185 LISDAAQAD  193 (313)
Q Consensus       185 avP~~a~~~  193 (313)
                      ++.+....+
T Consensus        79 at~d~~~n~   87 (113)
T d1pjqa1          79 ATDDDTVNQ   87 (113)
T ss_dssp             CCSCHHHHH
T ss_pred             cCCCHHHHH
Confidence            999887654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.52  E-value=0.00013  Score=59.63  Aligned_cols=72  Identities=21%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC----CceecCC-CcCCHHhhhccCC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSD  180 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~-~~~~~~e~i~~AD  180 (313)
                      -.+ +||+|||.|.+|.++|..|...      ++  ++.+.+.........+.+.    -+...+. ......+.+++||
T Consensus         4 ~~~-~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daD   76 (148)
T d1ldna1           4 NGG-ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDAD   76 (148)
T ss_dssp             TTS-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCS
T ss_pred             CCC-CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccce
Confidence            346 8999999999999999999887      75  5554443322222222221    1110000 0123457789999


Q ss_pred             EEEEcc
Q 021356          181 LVLLLI  186 (313)
Q Consensus       181 vIiLav  186 (313)
                      +|+++.
T Consensus        77 vvvita   82 (148)
T d1ldna1          77 LVVICA   82 (148)
T ss_dssp             EEEECC
T ss_pred             eEEEec
Confidence            999965

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.50  E-value=0.00027  Score=58.42  Aligned_cols=93  Identities=20%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhh-----ccCCEEE
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI-----SGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i-----~~ADvIi  183 (313)
                      .+|||||.|.+|+. +.+.|+..     ...+++...++++  ...+.+.+.|+...   ....++++     .+.|+|+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~-----~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiVf   76 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNA-----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVF   76 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHC-----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhC-----CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEEE
Confidence            58999999999986 56777765     1335443333333  34467888887532   22334333     4689999


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++||...+.+.... ....+.|+.++|-++
T Consensus        77 ~ATpag~h~~~~~~-~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          77 DATSASAHVQNEAL-LRQAKPGIRLIDLTP  105 (157)
T ss_dssp             ECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred             EcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence            99998776542221 223478999998776

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3.9e-05  Score=63.58  Aligned_cols=96  Identities=19%  Similarity=0.007  Sum_probs=64.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHH-hhhccCCE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIY-ETISGSDL  181 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~-e~i~~ADv  181 (313)
                      .+++| ++|.|||.|-.+.|++..|.+.      |.++.+.+|..++..+.+....   ...    ..+.+ ....++|+
T Consensus        14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred             CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence            46789 9999999999999999999998      8888888877544444444322   111    11222 23467999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ||-++|.....+....-.+.++++.++.|+-
T Consensus        83 iIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~v  113 (170)
T d1nyta1          83 IINATSSGISGDIPAIPSSLIHPGIYCYDMF  113 (170)
T ss_dssp             EEECCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             eecccccCcccCCCCCcHHHhccCcEEEEee
Confidence            9999998765332111123467777777663

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.47  E-value=0.00015  Score=62.55  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEEE
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIiL  184 (313)
                      ..|+| ++|+|.|+|++|..+|+.|.+.      |.+|++ .+.+......+...|..     ..+.++++. +||+++.
T Consensus        23 ~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv-~d~d~~~~~~~~~~g~~-----~~~~~~~~~~~~DI~iP   89 (201)
T d1c1da1          23 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLV-ADTDTERVAHAVALGHT-----AVALEDVLSTPCDVFAP   89 (201)
T ss_dssp             CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEE-ECSCHHHHHHHHHTTCE-----ECCGGGGGGCCCSEEEE
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEE-ecchHHHHHHHHhhccc-----ccCccccccccceeeec
Confidence            57999 9999999999999999999999      998764 45555666777777776     346667665 8998887


Q ss_pred             cccchhH
Q 021356          185 LISDAAQ  191 (313)
Q Consensus       185 avP~~a~  191 (313)
                      |--...+
T Consensus        90 cA~~~~I   96 (201)
T d1c1da1          90 CAMGGVI   96 (201)
T ss_dssp             CSCSCCB
T ss_pred             ccccccc
Confidence            6554443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.43  E-value=0.00011  Score=62.78  Aligned_cols=94  Identities=13%  Similarity=0.137  Sum_probs=65.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc--eecC-CCc-------------------
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEEN-GTL-------------------  169 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~--~~~~-~~~-------------------  169 (313)
                      -++.|||.|..|..-++.++..      |.+|.+.+. +....++.+..+-  +.-. ...                   
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~-~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~  102 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDV-RAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  102 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CSTTHHHHHHTTCEECCC-----------------------C
T ss_pred             cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEec-cHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence            5899999999999999999988      988765554 4455566666542  2100 000                   


Q ss_pred             ---CCHHhhhccCCEEEEcc--cchhHHHHHH-HHHhcCCCCcEEEEec
Q 021356          170 ---GDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH  212 (313)
Q Consensus       170 ---~~~~e~i~~ADvIiLav--P~~a~~~vi~-ei~~~mk~gaiLid~~  212 (313)
                         ..+.+.+++||+||-++  |-...+.++. +..+.||||++|+|++
T Consensus       103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence               01234588999999755  4444455665 8889999999999986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.37  E-value=0.00023  Score=58.13  Aligned_cols=66  Identities=17%  Similarity=0.181  Sum_probs=41.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      +||+|||.|.+|.++|..|...      |.  ++++.+.........+.+       .+...  ....+. +.+++||+|
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv   76 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV   76 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence            8999999999999999999887      64  554444332222222221       11110  012344 457899999


Q ss_pred             EEcc
Q 021356          183 LLLI  186 (313)
Q Consensus       183 iLav  186 (313)
                      +++.
T Consensus        77 vita   80 (146)
T d1ez4a1          77 VITA   80 (146)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9975

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.35  E-value=0.00052  Score=56.31  Aligned_cols=69  Identities=13%  Similarity=0.043  Sum_probs=43.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      +||+|||.|.+|.++|..|...      ++ ++++.+.........+..       .+.........+.++.+++||+|+
T Consensus         8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv   81 (154)
T d1pzga1           8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI   81 (154)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence            8999999999999999988877      76 554443332222222222       111100001235678899999999


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      ++.
T Consensus        82 ita   84 (154)
T d1pzga1          82 VTA   84 (154)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            977

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.32  E-value=0.00045  Score=55.62  Aligned_cols=69  Identities=20%  Similarity=0.179  Sum_probs=42.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH--CC--ceecCC--CcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~~--~~~~~~e~i~~ADvIi  183 (313)
                      |||+|||.|.+|.++|..|...      +.  ++.+.+.........+..  .-  +...+.  ...+..+.+++||+|+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv   74 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI   74 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence            6899999999999999999887      64  555444333322222221  10  000000  0124457789999999


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      ++.
T Consensus        75 ita   77 (142)
T d1guza1          75 ITA   77 (142)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            985

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.28  E-value=2.5e-05  Score=65.30  Aligned_cols=98  Identities=12%  Similarity=-0.054  Sum_probs=58.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .+++| ++|.|+|.|-.+.+++..|.+.      +.++.+.+|..++..+.+...+...........+..+.++|+||-+
T Consensus        14 ~~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~   86 (171)
T d1p77a1          14 WLRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINA   86 (171)
T ss_dssp             CCCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEEC
T ss_pred             CCCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeec
Confidence            36788 9999999999999999999876      7788888887555444444432110000011222346789999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEE
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                      +|.....+........++++.+++|
T Consensus        87 tp~g~~~~~~~~~~~~~~~~~~~~D  111 (171)
T d1p77a1          87 TSAGLSGGTASVDAEILKLGSAFYD  111 (171)
T ss_dssp             CCC-------CCCHHHHHHCSCEEE
T ss_pred             ccccccccccchhhhhhcccceeee
Confidence            9987543322111122344555554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.27  E-value=0.00032  Score=57.25  Aligned_cols=69  Identities=20%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcc-cHHHHHHC----CceecCC-CcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR-SFAEARAA----GFTEENG-TLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~-s~~~A~~~----G~~~~~~-~~~~~~e~i~~ADvIi  183 (313)
                      |||+|||.|.+|.++|..|...      |+  ++++ .+.++. ....+.+.    .+...+. ......+.+++||+|+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL-~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVV   74 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVF-IDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVI   74 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEE-ECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhc------CCCceEEE-EecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEE
Confidence            7999999999999999998877      64  5544 444432 22222211    0110000 0112345689999999


Q ss_pred             Eccc
Q 021356          184 LLIS  187 (313)
Q Consensus       184 LavP  187 (313)
                      ++..
T Consensus        75 itaG   78 (146)
T d1hyha1          75 STLG   78 (146)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            9754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.24  E-value=0.00067  Score=54.95  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=41.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH--CCceecC--CCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEEN--GTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~~--~~~~~~~e~i~~ADvIiLa  185 (313)
                      +||+|||.|.+|.++|..|...      +.  ++.+.+.........+.+  +......  .......+.+++||+|+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit   75 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT   75 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence            6899999999999999999887      65  565555443333333333  1111000  0012234678999999997


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      .
T Consensus        76 a   76 (142)
T d1y6ja1          76 A   76 (142)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.22  E-value=0.00014  Score=58.00  Aligned_cols=78  Identities=19%  Similarity=0.152  Sum_probs=52.4

Q ss_pred             CEEEEE-cccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgII-G~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |||+|| |.|.||.++|+.|.+.      |++|+++.|+.++..+.+.+.+   ... .....+........+......+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   73 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence            789999 8999999999999999      9999988876443222222211   100 0012245566677888888888


Q ss_pred             chhHHHHHH
Q 021356          188 DAAQADNYE  196 (313)
Q Consensus       188 ~~a~~~vi~  196 (313)
                      .....+.+.
T Consensus        74 ~~~~~~~~~   82 (212)
T d1jaya_          74 WEHAIDTAR   82 (212)
T ss_dssp             HHHHHHHHH
T ss_pred             eeccchHHH
Confidence            777766443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0015  Score=53.06  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh--------ccC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SGS  179 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i--------~~A  179 (313)
                      +| .+|.|+|.|.+|...++.++..      |...++..+.+++.++.|++.|...- +....+..+..        ...
T Consensus        26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CC-CEEEEECCCccHHHHHHHHHHc------CCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence            57 8999999999999999999999      98434555666677888999886321 11112333332        258


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      |+||-++....   .++...+.++++-.++..+
T Consensus        99 Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          99 EVTIECTGAEA---SIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             SEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred             eEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence            99999998643   4666667788887766554

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.17  E-value=0.00058  Score=58.71  Aligned_cols=84  Identities=10%  Similarity=0.116  Sum_probs=56.7

Q ss_pred             CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecC-CCcCCHHhhhc--cCCEEEEcc
Q 021356          112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~-~~~~~~~e~i~--~ADvIiLav  186 (313)
                      -+|||||+|.+|.. +...++..     .+++++...+++++. .+.+++.|+.... ....+.+|+++  +.|+|++++
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t  108 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL  108 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence            58999999999975 45555543     156766555555443 4455666653210 01457888885  579999999


Q ss_pred             cchhHHHHHHHHHh
Q 021356          187 SDAAQADNYEKIFS  200 (313)
Q Consensus       187 P~~a~~~vi~ei~~  200 (313)
                      |+..+.+++.+.+.
T Consensus       109 p~~~H~~~~~~al~  122 (221)
T d1h6da1         109 PNSLHAEFAIRAFK  122 (221)
T ss_dssp             CGGGHHHHHHHHHH
T ss_pred             chhhhhhHHHHhhh
Confidence            99999887776554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.0011  Score=53.87  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=42.8

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCc----eecC--CCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGF----TEEN--GTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~----~~~~--~~~~~~~e~i~~ADvI  182 (313)
                      .||+|||. |.+|.++|..|...      ++  ++++ .+.++ ....+.+.--    ....  -...+..|.+++||+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~------~~~~elvL-iDi~~-~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv   72 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTL-YDIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV   72 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEE-EESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhC------CccceEEE-Eeccc-cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence            38999995 99999999999987      76  4444 44432 2333332211    0000  0123557889999999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      +++.-
T Consensus        73 Vitag   77 (144)
T d1mlda1          73 VIPAG   77 (144)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            99753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.16  E-value=0.00079  Score=54.36  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC--C-----ceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G-----FTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~--G-----~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      +||+|||.|.+|.++|..|...      ++ ++++.+.........+.+.  .     ....-....+. +.+++||+|+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvv   74 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV   74 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEE
Confidence            6999999999999999998877      65 6544443333323223221  1     00000001233 5578999999


Q ss_pred             Eccc
Q 021356          184 LLIS  187 (313)
Q Consensus       184 LavP  187 (313)
                      ++..
T Consensus        75 itag   78 (142)
T d1uxja1          75 VTSG   78 (142)
T ss_dssp             ECCS
T ss_pred             Eeee
Confidence            9883

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.14  E-value=0.00068  Score=55.54  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCCEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL  183 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i~~ADvIi  183 (313)
                      .||+|||.|.+|.++|..|...      ++ ++.+.+.........+.+.       +.... -...+..+.+++||+|+
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~-v~~~~~~~~~~~advvv   76 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK-VSGSNTYDDLAGADVVI   76 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCC-EEEECCGGGGTTCSEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcE-EEecccccccCCCcEEE
Confidence            7999999999999999888777      65 4444443333222222221       11000 00124457789999999


Q ss_pred             Eccc
Q 021356          184 LLIS  187 (313)
Q Consensus       184 LavP  187 (313)
                      ++.-
T Consensus        77 itag   80 (150)
T d1t2da1          77 VTAG   80 (150)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            9874

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.07  E-value=0.00097  Score=54.00  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=41.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCc-ccHHHHHH-------CCceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS-RSFAEARA-------AGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~-~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      |||+|||.|.+|.++|..|...      +.  ++.+ .|.++ .....+.+       ......-....+ .|.+++||+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL-~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adi   72 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIAL-VDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEI   72 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------SCCSEEEE-ECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhc------CcCceEEE-EecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccE
Confidence            7999999999999999998877      65  4544 44433 22222211       111000000123 468999999


Q ss_pred             EEEccc
Q 021356          182 VLLLIS  187 (313)
Q Consensus       182 IiLavP  187 (313)
                      |+++.-
T Consensus        73 Vvitag   78 (142)
T d1ojua1          73 IVVTAG   78 (142)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999774

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00057  Score=57.34  Aligned_cols=77  Identities=16%  Similarity=0.084  Sum_probs=59.7

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+++| |+|.|||-+. +|..++..|...      |..|.+....                   ..++.+.+++||+||.
T Consensus        33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~   86 (166)
T d1b0aa1          33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV   86 (166)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred             ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence            46899 9999999775 999999999988      8887554322                   1256778899999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      ++.-...   +.  .+++|+|++|+|++-
T Consensus        87 a~G~p~~---i~--~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          87 AVGKPGF---IP--GDWIKEGAIVIDVGI  110 (166)
T ss_dssp             CSCCTTC---BC--TTTSCTTCEEEECCC
T ss_pred             hccCccc---cc--ccccCCCcEEEecCc
Confidence            9975432   22  357899999999863

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.04  E-value=0.00024  Score=65.85  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=64.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEc
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      .++++|||.|.|+..+++.+...+     ++ +|.++.+..+...+.+.+    .|+..  ..+.+.++++++||+|+.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceeec
Confidence            389999999999999999987642     55 455555543333333322    24432  1256899999999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      |+......+++  .+.+|||+.|.-+++.
T Consensus       201 Tas~s~~Pv~~--~~~l~pG~hI~aiGs~  227 (340)
T d1x7da_         201 TADKAYATIIT--PDMLEPGMHLNAVGGD  227 (340)
T ss_dssp             CCCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred             cccCCCCcccc--hhhcCCCCEEeecccc
Confidence            96543223333  2468999998877764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=4.4e-05  Score=62.99  Aligned_cols=79  Identities=13%  Similarity=0.237  Sum_probs=50.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccch
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~~  189 (313)
                      .+|||||+|.||...++.+++. .+.  ..-.++..+...+   .+...++.     ..+.+|++.  +.|+|++++|+.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~-~~~--~~~~~~~~~~~~~---~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~   76 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDP-RSA--AFLNLIGFVSRRE---LGSLDEVR-----QISLEDALRSQEIDVAYICSESS   76 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSH-HHH--TTEEEEEEECSSC---CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred             cEEEEEcCCHHHHHHHHHHHhC-CCC--cEEEEEeccchHH---HHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence            5899999999999998888764 100  1112233322211   11112232     347888875  568999999999


Q ss_pred             hHHHHHHHHHhc
Q 021356          190 AQADNYEKIFSC  201 (313)
Q Consensus       190 a~~~vi~ei~~~  201 (313)
                      .+.+++.+.++.
T Consensus        77 ~H~~~~~~al~~   88 (172)
T d1lc0a1          77 SHEDYIRQFLQA   88 (172)
T ss_dssp             GHHHHHHHHHHT
T ss_pred             cccccccccccc
Confidence            998887766554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.96  E-value=0.0029  Score=53.14  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceec-----------C--CCcCCHHhhh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------N--GTLGDIYETI  176 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~--~~~~~~~e~i  176 (313)
                      |-||||.|+|.||+.+++.+.+.     .+++++..++..+... ......+....           +  ....+.+++.
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~   75 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI   75 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh
Confidence            45899999999999999999875     2567655555543222 22222221100           0  0123667778


Q ss_pred             ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       177 ~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      .++|+|+-|+|.....+..+.++   +.|+=++.+++
T Consensus        76 ~~vDiViecTG~f~~~e~a~~hl---~~G~KvIi~~~  109 (178)
T d1b7go1          76 KTSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG  109 (178)
T ss_dssp             HHCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred             hcCCEEEECCCCcCCHHHHHHHH---HcCCEEEEECC
Confidence            89999999999876655555444   34544444443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00022  Score=59.50  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=61.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccH---HHHHHC----CceecCCCcC---CHHh
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAA----GFTEENGTLG---DIYE  174 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~---~~A~~~----G~~~~~~~~~---~~~e  174 (313)
                      .+++| +++.|||.|-.|.+++..|.+.      |. ++.+.+|..+...   ..+.+.    ..........   ...+
T Consensus        14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T d1vi2a1          14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE   86 (182)
T ss_dssp             CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence            46889 9999999999999999999998      87 5667777643221   122221    1110000011   2345


Q ss_pred             hhccCCEEEEcccchhHHH---HHHHHHhcCCCCcEEEEec
Q 021356          175 TISGSDLVLLLISDAAQAD---NYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       175 ~i~~ADvIiLavP~~a~~~---vi~ei~~~mk~gaiLid~~  212 (313)
                      .+.++|+||-++|......   .+..-...++++.+++|+.
T Consensus        87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  127 (182)
T ss_dssp             HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred             hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence            6789999999999764321   1111124567777777764

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.0013  Score=54.50  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=56.2

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhh
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETI  176 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i  176 (313)
                      ..++- .||+|||.|.+|.++|..|...      ++  ++++.+.........+.+.       +... . ...+..+.+
T Consensus        15 ~~~~~-~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~-~~~~d~~~~   85 (159)
T d2ldxa1          15 DKLSR-CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-I-VFGKDYNVS   85 (159)
T ss_dssp             CCCCC-CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-E-EEESSGGGG
T ss_pred             ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-E-Eeccchhhh
Confidence            34455 7999999999999999999887      76  5544443322222222221       1100 0 012234567


Q ss_pred             ccCCEEEEcccc------------hhHHHHHHHHHhcC---CCCcEEEEec
Q 021356          177 SGSDLVLLLISD------------AAQADNYEKIFSCM---KPNSILGLSH  212 (313)
Q Consensus       177 ~~ADvIiLavP~------------~a~~~vi~ei~~~m---k~gaiLid~~  212 (313)
                      ++||+|+++.-.            ..-.+++.++.+.+   .|+.+++.++
T Consensus        86 ~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          86 ANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             TTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            999999997632            11223444544433   5677776554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0012  Score=55.37  Aligned_cols=76  Identities=16%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      .+|+| |++.|||-+ ..|..+|..|...      |..|.+....                   ..+..+.+++||+|+.
T Consensus        35 i~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~   88 (170)
T d1a4ia1          35 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV   88 (170)
T ss_dssp             CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred             ccccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhh
Confidence            47899 999999987 5999999999998      8877654332                   2256678899999999


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++.-...   ++  .+++|+|++|+|++
T Consensus        89 a~G~~~~---i~--~~~vk~g~iviDvg  111 (170)
T d1a4ia1          89 ATGQPEM---VK--GEWIKPGAIVIDCG  111 (170)
T ss_dssp             CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred             ccccccc---cc--cccccCCCeEeccC
Confidence            9986432   32  35789999999995

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.91  E-value=0.0011  Score=54.40  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV  182 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~ADvI  182 (313)
                      +| .+|.|+|.|.+|...++.++..      |.++++..+.++...+.+++.|..+- +....+..+.++     ..|+|
T Consensus        28 ~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~v  100 (174)
T d1f8fa2          28 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA  100 (174)
T ss_dssp             TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred             CC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence            57 9999999999999999999999      98777777776677788888885320 011123333332     26888


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      |-++....   .++...+.++++-.++.+
T Consensus       101 id~~G~~~---~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         101 LESTGSPE---ILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EECSCCHH---HHHHHHHTEEEEEEEEEC
T ss_pred             EEcCCcHH---HHHHHHhcccCceEEEEE
Confidence            88776543   344445556666555543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00078  Score=54.29  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |||+|||.|.+|.++|..|...      +.  ++.+.+.........+.+.    .+........+..+.+++||+|+++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit   74 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA   74 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence            6999999999999999988877      64  5544443322222222221    1110000012335678999999998


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      .
T Consensus        75 a   75 (140)
T d1a5za1          75 A   75 (140)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.85  E-value=0.00098  Score=57.58  Aligned_cols=84  Identities=8%  Similarity=0.115  Sum_probs=53.9

Q ss_pred             CEEEEEcccchHHHH----HHHHHhchhhhcCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQ----AQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~Al----A~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiL  184 (313)
                      .+|||||+|.+|+-+    ..+++..    ..+++++...+++.+. .+.+.+.++.. .....+.+|+++  +-|+|++
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i   91 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV   91 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence            689999999865443    4445443    1256766445554433 34455666532 112468888885  5789999


Q ss_pred             cccchhHHHHHHHHHh
Q 021356          185 LISDAAQADNYEKIFS  200 (313)
Q Consensus       185 avP~~a~~~vi~ei~~  200 (313)
                      ++|+..+.+.....++
T Consensus        92 ~tp~~~h~~~~~~al~  107 (237)
T d2nvwa1          92 SVKVPEHYEVVKNILE  107 (237)
T ss_dssp             CSCHHHHHHHHHHHHH
T ss_pred             cCCCcchhhHHHHHHH
Confidence            9999999887765443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.76  E-value=0.0011  Score=58.12  Aligned_cols=75  Identities=15%  Similarity=0.118  Sum_probs=53.2

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhh-ccCCEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETI-SGSDLV  182 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i-~~ADvI  182 (313)
                      -.+|+| ++|.|-|+|++|..+|+.|.+.      |.++++...+ ....+ .....|..     ..+.++++ .+||++
T Consensus        34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~-~~~~~~~~~~~g~~-----~~~~~~~~~~~cDIl  100 (230)
T d1leha1          34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVN-KAAVSAAVAEEGAD-----AVAPNAIYGVTCDIF  100 (230)
T ss_dssp             SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHHCCE-----ECCGGGTTTCCCSEE
T ss_pred             CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeeccc-HHHHHHHHHhcCCc-----ccCCcccccccccEe
Confidence            367999 9999999999999999999999      9987655443 33333 33334554     23455544 489999


Q ss_pred             EEcccchhHH
Q 021356          183 LLLISDAAQA  192 (313)
Q Consensus       183 iLavP~~a~~  192 (313)
                      +-|--...+.
T Consensus       101 ~PcA~~~~I~  110 (230)
T d1leha1         101 APCALGAVLN  110 (230)
T ss_dssp             EECSCSCCBS
T ss_pred             cccccccccC
Confidence            9887665543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.73  E-value=0.0077  Score=48.40  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec---CCCcCCHHh---hh-----
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI-----  176 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---~~~~~~~~e---~i-----  176 (313)
                      -+| .++.|+|.|.+|...++.++..      |.+|++ .+.++...+.+++.|....   +....+..+   .+     
T Consensus        25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~-v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g   96 (170)
T d1e3ja2          25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVC-TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG   96 (170)
T ss_dssp             CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEE-EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCC-CEEEEEcccccchhhHhhHhhh------cccccc-cchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence            367 8999999999999999999998      988655 4555566778888875310   111112222   11     


Q ss_pred             ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       177 ~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ...|+||-++...   ..++.....++++-.++..+
T Consensus        97 ~g~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          97 DLPNVTIDCSGNE---KCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECS
T ss_pred             cCCceeeecCCCh---HHHHHHHHHHhcCCceEEEe
Confidence            2478888877653   24455555667776665443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0023  Score=52.11  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             CCEEEEEcc-cchHHHHHHHHHhc--hhhhcCCcEEEEEecCCcc--cHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          111 INQIGVIGW-GSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       111 ikkIgIIG~-G~mG~AlA~~Lr~~--~~~~~~G~~Vivg~r~~~~--s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |++|||||. |..|+.+.+.|.+.  +.    -.++.....+...  ............    .....+.++++|++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p----~~~l~~~~ss~s~g~~~~~~~~~~~~~----~~~~~~~~~~~DivF~a   72 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFD----AIRPVFFSTSQLGQAAPSFGGTTGTLQ----DAFDLEALKALDIIVTC   72 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGG----GSEEEEEESSSTTSBCCGGGTCCCBCE----ETTCHHHHHTCSEEEEC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCC----eeEEEEeeccccccccccccCCceeee----cccchhhhhcCcEEEEe
Confidence            689999995 99999999866532  00    1134333322111  111111111111    11222457899999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|.....++.+++.+. ..+.+|+|.++.
T Consensus        73 ~~~~~s~~~~~~~~~~-g~~~~VID~Ss~  100 (146)
T d1t4ba1          73 QGGDYTNEIYPKLRES-GWQGYWIDAASS  100 (146)
T ss_dssp             SCHHHHHHHHHHHHHT-TCCCEEEECSST
T ss_pred             cCchHHHHhhHHHHhc-CCCeecccCCcc
Confidence            9987777777766542 233578887754

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.67  E-value=0.0032  Score=50.05  Aligned_cols=87  Identities=17%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      ++|+|||.    |..|..+.++|++.      | .+|+-.+.+. +..     .|...    ..++.|+=...|++++++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~-~~i-----~G~~~----y~sl~dlp~~vDlvvi~v   72 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKE-EEV-----QGVKA----YKSVKDIPDEIDLAIIVV   72 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSC-SEE-----TTEEC----BSSTTSCSSCCSEEEECS
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCc-ccc-----CCeEe----ecchhhcCCCCceEEEec
Confidence            99999996    89999999999876      5 4554444332 211     45553    567888777899999999


Q ss_pred             cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          187 SDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |+....+++++..+. .-..+++.++|+.
T Consensus        73 p~~~~~~~~~~~~~~-g~~~~vi~s~Gf~  100 (129)
T d2csua1          73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG  100 (129)
T ss_dssp             CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred             ChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence            999999999877653 2345777788873

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.0015  Score=52.33  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=77.1

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||.    +..|..+.++|++.      |+++....-+...    ..-.|...    ..++.|+-..-|++++++|
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~~----~~i~g~~~----~~~l~~i~~~iD~v~v~~p   79 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQG----EELFGEEA----VASLLDLKEPVDILDVFRP   79 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGTT----SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecccc----ceeeceec----ccchhhccCCCceEEEecc
Confidence            89999996    78999999999999      9987655432110    01135442    4577787778899999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHH
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV  249 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~  249 (313)
                      +....+++++.... ....+ ....|+.-..+.+  ..-..++++|  +||++.-+-.++|.
T Consensus        80 ~~~v~~~v~~~~~~-g~k~i-~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~  135 (136)
T d1iuka_          80 PSALMDHLPEVLAL-RPGLV-WLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR  135 (136)
T ss_dssp             HHHHTTTHHHHHHH-CCSCE-EECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh-CCCeE-EEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence            99999999876653 33344 4455653222221  0112467777  66776666556664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.00084  Score=55.27  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++ ++|.|||.|-.+.|++..|++.      |. ++.+.+|..++....+...+...    ....  -..++|+||-++|
T Consensus        16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp   82 (167)
T d1npya1          16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS   82 (167)
T ss_dssp             TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred             CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence            56 8999999999999999999998      87 67777776554445555555542    1121  2368999999999


Q ss_pred             ch
Q 021356          188 DA  189 (313)
Q Consensus       188 ~~  189 (313)
                      ..
T Consensus        83 iG   84 (167)
T d1npya1          83 IG   84 (167)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.006  Score=48.56  Aligned_cols=77  Identities=14%  Similarity=0.031  Sum_probs=49.7

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc---HHHHHHCCceecCCCcCCHH----hhhccCCEEEEc
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIY----ETISGSDLVLLL  185 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~----e~i~~ADvIiLa  185 (313)
                      .|-|+|||.+|..+++.|.+.      |.++++........   .+.....|+..-.+...+.+    .-+.+||.|+++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            588999999999999999998      98876665443222   22333345422112222322    235789999999


Q ss_pred             ccchhHHHHH
Q 021356          186 ISDAAQADNY  195 (313)
Q Consensus       186 vP~~a~~~vi  195 (313)
                      +++....-.+
T Consensus        79 ~~~d~~n~~~   88 (153)
T d1id1a_          79 SDNDADNAFV   88 (153)
T ss_dssp             SSCHHHHHHH
T ss_pred             cccHHHHHHH
Confidence            9987654433

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.63  E-value=0.0012  Score=54.73  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--C--ceecCC-CcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENG-TLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~~~-~~~~~~e~i~~  178 (313)
                      ..++. +||+|||.|.+|.++|..|...      |+  ++++.+...+....++.+.  .  +..... ......+.+++
T Consensus        16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~   88 (160)
T d1i0za1          16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN   88 (160)
T ss_dssp             CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred             ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence            34556 8999999999999999999988      76  5544443322222233221  1  000000 01223466899


Q ss_pred             CCEEEEcc
Q 021356          179 SDLVLLLI  186 (313)
Q Consensus       179 ADvIiLav  186 (313)
                      ||+|+++.
T Consensus        89 adiVVitA   96 (160)
T d1i0za1          89 SKIVVVTA   96 (160)
T ss_dssp             CSEEEECC
T ss_pred             ccEEEEec
Confidence            99999955

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.56  E-value=0.0075  Score=48.47  Aligned_cols=86  Identities=10%  Similarity=0.055  Sum_probs=63.4

Q ss_pred             CEEEEEcc----cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      ++|+|||.    +..|..++++|++.      |++|+-.+.+. ..     -.|...    ..++.|+-..-|++++++|
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~~-~~-----i~G~~~----~~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPKY-EE-----VLGRKC----YPSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-SE-----ETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCcc-cc-----cCCCcc----cccccccCccceEEEEEeC
Confidence            89999995    57999999999999      99865444332 21     145553    5688888888999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +..+.+++++.... ....+++-.+++
T Consensus        84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~  109 (139)
T d2d59a1          84 PKLTMEYVEQAIKK-GAKVVWFQYNTY  109 (139)
T ss_dssp             HHHHHHHHHHHHHH-TCSEEEECTTCC
T ss_pred             HHHHHHHHHHHHHh-CCCEEEEecccc
Confidence            99999999987653 333444445555

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.55  E-value=0.0013  Score=54.28  Aligned_cols=94  Identities=20%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCCE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~ADv  181 (313)
                      +| .+|.|+|.|-+|...++.++..      |...++..+.+++..+.+++.|..+- +....+..+.+      ...|+
T Consensus        27 ~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          27 MG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred             CC-CEEEEEcCCcchhhhhhhhhcc------cccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcce
Confidence            57 9999999999999999999998      97444566666666788888885320 01112333322      23899


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ||-++....   .+++....++|+-.++.++
T Consensus       100 vid~~g~~~---~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         100 VIMAGGGSE---TLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred             EEEccCCHH---HHHHHHHHHhcCCEEEEEe
Confidence            999997543   3455556677777776554

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.55  E-value=0.0012  Score=53.69  Aligned_cols=69  Identities=23%  Similarity=0.212  Sum_probs=41.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHH--HCC--ceec-CCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEE-NGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~-~~~~~~~~e~i~~ADvIiL  184 (313)
                      .||+|||.|.+|.++|..|...      ++  ++++.+.........+.  ++.  +... .-...+..+.+++||+|++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVi   75 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI   75 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEE
Confidence            6899999999999999999887      66  55444433222222222  111  1100 0001233456889999999


Q ss_pred             cc
Q 021356          185 LI  186 (313)
Q Consensus       185 av  186 (313)
                      +.
T Consensus        76 ta   77 (143)
T d1llda1          76 TA   77 (143)
T ss_dssp             CC
T ss_pred             ec
Confidence            76

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0038  Score=49.59  Aligned_cols=98  Identities=14%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a  190 (313)
                      |||+|+|+ |.||+++++.+.+.      +++++.+.+.+                     ..+.+.++|+||==+.|..
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA   53 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence            68999996 99999999998888      88876665432                     1233567999999999999


Q ss_pred             HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCC
Q 021356          191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM  240 (313)
Q Consensus       191 ~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~p  240 (313)
                      ..++++....+=+  .+|+=+.|+.-.+++... ...+++++ ...||++
T Consensus        54 ~~~~l~~~~~~~~--p~ViGTTG~~~~~~~~i~-~~ak~~pv-~~a~N~s   99 (128)
T d1vm6a3          54 LPKTVDLCKKYRA--GLVLGTTALKEEHLQMLR-ELSKEVPV-VQAYSRT   99 (128)
T ss_dssp             HHHHHHHHHHHTC--EEEECCCSCCHHHHHHHH-HHTTTSEE-EECSCTH
T ss_pred             HHHHHHHHHhcCC--CEEEEcCCCCHHHHHHHH-HHHhhCCE-EeeeccC
Confidence            8888885554322  356667787543332211 11334443 4456654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0025  Score=52.33  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc---------
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---------  177 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~---------  177 (313)
                      -+| .+|.|+|.|.+|...++.++..      |...++..+.+++..+.+++.|...- +....+..+..+         
T Consensus        27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCC-CEEEEECCCccchhheeccccc------ccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCC
Confidence            368 9999999999999999999998      97433455555666788888875310 001112222211         


Q ss_pred             cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      ..|+||-++.-..   .++...+.+++|-.++.+
T Consensus       100 g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         100 GADFILEATGDSR---ALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             CEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence            3677777775432   234444555666555443

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.49  E-value=0.0097  Score=46.95  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             ccccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCC------cccHHHHHHC----Ccee
Q 021356          105 PDAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFAEARAA----GFTE  164 (313)
Q Consensus       105 ~~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~------~~s~~~A~~~----G~~~  164 (313)
                      +..+.+ ++|+|+|+          ++-.-.+++.|++.      |.+|.+.+..-      ....+.....    +.. 
T Consensus         8 i~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-   79 (136)
T d1mv8a3           8 ITSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL-   79 (136)
T ss_dssp             HTTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT-
T ss_pred             HHhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce-
Confidence            356778 99999997          56777888888888      99876665310      0001111100    111 


Q ss_pred             cCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                         ...+++++++++|+|+++++-....+    +...++++.+|+|.-|+.
T Consensus        80 ---~~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~~  123 (136)
T d1mv8a3          80 ---LVSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGFM  123 (136)
T ss_dssp             ---BCSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSCC
T ss_pred             ---eehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCCC
Confidence               14589999999999999999877544    344577889999998873

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.47  E-value=0.0011  Score=60.28  Aligned_cols=93  Identities=17%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccH---HHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~---~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +.++++|||.|.|+..+++.+....     .+ +|.++.|..+...   +.....++..    ..+.++++.+||+|+.+
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEEC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEe
Confidence            3388999999999999999987741     44 5666665533222   2333344432    33667889999999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL  215 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~  215 (313)
                      |+-..  .+++  .+.++||+.|.-+++..
T Consensus       195 T~s~~--P~~~--~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         195 TPSRK--PVVK--AEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CCCSS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred             ccCcc--cccc--hhhcCCCCeEeecCCcc
Confidence            98432  1332  24689999988777653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.40  E-value=0.0018  Score=52.58  Aligned_cols=69  Identities=20%  Similarity=0.163  Sum_probs=40.5

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCccc--HHHHHHC----CceecCCC----cCCHHhhhcc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAA----GFTEENGT----LGDIYETISG  178 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s--~~~A~~~----G~~~~~~~----~~~~~e~i~~  178 (313)
                      |||+|||. |.+|.++|..|...      +.  ++.+.+......  ...+.+.    .....+..    ..+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~   74 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence            68999995 99999999999887      75  555544332111  1111110    01000000    1224568899


Q ss_pred             CCEEEEcc
Q 021356          179 SDLVLLLI  186 (313)
Q Consensus       179 ADvIiLav  186 (313)
                      ||+|+++.
T Consensus        75 aDvVVitA   82 (145)
T d1hyea1          75 SDVVIITS   82 (145)
T ss_dssp             CSEEEECC
T ss_pred             ceEEEEec
Confidence            99999973

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0081  Score=45.28  Aligned_cols=70  Identities=21%  Similarity=0.240  Sum_probs=51.4

Q ss_pred             cCCCCEEEEEcccchH-HHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          108 FNGINQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       108 l~GikkIgIIG~G~mG-~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      +.-+++|=|||.|-+| .++|+.|++.      |++|...+....+..+..++.|+...   .....+.+++.|+||...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECT
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECC
Confidence            3445999999999999 6679999999      99876555544555566677897642   334455678999998854

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.34  E-value=0.002  Score=52.70  Aligned_cols=96  Identities=13%  Similarity=0.001  Sum_probs=54.8

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhc--hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD  188 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~--~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~  188 (313)
                      ||||||| .|..|+-+.+.|.+.  +.    ..++.....+...  .+....+............+.++++|+|++|+|.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~~~~--gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~   74 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQIG--VPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG   74 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSCCS--SBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEecccccc--ccccccCCcceeeecccchhhhccccEEEEecCc
Confidence            6899999 799999999877542  11    1243322222110  0000111110000011223567899999999999


Q ss_pred             hhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          189 AAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       189 ~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ....++..++.+. ..+.+|+|.++.
T Consensus        75 ~~s~~~~~~l~~~-g~~~~VIDlSsd   99 (147)
T d1mb4a1          75 SYTEKVYPALRQA-GWKGYWIDAAST   99 (147)
T ss_dssp             HHHHHHHHHHHHT-TCCSEEEESSST
T ss_pred             hHHHHHhHHHHHc-CCceEEEeCCcc
Confidence            8888888776653 223578887753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.32  E-value=0.0054  Score=47.60  Aligned_cols=85  Identities=12%  Similarity=0.183  Sum_probs=52.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEccc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADvIiLavP  187 (313)
                      |.|-|+|||.+|..+++.|+..      +.  ++. +.++...+.....|+..-.+...+.+-    -+.+|+.++++++
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~------~i--~vi-~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS------EV--FVL-AEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG------GE--EEE-ESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHcCC------CC--EEE-EcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            4578999999999999999766      53  333 344444556667775321222333332    2678999999999


Q ss_pred             chhHHHHHHHHHhcCCCC
Q 021356          188 DAAQADNYEKIFSCMKPN  205 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~g  205 (313)
                      +....-.+-.....+.|.
T Consensus        72 ~d~~n~~~~~~~r~~~~~   89 (129)
T d2fy8a1          72 SDSETIHCILGIRKIDES   89 (129)
T ss_dssp             SHHHHHHHHHHHHHHCSS
T ss_pred             chhhhHHHHHHHHHHCCC
Confidence            877655443333333343

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.25  E-value=0.0093  Score=49.08  Aligned_cols=75  Identities=19%  Similarity=0.056  Sum_probs=40.4

Q ss_pred             CEEEEEcccchHH--HHHHHHHhchhhhcCCcEEEEEecCCccc-HHHH---------HHCCceecCCCcCCHHhhhccC
Q 021356          112 NQIGVIGWGSQGP--AQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEA---------RAAGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       112 kkIgIIG~G~mG~--AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A---------~~~G~~~~~~~~~~~~e~i~~A  179 (313)
                      +||+|||.|+.|.  +++..++.. ++.  ....++..|.++.. ..++         .+.+.........+..+.+++|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~-~~~--~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~ga   78 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRY-HEL--PVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA   78 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTT-TTC--CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhc-ccc--CCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCC
Confidence            6899999998874  444445443 100  12233444543321 1111         1122211011235778899999


Q ss_pred             CEEEEcccch
Q 021356          180 DLVLLLISDA  189 (313)
Q Consensus       180 DvIiLavP~~  189 (313)
                      |+|+++....
T Consensus        79 DvVv~ta~~~   88 (169)
T d1s6ya1          79 DFVTTQFRVG   88 (169)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEEccccC
Confidence            9999998643

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.21  E-value=0.011  Score=45.92  Aligned_cols=85  Identities=9%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             CEEEEEc----ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG----~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      |+|+|||    .+..|..+.++|++.      |++|+ ...+..+..     .|...    ..++.|+-..-|++++++|
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~-pVnP~~~~i-----~G~~~----y~sl~~lp~~~D~vvi~vp   65 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVL-PVNPNYDEI-----EGLKC----YRSVRELPKDVDVIVFVVP   65 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEE-EECTTCSEE-----TTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEE-EEccccccc-----cCccc----cccchhccccceEEEEEeC
Confidence            7899999    467899999999999      99854 443322221     46553    4578887778899999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +....+++++.... ....++...++
T Consensus        66 ~~~~~~~l~~~~~~-g~k~v~~~~g~   90 (116)
T d1y81a1          66 PKVGLQVAKEAVEA-GFKKLWFQPGA   90 (116)
T ss_dssp             HHHHHHHHHHHHHT-TCCEEEECTTS
T ss_pred             HHHHHHHHHHHHhc-CCceEEeccch
Confidence            99999999976653 23344444333

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.012  Score=48.44  Aligned_cols=74  Identities=18%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             CEEEEEcccchHHHHHH--HHHhchhhhcCCcEEEEEecCCcccHHH--------HHHCCceecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~--------A~~~G~~~~~~~~~~~~e~i~~ADv  181 (313)
                      +||+|||.|+.|.+.+.  .+...  +...+.++ +..|.+++..+.        ....+...+-....+.+|++++||+
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~--~~l~~~ei-vL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTV-TLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEE-EEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhc--cccCCCEE-EEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence            89999999999976532  23221  00112355 445554432211        1112211000123588999999999


Q ss_pred             EEEcccc
Q 021356          182 VLLLISD  188 (313)
Q Consensus       182 IiLavP~  188 (313)
                      |+.+.-.
T Consensus        80 Vv~~~~~   86 (171)
T d1obba1          80 VINTAMV   86 (171)
T ss_dssp             EEECCCT
T ss_pred             Eeeeccc
Confidence            9998654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.10  E-value=0.026  Score=45.21  Aligned_cols=92  Identities=20%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC---CCcCCHHhhh-----ccC
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLGDIYETI-----SGS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~~~~~~~e~i-----~~A  179 (313)
                      -+| .+|.|+|.|-+|...++.++..      |..+++..+.+++..+.+++.|..+--   ....+..+.+     ...
T Consensus        27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~   99 (176)
T d2fzwa2          27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV   99 (176)
T ss_dssp             CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence            367 9999999999999999999998      976667777777778889998854210   0011222333     357


Q ss_pred             CEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          180 DLVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      |+|+-++....   .++.....+++|..++
T Consensus       100 D~vid~~G~~~---~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         100 DYSFECIGNVK---VMRAALEACHKGWGVS  126 (176)
T ss_dssp             SEEEECSCCHH---HHHHHHHTBCTTTCEE
T ss_pred             cEeeecCCCHH---HHHHHHHhhcCCceeE
Confidence            99999887543   3444555566664444

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0074  Score=50.47  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=56.8

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC--CcccHHHHHH--CCceecCCCcCCHHhhhccCCEEEEc
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~--~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |++||||| .|..|+-+.+.|.+.     +.+++.....+  ..+.......  .+-..  -...+.+++.+++|+|+++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~H-----P~~ei~~l~s~~~aG~~i~~~~p~~~~~~~--~~~~~~~~~~~~~dvvf~a   73 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSI--LSEFDPEKVSKNCDVLFTA   73 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCB--CBCCCHHHHHHHCSEEEEC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhC-----CCceEEEeeccccCCCcccccCchhhcccc--ccccCHhHhccccceEEEc
Confidence            68999999 899999999998764     13454333222  1122221110  11110  1124666777899999999


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|.....++..+    . .+..|+|.++-
T Consensus        74 ~p~~~s~~~~~~----~-~~~~VIDlSad   97 (176)
T d1vkna1          74 LPAGASYDLVRE----L-KGVKIIDLGAD   97 (176)
T ss_dssp             CSTTHHHHHHTT----C-CSCEEEESSST
T ss_pred             cccHHHHHHHHh----h-ccceEEecCcc
Confidence            998876655542    2 47788988763

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.01  E-value=0.027  Score=46.53  Aligned_cols=95  Identities=15%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCC--------------cCCHHhh
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGT--------------LGDIYET  175 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~--------------~~~~~e~  175 (313)
                      |++|||-|+|.||+.+.+.+...     .+++++..++..+ .....+.+.++......              ..+..++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM   75 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence            68999999999999999988765     1466655555433 22345555554321000              1244566


Q ss_pred             hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       176 i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      .+++|+|+=|+|.....+-.+..+   +.|+-++..++
T Consensus        76 ~~~vDvViEcTG~f~~~~~~~~hl---~~G~K~vi~~~  110 (171)
T d1cf2o1          76 LDEADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGG  110 (171)
T ss_dssp             HHTCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred             hcCCCEEEEccCCCCCHHHHHHHH---HcCCCEEEECC
Confidence            788999999999876655554443   34554554443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.99  E-value=0.0072  Score=49.02  Aligned_cols=47  Identities=19%  Similarity=0.248  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .+|.|+|.|.+|...++.++..      |...++..+.+++..+.+++.|.
T Consensus        32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga   78 (172)
T d1h2ba2          32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGA   78 (172)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTC
T ss_pred             CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhccc
Confidence            57 9999999999999999999988      87656666666666777777764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.95  E-value=0.03  Score=45.88  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC-c-C-CHHhhh-----ccCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-L-G-DIYETI-----SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~-~-~-~~~e~i-----~~AD  180 (313)
                      +| .++.|+|.|-+|...++.++..      |...++..+.+++..+.+++.|..+-... . . ...+..     ...|
T Consensus        28 ~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          28 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCc
Confidence            67 9999999999999999999999      98656666666777889999986431000 0 0 112222     3568


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPN  205 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~g  205 (313)
                      +++-++....   .+++-...++++
T Consensus       101 ~vie~~G~~~---~~~~a~~~~~~g  122 (174)
T d1e3ia2         101 YSLDCAGTAQ---TLKAAVDCTVLG  122 (174)
T ss_dssp             EEEESSCCHH---HHHHHHHTBCTT
T ss_pred             EEEEecccch---HHHHHHHHhhcC
Confidence            8888876543   355555566664

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.94  E-value=0.0026  Score=52.38  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC------ceecCCCcCCHHhhhccC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG------FTEENGTLGDIYETISGS  179 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G------~~~~~~~~~~~~e~i~~A  179 (313)
                      .+++| +++.|||.|-.+.+++..|.+.      | +|.+.+|..++..+.+....      ... .....+.+....++
T Consensus        14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   84 (177)
T d1nvta1          14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGE-EVKFSGLDVDLDGV   84 (177)
T ss_dssp             CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHH-HEEEECTTCCCTTC
T ss_pred             CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhh-hhhhhhhhhccchh
Confidence            46899 9999999999999999998766      6 77788876443322222110      000 00123555677899


Q ss_pred             CEEEEcccchh
Q 021356          180 DLVLLLISDAA  190 (313)
Q Consensus       180 DvIiLavP~~a  190 (313)
                      |+||.++|...
T Consensus        85 dliIn~tp~g~   95 (177)
T d1nvta1          85 DIIINATPIGM   95 (177)
T ss_dssp             CEEEECSCTTC
T ss_pred             hhhccCCcccc
Confidence            99999999754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.024  Score=46.06  Aligned_cols=74  Identities=14%  Similarity=0.012  Sum_probs=41.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEEE
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |||+|||.|+.|.+++.............-++ +..|.+++..+.+.+       .....  ....+.++.+++||+|++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el-~L~Did~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVVi   77 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEV-IFYDIDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVIF   77 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEE-EEECSCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEE-EEEecCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEEE
Confidence            68999999999988875422210000001244 444554443332221       11111  113578899999999999


Q ss_pred             cccc
Q 021356          185 LISD  188 (313)
Q Consensus       185 avP~  188 (313)
                      +.-.
T Consensus        78 ta~~   81 (162)
T d1up7a1          78 QFRP   81 (162)
T ss_dssp             CCCT
T ss_pred             eccc
Confidence            8754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.91  E-value=0.03  Score=46.25  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=58.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCCceecC--------------CCcCCHHhhh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN--------------GTLGDIYETI  176 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~--------------~~~~~~~e~i  176 (313)
                      ++|||.|+|.||..+.+.+...     .+++++..++..+ .....+.+.++....              ....+..++.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL   77 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence            6899999999999999998765     1567655555433 223445555532100              0123566677


Q ss_pred             ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       177 ~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +++|+|+=|++..-..+-.+..+   +.|+-.+..+
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~hl---~~G~k~Vi~s  110 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLYE---KAGVKAIFQG  110 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHH---HHTCEEEECT
T ss_pred             ccCCEEEECCCCCCCHHHHHHHH---HcCCCEEEEC
Confidence            89999999999877666555433   3454444433

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0047  Score=51.18  Aligned_cols=71  Identities=23%  Similarity=0.317  Sum_probs=48.0

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhhccCCEEEEcc
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLI  186 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~i~~ADvIiLav  186 (313)
                      ||||.|+| .|.+|.++++.|.+.      |++|++..|+.++... ....++....+...   +++++++++|+|+.++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~   75 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhccc-ccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence            59999999 799999999999999      9998877775332111 11122211111222   3456899999999987


Q ss_pred             cc
Q 021356          187 SD  188 (313)
Q Consensus       187 P~  188 (313)
                      ..
T Consensus        76 g~   77 (205)
T d1hdoa_          76 GT   77 (205)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0027  Score=51.55  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCC-HHhhhccCCEEEEc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGD-IYETISGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~~~~~-~~e~i~~ADvIiLa  185 (313)
                      +| .++.|+|.|.+|...++.++..      |.+|++..+ +++..+.+++.|...- + ....+ .+......|+|+-+
T Consensus        27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~-~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~   98 (168)
T d1piwa2          27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISR-SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC   98 (168)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEES-SSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             CC-CEEEEECCCCcchhHHHHhhhc------ccccccccc-chhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence            67 9999999999999999999998      998766554 4566788888885310 0 00111 22334456888777


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +...... .++...+.++++-.++.+
T Consensus        99 ~~~~~~~-~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          99 ASSLTDI-DFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred             ecCCccc-hHHHHHHHhhccceEEEe
Confidence            5532211 133445556666555544

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0036  Score=52.41  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=60.1

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----CCcee-cCCCcCCHHhhhcc
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTE-ENGTLGDIYETISG  178 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~-~~~~~~~~~e~i~~  178 (313)
                      .+|+| |++.|||-++ +|..+|..|...      |..|......+.........     .+..+ ...+...+.+...+
T Consensus        25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~   97 (171)
T d1edza1          25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD   97 (171)
T ss_dssp             CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred             CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence            48999 9999999774 599999999988      87765554332110000000     00000 00000125667779


Q ss_pred             CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +|+||.+++....  .+  -.+++|+|++++|++..
T Consensus        98 aDIvIsavG~p~~--~i--~~d~ik~GavvIDvGi~  129 (171)
T d1edza1          98 SDVVITGVPSENY--KF--PTEYIKEGAVCINFACT  129 (171)
T ss_dssp             CSEEEECCCCTTC--CB--CTTTSCTTEEEEECSSS
T ss_pred             CCEEEEccCCCcc--cc--ChhhcccCceEeecccc
Confidence            9999999986431  01  12567999999999854

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.70  E-value=0.023  Score=45.12  Aligned_cols=93  Identities=15%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhhccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETISGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----e~i~~ADvIi  183 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|++. ..+++..+.+++.|...- +....+..    +.-.+.|.++
T Consensus        27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~-~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v   98 (168)
T d1rjwa2          27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAV-DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV   98 (168)
T ss_dssp             TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred             CC-CEEEEeecccchhhhhHHHhcC------CCeEecc-CCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence            67 9999999999999999999998      9986554 445566778888886421 11111222    2234567777


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ..+...   +.++.....++++..++..+
T Consensus        99 ~~~~~~---~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          99 VTAVSK---PAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             ESSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred             eecCCH---HHHHHHHHHhccCCceEecc
Confidence            766543   45667777788887776553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.67  E-value=0.037  Score=45.08  Aligned_cols=76  Identities=24%  Similarity=0.273  Sum_probs=53.2

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCC-CcCC--HHhhh-----cc
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-TLGD--IYETI-----SG  178 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~-~~~~--~~e~i-----~~  178 (313)
                      --+| .+|.|+|.|-+|...++.++..      |...++..+.+++..+.+++.|...--. ...+  .+++.     ..
T Consensus        25 ~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          25 VTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCC
Confidence            3467 9999999999999999999999      8765677777777788999998653100 0011  22222     24


Q ss_pred             CCEEEEcccch
Q 021356          179 SDLVLLLISDA  189 (313)
Q Consensus       179 ADvIiLavP~~  189 (313)
                      .|+|+-++...
T Consensus        98 ~d~vid~~g~~  108 (174)
T d1p0fa2          98 VDYAVECAGRI  108 (174)
T ss_dssp             BSEEEECSCCH
T ss_pred             CcEEEEcCCCc
Confidence            67887777654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.62  E-value=0.027  Score=45.30  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDS  133 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~  133 (313)
                      +||.|||. |.+|.+++..|...
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~   27 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAG   27 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc
Confidence            69999996 99999999999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.62  E-value=0.019  Score=42.79  Aligned_cols=66  Identities=20%  Similarity=0.068  Sum_probs=48.8

Q ss_pred             CEEEEEcccchHH-HHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      |+|=|||.|=+|. ++|+.|++.      |++|...++...+..+..++.|+...   .....+-+.++|+||...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEec
Confidence            7889999999997 789999999      99876555555555567778887531   223345578899998854

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.59  E-value=0.032  Score=44.98  Aligned_cols=76  Identities=22%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhh-----ccCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETI-----SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~---~~~~~e~i-----~~AD  180 (313)
                      +| .+|.|+|.|-+|...++.++..      |...++..+.+++..+.+++.|..+....   ....++..     ...|
T Consensus        28 ~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          28 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCC
Confidence            67 9999999999999999999998      87556677776777888999886531000   01122222     2478


Q ss_pred             EEEEcccchhH
Q 021356          181 LVLLLISDAAQ  191 (313)
Q Consensus       181 vIiLavP~~a~  191 (313)
                      +|+-++.....
T Consensus       101 ~vid~~G~~~~  111 (176)
T d2jhfa2         101 FSFEVIGRLDT  111 (176)
T ss_dssp             EEEECSCCHHH
T ss_pred             EEEecCCchhH
Confidence            88888776543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0049  Score=50.84  Aligned_cols=116  Identities=14%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH---HH-----HHHCCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AE-----ARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~-----A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      .+|+|+|+ |.||+++++.+.+.     .+++++.+.++.....   ..     ....+...    ..+.+++.+.+|+|
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi   75 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF   75 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence            68999995 99999999988765     1666655554321100   00     00111211    34667888999999


Q ss_pred             EEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCC
Q 021356          183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM  240 (313)
Q Consensus       183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~p  240 (313)
                      |=-+.|....+.++....+  .-.+|+=+.|+.-..++... ...+++.+ -..||+.
T Consensus        76 IDFs~p~~~~~~~~~a~~~--~~~~ViGTTG~~~~~~~~i~-~~a~~ipi-~~apN~S  129 (162)
T d1diha1          76 IDFTRPEGTLNHLAFCRQH--GKGMVIGTTGFDEAGKQAIR-DAAADIAI-VFAANFS  129 (162)
T ss_dssp             EECSCHHHHHHHHHHHHHT--TCEEEECCCCCCHHHHHHHH-HHTTTSCE-EECSCCC
T ss_pred             EEeccHHHHHHHHHHHHhc--cceeEEecCCCcHHHHHHHH-HHcCCCCE-EEEcccc
Confidence            9999998888877754443  12255557787532222111 12344554 5558774

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.51  E-value=0.014  Score=48.24  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             ccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----C--ceecC-CCcCCHHhhh
Q 021356          105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEEN-GTLGDIYETI  176 (313)
Q Consensus       105 ~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G--~~~~~-~~~~~~~e~i  176 (313)
                      ..+|+| |++-|.| .|-||.++|+.|.+.      |.+|++..|+.++..+.+.+.    .  +..-+ ....+.++++
T Consensus        18 ~~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (191)
T d1luaa1          18 GGSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV   90 (191)
T ss_dssp             TSCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT
T ss_pred             CCCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh
Confidence            468999 9999999 789999999999999      999888877644433322221    1  11000 1123455678


Q ss_pred             ccCCEEEEccc
Q 021356          177 SGSDLVLLLIS  187 (313)
Q Consensus       177 ~~ADvIiLavP  187 (313)
                      .+.|+||.+..
T Consensus        91 ~~iDilin~Ag  101 (191)
T d1luaa1          91 KGAHFVFTAGA  101 (191)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCcCeeeecCc
Confidence            89999988754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.51  E-value=0.038  Score=45.16  Aligned_cols=48  Identities=23%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      +| .+|.|+|.|-+|...++.++..      |...++..+.+++.++.|++.|..
T Consensus        29 ~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          29 PG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCc
Confidence            57 9999999999999999999999      875556777777888999999865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.011  Score=47.02  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=31.8

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEe
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL  147 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~  147 (313)
                      .-.|+| +++.|||.|.+|..-++.|.+.      |.+|.+..
T Consensus         8 ~~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva   43 (150)
T d1kyqa1           8 AHQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS   43 (150)
T ss_dssp             EECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred             heeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence            356999 9999999999999999999999      98876664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.48  E-value=0.013  Score=46.77  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh----ccCCEEE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL  183 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i----~~ADvIi  183 (313)
                      +| .+|.|+|.|.+|...++.++..      |.+|+.. +.++...+.+++.|...- +....+..+.+    ...|.++
T Consensus        27 ~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~-~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          27 PG-QWVAISGIGGLGHVAVQYARAM------GLHVAAI-DIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred             CC-CEEEEeeccccHHHHHHHHHHc------CCcccee-cchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence            57 9999999999999999999998      9886554 455566788888886320 11112332322    2345666


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      .++...   +.++...+.++++-.++.+
T Consensus        99 ~~~~~~---~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          99 VTAVSN---SAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             ECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred             cccccc---hHHHHHHHHhcCCcEEEEE
Confidence            655543   3455556667776655544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.013  Score=47.28  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL  185 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa  185 (313)
                      +| .+|.|+|.|.+|...++.++..      |.++++..++ ++..+.+++.|...-- ...+   ..+..+..|+++-+
T Consensus        30 ~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~-~~~~~~a~~lGad~~i-~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          30 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVV-NSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEE-ETTCHHHHHTTTTCEEEEEEC
T ss_pred             CC-CEEEEeccchHHHHHHHHhhcc------cccchhhccc-hhHHHHHhccCCcEEE-ECchhhHHHHhcCCCceeeee
Confidence            57 9999999999999999999999      9987765554 4556788888853100 0112   12234568888888


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +.....   ++.....++++-.++..
T Consensus       101 ~g~~~~---~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         101 VAAPHN---LDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             CSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred             eecchh---HHHHHHHHhcCCEEEEe
Confidence            874432   34444556666555544

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.41  E-value=0.024  Score=45.59  Aligned_cols=73  Identities=11%  Similarity=0.054  Sum_probs=40.3

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhc-hhhhcCCc-EEEEEecCCc-ccHHHHHH-----CCc--eecCCCcCCHHhhhccCC
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI-VVKVGLRKGS-RSFAEARA-----AGF--TEENGTLGDIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~-~~~~~~G~-~Vivg~r~~~-~s~~~A~~-----~G~--~~~~~~~~~~~e~i~~AD  180 (313)
                      +||.|||. |.+|.++|..|... +.  +... ..++-.+.+. ....++..     ..+  ........+.++.++++|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~--~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVF--GKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTT--CTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhc--CCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence            79999995 99999999998754 00  0011 1223333321 11111211     110  000011346778999999


Q ss_pred             EEEEcc
Q 021356          181 LVLLLI  186 (313)
Q Consensus       181 vIiLav  186 (313)
                      +|+++-
T Consensus        82 vVVita   87 (154)
T d5mdha1          82 VAILVG   87 (154)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            999976

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.39  E-value=0.038  Score=45.47  Aligned_cols=75  Identities=20%  Similarity=0.036  Sum_probs=40.0

Q ss_pred             CEEEEEcccchHHHHH-HHHHhchhhhcCCcEEEEEecCCcccHH--------HHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA-~~Lr~~~~~~~~G~~Vivg~r~~~~s~~--------~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      .||+|||.|+.|.+.+ ..+...+++. .+-++ +..|.+++..+        .....+.........+..|++++||+|
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~ei-vL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKL-KLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEE-EEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEE-EEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence            6899999999986633 2232221110 01244 44455443221        111112110011245888999999999


Q ss_pred             EEcccc
Q 021356          183 LLLISD  188 (313)
Q Consensus       183 iLavP~  188 (313)
                      +++.-.
T Consensus        82 vitag~   87 (167)
T d1u8xx1          82 MAHIRV   87 (167)
T ss_dssp             EECCCT
T ss_pred             EECCCc
Confidence            999754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.34  E-value=0.0063  Score=49.14  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=39.3

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcc--cHHHHHHC----CceecC-CCcCCHHhhhccCCE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAA----GFTEEN-GTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~--s~~~A~~~----G~~~~~-~~~~~~~e~i~~ADv  181 (313)
                      .||+||| .|.+|.++|..|...      ++  ++.+.+....+  ....+.+.    .+.... -...+. +.+++||+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi   73 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV   73 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence            4899999 699999999999887      65  44444322111  11122221    111000 012343 45789999


Q ss_pred             EEEcc
Q 021356          182 VLLLI  186 (313)
Q Consensus       182 IiLav  186 (313)
                      |+++.
T Consensus        74 Vvita   78 (142)
T d1o6za1          74 VVITA   78 (142)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99975

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.26  E-value=0.02  Score=47.76  Aligned_cols=97  Identities=21%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCC-CcCCHHhhh------ccCCE
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-TLGDIYETI------SGSDL  181 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~-~~~~~~e~i------~~ADv  181 (313)
                      +| .+|.|+|.|.+|...++.++..      |...++..+.++...+.|++.|...-.. ...+..+.+      ..+|+
T Consensus        25 ~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          25 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence            57 9999999999999999998887      7744556666666778899998653111 112332222      24799


Q ss_pred             EEEcccch------------hHHHHHHHHHhcCCCCcEEEEec
Q 021356          182 VLLLISDA------------AQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       182 IiLavP~~------------a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      ++-++--.            ...+.++.....++++-.|+.++
T Consensus        98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            99887522            12357777777788887776554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.23  E-value=0.067  Score=42.74  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT  163 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~  163 (313)
                      -+| .+|.|+|.|-+|...++.++..      |...++..+.+++..+.+++.|..
T Consensus        27 k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd   75 (175)
T d1cdoa2          27 EPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGAT   75 (175)
T ss_dssp             CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             CCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCc
Confidence            367 8999999999999999999988      765566777777778899999964

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.02  Score=46.14  Aligned_cols=71  Identities=21%  Similarity=0.148  Sum_probs=40.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--C---ceecCCCcCCHHhhhccCCEEEEc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G---FTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G---~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      |||+||| .|.+|.++|..|...+   +...++.+.+ ..+.....+.+.  .   .........+..+.+++||+|+++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D-~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit   76 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYD-IAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEEC-SSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEec-ccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence            7999999 5999999998875320   0023554444 433333333321  1   000000012345678999999997


Q ss_pred             c
Q 021356          186 I  186 (313)
Q Consensus       186 v  186 (313)
                      .
T Consensus        77 a   77 (145)
T d2cmda1          77 A   77 (145)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.20  E-value=0.0052  Score=49.51  Aligned_cols=93  Identities=13%  Similarity=0.003  Sum_probs=55.0

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhc-hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA  189 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~  189 (313)
                      ++|||||. |..|.-+.+.|.+. +.    ..++.....+...-  +.......+- .......+...++|++++++|..
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP----~~~l~~~~s~~~~G--k~i~~~~~~~-~~~~~~~~~~~~~d~vf~a~p~~   75 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAESAG--QRMGFAESSL-RVGDVDSFDFSSVGLAFFAAAAE   75 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTTTT--CEEEETTEEE-ECEEGGGCCGGGCSEEEECSCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCC----ceEEEEEeecccCC--cceeeccccc-hhccchhhhhccceEEEecCCcc
Confidence            78999995 99999999999643 10    22443222221100  0000111100 00112235578999999999988


Q ss_pred             hHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          190 AQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       190 a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      ...++..+..   +.|..|+|.++.
T Consensus        76 ~s~~~~~~~~---~~g~~VID~Ss~   97 (144)
T d2hjsa1          76 VSRAHAERAR---AAGCSVIDLSGA   97 (144)
T ss_dssp             HHHHHHHHHH---HTTCEEEETTCT
T ss_pred             hhhhhccccc---cCCceEEeechh
Confidence            7777777654   368899998875

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.96  E-value=0.061  Score=44.43  Aligned_cols=74  Identities=22%  Similarity=0.095  Sum_probs=40.6

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCccc--HHHHHH--CC-c--eecCCCcCCHHhhhccCCE
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARA--AG-F--TEENGTLGDIYETISGSDL  181 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s--~~~A~~--~G-~--~~~~~~~~~~~e~i~~ADv  181 (313)
                      .||.|+|. |.+|.+++..|... .=+|...  .+.+.+......  ...+.+  .. +  ...-....+..+.++++|+
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            68999996 99999999998764 0001111  222222221111  111211  11 0  0000114578899999999


Q ss_pred             EEEcc
Q 021356          182 VLLLI  186 (313)
Q Consensus       182 IiLav  186 (313)
                      ||+.-
T Consensus       104 Vvi~a  108 (175)
T d7mdha1         104 ALLIG  108 (175)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            99976

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.88  E-value=0.023  Score=45.48  Aligned_cols=47  Identities=19%  Similarity=0.240  Sum_probs=36.3

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .+|.|+|. |.+|...++.++..      |...++..+.+++..+.+++.|.
T Consensus        27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~~~~~~~~~~~Ga   74 (170)
T d1jvba2          27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVREEAVEAAKRAGA   74 (170)
T ss_dssp             TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESSHHHHHHHHHHTC
T ss_pred             CC-CEEEEEeccccceeeeeeccccc------ccccccccccchhhHHHHHHcCC
Confidence            56 89999995 99999999999988      86444555555666677777764

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.87  E-value=0.029  Score=46.03  Aligned_cols=96  Identities=10%  Similarity=0.199  Sum_probs=58.2

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEE-EecCC----cccHHHHHH--CCceecC-CCcCCHHhhhccCCE
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG----SRSFAEARA--AGFTEEN-GTLGDIYETISGSDL  181 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Viv-g~r~~----~~s~~~A~~--~G~~~~~-~~~~~~~e~i~~ADv  181 (313)
                      |++|+||| .|..|+-+.+.|.+.     +.+++.. ..+..    .+.......  .+..+.. ....+.++...+.|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~H-----P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   75 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRH-----PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV   75 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhC-----CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence            68999999 899999999998774     1444432 22211    122211100  1111000 001234455678999


Q ss_pred             EEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +++++|.....++.....+   .|..++|.++-
T Consensus        76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSad  105 (179)
T d2g17a1          76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSGA  105 (179)
T ss_dssp             EEECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             eeccccchhHHHHhhhhhh---cCceeeccccc
Confidence            9999999887777766544   57889988764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.019  Score=44.29  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=28.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .||||||.|.+|.-++...++.      |+++++.+..
T Consensus        12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~   43 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY   43 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred             CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence            7899999999999999999999      9998766543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.74  E-value=0.015  Score=46.85  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             CEEEEEcc-cchHHHHHHHHHhchhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP  187 (313)
                      -+|||||. |..|+-+.+.|.+.      .+   ++.....+  ++........... .......++...+.|++++++|
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~s~--~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASA--RSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEECG--GGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEeccc--ccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence            68999995 99999999988665      43   22222211  1110000000000 0001234456789999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .....++..+..   ++|..|+|.++.
T Consensus        73 ~~~s~~~~~~~~---~~~~~VIDlSsd   96 (154)
T d2gz1a1          73 SSTSAKYAPYAV---KAGVVVVDNTSY   96 (154)
T ss_dssp             HHHHHHHHHHHH---HTTCEEEECSST
T ss_pred             ccchhhHHhhhc---cccceehhcChh
Confidence            887777666544   368899998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.52  E-value=0.031  Score=47.84  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=32.0

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |++|++..|+..
T Consensus         3 l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~   40 (241)
T d2a4ka1           3 LSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREER   40 (241)
T ss_dssp             TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence            789 999999966 5999999999999      999888777643

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.46  E-value=0.21  Score=40.10  Aligned_cols=69  Identities=17%  Similarity=0.179  Sum_probs=47.3

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHH-----CCceecCCCcCCHHhhhc
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARA-----AGFTEENGTLGDIYETIS  177 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~-----~G~~~~~~~~~~~~e~i~  177 (313)
                      |+| ++|++||-| ++..|++..+..+      |+++.+.....    ++..+.+.+     .+...   ...+.+++++
T Consensus         2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~ea~~   71 (163)
T d1pvva2           2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE---LLHDPVKAVK   71 (163)
T ss_dssp             CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE---EESCHHHHTT
T ss_pred             cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceEE---EecCHHHHhh
Confidence            689 999999965 6889999999998      99876664431    122222222     12221   2458899999


Q ss_pred             cCCEEEEcc
Q 021356          178 GSDLVLLLI  186 (313)
Q Consensus       178 ~ADvIiLav  186 (313)
                      ++|+|..-.
T Consensus        72 ~adviy~~~   80 (163)
T d1pvva2          72 DADVIYTDV   80 (163)
T ss_dssp             TCSEEEECC
T ss_pred             hccEEeecc
Confidence            999988753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.26  E-value=0.025  Score=49.08  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=32.3

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +|+| |++-|.| .+-||.++|+.|.+.      |.+|++..|+.
T Consensus         3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNE   40 (258)
T ss_dssp             CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            5899 9999999 567999999999999      99988777653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.13  E-value=0.041  Score=47.71  Aligned_cols=38  Identities=13%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.+
T Consensus         2 dL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDE   40 (254)
T ss_dssp             CCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred             CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence            7899 999999966 6999999999999      999887776543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.00  E-value=0.066  Score=46.46  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      .+|+| ++|.|=|+|++|...|+.|.+.      |.+|+...+
T Consensus        27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD   62 (242)
T d1v9la1          27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD   62 (242)
T ss_dssp             SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence            47899 9999999999999999999999      998754444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.85  E-value=0.11  Score=44.85  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             cccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          104 LPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       104 ~~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      |...|+| |++-|.| .|-||.++|+.|.+.      |.+|++..|+..
T Consensus        19 ~~~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~   60 (294)
T d1w6ua_          19 PPNSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMD   60 (294)
T ss_dssp             CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred             CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHH
Confidence            4569999 9999999 678999999999999      999888777643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.035  Score=40.51  Aligned_cols=32  Identities=25%  Similarity=0.130  Sum_probs=28.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      ||+|||||.|.+|.=++...+..      |+++++...
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp   32 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGL   32 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECT
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcC
Confidence            58999999999999999999999      998765553

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.73  E-value=0.044  Score=44.34  Aligned_cols=89  Identities=22%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hhhccCCEEEE
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLL  184 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~i~~ADvIiL  184 (313)
                      +| ++|.|.|. |.+|....+.++..      |.+|+...++ ++..+.+++.|...-- ...+..   ..-..+|+|+=
T Consensus        27 ~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~-~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d   97 (171)
T d1iz0a2          27 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLE   97 (171)
T ss_dssp             TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEE
T ss_pred             CC-CEEEEEeccccchhhhhhhhccc------cccccccccc-ccccccccccccceee-ehhhhhhhhhcccccccccc
Confidence            67 99999995 99999999999999      9987666654 4456778888864200 011111   12245777776


Q ss_pred             cccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          185 LISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       185 avP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      ++.+     .+++..+.++++-.++..
T Consensus        98 ~~G~-----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          98 VRGK-----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             CSCT-----THHHHHTTEEEEEEEEEC
T ss_pred             ccch-----hHHHHHHHHhcCCcEEEE
Confidence            6552     234555666666555543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.64  E-value=0.19  Score=42.60  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             cCCCCEEEEEcc-c--chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          108 FNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       108 l~GikkIgIIG~-G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |+| |++-|.|. |  -||.++|+.|.+.      |.+|++..++. +..+...+            ..+....+.++..
T Consensus         3 L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~------------l~~~~~~~~~~~~   62 (274)
T d2pd4a1           3 LKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRP------------IAQELNSPYVYEL   62 (274)
T ss_dssp             TTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHH------------HHHHTTCCCEEEC
T ss_pred             CCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHH------------HHhhCCceeEeee
Confidence            789 99999996 5  3999999999999      99998887753 22222211            1222334455444


Q ss_pred             cccchhH-HHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~a~-~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      -+..... .++++++...+.+=.+++...|.
T Consensus        63 d~~~~~~~~~~~~~~~~~~g~id~lV~nag~   93 (274)
T d2pd4a1          63 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF   93 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             cccchhhHHHHHHHHHHHcCCCCeEEeeccc
Confidence            4444333 44667666665443445555543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.63  E-value=0.033  Score=45.17  Aligned_cols=33  Identities=30%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      -|||.|||.|.-|-+-|..|++.      |++|.+..+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence            09999999999999999999999      9998888754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.63  E-value=0.27  Score=38.82  Aligned_cols=79  Identities=18%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             EEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021356          113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ  191 (313)
Q Consensus       113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~  191 (313)
                      ||+|+| .|.||+.+++.+.+.     .++++..+.+.+...                  ......++|+||=-+.|...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~~------------------~~~~~~~~DvvIDFS~p~~~   57 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDPL------------------SLLTDGNTEVVIDFTHPDVV   57 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCCT------------------HHHHTTTCSEEEECCCTTTH
T ss_pred             CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCch------------------hhhccccCCEEEEcccHHHH
Confidence            799999 699999999987664     167776666543211                  01122579999999999998


Q ss_pred             HHHHHHHHhcCCCCcEEEEecCchh
Q 021356          192 ADNYEKIFSCMKPNSILGLSHGFLL  216 (313)
Q Consensus       192 ~~vi~ei~~~mk~gaiLid~~Gv~l  216 (313)
                      .+.++....+=.  .+|+=+.|+.-
T Consensus        58 ~~~~~~~~~~~~--~~ViGTTG~~~   80 (135)
T d1yl7a1          58 MGNLEFLIDNGI--HAVVGTTGFTA   80 (135)
T ss_dssp             HHHHHHHHHTTC--EEEECCCCCCH
T ss_pred             HHHHHHHHhcCC--CEEEeccccch
Confidence            888886554322  25555778753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.1  Score=41.77  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~AD  180 (313)
                      +| .+|.|+|. |.+|....+.++..      |.+|+...++ ++..+.+++.|..+- +....+..+.+      ...|
T Consensus        28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence            67 99999995 99999999999999      9987666654 445678888886320 01112333332      2367


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +|+-++..    +.+++..+.++++-.++..
T Consensus       100 ~v~d~~g~----~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         100 IIIEMLAN----VNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEESCHH----HHHHHHHHHEEEEEEEEEC
T ss_pred             EEeecccH----HHHHHHHhccCCCCEEEEE
Confidence            77766652    2455556667776655544

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.37  E-value=0.05  Score=43.61  Aligned_cols=69  Identities=9%  Similarity=0.027  Sum_probs=45.9

Q ss_pred             cCCCCEEEEEcccc---hHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       108 l~GikkIgIIG~G~---mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      |+| .||+|||=++   +..|++..+...      |+++++...+..  .......+.|...  ....+++++++++|+|
T Consensus         1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~d~~eai~~aDvv   71 (153)
T d1pg5a2           1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPV--KEVENPFEVINEVDVL   71 (153)
T ss_dssp             STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCE--EEESCGGGTGGGCSEE
T ss_pred             CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeE--EEEeCHHHHhhcCCeE
Confidence            578 9999999653   899999999998      987554433211  1122233333221  1145889999999998


Q ss_pred             EEc
Q 021356          183 LLL  185 (313)
Q Consensus       183 iLa  185 (313)
                      ...
T Consensus        72 y~~   74 (153)
T d1pg5a2          72 YVT   74 (153)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.23  E-value=0.051  Score=42.31  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA  190 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a  190 (313)
                      .++.|+|+|++|.++++.++..     .+++++.+.|.++.... ..-.|+..-  ....+++++ +..++.++++|...
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G-~~I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~   75 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVG-RPVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA   75 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTT-CEETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred             ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcC-CEECCEEEe--cHHHHHHHHhhcccEEEEeCCHHH
Confidence            3789999999999999877543     27887777776543221 111244321  122444433 45788899999888


Q ss_pred             HHHHHHHHHh
Q 021356          191 QADNYEKIFS  200 (313)
Q Consensus       191 ~~~vi~ei~~  200 (313)
                      ..++++.+.+
T Consensus        76 ~~~I~d~l~~   85 (126)
T d2dt5a2          76 AQKAADLLVA   85 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7778776554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.16  Score=43.49  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=54.3

Q ss_pred             cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      +.|.| |++-|.|.+. ||.++|+.|.+.      |.+|++..++.++..+.+.+            ..+  ...++..+
T Consensus         3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~------------~~~--~~~~~~~~   61 (244)
T d1yb1a_           3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAK------------CKG--LGAKVHTF   61 (244)
T ss_dssp             CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------HHH--TTCCEEEE
T ss_pred             CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHh--cCCcEEEE
Confidence            57999 9999999775 999999999999      99988877653322222211            111  12334444


Q ss_pred             cccch---hHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          185 LISDA---AQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       185 avP~~---a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .+-.+   .+.++++++.+.+.+=.+|+..+|.
T Consensus        62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~   94 (244)
T d1yb1a_          62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCCceeEeeccc
Confidence            43322   2334667666666554566666654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.12  E-value=0.14  Score=44.79  Aligned_cols=73  Identities=22%  Similarity=0.257  Sum_probs=49.3

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-HH-CCceecCCCcCC----HHhhhccCCEEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RA-AGFTEENGTLGD----IYETISGSDLVLL  184 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~-~G~~~~~~~~~~----~~e~i~~ADvIiL  184 (313)
                      |+|.|+| .|.+|.++++.|.+.      |++|++..|+........ .. .|+..-.+...+    ++.++..+|.+++
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~   77 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI   77 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence            8999999 699999999999999      999888777543322222 12 243211112222    3457889999999


Q ss_pred             cccchh
Q 021356          185 LISDAA  190 (313)
Q Consensus       185 avP~~a  190 (313)
                      ..+...
T Consensus        78 ~~~~~~   83 (350)
T d1xgka_          78 NTTSQA   83 (350)
T ss_dssp             CCCSTT
T ss_pred             eccccc
Confidence            887654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.10  E-value=0.11  Score=44.29  Aligned_cols=36  Identities=8%  Similarity=0.039  Sum_probs=31.1

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.
T Consensus         3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~   39 (242)
T d1ulsa_           3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEE   39 (242)
T ss_dssp             TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 999999965 5999999999999      99988777654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.03  E-value=0.069  Score=42.55  Aligned_cols=72  Identities=18%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             cCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021356          108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       108 l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      |+| .+|+|||=   ++...|++..+...      |+++.+...++    +.....+.+.+...  ....+++++++++|
T Consensus         2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~av~~aD   72 (157)
T d1ml4a2           2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKV--VETTTLEDVIGKLD   72 (157)
T ss_dssp             SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCE--EEESCTHHHHTTCS
T ss_pred             cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccc--eeecCHHHhhccCc
Confidence            678 99999997   67899999999998      99877665432    22233444444321  11458899999999


Q ss_pred             EEEEcccc
Q 021356          181 LVLLLISD  188 (313)
Q Consensus       181 vIiLavP~  188 (313)
                      +|....--
T Consensus        73 vvy~~~~~   80 (157)
T d1ml4a2          73 VLYVTRIQ   80 (157)
T ss_dssp             EEEECCCC
T ss_pred             EEEeeccc
Confidence            98876543

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.1  Score=42.11  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=46.1

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhhhcc
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETISG  178 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~~~~~~~e~i~~  178 (313)
                      |+| +||++||-| ++-.|++..+...      |+++.+......    ...+    .+.+.|....  ...++++++++
T Consensus         2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~~   72 (170)
T d1otha2           2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAHG   72 (170)
T ss_dssp             CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHTT
T ss_pred             CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHhh
Confidence            689 999999976 4556666666666      888766654322    1112    2223332110  14689999999


Q ss_pred             CCEEEEcccc
Q 021356          179 SDLVLLLISD  188 (313)
Q Consensus       179 ADvIiLavP~  188 (313)
                      +|+|..-+--
T Consensus        73 advi~~~~~~   82 (170)
T d1otha2          73 GNVLITDTWI   82 (170)
T ss_dssp             CSEEEECCSS
T ss_pred             hhheeeecee
Confidence            9999987653

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.95  E-value=0.12  Score=42.64  Aligned_cols=71  Identities=15%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHH----HHCCceecCCCcCCHHhhh
Q 021356          107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETI  176 (313)
Q Consensus       107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G~~~~~~~~~~~~e~i  176 (313)
                      -|+| .||++||=|  ++..|++..+..+      |+++.+....+    +...+.+    .+.|....  ...++++++
T Consensus         2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~eai   72 (185)
T d1dxha2           2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV   72 (185)
T ss_dssp             CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred             CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEE--EEeChhhcc
Confidence            4789 999999954  8999999999999      99987765432    2222222    23343211  145899999


Q ss_pred             ccCCEEEEcc
Q 021356          177 SGSDLVLLLI  186 (313)
Q Consensus       177 ~~ADvIiLav  186 (313)
                      +++|+|..-+
T Consensus        73 ~~aDvVyt~~   82 (185)
T d1dxha2          73 KGVDFVHTDV   82 (185)
T ss_dssp             TTCSEEEECC
T ss_pred             ccccEEEeeh
Confidence            9999988755

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.93  E-value=0.093  Score=45.03  Aligned_cols=87  Identities=14%  Similarity=0.066  Sum_probs=53.0

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      -|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++.++..+.+.+.+-.          -..-.+|+    
T Consensus         3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~Dv----   61 (244)
T d1nffa_           3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADA----------ARYVHLDV----   61 (244)
T ss_dssp             TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGG----------EEEEECCT----
T ss_pred             ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCc----------ceEEEeec----
Confidence            4789 999999964 6999999999999      999887776543322222222100          00012232    


Q ss_pred             ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 ISDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +-+....++++++.+.+.+=.+|+..+|+
T Consensus        62 ~~~~~v~~~~~~~~~~~g~idilinnAG~   90 (244)
T d1nffa_          62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI   90 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence            22334455777776665444567776665

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=92.87  E-value=0.056  Score=44.04  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ++|.|||.|..|-+.|..|.+.      |++|.+..+.
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~   38 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD   38 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred             CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence            7899999999999999999999      9999888764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.78  E-value=0.065  Score=46.26  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=31.2

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+
T Consensus         5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~   41 (259)
T d2ae2a_           5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRN   41 (259)
T ss_dssp             CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence            5789 999999966 5999999999999      9998777764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.73  E-value=0.13  Score=40.97  Aligned_cols=92  Identities=13%  Similarity=0.077  Sum_probs=62.5

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhh------ccCC
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i------~~AD  180 (313)
                      +| .+|.|+| .|.+|...++.++..      |.++++..+. ++..+.+++.|...- +....+..+.+      ...|
T Consensus        25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~-~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CC-CEEEEECCCCCcccccchhhccc------cccceeeecc-cccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence            57 8999988 599999999999999      9988777765 344677777774320 11112343433      3579


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      +|+-++...    .+++....++++..++..+
T Consensus        97 ~v~d~~g~~----~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          97 VVLNSLAGE----AIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EEEECCCTH----HHHHHHHTEEEEEEEEECS
T ss_pred             EEEecccch----HHHHHHHHhcCCCEEEEEc
Confidence            999888743    4455556777777766554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.71  E-value=0.083  Score=45.57  Aligned_cols=36  Identities=11%  Similarity=0.026  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++.
T Consensus         4 L~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~   40 (268)
T d2bgka1           4 LQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIAD   40 (268)
T ss_dssp             TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 999999955 6999999999999      99988777653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.70  E-value=0.043  Score=43.71  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=29.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG  150 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~  150 (313)
                      +||+|||.|..|-+.|..|++.      |+ +|.+..+.+
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~~   38 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQE   38 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESSS
T ss_pred             CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEecC
Confidence            8999999999999999999999      98 487777653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.16  Score=43.63  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             ccccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          105 PDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +.-|+| |++-|.|... ||.++|+.|.+.      |.+|++..|+.
T Consensus         9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~   48 (269)
T d1xu9a_           9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSK   48 (269)
T ss_dssp             GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            456999 9999999765 999999999999      99988877764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.66  E-value=0.23  Score=42.08  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             cccCCCCEEEEEcccc---hHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~---mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .+|+| |++-|.|.+.   ||.++|+.|.+.      |.+|++..+.
T Consensus         4 ~~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~   43 (256)
T d1ulua_           4 VDLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQA   43 (256)
T ss_dssp             ECCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESS
T ss_pred             cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence            47999 9999999753   999999999999      9998777665

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.64  E-value=0.18  Score=41.41  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=54.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEe-cCC-cccHHHHHHCCceecC-CCcCCHHhhhccCCEEEEccc
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKG-SRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLLLIS  187 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~-r~~-~~s~~~A~~~G~~~~~-~~~~~~~e~i~~ADvIiLavP  187 (313)
                      .|||||| .|..|+-+.+.|.+.     +.+++.... ++. .+........-....+ ......++..+++|+|++++|
T Consensus         6 ikVaIlGATGyvG~elirLL~~H-----P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp   80 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANH-----PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP   80 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred             cEEEEECcccHHHHHHHHHHHhC-----CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence            5799999 899999999999774     234543332 221 1222221111000000 001233456789999999999


Q ss_pred             chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          188 DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .....++...+   .+.+.++.+.+++
T Consensus        81 ~~~s~~~~~~l---~~~~~~v~~~~~~  104 (183)
T d2cvoa1          81 HGTTQEIIKGL---PQELKIVDLSADF  104 (183)
T ss_dssp             SSHHHHHHHTS---CSSCEEEECSSTT
T ss_pred             cchHHHHHHHH---HhcCcccccchhh
Confidence            98776666532   2345555566665

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.52  E-value=0.11  Score=41.39  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEE-EEEecCCcccHHHHHHCC--ceecCCCcC---CHHhhhccCCEEE
Q 021356          111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAG--FTEENGTLG---DIYETISGSDLVL  183 (313)
Q Consensus       111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~V-ivg~r~~~~s~~~A~~~G--~~~~~~~~~---~~~e~i~~ADvIi  183 (313)
                      |++|.|.| .|.+|..+++.|.+.      |+++ ++...+++.... ....+  +..  ....   +..++++++|.|+
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~------g~~v~v~~~~R~~~~~~-~~~~~~~~~~--~d~~~~~~~~~~~~~~d~vi   73 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEG------SDKFVAKGLVRSAQGKE-KIGGEADVFI--GDITDADSINPAFQGIDALV   73 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHT------TTTCEEEEEESCHHHHH-HTTCCTTEEE--CCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHC------CCcEEEEEEcCCHHHHH-hccCCcEEEE--eeeccccccccccccceeeE
Confidence            68999999 799999999999988      8643 233333322221 11122  221  1122   3346788999998


Q ss_pred             Ecc
Q 021356          184 LLI  186 (313)
Q Consensus       184 Lav  186 (313)
                      .+.
T Consensus        74 ~~a   76 (252)
T d2q46a1          74 ILT   76 (252)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.082  Score=49.49  Aligned_cols=85  Identities=13%  Similarity=0.069  Sum_probs=52.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC------------------Cc-ccHHHH---HHC--C-
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------GS-RSFAEA---RAA--G-  161 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~------------------~~-~s~~~A---~~~--G-  161 (313)
                      |.. .||.|||+|-+|..++++|...      |+ ++.+.+..                  +. +....+   ++.  . 
T Consensus        35 l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v  107 (426)
T d1yovb1          35 LDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNC  107 (426)
T ss_dssp             HHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTC
T ss_pred             Hhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCC
Confidence            667 8999999999999999999888      76 34444221                  00 111111   111  1 


Q ss_pred             -ceecCCCc-CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021356          162 -FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF  199 (313)
Q Consensus       162 -~~~~~~~~-~~~~e~i~~ADvIiLavP~~a~~~vi~ei~  199 (313)
                       +....... ...++.+++.|+|+.++-....+..+++..
T Consensus       108 ~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c  147 (426)
T d1yovb1         108 NVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML  147 (426)
T ss_dssp             CCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred             ceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence             11111111 123568899999999998888777887554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.17  Score=44.57  Aligned_cols=95  Identities=15%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             cccccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021356          104 LPDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV  182 (313)
Q Consensus       104 ~~~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI  182 (313)
                      ++.-|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.++..+.+.+.  ..      .. ......+++
T Consensus         6 ~~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el--~~------~~-~~~~~~~~~   69 (297)
T d1yxma1           6 APGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADEL--QA------NL-PPTKQARVI   69 (297)
T ss_dssp             CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--HH------TS-CTTCCCCEE
T ss_pred             CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--Hh------hh-ccccCceEE
Confidence            3467999 999999965 6999999999999      999888776543322222221  10      00 011245666


Q ss_pred             EEccc---chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          183 LLLIS---DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       183 iLavP---~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      .+.+=   +..+.++++++.+.+.+=.+|+..+|.
T Consensus        70 ~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          70 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EEeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence            66553   334455777776666554567766664

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.29  E-value=0.19  Score=43.35  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      ++|+| |++-|.|. +-||.++|+.|.+.      |.+|++..|+.+
T Consensus         3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCH
T ss_pred             CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcH
Confidence            58999 99999994 57999999999999      999988887654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.23  E-value=0.29  Score=41.69  Aligned_cols=88  Identities=17%  Similarity=0.117  Sum_probs=54.6

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++..+..+.+.+.            .+.. ..+++.+.
T Consensus         6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~------------~~~~-g~~~~~~~   65 (260)
T d1h5qa_           6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKV------------GKEF-GVKTKAYQ   65 (260)
T ss_dssp             CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHH------------HHHH-TCCEEEEE
T ss_pred             cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HHHh-CCceEEEE
Confidence            7899 999999966 5999999999999      999888877654433322211            0000 23344443


Q ss_pred             c---cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 I---SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 v---P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +   .+....++++++.+.+.+=.+|+..+|+
T Consensus        66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~   97 (260)
T d1h5qa_          66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV   97 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEecccccc
Confidence            3   3334445777776665443356666654

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.23  E-value=0.15  Score=40.70  Aligned_cols=70  Identities=11%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             cCCCCEEEEEcc--cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccH----HHHHHCC-ceecCCCcCCHHhhh
Q 021356          108 FNGINQIGVIGW--GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAG-FTEENGTLGDIYETI  176 (313)
Q Consensus       108 l~GikkIgIIG~--G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G-~~~~~~~~~~~~e~i  176 (313)
                      |+| +||++||=  .++-.|++..+..+      |+++.+.-.++    ....    +.+.+.+ -+.   ...++++++
T Consensus         1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~---~~~d~~~ai   70 (161)
T d1vlva2           1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS---FTSNLEEAL   70 (161)
T ss_dssp             STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE---EESCHHHHH
T ss_pred             CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCceE---EEecHHHhh
Confidence            689 99999995  47999999999999      99876654332    1111    1223333 221   145899999


Q ss_pred             ccCCEEEEccc
Q 021356          177 SGSDLVLLLIS  187 (313)
Q Consensus       177 ~~ADvIiLavP  187 (313)
                      +++|+|..-.-
T Consensus        71 ~~aDviyt~~~   81 (161)
T d1vlva2          71 AGADVVYTDVW   81 (161)
T ss_dssp             TTCSEEEECCC
T ss_pred             hhhhheeccce
Confidence            99999998664

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.96  E-value=0.21  Score=43.00  Aligned_cols=78  Identities=14%  Similarity=0.093  Sum_probs=47.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHH-HhchhhhcCCcEEEEEecCCc-----------ccHHHHHHCCceec--CCCcCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGS-----------RSFAEARAAGFTEE--NGTLGD  171 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~L-r~~~~~~~~G~~Vivg~r~~~-----------~s~~~A~~~G~~~~--~~~~~~  171 (313)
                      .+++| ++|.|=|+|++|..+|+.| ++.      |..++...+.+.           ...+...+.|....  +....+
T Consensus        27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~   99 (234)
T d1b26a1          27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERIT   99 (234)
T ss_dssp             CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEEC
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeec
Confidence            57899 9999999999999999998 467      887654433211           11111222222110  011235


Q ss_pred             HHhhhc-cCCEEEEcccchh
Q 021356          172 IYETIS-GSDLVLLLISDAA  190 (313)
Q Consensus       172 ~~e~i~-~ADvIiLavP~~a  190 (313)
                      .++++. +||+++-|--...
T Consensus       100 ~~~~~~~~~DI~~PcA~~~~  119 (234)
T d1b26a1         100 NEELLELDVDILVPAALEGA  119 (234)
T ss_dssp             HHHHHTSCCSEEEECSCTTC
T ss_pred             cccccccccceeecchhccc
Confidence            556665 8999887755443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.43  Score=39.86  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             cCCCCEEEEEcccc---hHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~G~---mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|.+.   ||.++|+.|.+.      |.+|++..+++
T Consensus         3 L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND   41 (258)
T ss_dssp             TTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred             CCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence            789 9999999765   889999999999      99988877653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.82  E-value=0.093  Score=44.37  Aligned_cols=39  Identities=15%  Similarity=0.058  Sum_probs=33.0

Q ss_pred             cCCCCEEEEEcc-cc--hHHHHHHHHHhchhhhcCCcEEEEEecCCccc
Q 021356          108 FNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS  153 (313)
Q Consensus       108 l~GikkIgIIG~-G~--mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s  153 (313)
                      |+| |++-|.|. |.  ||.++|+.|.+.      |.+|++..++..+.
T Consensus         4 l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           4 LDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred             CCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence            789 99999996 65  999999999999      99988877765443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.74  E-value=0.062  Score=43.63  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=29.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      |+|+|||.|.-|-+.|..|.+.      |++|.+..+.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence            6799999999999999999999      9998888764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.73  E-value=0.086  Score=46.20  Aligned_cols=38  Identities=32%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +.||+|+|||.|.-|-+.|..|++.    +.+.+|++..+.+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~   39 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG   39 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence            3479999999999999999999776    1135888887764

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.65  E-value=0.074  Score=42.77  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             cCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021356          108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL  184 (313)
Q Consensus       108 l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL  184 (313)
                      |+| .+|++||=   +++..|++..+...      |+++.+...+.-.    ..+..+..    ..+++|+++++|+|..
T Consensus         1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~~~----~~~~~~~~----~~~~~ea~~~aDviy~   65 (151)
T d2at2a2           1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQ----DEENTFGT----YVSMDEAVESSDVVML   65 (151)
T ss_pred             CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCchhh----ccccceeE----EEechhccccCceeee
Confidence            578 99999995   57999999999999      9987655433211    11122221    4588999999999876


Q ss_pred             ccc
Q 021356          185 LIS  187 (313)
Q Consensus       185 avP  187 (313)
                      ..-
T Consensus        66 ~r~   68 (151)
T d2at2a2          66 LRI   68 (151)
T ss_pred             eEE
Confidence            543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.58  E-value=0.37  Score=41.23  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++.
T Consensus         2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~   38 (258)
T d1iy8a_           2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSS   38 (258)
T ss_dssp             CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 999999965 6999999999999      99988777653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=91.58  E-value=0.082  Score=43.98  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ++|.|||.|.-|-+.|..|.+.      |++|.+..+.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence            8999999999999999999999      9998888754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.55  E-value=0.27  Score=42.13  Aligned_cols=42  Identities=21%  Similarity=0.195  Sum_probs=35.8

Q ss_pred             ccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc
Q 021356          105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS  153 (313)
Q Consensus       105 ~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s  153 (313)
                      ...|+| |++-|.| .+-||.++|+.|.+.      |.+|++..++.++.
T Consensus        13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~   55 (272)
T d1g0oa_          13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTES   55 (272)
T ss_dssp             GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHH
T ss_pred             CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHH
Confidence            467999 9999999 678999999999999      99988877765443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.14  Score=43.06  Aligned_cols=48  Identities=19%  Similarity=0.075  Sum_probs=38.6

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      +.|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++.++..+.+.+.
T Consensus         1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~l   49 (248)
T d2o23a1           1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKL   49 (248)
T ss_dssp             CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHH
T ss_pred             CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHh
Confidence            46899 999999955 5999999999999      999888887766555555543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.17  Score=41.67  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ..-.+ |+|+|||.|.-|-+-|..|.+.      |++|.+..+.+
T Consensus        39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAHS   76 (179)
T ss_dssp             SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred             CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEeccC
Confidence            45567 9999999999999999999999      99999888753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.33  E-value=0.099  Score=43.16  Aligned_cols=32  Identities=34%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +||.|||.|.-|-+.|..|++.      |++|.+.++.
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~   36 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS   36 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence            8999999999999999999999      9999888764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.14  Score=43.61  Aligned_cols=37  Identities=24%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.
T Consensus         1 dl~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSE   38 (243)
T ss_dssp             CCTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSH
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCH
Confidence            5899 999998954 6999999999999      99987776653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.26  E-value=0.14  Score=43.94  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=31.7

Q ss_pred             cCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       108 l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      |+| |++-|.|. +-||.++|+.|.+.      |.+|++..++.+
T Consensus         3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~   40 (256)
T d1k2wa_           3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLE   40 (256)
T ss_dssp             TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence            889 99999995 57999999999999      999887776533

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.16  E-value=0.12  Score=44.32  Aligned_cols=84  Identities=14%  Similarity=0.048  Sum_probs=51.0

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL  185 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa  185 (313)
                      -|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++.++..+.+.+.+                 ...+.+.
T Consensus         3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~-----------------~~~~~~~   58 (253)
T d1hxha_           3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAELG-----------------ERSMFVR   58 (253)
T ss_dssp             TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHC-----------------TTEEEEC
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhC-----------------CCeEEEE
Confidence            3789 999999954 6999999999999      9998777654322222222211                 1233333


Q ss_pred             c---cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          186 I---SDAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       186 v---P~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      +   .+....++++++.+.+.+=.+|+..+|+
T Consensus        59 ~Dv~~~~~~~~~~~~~~~~~g~iDilVnnAG~   90 (253)
T d1hxha_          59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGI   90 (253)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCeEEecccc
Confidence            2   2334445777666655444566666664

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.25  Score=40.31  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----ccc----HHHHHHCCceecCCCcCCHHhh
Q 021356          106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRS----FAEARAAGFTEENGTLGDIYET  175 (313)
Q Consensus       106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s----~~~A~~~G~~~~~~~~~~~~e~  175 (313)
                      +.|.| .+|++||=|  ++..|++..+...      |+++.+.-.++    +..    .+.+...|...  ....+.+++
T Consensus         1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a   71 (183)
T d1duvg2           1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG   71 (183)
T ss_dssp             CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred             CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence            35788 999999965  7999999999999      99877665432    111    12334444331  124589999


Q ss_pred             hccCCEEEEccc
Q 021356          176 ISGSDLVLLLIS  187 (313)
Q Consensus       176 i~~ADvIiLavP  187 (313)
                      ++++|+|..-+=
T Consensus        72 ~~~aDvvyt~~w   83 (183)
T d1duvg2          72 VEGADFIYTDVW   83 (183)
T ss_dssp             HTTCSEEEECCS
T ss_pred             cccCCEEEEEeh
Confidence            999999987553

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.08  E-value=0.12  Score=39.73  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=27.6

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCC--cEEEEEec
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLR  148 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G--~~Vivg~r  148 (313)
                      +| |+|.|||.|..|-.+|..|++.      +  .+|.+..+
T Consensus         1 ~g-krivIvGgG~~G~e~A~~l~~~------~~~~~Vtlie~   35 (186)
T d1fcda1           1 AG-RKVVVVGGGTGGATAAKYIKLA------DPSIEVTLIEP   35 (186)
T ss_dssp             CC-CEEEEECCSHHHHHHHHHHHHH------CTTSEEEEECS
T ss_pred             CC-CcEEEECccHHHHHHHHHHHHc------CCCCcEEEEEC
Confidence            48 9999999999999999999997      5  46665543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.02  E-value=0.16  Score=38.15  Aligned_cols=37  Identities=14%  Similarity=0.073  Sum_probs=32.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ...++ ++|.|||.|.+|--+|..|++.      |.+|.+..+.
T Consensus        18 ~~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~   54 (121)
T d1mo9a2          18 DYEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT   54 (121)
T ss_dssp             CSCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             hhCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence            44568 9999999999999999999999      9888777664

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.97  E-value=0.42  Score=40.66  Aligned_cols=88  Identities=16%  Similarity=0.091  Sum_probs=51.8

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI  186 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav  186 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..+++.+..+...+           .+.+ -...+++.+.+
T Consensus         2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~-----------~~~~-~~g~~~~~~~~   62 (260)
T d1x1ta1           2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRA-----------GLAA-QHGVKVLYDGA   62 (260)
T ss_dssp             CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHH-----------HHHH-HHTSCEEEECC
T ss_pred             CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHH-----------HHHH-hcCCcEEEEEC
Confidence            688 888888865 5999999999999      99988887765433322211           0001 01234444443


Q ss_pred             c---chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021356          187 S---DAAQADNYEKIFSCMKPNSILGLSHGF  214 (313)
Q Consensus       187 P---~~a~~~vi~ei~~~mk~gaiLid~~Gv  214 (313)
                      -   +..+.++++++.+.+.+=.+|+..+|+
T Consensus        63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence            2   233345666665554333356666654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.32  Score=41.55  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=31.6

Q ss_pred             ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      -|+| |++-|.|. +-||.++|+.|.+.      |.+|++..++.
T Consensus         3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~   40 (250)
T d1ydea1           3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDE   40 (250)
T ss_dssp             TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            3789 99999995 68999999999999      99988776653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.85  E-value=0.37  Score=41.01  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=31.4

Q ss_pred             cCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.| .+-||.++|+.|.+.      |.+|++..++.
T Consensus         3 l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~   39 (248)
T d2d1ya1           3 FAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRP   39 (248)
T ss_dssp             TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESST
T ss_pred             cCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 9999999 558999999999999      99988777654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.79  E-value=0.38  Score=40.99  Aligned_cols=38  Identities=26%  Similarity=0.210  Sum_probs=32.5

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++.+
T Consensus         2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLE   40 (251)
T ss_dssp             CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence            5899 999999965 6999999999999      999888776543

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.73  E-value=0.28  Score=42.30  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=29.3

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r  148 (313)
                      ..|+| ++|+|-|+|++|..+|+.|. +.      |..|+...+
T Consensus        28 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~vsD   64 (239)
T d1gtma1          28 DTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSD   64 (239)
T ss_dssp             SCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEEC
T ss_pred             CCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceeeccc
Confidence            56999 99999999999999999885 56      776654433

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.63  E-value=0.33  Score=41.21  Aligned_cols=38  Identities=11%  Similarity=0.047  Sum_probs=32.3

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      -|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..+...
T Consensus         2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPA   40 (247)
T ss_dssp             TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCC
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCch
Confidence            3789 999999965 6999999999999      999888877644

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.49  Score=40.33  Aligned_cols=38  Identities=21%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             ccccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +..|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|.
T Consensus         5 M~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~   43 (257)
T d1xg5a_           5 MERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCART   43 (257)
T ss_dssp             CGGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred             CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence            567999 999999954 8999999999999      9998777654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.54  E-value=0.55  Score=39.99  Aligned_cols=39  Identities=10%  Similarity=0.062  Sum_probs=32.8

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcc
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR  152 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~  152 (313)
                      +|+| |++-|.|.. -||.++|+.|.+.      |.+|++..|+.++
T Consensus         2 ~l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~   41 (254)
T d1sbya1           2 DLTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN   41 (254)
T ss_dssp             CCTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred             CCCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence            5899 999999966 5999999999999      9987777666543

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.43  E-value=0.23  Score=43.33  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEe
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL  147 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~  147 (313)
                      ..|+| +++.|=|+|++|...|+.|.+.      |.+|+...
T Consensus        32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvavs   66 (255)
T d1bgva1          32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTLS   66 (255)
T ss_dssp             CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEEE
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEe
Confidence            57899 9999999999999999999999      99866443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.11  E-value=0.19  Score=37.65  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=29.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +++.|||.|.+|--+|..+.+.      |.+|.+..+.+
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~~   55 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGAG   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred             CeEEEECCCccceeeeeeeccc------ccEEEEEEecc
Confidence            7999999999999999999999      99988777653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.19  Score=42.55  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=25.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      +-|+. .+|.|||+|-+|..+++.|...
T Consensus        26 ~kL~~-~~VliiG~GglGs~va~~La~~   52 (247)
T d1jw9b_          26 EALKD-SRVLIVGLGGLGCAASQYLASA   52 (247)
T ss_dssp             HHHHH-CEEEEECCSHHHHHHHHHHHHH
T ss_pred             HHHhC-CCEEEECCCHHHHHHHHHHHHc
Confidence            45788 9999999999999999999998

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=90.01  E-value=0.35  Score=41.77  Aligned_cols=94  Identities=15%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhh--ccCC
Q 021356          107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETI--SGSD  180 (313)
Q Consensus       107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~i--~~AD  180 (313)
                      ..+| ++|-=||+|.=.  ++..+.+.      |.+| ++.+.++...+.|+    ..|+..+ ....+..+.+  ...|
T Consensus       118 ~~~g-~~VLDiGcGsG~--l~i~aa~~------g~~V-~gvDis~~av~~A~~na~~n~~~~~-~~~~d~~~~~~~~~fD  186 (254)
T d2nxca1         118 LRPG-DKVLDLGTGSGV--LAIAAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRPR-FLEGSLEAALPFGPFD  186 (254)
T ss_dssp             CCTT-CEEEEETCTTSH--HHHHHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCCE-EEESCHHHHGGGCCEE
T ss_pred             cCcc-CEEEEcccchhH--HHHHHHhc------CCEE-EEEECChHHHHHHHHHHHHcCCcee-EEeccccccccccccc
Confidence            4678 999999999843  44455666      7775 68888877776555    3454321 1124555554  4689


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +|+.........++++++...||||-.++.+
T Consensus       187 ~V~ani~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         187 LLVANLYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence            9988777777778888999999999877643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.00  E-value=0.19  Score=42.71  Aligned_cols=47  Identities=26%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.++..+.+.+.
T Consensus         2 dl~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~   49 (242)
T d1cyda_           2 NFSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDLVSLAKEC   49 (242)
T ss_dssp             CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHS
T ss_pred             CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhc
Confidence            5899 999999965 6999999999999      999888777654433444443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.99  E-value=0.18  Score=43.30  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      -|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++
T Consensus         2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~   38 (260)
T d1zema1           2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMN   38 (260)
T ss_dssp             TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence            4899 999999965 5999999999999      9998777664

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.93  E-value=0.25  Score=42.24  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             ccccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          105 PDAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +-+|+| |++-|.|.+   -||.++|+.|.+.      |.+|++..+.
T Consensus         3 ~~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~   43 (297)
T d1d7oa_           3 PIDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV   43 (297)
T ss_dssp             CCCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred             CcCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence            357999 999999986   3999999999999      9998887765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.64  E-value=0.22  Score=37.77  Aligned_cols=33  Identities=24%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +++.|||.|.+|--+|..+++.      |.+|.+..+.+
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHHHHc------CCceEEEEeec
Confidence            7899999999999999999999      99988877653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.56  E-value=0.53  Score=39.13  Aligned_cols=72  Identities=13%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cH------HHHHHCCceecCCCcC---CHHhhhccCC
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF------AEARAAGFTEENGTLG---DIYETISGSD  180 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~------~~A~~~G~~~~~~~~~---~~~e~i~~AD  180 (313)
                      +||.|+| .|.+|..+++.|.+.      |++|++..|.... ..      ......++........   ...+.++++|
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~   77 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD   77 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence            6799999 699999999999999      9998877765321 11      1112233321111122   3446788999


Q ss_pred             EEEEcccch
Q 021356          181 LVLLLISDA  189 (313)
Q Consensus       181 vIiLavP~~  189 (313)
                      .++.+.+..
T Consensus        78 ~~~~~~~~~   86 (312)
T d1qyda_          78 VVISALAGG   86 (312)
T ss_dssp             EEEECCCCS
T ss_pred             hhhhhhhhc
Confidence            999877644

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.42  E-value=0.25  Score=37.73  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..|++.      |.+|.+..+.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~   62 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA------GVHVSLVETQ   62 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred             CeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence            9999999999999999999999      9998777654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.39  E-value=0.71  Score=42.71  Aligned_cols=96  Identities=16%  Similarity=0.098  Sum_probs=60.9

Q ss_pred             cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---------------Cc---eecCCC-
Q 021356          108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------------GF---TEENGT-  168 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---------------G~---~~~~~~-  168 (313)
                      =+| .++-=||+|. |..+...++..      |...++|.+..+...+.|++.               +.   ....+. 
T Consensus       215 kpg-d~fLDLGCG~-G~~vl~aA~~~------g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         215 KKG-DTFMDLGSGV-GNCVVQAALEC------GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             CTT-CEEEEESCTT-SHHHHHHHHHH------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             CCC-CEEEeCCCCC-cHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            456 8999999998 44444555555      654457888766555554431               10   000001 


Q ss_pred             -cCCHHhhhccCCEEEEcc--cchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          169 -LGDIYETISGSDLVLLLI--SDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       169 -~~~~~e~i~~ADvIiLav--P~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                       ....++.+..+|+|++..  .+....+.+.+++..||||..|+.+
T Consensus       287 ~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         287 DNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             TCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             hccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence             113456788999999853  3445567888999999999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.22  Score=37.54  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ++|.|||.|.+|-.+|..|++.      |.+|.+..+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcc------ccEEEEEeec
Confidence            7899999999999999999999      9998777664

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=89.17  E-value=0.22  Score=43.58  Aligned_cols=72  Identities=24%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----HHCC-c---eecC-CCcCCHHhhhc
Q 021356          109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----RAAG-F---TEEN-GTLGDIYETIS  177 (313)
Q Consensus       109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----~~~G-~---~~~~-~~~~~~~e~i~  177 (313)
                      +| |+|.|.| .|.+|..+++.|.+.      |++|+...|+.++.....     ...+ .   +..| ....++++++.
T Consensus        10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~   82 (342)
T d1y1pa1          10 EG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK   82 (342)
T ss_dssp             TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred             Cc-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence            37 9999999 899999999999999      999876666432211110     0011 0   1000 01234567899


Q ss_pred             cCCEEEEccc
Q 021356          178 GSDLVLLLIS  187 (313)
Q Consensus       178 ~ADvIiLavP  187 (313)
                      ++|.|+-+.-
T Consensus        83 ~~~~v~~~a~   92 (342)
T d1y1pa1          83 GAAGVAHIAS   92 (342)
T ss_dssp             TCSEEEECCC
T ss_pred             cchhhhhhcc
Confidence            9999886543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.12  E-value=0.23  Score=42.87  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             cCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|. +-||.++|+.|.+.      |.+|++..|+.
T Consensus         3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~   39 (276)
T d1bdba_           3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSA   39 (276)
T ss_dssp             TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 99999995 58999999999999      99988877653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.35  Score=41.08  Aligned_cols=37  Identities=24%  Similarity=0.063  Sum_probs=30.4

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS  151 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~  151 (313)
                      +.| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.+
T Consensus         1 i~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~   38 (254)
T d2gdza1           1 VNG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLE   38 (254)
T ss_dssp             CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence            368 898898965 5999999999999      999887776543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.99  E-value=0.19  Score=44.27  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+|.|||.|.-|-+.|..|.+.      |++|.+...++
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~~   35 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQRD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECCC
Confidence            8999999999999999999998      99998887664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.95  E-value=0.42  Score=40.60  Aligned_cols=42  Identities=21%  Similarity=0.207  Sum_probs=34.5

Q ss_pred             cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccH
Q 021356          106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF  154 (313)
Q Consensus       106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~  154 (313)
                      +-|.| |++-|.|.+ -||.++|+.|.+.      |++|++..+++++..
T Consensus         2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~   44 (259)
T d1ja9a_           2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAA   44 (259)
T ss_dssp             CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHH
T ss_pred             CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHH
Confidence            45899 999999955 5999999999999      999888777655433

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.87  E-value=0.29  Score=37.25  Aligned_cols=34  Identities=26%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ++ ++|.|||.|.+|--+|..|++.      |.+|.+..+.
T Consensus        29 ~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~   62 (123)
T d1nhpa2          29 EV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL   62 (123)
T ss_dssp             TC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred             CC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence            46 9999999999999999999999      9998777654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.78  E-value=0.24  Score=37.64  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=29.3

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ++|.|||.|.+|--+|..|.+.      |.+|.+..+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~   54 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG   54 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred             CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence            8999999999999999999999      9998877664

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.76  E-value=0.15  Score=43.08  Aligned_cols=32  Identities=28%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +|.|||.|.-|.++|..|++.      |++|.+..+..
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKA------GIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH------TCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC------CCCEEEEeCCC
Confidence            699999999999999999999      99988887653

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=88.71  E-value=0.65  Score=40.13  Aligned_cols=87  Identities=14%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             ccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021356          101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD  180 (313)
Q Consensus       101 f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~AD  180 (313)
                      |.+.....+| ++|++||+  + + ....+++.      +.++.+.+++..        .|...    ....++++++||
T Consensus       113 ~~~~~~~~~g-~kV~vIG~--~-P-~v~~l~~~------~~~~~VlE~~p~--------~gd~p----~~~~~~lLp~aD  169 (251)
T d2h1qa1         113 FIMSQNEVKG-KKVGVVGH--F-P-HLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILPECD  169 (251)
T ss_dssp             HHHTTTTTTT-SEEEEESC--C-T-THHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGCS
T ss_pred             hhhhccccCC-CEEEEEec--c-h-hHHHHHhc------CCcEEEEeCCCC--------CCCCC----chHHHHhhhcCC
Confidence            3334456678 99999986  4 3 55557777      788877776531        23322    235788999999


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                      +|++.-. +-+.+-++.++++.|+...++.+
T Consensus       170 ~viiTGs-TlvN~Tl~~LL~~~~~a~~vvl~  199 (251)
T d2h1qa1         170 YVYITCA-SVVDKTLPRLLELSRNARRITLV  199 (251)
T ss_dssp             EEEEETH-HHHHTCHHHHHHHTTTSSEEEEE
T ss_pred             EEEEEec-hhhcCCHHHHHHhCCcCCEEEEE
Confidence            9988632 12223556677766666555443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.64  E-value=0.25  Score=37.63  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=29.1

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..|.+.      |.+|.+..+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~   55 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ   55 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence            7999999999999999999999      9998777654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.40  E-value=0.2  Score=41.76  Aligned_cols=31  Identities=26%  Similarity=0.095  Sum_probs=28.0

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |.|||.|.+|.+.|..|.+.      |.+|++.++..
T Consensus         7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence            89999999999999999999      99988877653

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.24  Score=40.12  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .+|.|||.|.=|-+-|..|.+.      |++|.+....
T Consensus         6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~   37 (449)
T d2dw4a2           6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEAR   37 (449)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence            6799999999999999999999      9999888754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=88.07  E-value=0.2  Score=38.95  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=27.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~  149 (313)
                      .+|.|||.|.-|-+.|..|.+.      |+ +|.+..+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~   33 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence            3689999999999999999999      97 58777654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.92  E-value=0.23  Score=42.74  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.
T Consensus         3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~   39 (272)
T d1xkqa_           3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSS   39 (272)
T ss_dssp             TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 999999954 6999999999999      99988877653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=0.31  Score=37.15  Aligned_cols=32  Identities=16%  Similarity=0.102  Sum_probs=29.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..+++.      |.+|.+..+.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~   54 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRH   54 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeec
Confidence            7999999999999999999999      9998887765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.32  Score=41.24  Aligned_cols=47  Identities=21%  Similarity=0.195  Sum_probs=35.8

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA  160 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~  160 (313)
                      .|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.++..+.+.+.
T Consensus         4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~l~~~~~~~   51 (244)
T d1pr9a_           4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQADLDSLVREC   51 (244)
T ss_dssp             CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHS
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhc
Confidence            5899 999999954 7999999999999      999887776544333333333

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.74  E-value=0.041  Score=44.88  Aligned_cols=22  Identities=27%  Similarity=0.358  Sum_probs=21.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      |+|.|||.|.+|-+.|..|.+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~   22 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHER   22 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHC
Confidence            6899999999999999999988

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.64  E-value=0.43  Score=37.90  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             cCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcE-EEEEecC----CcccHHHHHHCCceecCCCcCCHHhhhccC
Q 021356          108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIV-VKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS  179 (313)
Q Consensus       108 l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~e~i~~A  179 (313)
                      |+| .+|++||=   +....|++..+...      |.. +.+.-..    .+...+.+.+.|...  ....+++++++++
T Consensus         2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~a~~~a   72 (160)
T d1ekxa2           2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAW--SLHSSIEEVMAEV   72 (160)
T ss_dssp             SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCE--EECSCSTTTGGGC
T ss_pred             CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhcccc--ccccCHHHHhCcC
Confidence            678 99999996   44899999999888      754 3343222    122234455555432  1245888999999


Q ss_pred             CEEEEcc
Q 021356          180 DLVLLLI  186 (313)
Q Consensus       180 DvIiLav  186 (313)
                      |+|....
T Consensus        73 Dvvy~~~   79 (160)
T d1ekxa2          73 DILYMTR   79 (160)
T ss_dssp             SEEEECC
T ss_pred             ceEEeec
Confidence            9987543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.74  Score=36.26  Aligned_cols=46  Identities=15%  Similarity=0.020  Sum_probs=34.2

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF  162 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~  162 (313)
                      +| .+|.|+|. |.+|....+.++..      |.+|++..++ ++..+.+++.|.
T Consensus        28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s-~~k~~~~~~lGa   74 (179)
T d1qora2          28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGA   74 (179)
T ss_dssp             TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTC
T ss_pred             CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccc-hHHHHHHHhcCC
Confidence            57 99999964 55999999999998      9987666555 344566666663

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.08  E-value=0.26  Score=37.63  Aligned_cols=31  Identities=23%  Similarity=0.100  Sum_probs=28.0

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      +++.|||.|.+|--+|..+++.      |.+|.+..+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~   51 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVR   51 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT------TCCEEEEES
T ss_pred             CeEEEECCCccHHHHHHHHhhc------CCeEEEEEe
Confidence            6899999999999999999999      998877654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.07  E-value=0.69  Score=39.42  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+
T Consensus         5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~   41 (259)
T d1xq1a_           5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARN   41 (259)
T ss_dssp             CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence            5789 999999965 5999999999999      9998777665

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.04  E-value=0.34  Score=43.25  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR  148 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r  148 (313)
                      ..|+| ++|.|=|+|++|...|+.|.+.      |.+|+...+
T Consensus        32 ~~L~g-ktvaIqGfGnVG~~~A~~L~e~------Gakvv~vsD   67 (293)
T d1hwxa1          32 PGFGD-KTFAVQGFGNVGLHSMRYLHRF------GAKCVAVGE   67 (293)
T ss_dssp             SSSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEEE
T ss_pred             CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence            47999 9999999999999999999999      998654443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=86.74  E-value=0.39  Score=37.05  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .+ ++|.|||.|.+|--+|..|++.      |.+|.+..+.
T Consensus        34 ~~-k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~   67 (133)
T d1q1ra2          34 AD-NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA   67 (133)
T ss_dssp             TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             cC-CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence            35 9999999999999999999999      9998777654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.38  E-value=1.2  Score=39.35  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-----------C-------ceecCCCcC
Q 021356          109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G-------FTEENGTLG  170 (313)
Q Consensus       109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------G-------~~~~~~~~~  170 (313)
                      ++ .+|-=||+|.-...+ ..++..      +..-++|.+..+...+.|++.           |       ++.  +...
T Consensus       151 ~~-~~vlD~GcG~G~~~~-~~a~~~------~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~--gd~~  220 (328)
T d1nw3a_         151 DD-DLFVDLGSGVGQVVL-QVAAAT------NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER--GDFL  220 (328)
T ss_dssp             TT-CEEEEETCTTSHHHH-HHHHHC------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE--CCTT
T ss_pred             CC-CEEEEcCCCCCHHHH-HHHHHh------CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE--Cccc
Confidence            36 889999999854443 334455      554467888766555444321           1       221  1122


Q ss_pred             --CHHhhhccCCEEEEccc--chhHHHHHHHHHhcCCCCcEEEEe
Q 021356          171 --DIYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSILGLS  211 (313)
Q Consensus       171 --~~~e~i~~ADvIiLavP--~~a~~~vi~ei~~~mk~gaiLid~  211 (313)
                        +..+.+.++|+|++..-  .....+.+.+++..||||..|+..
T Consensus       221 ~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         221 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             SHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence              23455678999997433  334456778899999999987643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=0.23  Score=42.48  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=30.9

Q ss_pred             ccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .|+| |++-|.|.+ -||.++|+.|.+.      |.+|++..++
T Consensus         8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~   44 (255)
T d1fmca_           8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDIN   44 (255)
T ss_dssp             CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESC
T ss_pred             CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECC
Confidence            4799 999999954 6999999999999      9998877764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.23  E-value=0.41  Score=39.08  Aligned_cols=32  Identities=25%  Similarity=0.182  Sum_probs=28.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~  149 (313)
                      .+|.|||.|.-|.++|..|++.      |+ +|.+..+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence            6899999999999999999999      96 77777764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.16  E-value=1.6  Score=34.53  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCCcCCHHhhh-----ccCC
Q 021356          109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETI-----SGSD  180 (313)
Q Consensus       109 ~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~~~~~~e~i-----~~AD  180 (313)
                      +| .+|-|.|. |.+|.+.++.++..      |.+|+...++ ++..+.+++.|...-  .......++++     ...|
T Consensus        29 ~G-~~VlV~ga~ggvG~~aiqlak~~------Ga~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          29 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             SS-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CC-CEEEEEeCCCchhHHHHHHHHcc------CCEEEEeCCC-HHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCc
Confidence            68 99999997 66999999999988      9987766554 345667777774310  11112223322     4589


Q ss_pred             EEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021356          181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG  213 (313)
Q Consensus       181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G  213 (313)
                      +|+=++..    +.+++..+.++++-.++..+.
T Consensus       101 ~v~D~vG~----~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         101 CYFDNVGG----EFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             EEEESSCH----HHHHHHGGGEEEEEEEEECCC
T ss_pred             eeEEecCc----hhhhhhhhhccCCCeEEeecc
Confidence            99988863    356777888888877776543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.15  E-value=0.42  Score=35.65  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=28.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..|++.      |.+|.+..+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~   53 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR   53 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence            8999999999999999999999      9998776554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.49  E-value=0.47  Score=35.84  Aligned_cols=32  Identities=31%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..|.+.      |.+|.+..+.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~   64 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG   64 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence            8999999999999999999999      9988776654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.42  E-value=0.4  Score=40.75  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             CEEEEE-ccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       112 kkIgII-G~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |||++| |.+ -||.++|+.|.+.      |.+|++..|+.
T Consensus         1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            567655 754 5999999999999      99988777653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.36  E-value=1.1  Score=37.65  Aligned_cols=36  Identities=17%  Similarity=0.070  Sum_probs=30.7

Q ss_pred             ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      -|+| |++-|.| .+-||.++|+.|.+.      |.+|++..++
T Consensus         3 ~l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~   39 (245)
T d2ag5a1           3 RLDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDIN   39 (245)
T ss_dssp             TTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred             CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence            3889 8887877 669999999999999      9998877765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.00  E-value=0.66  Score=37.41  Aligned_cols=91  Identities=21%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccHHHHHHCCceec-CCCcCCHHhhhcc-----CCEEE
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SDLVL  183 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~~-----ADvIi  183 (313)
                      .+|-|.| .|.+|....+.++..      |.+++++.. ++++..+.+.+.|...- +....+..+.+++     .|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~------Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLL------GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHT------TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHc------CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEE
Confidence            6788888 699999999999998      986666544 43444445556663210 1223355555544     88888


Q ss_pred             EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          184 LLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       184 LavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                      =++-    .+.++...+.++++-.++.++
T Consensus       106 D~vG----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         106 DNVG----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             ESSC----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             ecCC----chhHHHHhhhccccccEEEec
Confidence            7775    235677777788877665443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.90  E-value=0.25  Score=41.53  Aligned_cols=66  Identities=18%  Similarity=0.204  Sum_probs=43.5

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce--ecCCCcCCHH---hhhccCCE
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT--EENGTLGDIY---ETISGSDL  181 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~--~~~~~~~~~~---e~i~~ADv  181 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.    +...+.+..  .-| -....+   +-+.+-|+
T Consensus         2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~~----~~l~~~~~~~~~~D-v~~~~~~~~~~~g~iD~   69 (234)
T d1o5ia_           2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARNE----ELLKRSGHRYVVCD-LRKDLDLLFEKVKEVDI   69 (234)
T ss_dssp             CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH----HHHHHTCSEEEECC-TTTCHHHHHHHSCCCSE
T ss_pred             CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH----HHHHhcCCcEEEcc-hHHHHHHHHHHhCCCcE
Confidence            789 999999964 6999999999999      99987777653    233334321  101 011223   34457898


Q ss_pred             EEEc
Q 021356          182 VLLL  185 (313)
Q Consensus       182 IiLa  185 (313)
                      +|..
T Consensus        70 lVnn   73 (234)
T d1o5ia_          70 LVLN   73 (234)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.89  E-value=0.38  Score=36.56  Aligned_cols=32  Identities=22%  Similarity=0.071  Sum_probs=29.4

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..+.+.      |.+|.+..+.
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~------G~~Vtvi~~~   57 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRI------GSEVTVVEFA   57 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred             CeEEEEccchHHHHHHHHHHhc------CCeEEEEEEc
Confidence            8999999999999999999999      9998877664

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.85  E-value=1.1  Score=38.08  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             cCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.| .+-||.++|+.|.+.      |.+|++..|+.
T Consensus         3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~   39 (264)
T d1spxa_           3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHA   39 (264)
T ss_dssp             TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            788 8888888 468999999999999      99988777653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.77  E-value=0.39  Score=41.35  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|.+ -||.++|+.|.+.      |.+|++..|+.
T Consensus         2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~   38 (274)
T d1xhla_           2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNE   38 (274)
T ss_dssp             CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 999999965 6999999999999      99988777653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.36  E-value=0.59  Score=37.37  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=26.8

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      |||.|||.|..|-..|..|++.    +.+.+|++..+.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence            7899999999999999999987    124466666543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.05  E-value=0.6  Score=39.60  Aligned_cols=35  Identities=23%  Similarity=-0.017  Sum_probs=29.4

Q ss_pred             cCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       108 l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      |+| |++-|.|. +-||.++|+.|.+.      |.+|++..++
T Consensus         8 len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~   43 (251)
T d2c07a1           8 GEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRT   43 (251)
T ss_dssp             CSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESS
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECC
Confidence            578 88888895 47999999999998      9998777764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=83.82  E-value=1  Score=34.76  Aligned_cols=94  Identities=11%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC----ceec---------------C
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEE---------------N  166 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~---------------~  166 (313)
                      .--+| .+|-.||+|.=  ..+..|.+.      |++| +|.+.++...+.|++.-    ...+               .
T Consensus        17 ~~~~~-~rvLd~GCG~G--~~a~~la~~------G~~V-~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_          17 NVVPG-ARVLVPLCGKS--QDMSWLSGQ------GYHV-VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             CCCTT-CEEEETTTCCS--HHHHHHHHH------CCEE-EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             CCCCC-CEEEEecCcCC--HHHHHHHHc------CCce-EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            34478 99999999984  355566667      8875 68887777777776521    1000               0


Q ss_pred             CCcCCH-HhhhccCCEEEE-----cccchhHHHHHHHHHhcCCCCcEEE
Q 021356          167 GTLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       167 ~~~~~~-~e~i~~ADvIiL-----avP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      +...++ .+.....|+|+.     ++++.....++.++...||||-.++
T Consensus        87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~  135 (201)
T d1pjza_          87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL  135 (201)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred             ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence            001111 122334577654     4444445668889999999987654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.81  E-value=0.41  Score=41.41  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=29.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |..|.|||.|.-|-+.|..|.+.      |.+|.+...++
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECCC
Confidence            46789999999999999999998      99988887653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.59  E-value=0.98  Score=38.18  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             cCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      |+| |++-|.|. +-||.++|+.|.+.      |.+|++..++.
T Consensus         4 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~   40 (251)
T d1zk4a1           4 LDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHS   40 (251)
T ss_dssp             TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred             CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence            789 99999994 46999999999999      99988777653

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=1  Score=42.69  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEE
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG  146 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg  146 (313)
                      ...|.. .+|.|||+|.+|.-++++|...      |+ .+.+.
T Consensus        20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itiv   55 (529)
T d1yova1          20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTII   55 (529)
T ss_dssp             HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEE
T ss_pred             HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEE
Confidence            467778 9999999999999999999988      87 44444

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.51  E-value=0.47  Score=39.00  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=46.6

Q ss_pred             CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc--HH------HHHHCCceecCCCcC---CHHhhhccC
Q 021356          112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FA------EARAAGFTEENGTLG---DIYETISGS  179 (313)
Q Consensus       112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~------~A~~~G~~~~~~~~~---~~~e~i~~A  179 (313)
                      |||.|+| .|.+|..+++.|.+.      |++|++..|.....  ..      .....++....+...   ...+.++.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   77 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV   77 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence            7899999 599999999999999      99987777653321  11      111223221111122   234577889


Q ss_pred             CEEEEcccchhH
Q 021356          180 DLVLLLISDAAQ  191 (313)
Q Consensus       180 DvIiLavP~~a~  191 (313)
                      |.|+.+......
T Consensus        78 ~~vi~~~~~~~~   89 (307)
T d1qyca_          78 DVVISTVGSLQI   89 (307)
T ss_dssp             SEEEECCCGGGS
T ss_pred             eeeeeccccccc
Confidence            988877765443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.16  E-value=2.5  Score=35.80  Aligned_cols=91  Identities=18%  Similarity=0.181  Sum_probs=58.0

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecC-----Cc-----cc--HHHHHHCCceecCCCcCCH
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRK-----GS-----RS--FAEARAAGFTEENGTLGDI  172 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~-----~~-----~s--~~~A~~~G~~~~~~~~~~~  172 (313)
                      +.|+. .+|.|.|.|.-|-.+++.+++.      +.+ ++..+++     +.     ..  ...+.....   .....++
T Consensus        22 ~~l~d-~riv~~GAGsAg~gia~~l~~~------~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~---~~~~~~l   91 (222)
T d1vl6a1          22 KKIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDL   91 (222)
T ss_dssp             CCTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCH
T ss_pred             CChhh-cEEEEEChHHHHHHHHHHHHHh------cccceEeecceeEEEcCcccccccHHHHHHHhhhcc---hhhhcch
Confidence            45777 9999999999999999999987      774 3333332     10     01  111221111   1124578


Q ss_pred             HhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021356          173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG  209 (313)
Q Consensus       173 ~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi  209 (313)
                      .++++.+|+++...-.....+   +....|.+..+|.
T Consensus        92 ~~~l~g~~~~~g~~~~~~~~~---e~m~~~~~rPIIF  125 (222)
T d1vl6a1          92 ETALEGADFFIGVSRGNILKP---EWIKKMSRKPVIF  125 (222)
T ss_dssp             HHHHTTCSEEEECSCSSCSCH---HHHTTSCSSCEEE
T ss_pred             HhhccCcceeccccccccccH---HHHhhcCCCCEEE
Confidence            899999999888776544322   4455667777776

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.92  E-value=0.69  Score=35.37  Aligned_cols=32  Identities=16%  Similarity=0.054  Sum_probs=29.2

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      +++.|||.|.+|--+|..+++.      |.+|.+..+.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~------G~~Vtive~~   58 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTL------GSRLDVVEMM   58 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcC------CCEEEEEEee
Confidence            7999999999999999999999      9998877654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.73  E-value=3.4  Score=32.75  Aligned_cols=22  Identities=32%  Similarity=0.364  Sum_probs=19.5

Q ss_pred             CEEEEEcccchHHHHHHHHHhc
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      -+|+|+|+|++|+++++.|.+.
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~   26 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAM   26 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC
T ss_pred             EEEEEEeCCHHHHHHHHHHHHh
Confidence            4689999999999999998764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=82.65  E-value=3.2  Score=33.05  Aligned_cols=93  Identities=16%  Similarity=0.103  Sum_probs=55.3

Q ss_pred             CCCCEEEEE--cccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc---HHHHHHCCcee---cCC-CcCCHHhhh---
Q 021356          109 NGINQIGVI--GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTE---ENG-TLGDIYETI---  176 (313)
Q Consensus       109 ~GikkIgII--G~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~---~~~-~~~~~~e~i---  176 (313)
                      +| .++.|+  |.|.+|.+..+.++..      |.+|+...+.....   .+..++.|...   .+. ...+..+.+   
T Consensus        28 ~g-~~vli~~ga~g~vG~~aiqlAk~~------Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~  100 (189)
T d1gu7a2          28 PG-KDWFIQNGGTSAVGKYASQIGKLL------NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEW  100 (189)
T ss_dssp             TT-TCEEEESCTTSHHHHHHHHHHHHH------TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred             CC-CEEEEEeCCCchHHHHHHHHHhhc------CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHH
Confidence            57 888888  6789999999999999      99987776654332   23445666421   000 000111111   


Q ss_pred             -----ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021356          177 -----SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH  212 (313)
Q Consensus       177 -----~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~  212 (313)
                           ...|+|+=++-..    .+++.+..|+++-.++..+
T Consensus       101 ~~~~g~~vdvv~D~vg~~----~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         101 IKQSGGEAKLALNCVGGK----SSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHTCCEEEEEESSCHH----HHHHHHHTSCTTCEEEECC
T ss_pred             HhhccCCceEEEECCCcc----hhhhhhhhhcCCcEEEEEC
Confidence                 2367777766533    3445556777777666554

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.35  E-value=0.68  Score=37.65  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      .+|+|||.|.-|-+.|..|++.    +.|++|.+..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence            6899999999999999999765    226688777654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.23  E-value=1.1  Score=36.94  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      ..-.+ ++|.|||.|.-|-+.|..|++.      |++|.+....
T Consensus        45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~   81 (233)
T d1djqa3          45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA   81 (233)
T ss_dssp             CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred             cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence            33466 9999999999999999999999      9998888654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.60  E-value=0.82  Score=37.64  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             cCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccH-HHHHHCCceecC-CCcCCHHhhhccCCEE
Q 021356          108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF-AEARAAGFTEEN-GTLGDIYETISGSDLV  182 (313)
Q Consensus       108 l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~-~~A~~~G~~~~~-~~~~~~~e~i~~ADvI  182 (313)
                      +++ ++|-|.| .|.+|..+.+.|.+.      |.  +|++..|+..... .......+...| ....++.++++++|+|
T Consensus        12 m~~-k~IlItGaTG~iG~~l~~~Ll~~------g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~v   84 (232)
T d2bkaa1          12 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG   84 (232)
T ss_dssp             HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred             CCC-CEEEEECCCcHHHHHHHHHHHhC------CCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccc
Confidence            456 8999999 899999999999888      74  6777666532211 111111111100 0123456778999999


Q ss_pred             EEccc
Q 021356          183 LLLIS  187 (313)
Q Consensus       183 iLavP  187 (313)
                      +.+.-
T Consensus        85 i~~~~   89 (232)
T d2bkaa1          85 FCCLG   89 (232)
T ss_dssp             EECCC
T ss_pred             ccccc
Confidence            98763

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.46  E-value=0.95  Score=36.96  Aligned_cols=95  Identities=16%  Similarity=0.278  Sum_probs=56.2

Q ss_pred             cCCCCEEEEEcccchHHH--HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHh-hhccC
Q 021356          108 FNGINQIGVIGWGSQGPA--QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYE-TISGS  179 (313)
Q Consensus       108 l~GikkIgIIG~G~mG~A--lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~e-~i~~A  179 (313)
                      -+| .+|-=||+|.-..+  +++.+...      +.+ ++|.|.++...+.|++.    +.... .....+..+ -..+.
T Consensus        38 ~~~-~~vLDlGCGtG~~~~~l~~~~~~~------~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~  109 (225)
T d1im8a_          38 TAD-SNVYDLGCSRGAATLSARRNINQP------NVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNA  109 (225)
T ss_dssp             CTT-CEEEEESCTTCHHHHHHHHTCCCS------SCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSE
T ss_pred             CCC-CEEEEeccchhhHHHHHHHhhcCC------CCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccc
Confidence            357 89999999764333  33333333      666 46888877777777642    21100 000112211 12456


Q ss_pred             CEEEE-----cccchhHHHHHHHHHhcCCCCcEEEE
Q 021356          180 DLVLL-----LISDAAQADNYEKIFSCMKPNSILGL  210 (313)
Q Consensus       180 DvIiL-----avP~~a~~~vi~ei~~~mk~gaiLid  210 (313)
                      |+|+.     .+++.....+++++...||||-.++.
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence            77666     34556666899999999999987663

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.44  E-value=0.63  Score=35.92  Aligned_cols=31  Identities=16%  Similarity=-0.037  Sum_probs=27.8

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      +.|||.|.-|.+.|..|.+.      |.+|.+..+.+
T Consensus         8 viViGaG~~Gl~~A~~La~~------G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVD------GKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHC------CCCEEEEcCCC
Confidence            68999999999999999999      99998887753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.34  E-value=0.54  Score=34.73  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=25.3

Q ss_pred             ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021356          105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS  133 (313)
Q Consensus       105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~  133 (313)
                      ..+++| |+|.|||.|+=|.-+|..|...
T Consensus        27 ~~~f~g-K~VlVVG~g~Sa~dia~~l~~~   54 (107)
T d2gv8a2          27 PELFVG-ESVLVVGGASSANDLVRHLTPV   54 (107)
T ss_dssp             GGGGTT-CCEEEECSSHHHHHHHHHHTTT
T ss_pred             hhhcCC-CeEEEECCCCCHHHHHHHHHHh
Confidence            478999 9999999999999999998765

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.18  E-value=0.86  Score=39.08  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=31.5

Q ss_pred             cCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021356          108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG  150 (313)
Q Consensus       108 l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~  150 (313)
                      ++| |||-|.| .|-+|..+++.|.+.      |++|+...+..
T Consensus         6 ~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTA   42 (356)
T ss_dssp             HTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSC
T ss_pred             hCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCC
Confidence            578 9999999 899999999999999      99987666654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.23  E-value=0.73  Score=38.22  Aligned_cols=30  Identities=37%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021356          114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK  149 (313)
Q Consensus       114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~  149 (313)
                      |.|||.|.-|-+-|..|.+.      |++|++..+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~------G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDS------GLNVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence            78999999999999999999      9999888764